Psyllid ID: psy15742

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MESKKVLEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQETLNTLPSEFGSQRKKKRRRKKRSFELNYQEDLGDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQDMETV
Secondary Structure (PSIPRED)
ccHHHHHHHHHcHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccHHHccccHHHHHHHHHccccccccccEEccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHcccccEEEEEccHHHHcccccccEEEEcccccccccccccccccccccccccHHHHHHHHHHcccccEEEccccccHHHHHHHHcccccEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHccccHHHHHHccccccccccccHHHHHHHHHHHccccHHHHHcHccccHHHcccHHHHHHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHHHHccccccccEEccHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccccEEEEEccHHHHHHHccccEEEEccccccccccccccccHHHHcccccHHHHHHHHHHHcccEEEEccccccHHHHHHHccccccccEEEEEEcccccccEccc
Coil and Loop (DISEMBL)
MESKKVLEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQetlntlpsefgsqrkkkrrrkkrSFELNYqedlgdlenvpeeiwanpylnkyYQQRYLYWSRydegilmdeeswysvtPEKVAQHIASRCkasdvvidgwysvtPEKVAQHIASRCkasdvvidgfcgcggnTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQgdffalapslqgdvvflsppwggpeyarssfsidnifpeqgggrRLFQVARgispnvgyylprtsdVFEIFhdsgkkgsfisltgrqmfspsqdmetv
Flexible Loop (DISEMBL)
meskkvleDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQetlntlpsefgsqrkkkrrrkkrsfelnyqedlgdlenvpeeiwANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFisltgrqmfspsqdmetv
Low Complexity Region (SEG)
MESKKVLEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQETLNTLPSEFGSQrkkkrrrkkrSFELNYQEDLGDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQDMETV
Disordered region (IsUnstruct)
******LEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQETLN***************************DLGDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFI*****************
Disordered Region (DISOPRED)
*****V***VAYQDI******************************************************************************************DLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMFSP***M***
Disordered Region (DISEMBL)
MESKKVLEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQETLNTLPSE**************SFELNYQEDLGDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMF*********
Disordered Region (DISPRO)
**SKKVLEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQETLN*LPS****Q*********RSFELNYQEDLGDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMFSPS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESKKVLEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQETLNTLPSEFGSQRKKKRRRKKRSFELNYQEDLGDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQDMETV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
P85107	850	Trimethylguanosine syntha	yes	N/A	0.549	0.221	0.45	2e-48
Q923W1	853	Trimethylguanosine syntha	yes	N/A	0.543	0.218	0.449	5e-48
Q96RS0	853	Trimethylguanosine syntha	yes	N/A	0.540	0.216	0.456	3e-47
Q09814	239	Trimethylguanosine syntha	yes	N/A	0.558	0.799	0.422	5e-36
Q12052	315	Trimethylguanosine syntha	yes	N/A	0.605	0.657	0.308	4e-20
Q2RFW1	283	Release factor glutamine	yes	N/A	0.260	0.314	0.290	4e-05
Q7NGN4	457	Uncharacterized RNA methy	yes	N/A	0.228	0.170	0.303	0.0001
P39199	310	50S ribosomal protein L3	N/A	N/A	0.350	0.387	0.276	0.0002
P0A293	310	50S ribosomal protein L3	yes	N/A	0.260	0.287	0.282	0.0002
P0A294	310	50S ribosomal protein L3	N/A	N/A	0.260	0.287	0.282	0.0002

>sp|P85107|TGS1_RAT Trimethylguanosine synthase OS=Rattus norvegicus GN=Tgs1 PE=1 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 99/220 (45%), Positives = 139/220 (63%), Gaps = 32/220 (14%)

Query: 107 LENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDV 166
           +  +P EI + P L KY+ QRY  +SR+D+GI +D+E                       
Sbjct: 625 INGLPPEIASVPELAKYWAQRYRLFSRFDDGIKLDKE----------------------- 661

Query: 167 VIDGWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAK 223
              GW+SVTPEK+A+HIA R   S   D+++D FCG GGNTIQFA   ++VI+IDIDP K
Sbjct: 662 ---GWFSVTPEKIAEHIAGRVSQSFNCDIIVDAFCGVGGNTIQFALTGKRVIAIDIDPVK 718

Query: 224 LRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFP 282
           + LA++NA VYGV+ KI+FI GDF  LAP L+ DVVFLSPPWGGP+YA + +F I  +  
Sbjct: 719 IDLARNNAEVYGVADKIEFICGDFLLLAPCLKADVVFLSPPWGGPDYATAETFDIRTMM- 777

Query: 283 EQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKG 322
               G  +F++++ I+ N+ Y+LPR +DV ++   +G  G
Sbjct: 778 -SPDGFEIFRLSQKITNNIVYFLPRNADVDQVASLAGPGG 816

Catalyzes the 2 serial methylation steps for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure. The enzyme is specific for guanine, and N7 methylation must precede N2 methylation. Hypermethylation of the m7G cap of U snRNAs leads to their concentration in nuclear foci, their colocalization with coilin and the formation of canonical Cajal bodies (CBs). Plays a role in transcriptional regulation.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q923W1|TGS1_MOUSE Trimethylguanosine synthase OS=Mus musculus GN=Tgs1 PE=1 SV=2

 Score =  191 bits (486), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 98/218 (44%), Positives = 139/218 (63%), Gaps = 32/218 (14%)

Query: 109 NVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVI 168
           ++P EI + P L KY+ QRY  +SR+D+GI +D+E                         
Sbjct: 625 DLPPEIASVPELAKYWAQRYRLFSRFDDGIKLDKE------------------------- 659

Query: 169 DGWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 225
            GW+SVTPEK+A+HIA R   +   DVV+D FCG GGNTIQFA   ++VI+IDIDP K+ 
Sbjct: 660 -GWFSVTPEKIAEHIAGRVSQAFRCDVVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKID 718

Query: 226 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 284
           LA++NA VYG++ KI+FI GDF  LAP L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct: 719 LARNNAEVYGIADKIEFICGDFLLLAPCLKADVVFLSPPWGGPDYATAETFDIRTMM--S 776

Query: 285 GGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKG 322
             G  +F++++ I+ N+ Y+LPR +D+ ++   +G  G
Sbjct: 777 PDGFEIFRLSQKITNNIVYFLPRNADIDQVASLAGLGG 814

Catalyzes the 2 serial methylation steps for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure. The enzyme is specific for guanine, and N7 methylation must precede N2 methylation. Hypermethylation of the m7G cap of U snRNAs leads to their concentration in nuclear foci, their colocalization with coilin and the formation of canonical Cajal bodies (CBs). Plays a role in transcriptional regulation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q96RS0|TGS1_HUMAN Trimethylguanosine synthase OS=Homo sapiens GN=TGS1 PE=1 SV=3

 Score =  189 bits (480), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 99/217 (45%), Positives = 135/217 (62%), Gaps = 32/217 (14%)

Query: 110 VPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVID 169
           +P EI A P L KY+ QRY  +SR+D+GI +D E                          
Sbjct: 634 LPPEIAAVPELAKYWAQRYRLFSRFDDGIKLDRE-------------------------- 667

Query: 170 GWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRL 226
           GW+SVTPEK+A+HIA R   S   DVV+D FCG GGNTIQFA    +VI+IDIDP K+ L
Sbjct: 668 GWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIAL 727

Query: 227 AQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQG 285
           A++NA VYG++ KI+FI GDF  LA  L+ DVVFLSPPWGGP+YA + +F I  +     
Sbjct: 728 ARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTMM--SP 785

Query: 286 GGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKG 322
            G  +F++++ I+ N+ Y+LPR +D+ ++   +G  G
Sbjct: 786 DGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGG 822

Catalyzes the 2 serial methylation steps for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure. The enzyme is specific for guanine, and N7 methylation must precede N2 methylation. Hypermethylation of the m7G cap of U snRNAs leads to their concentration in nuclear foci, their colocalization with coilin and the formation of canonical Cajal bodies (CBs). Plays a role in transcriptional regulation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q09814|TGS1_SCHPO Trimethylguanosine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tgs1 PE=1 SV=3

 Score =  152 bits (383), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/227 (42%), Positives = 132/227 (58%), Gaps = 36/227 (15%)

Query: 98  LNYQEDLGDLENVPEEIWANPY---LNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVA 154
           +N  E+L + E + + I   P    L KY+  RY  +SR+DEGI +D +SWYSVTPEKVA
Sbjct: 1   MNKNEELDEDELLKKCIICPPVPKALKKYWNNRYNLFSRFDEGIWLDYQSWYSVTPEKVA 60

Query: 155 QHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKV 214
             IA        V+D    + PE              ++ID F GCGGNTIQFA  C  V
Sbjct: 61  VAIAKS------VVD---FIQPE--------------LIIDAFSGCGGNTIQFAKYCP-V 96

Query: 215 ISIDIDPAKLRLAQHNASVYGV-SHKIQFIQGDFFALAPSLQ-----GDVVFLSPPWGGP 268
           ISI+IDP K+ +A+HN  +YG+ S ++ FIQGD      SLQ       +VF+SPPWGGP
Sbjct: 97  ISIEIDPIKIAMAKHNLEIYGIPSSRVTFIQGDVLDTFKSLQFAKDYRSLVFMSPPWGGP 156

Query: 269 EYA-RSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEI 314
            Y+ ++ +S++++ P       LF+ A  ISP V  +LPR +DV E+
Sbjct: 157 SYSGKTVYSLNDLNPY--AFDVLFKEATRISPYVAAFLPRNTDVKEL 201

Catalyzes the two serial methylation steps for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure. The enzyme is specific for guanine, and N7 methylation must precede N2 methylation. Required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. Involved in nucleolar structural organization.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q12052|TGS1_YEAST Trimethylguanosine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TGS1 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 111/240 (46%), Gaps = 33/240 (13%)

Query: 86  KKKRRRKKRSFELNYQEDLGDLENVPEEIWA-----NPYLNKYYQQRYLYWSRYDEG-IL 139
           K K   +KR    N++  +  L N   +I +     N  L KY++ R   +S+ D   I 
Sbjct: 10  KIKHAARKRKHHSNFRTLIKLLNNDAYKIESSKPLKNGKLFKYWKNRRRLFSKIDSASIY 69

Query: 140 MDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCG 199
           M +E W+SVTPE++A  +A+  KA            P             ++ ++D FCG
Sbjct: 70  MTDELWFSVTPERIACFLANFVKA----------CMPN------------AERILDVFCG 107

Query: 200 CGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSL 254
            GGNTIQFA     V  +D     +     NA  YGV  +I   +G +  L        +
Sbjct: 108 GGGNTIQFAMQFPYVYGVDYSIEHIYCTAKNAQSYGVDDRIWLKRGSWKKLVSKQKLSKI 167

Query: 255 QGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEI 314
           + D VF SPPWGGPEY R+         +  G  ++ +    +SPNV  +LPR SD+ ++
Sbjct: 168 KYDCVFGSPPWGGPEYLRNDVYDLEQHLKPMGITKMLKSFLKLSPNVIMFLPRNSDLNQL 227

Catalyzes the two serial methylation steps for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure. The enzyme is specific for guanine, and N7 methylation must precede N2 methylation. Hypermethylates the m3G cap on TLC1 telomerase which affects telomere silencing and telomere length regulation. Required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. Involved in nucleolar structural organization.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q2RFW1|PRMC_MOOTA Release factor glutamine methyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=prmC PE=3 SV=1

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVC----QKVISIDIDPAKLRLAQHNAS 232
           E V + +  R    +      CG G   I  +        +V + DI PA L +AQ NA 
Sbjct: 98  EVVVEAVLERLDPCESYTIADCGTGSGAIALSLAHYLPRARVYATDISPAALTVAQENAR 157

Query: 233 VYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW 265
             G++ ++  +QGDF A    L+ D +  +PP+
Sbjct: 158 KLGLAARVTLLQGDFLAPLRGLKLDALVANPPY 190

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|Q7NGN4|Y3134_GLOVI Uncharacterized RNA methyltransferase gll3134 OS=Gloeobacter violaceus (strain PCC 7421) GN=gll3134 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 248
           A   V+D +CG G  ++  A   + V+ I+     +  A+ NA + G+ +  +F+ G   
Sbjct: 315 AEQTVVDAYCGIGTLSLPLARAARAVVGIESHVRSVEQARQNARINGIEN-CRFLAGTVE 373

Query: 249 ALAPSLQGDVVFLSPPWGG 267
           AL P L+ D+V + PP  G
Sbjct: 374 ALLPDLRADIVVVDPPRKG 392

Gloeobacter violaceus (strain PCC 7421) (taxid: 251221)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P39199|PRMB_ECOLI 50S ribosomal protein L3 glutamine methyltransferase OS=Escherichia coli (strain K12) GN=prmB PE=1 SV=3

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 10/130 (7%)

Query: 178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS 237
           K  QHI   C  S        GC      +A    +V ++DI P  L +A+ N   +G+ 
Sbjct: 131 KQPQHILDMCTGS--------GCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLI 182

Query: 238 HKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQG--GGRRLFQVAR 295
           H +  I+ D F   P +Q D++  +PP+   E      +     PE G   G    ++ R
Sbjct: 183 HNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLKLTR 242

Query: 296 GISPNVGYYL 305
            I  N   YL
Sbjct: 243 RILGNAADYL 252

Specifically methylates the 50S ribosomal protein L3 on 'Gln-150'. Does not methylate the translation termination release factors RF1 and RF2.

Escherichia coli (strain K12) (taxid: 83333)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 5

>sp|P0A293|PRMB_SALTY 50S ribosomal protein L3 glutamine methyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=prmB PE=3 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 177 EKVAQHIASRCKASDVVIDGFC---GCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASV 233
           E +  H A         I   C   GC      +A    +V ++DI P  L +A+HN   
Sbjct: 119 ELINNHFAGLISQQPKYILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEHNIEE 178

Query: 234 YGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW 265
           +G+ H +  I+ D F   P +Q D++  +PP+
Sbjct: 179 HGLIHHVTPIRSDLFRDLPKVQYDLIVTNPPY 210

Specifically methylates the 50S ribosomal protein L3 on 'Gln-150'.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 5

>sp|P0A294|PRMB_SALTI 50S ribosomal protein L3 glutamine methyltransferase OS=Salmonella typhi GN=prmB PE=3 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 177 EKVAQHIASRCKASDVVIDGFC---GCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASV 233
           E +  H A         I   C   GC      +A    +V ++DI P  L +A+HN   
Sbjct: 119 ELINNHFAGLISQQPKYILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEHNIEE 178

Query: 234 YGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW 265
           +G+ H +  I+ D F   P +Q D++  +PP+
Sbjct: 179 HGLIHHVTPIRSDLFRDLPKVQYDLIVTNPPY 210

Specifically methylates the 50S ribosomal protein L3 on 'Gln-150'.

Salmonella typhi (taxid: 90370)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
384485281	407	hypothetical protein RO3G_02165 [Rhizopu	0.5	0.420	0.492	3e-53
320167535	522	Tgs1 protein [Capsaspora owczarzaki ATCC	0.616	0.404	0.438	7e-51
193662159	248	PREDICTED: trimethylguanosine synthase-l	0.578	0.798	0.429	7e-51
156548692	577	PREDICTED: hypothetical protein LOC10011	0.576	0.341	0.467	9e-51
198435713	787	PREDICTED: similar to hepatocellular car	0.511	0.222	0.490	9e-51
307213126	978	Trimethylguanosine synthase-like protein	0.561	0.196	0.464	1e-50
350410802	1112	PREDICTED: hypothetical protein LOC10074	0.517	0.159	0.490	1e-49
383862993	1113	PREDICTED: uncharacterized protein LOC10	0.517	0.159	0.470	2e-49
332031558	1035	Trimethylguanosine synthase [Acromyrmex	0.520	0.171	0.473	3e-49
196009009	725	hypothetical protein TRIADDRAFT_58107 [T	0.540	0.255	0.469	1e-48

>gi|384485281|gb|EIE77461.1| hypothetical protein RO3G_02165 [Rhizopus delemar RA 99-880]

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 99/201 (49%), Positives = 134/201 (66%), Gaps = 30/201 (14%)

Query: 120 LNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKV 179
           + KYY QRY Y+S++DEG+LMD+E                          GW+SVTPEK+
Sbjct: 179 MKKYYFQRYEYFSKFDEGVLMDKE--------------------------GWFSVTPEKI 212

Query: 180 AQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHK 239
           A HI+ RC+ SDV+ID FCGCGGN+IQFA  C +VI+ID+DP KL  A+ NA +YGV HK
Sbjct: 213 ASHISKRCQ-SDVIIDAFCGCGGNSIQFALSCNQVIAIDLDPVKLYCARENAKIYGVEHK 271

Query: 240 IQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQGGGRRLFQVARGIS 298
           I+FI GDFF LAP L+ DVVFLSPPWGGP Y  + +F++ ++ P  G    +FQ+A  I+
Sbjct: 272 IEFILGDFFQLAPKLKADVVFLSPPWGGPSYMNTETFNLKSMIPRDGA--HIFQIASSIT 329

Query: 299 PNVGYYLPRTSDVFEIFHDSG 319
           PN+ Y++PR +D  ++   +G
Sbjct: 330 PNIAYFVPRNTDPHQLARLAG 350

Source: Rhizopus delemar RA 99-880

Species: Rhizopus delemar

Genus: Rhizopus

Family: Rhizopodaceae

Order: Mucorales

Superkingdom: Eukaryota

>gi|320167535|gb|EFW44434.1| Tgs1 protein [Capsaspora owczarzaki ATCC 30864]

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 106/242 (43%), Positives = 149/242 (61%), Gaps = 31/242 (12%)

Query: 83  SQRKKKRRRKKRSFELNYQEDLGDLENVP-EEIWANPYLNKYYQQRYLYWSRYDEGILMD 141
           S  KK+R+R+K     N ++ L D + +      A P  +KY+ QRY  +S++DEG++MD
Sbjct: 254 SSSKKRRQRRKAQLAANAEKLLRDEQALQLPSTCAKPPHSKYWFQRYRLFSKFDEGVMMD 313

Query: 142 EESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCG 201
           EE                          GWYSVTPE +A HIA RC A+ VV+D FCG G
Sbjct: 314 EE--------------------------GWYSVTPEVIAAHIAWRC-AAGVVVDAFCGVG 346

Query: 202 GNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL 261
           GNTIQFA     VI+IDIDP K+  A+HNA +YGV  +I+FI  DFFA+AP L+ DVVFL
Sbjct: 347 GNTIQFALSSHFVIAIDIDPRKIECARHNARLYGVEDRIEFIVADFFAVAPRLRADVVFL 406

Query: 262 SPPWGGPEY-ARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGK 320
           SPPWGGP Y  +  F+++++ P  G    +F+ A+ ISPN+ Y++PR +D+ ++   +G 
Sbjct: 407 SPPWGGPSYLEKEVFALEDMLPRHGA--EIFRAAQSISPNIAYFVPRNTDLEQLAELAGP 464

Query: 321 KG 322
           +G
Sbjct: 465 EG 466

Source: Capsaspora owczarzaki ATCC 30864

Species: Capsaspora owczarzaki

Genus: Capsaspora

Class: Ichthyosporea

Superkingdom: Eukaryota

>gi|193662159|ref|XP_001950779.1| PREDICTED: trimethylguanosine synthase-like [Acyrthosiphon pisum]

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 97/226 (42%), Positives = 147/226 (65%), Gaps = 28/226 (12%)

Query: 84  QRKKKRRRKKRSFELNYQEDLGDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEE 143
           + K++R R+ ++     + D    + +P EI  +  L KY++ RY  + +YD+GI +D E
Sbjct: 8   KNKRRRIRELKNVTKRQRLDPKLFKRLPAEIQKDTSLLKYWRSRYRLFKKYDQGIKLDGE 67

Query: 144 SWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGN 203
           SWYS TPE +++ IA RCK                            D++IDGFCG G N
Sbjct: 68  SWYSATPEVISRMIAERCKC---------------------------DLIIDGFCGAGSN 100

Query: 204 TIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP 263
           +IQFA   +KVI+IDIDP K+ LA++NA VYGVS +I+FI GD++ALAP+L+ DVVFL+P
Sbjct: 101 SIQFALTSKKVIAIDIDPIKIELARNNAKVYGVSDRIEFIIGDYYALAPTLKADVVFLAP 160

Query: 264 PWGGPEYA-RSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRT 308
           PWGGP+Y+ +++F+ID+I P  GGG+ L+++ R I+ N+ ++LP+ 
Sbjct: 161 PWGGPKYSQKTTFNIDDIMPNNGGGKHLYELTRQITKNIAFFLPKN 206

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548692|ref|XP_001602591.1| PREDICTED: hypothetical protein LOC100118684 [Nasonia vitripennis]

 Score =  207 bits (526), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 107/229 (46%), Positives = 145/229 (63%), Gaps = 32/229 (13%)

Query: 110 VPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVID 169
           +PE +  NP L KY+ +RY  +S++DEGI +D+ESW+SV                     
Sbjct: 367 LPEYVQKNPILKKYWAKRYRLFSKFDEGIKLDDESWFSV--------------------- 405

Query: 170 GWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH 229
                TPEKVA+HIA RC+  D++ID FCG GGN+I FA  C++V +IDIDP K+ +A+H
Sbjct: 406 -----TPEKVAKHIAERCRC-DMLIDAFCGAGGNSISFAFTCERVYAIDIDPKKIEMARH 459

Query: 230 NASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQGGGR 288
           NA +YGV  +I+FI GDFF LA  L GDVVFLSPPWGGP Y +  SF I+NI  +  GG 
Sbjct: 460 NARIYGVEDRIEFIIGDFFCLAERLFGDVVFLSPPWGGPSYIQDKSFDIENIM-DPHGGI 518

Query: 289 RLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQ 337
           +LF+V++ IS N+ Y+LP+  +  ++   +G  GS I L   Q F  SQ
Sbjct: 519 KLFEVSKRISDNIAYFLPKNINTLQLAMTAG-PGSKIEL--EQNFLDSQ 564

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198435713|ref|XP_002131256.1| PREDICTED: similar to hepatocellular carcinoma-associated antigen 137 [Ciona intestinalis]

 Score =  206 bits (525), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 102/208 (49%), Positives = 134/208 (64%), Gaps = 33/208 (15%)

Query: 109 NVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVI 168
           N+PEEI  +  L KY+ QRY  +SR+DEGI +D ESWYSV                    
Sbjct: 532 NLPEEIENDASLKKYWVQRYKLFSRFDEGIKLDRESWYSV-------------------- 571

Query: 169 DGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 228
                 TPEK+A+HIA RC+  DV++D FCG GGN IQFA  C+KV++IDIDP KL  A+
Sbjct: 572 ------TPEKIAEHIAERCRC-DVIVDAFCGSGGNAIQFAFTCEKVLAIDIDPVKLENAK 624

Query: 229 HNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYAR-SSFSIDNIFPEQGG- 286
           HNA++YGV  +I FI G FF +AP+L+ D+VFLSPPWGGPEY    ++SI     E G  
Sbjct: 625 HNAAIYGVEDRIDFICGSFFDIAPTLKADIVFLSPPWGGPEYTNCETYSI----AEMGDF 680

Query: 287 GRRLFQVARGISPNVGYYLPRTSDVFEI 314
           G + F +A+ IS N+ ++LPR S+V E+
Sbjct: 681 GTKAFTLAKNISDNIAFFLPRNSNVDEL 708

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307213126|gb|EFN88648.1| Trimethylguanosine synthase-like protein [Harpegnathos saltator]

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/228 (46%), Positives = 144/228 (63%), Gaps = 36/228 (15%)

Query: 88  KRRRKKRSFELNYQEDLGDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYS 147
           +RRR KR   L  ++D  +    P+E+  +P L +Y+  RY  + +YDEGI +D+ESWYS
Sbjct: 742 ERRRCKR---LRTEDDTAE---PPQEVEDDPTLVRYWLNRYELFHKYDEGIQLDKESWYS 795

Query: 148 VTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQF 207
           V                          TPE++A+ IA RCK  +++ID FCG GGNTIQF
Sbjct: 796 V--------------------------TPERIAKQIARRCKC-NIIIDAFCGAGGNTIQF 828

Query: 208 AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG 267
           A  C KVI+IDIDP K+ LA+HNA +YGV +KI+FI G+F  LAP L+ DVVFLSPPWGG
Sbjct: 829 ALTCNKVIAIDIDPIKIELAKHNAKIYGVDNKIEFIVGNFLELAPKLEADVVFLSPPWGG 888

Query: 268 PEYARS-SFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEI 314
           P Y  S  F I+ IFP   GG+ +++ AR IS +V Y+LPR  ++ ++
Sbjct: 889 PGYLESLIFDIEWIFP--VGGKHVYKAARRISTSVAYFLPRNVNIRQV 934

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350410802|ref|XP_003489145.1| PREDICTED: hypothetical protein LOC100748607 [Bombus impatiens]

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/206 (49%), Positives = 131/206 (63%), Gaps = 29/206 (14%)

Query: 110  VPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVID 169
            +P EI  +  L KY+ +RY  +S++D+GI +D ESWYSV                     
Sbjct: 900  LPVEIDNDKTLMKYWFKRYRLFSKFDQGIKLDRESWYSV--------------------- 938

Query: 170  GWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH 229
                 TPEK+AQHIA RCK  D VID FCG GGN IQFA  C++V +IDIDPAK+ +A++
Sbjct: 939  -----TPEKIAQHIAQRCKC-DTVIDAFCGAGGNAIQFAFTCERVFAIDIDPAKIEIARN 992

Query: 230  NASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQGGGR 288
            NA VYGV  +I+FI GDF  LA  L  DVVFLSPPWGGPEYA++ +F ++NI     GG 
Sbjct: 993  NARVYGVEDRIEFIVGDFIKLASKLSADVVFLSPPWGGPEYAKNETFDLNNIM-HPIGGV 1051

Query: 289  RLFQVARGISPNVGYYLPRTSDVFEI 314
             LF +AR I+ +V Y+LPR  D  ++
Sbjct: 1052 NLFNIARKITDHVAYFLPRNVDTMQL 1077

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862993|ref|XP_003706967.1| PREDICTED: uncharacterized protein LOC100882090 [Megachile rotundata]

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/206 (47%), Positives = 133/206 (64%), Gaps = 29/206 (14%)

Query: 110  VPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVID 169
            +P EI  +  L KY+ +RY  +S++D+GI MD ESW+SV                     
Sbjct: 901  LPIEIDNDKTLLKYWLKRYRLFSKFDQGIKMDRESWFSV--------------------- 939

Query: 170  GWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH 229
                 TPEK+A+HIA RCK  D +ID FCG GGN IQFA  C++V++IDIDP K+ LA++
Sbjct: 940  -----TPEKIAEHIAQRCKC-DTIIDAFCGAGGNAIQFAFTCERVLAIDIDPMKIELARN 993

Query: 230  NASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQGGGR 288
            NA VYGV  +I+FI GDF  LAP L  DVVFLSPPWGGPEY ++ ++ ++NI     GG 
Sbjct: 994  NARVYGVDDRIEFIVGDFLKLAPKLAADVVFLSPPWGGPEYNKTETYDLNNIM-HPIGGT 1052

Query: 289  RLFQVARGISPNVGYYLPRTSDVFEI 314
             +F++A+GI+ +V Y+LPR  D  ++
Sbjct: 1053 NVFKIAKGITDHVAYFLPRNVDTMQL 1078

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031558|gb|EGI71030.1| Trimethylguanosine synthase [Acromyrmex echinatior]

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 98/207 (47%), Positives = 131/207 (63%), Gaps = 29/207 (14%)

Query: 110  VPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVID 169
            +P EI  +  L KYY +R+  +SRY++GI +D ESW+SV                     
Sbjct: 824  IPREIANDYRLRKYYFKRFGLFSRYEDGIKLDRESWFSV--------------------- 862

Query: 170  GWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH 229
                 TPE++A+ IA RC+  D +ID FCG G N IQFA  C++VI+IDIDP K+++A+H
Sbjct: 863  -----TPEEIAKDIAERCRC-DTIIDAFCGAGSNAIQFAFTCERVIAIDIDPDKIKIARH 916

Query: 230  NASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEY-ARSSFSIDNIFPEQGGGR 288
            NA +YGV  +I+FI GDF  LAP L  DVVFLSPPWGGP+Y  R  F +++I P   GGR
Sbjct: 917  NAGIYGVDDRIEFITGDFLQLAPQLVADVVFLSPPWGGPDYIKRKVFDLESIMP-PIGGR 975

Query: 289  RLFQVARGISPNVGYYLPRTSDVFEIF 315
             +F+ AR I+ +V YYLPR SD  +I 
Sbjct: 976  SIFEAARRITQHVAYYLPRNSDPLQII 1002

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|196009009|ref|XP_002114370.1| hypothetical protein TRIADDRAFT_58107 [Trichoplax adhaerens] gi|190583389|gb|EDV23460.1| hypothetical protein TRIADDRAFT_58107 [Trichoplax adhaerens]

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 101/215 (46%), Positives = 133/215 (61%), Gaps = 30/215 (13%)

Query: 109 NVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVI 168
           NVP     N    KY+ QRY  +S++DEGI++DEE                         
Sbjct: 508 NVPAVKPLNRKHYKYWVQRYRLFSKFDEGIMLDEE------------------------- 542

Query: 169 DGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 228
            GW+SVTPEK+AQHIA RC+ S ++ID FCG GGN IQFA  C  VI+IDIDP K++ A+
Sbjct: 543 -GWFSVTPEKIAQHIAERCRCS-IIIDAFCGVGGNCIQFAKTCDHVIAIDIDPNKIKCAR 600

Query: 229 HNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQGGG 287
           HNA +Y V HKI+FI GDF  LAPSL+ DVVFLSPPWGGP Y ++ +F I  +      G
Sbjct: 601 HNAKIYNVEHKIEFIVGDFLQLAPSLKADVVFLSPPWGGPTYLKADTFDIKTMI--SLDG 658

Query: 288 RRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKG 322
            R+F  +  IS N+ Y++PRT++V ++   +G  G
Sbjct: 659 YRIFAESLSISRNIAYFVPRTANVSQLTQLAGIGG 693

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
RGD|1309953	850	Tgs1 "trimethylguanosine synth	0.444	0.178	0.518	5.5e-43
ZFIN|ZDB-GENE-070802-2	800	tgs1 "trimethylguanosine synth	0.444	0.19	0.525	8.8e-43
MGI|MGI:2151797	853	Tgs1 "trimethylguanosine synth	0.444	0.178	0.512	2e-42
UNIPROTKB|Q96RS0	853	TGS1 "Trimethylguanosine synth	0.444	0.178	0.512	6.8e-42
UNIPROTKB|I3LL53	842	LOC100621800 "Uncharacterized	0.447	0.181	0.531	6.9e-42
UNIPROTKB|F1RT52	852	TGS1 "Uncharacterized protein"	0.447	0.179	0.531	7.5e-42
UNIPROTKB|E1C5P9	434	TGS1 "Uncharacterized protein"	0.307	0.241	0.495	1.3e-25
UNIPROTKB|F1N1K9	854	TGS1 "Uncharacterized protein"	0.447	0.179	0.493	3e-38
UNIPROTKB|E2RCA5	853	TGS1 "Uncharacterized protein"	0.447	0.179	0.506	5.3e-38
UNIPROTKB|F1NL90	853	TGS1 "Uncharacterized protein"	0.423	0.169	0.486	8.7e-38

RGD|1309953 Tgs1 "trimethylguanosine synthase 1" [Rattus norvegicus (taxid:10116)]

 Score = 426 (155.0 bits), Expect = 5.5e-43, Sum P(2) = 5.5e-43
 Identities = 82/158 (51%), Positives = 114/158 (72%)

Query:   169 DGWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 225
             +GW+SVTPEK+A+HIA R   S   D+++D FCG GGNTIQFA   ++VI+IDIDP K+ 
Sbjct:   661 EGWFSVTPEKIAEHIAGRVSQSFNCDIIVDAFCGVGGNTIQFALTGKRVIAIDIDPVKID 720

Query:   226 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 284
             LA++NA VYGV+ KI+FI GDF  LAP L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct:   721 LARNNAEVYGVADKIEFICGDFLLLAPCLKADVVFLSPPWGGPDYATAETFDIRTMMSPD 780

Query:   285 GGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKG 322
             G    +F++++ I+ N+ Y+LPR +DV ++   +G  G
Sbjct:   781 GF--EIFRLSQKITNNIVYFLPRNADVDQVASLAGPGG 816

GO:0001510 "RNA methylation" evidence=ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0036261 "7-methylguanosine cap hypermethylation" evidence=ISO

GO:0071164 "RNA trimethylguanosine synthase activity" evidence=IEA;ISO

ZFIN|ZDB-GENE-070802-2 tgs1 "trimethylguanosine synthase homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 434 (157.8 bits), Expect = 8.8e-43, Sum P(2) = 8.8e-43
 Identities = 83/158 (52%), Positives = 113/158 (71%)

Query:   169 DGWYSVTPEKVAQHIASR---CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 225
             +GW+SVTPEK+A+HIA R   C  ++++ID FCG GGN IQFA   ++VI IDIDP +L 
Sbjct:   620 EGWFSVTPEKIAEHIALRVQDCFNTELIIDAFCGVGGNAIQFALTGKRVIGIDIDPVRLA 679

Query:   226 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSS-FSIDNIFPEQ 284
             LAQHNA+VYGV  +I F+QGDF  LAP L+GD+VFLSPPWGGPEY  +  F+I  +    
Sbjct:   680 LAQHNAAVYGVEQRIDFLQGDFLQLAPHLRGDMVFLSPPWGGPEYLTADVFNIQTMMTPD 739

Query:   285 GGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKG 322
             G    +F++++ IS N+ Y+LPR +D+ +I   +G  G
Sbjct:   740 GF--EIFRLSKMISDNIVYFLPRNADMEQIASLAGPGG 775

GO:0001510 "RNA methylation" evidence=IEA

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

MGI|MGI:2151797 Tgs1 "trimethylguanosine synthase homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 422 (153.6 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
 Identities = 81/158 (51%), Positives = 114/158 (72%)

Query:   169 DGWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 225
             +GW+SVTPEK+A+HIA R   +   DVV+D FCG GGNTIQFA   ++VI+IDIDP K+ 
Sbjct:   659 EGWFSVTPEKIAEHIAGRVSQAFRCDVVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKID 718

Query:   226 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 284
             LA++NA VYG++ KI+FI GDF  LAP L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct:   719 LARNNAEVYGIADKIEFICGDFLLLAPCLKADVVFLSPPWGGPDYATAETFDIRTMMSPD 778

Query:   285 GGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKG 322
             G    +F++++ I+ N+ Y+LPR +D+ ++   +G  G
Sbjct:   779 GF--EIFRLSQKITNNIVYFLPRNADIDQVASLAGLGG 814

GO:0001510 "RNA methylation" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISA

GO:0005737 "cytoplasm" evidence=ISA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0036261 "7-methylguanosine cap hypermethylation" evidence=ISO

GO:0071164 "RNA trimethylguanosine synthase activity" evidence=ISO

UNIPROTKB|Q96RS0 TGS1 "Trimethylguanosine synthase" [Homo sapiens (taxid:9606)]

 Score = 418 (152.2 bits), Expect = 6.8e-42, Sum P(2) = 6.8e-42
 Identities = 81/158 (51%), Positives = 112/158 (70%)

Query:   169 DGWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 225
             +GW+SVTPEK+A+HIA R   S   DVV+D FCG GGNTIQFA    +VI+IDIDP K+ 
Sbjct:   667 EGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIA 726

Query:   226 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 284
             LA++NA VYG++ KI+FI GDF  LA  L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct:   727 LARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTMMSPD 786

Query:   285 GGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKG 322
             G    +F++++ I+ N+ Y+LPR +D+ ++   +G  G
Sbjct:   787 GF--EIFRLSKKITNNIVYFLPRNADIDQVASLAGPGG 822

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000387 "spliceosomal snRNP assembly" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0034660 "ncRNA metabolic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0022613 "ribonucleoprotein complex biogenesis" evidence=IC

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=IC

GO:0071167 "ribonucleoprotein complex import into nucleus" evidence=IC

GO:0001510 "RNA methylation" evidence=IDA

GO:0071164 "RNA trimethylguanosine synthase activity" evidence=IDA

GO:0036261 "7-methylguanosine cap hypermethylation" evidence=IDA

UNIPROTKB|I3LL53 LOC100621800 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 433 (157.5 bits), Expect = 6.9e-42, Sum P(2) = 6.9e-42
 Identities = 84/158 (53%), Positives = 115/158 (72%)

Query:   169 DGWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 225
             +GW+SVTPEK+A+HIA R   S   D+V+D FCG GGNTIQFA   ++VI+IDIDP K+ 
Sbjct:   655 EGWFSVTPEKIAEHIAGRVSQSFQCDIVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKID 714

Query:   226 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 284
             LA++NA VYGV+ KI+FIQGDF  LAP L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct:   715 LARNNAEVYGVADKIEFIQGDFLQLAPRLKADVVFLSPPWGGPDYATAETFDIRTMMAPD 774

Query:   285 GGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKG 322
             G    +F++++ I+ N+ Y+LPR +DV ++   +G  G
Sbjct:   775 GYFE-IFRLSQMITNNIVYFLPRNADVDQVASLAGPGG 811

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0001510 "RNA methylation" evidence=IEA

UNIPROTKB|F1RT52 TGS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 433 (157.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
 Identities = 84/158 (53%), Positives = 115/158 (72%)

Query:   169 DGWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 225
             +GW+SVTPEK+A+HIA R   S   D+V+D FCG GGNTIQFA   ++VI+IDIDP K+ 
Sbjct:   665 EGWFSVTPEKIAEHIAGRVSQSFQCDIVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKID 724

Query:   226 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 284
             LA++NA VYGV+ KI+FIQGDF  LAP L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct:   725 LARNNAEVYGVADKIEFIQGDFLQLAPRLKADVVFLSPPWGGPDYATAETFDIRTMMAPD 784

Query:   285 GGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKG 322
             G    +F++++ I+ N+ Y+LPR +DV ++   +G  G
Sbjct:   785 GYFE-IFRLSQMITNNIVYFLPRNADVDQVASLAGPGG 821

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0001510 "RNA methylation" evidence=IEA

UNIPROTKB|E1C5P9 TGS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 291 (107.5 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 60/121 (49%), Positives = 79/121 (65%)

Query:   169 DGWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 225
             +GW+SVTPEK+A+HIA R   S   + ++D FCG G            VI++DIDP KL 
Sbjct:    62 EGWFSVTPEKIAEHIAVRVAQSFNCNTIVDAFCGVG------------VIAVDIDPEKLS 109

Query:   226 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSS-FSIDNIFPEQ 284
             LA+ NA VYGV+++I+F+ GDF  LA  L+ DVVFLSPPWGGP+YA +  F I  +    
Sbjct:   110 LARSNAEVYGVANQIEFVCGDFMVLAADLKADVVFLSPPWGGPDYATAEIFDIQTMICPD 169

Query:   285 G 285
             G
Sbjct:   170 G 170

GO:0001510 "RNA methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

UNIPROTKB|F1N1K9 TGS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 399 (145.5 bits), Expect = 3.0e-38, Sum P(2) = 3.0e-38
 Identities = 78/158 (49%), Positives = 108/158 (68%)

Query:   169 DGWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 225
             +GW+SVTPEK+A+HIA R   S     ++D FCG GGNTIQFA   ++VI+IDIDP K+ 
Sbjct:   667 EGWFSVTPEKIAEHIAGRVSQSLESGTIVDAFCGVGGNTIQFALTGKRVIAIDIDPVKID 726

Query:   226 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSS-FSIDNIFPEQ 284
             LA++NA +YGV  KI+FI GDF  LA SL+ DVVFLSPPWGGP+YA +  F I  +    
Sbjct:   727 LARNNAEIYGVVDKIEFICGDFLQLASSLKADVVFLSPPWGGPDYATAEIFDISTMMSPD 786

Query:   285 GGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKG 322
                  +F++A+ I+ N+ ++LPR +D  ++   +G  G
Sbjct:   787 STFE-IFRLAQKITNNIVFFLPRNADTDQVASLAGPGG 823

GO:0071164 "RNA trimethylguanosine synthase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

UNIPROTKB|E2RCA5 TGS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 416 (151.5 bits), Expect = 5.3e-38, P = 5.3e-38
 Identities = 80/158 (50%), Positives = 113/158 (71%)

Query:   169 DGWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 225
             +GW+SVTPEK+A+HIA R   S   D+V+D FCG GGNTIQFA   ++VI+IDIDP K+ 
Sbjct:   666 EGWFSVTPEKIAEHIAGRVSQSFKCDIVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKID 725

Query:   226 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQ 284
             LA++NA VYG++ KI+FI GDF  LA  L+ DVVFLSPPWGGP+YA + +F I  +    
Sbjct:   726 LARNNAEVYGIADKIEFICGDFLLLASHLKADVVFLSPPWGGPDYATAETFDIRTMMSPD 785

Query:   285 GGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKG 322
             G    +F++++ I+ N+ Y+LPR +D+ ++   +G  G
Sbjct:   786 GYFE-IFRLSQKITNNIVYFLPRNADIDQVASLAGPGG 822

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0001510 "RNA methylation" evidence=IEA

UNIPROTKB|F1NL90 TGS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 388 (141.6 bits), Expect = 8.7e-38, Sum P(2) = 8.7e-38
 Identities = 73/150 (48%), Positives = 106/150 (70%)

Query:   169 DGWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 225
             +GW+SVTPEK+A+HIA R   S   + ++D FCG GGN IQFA   ++VI++DIDP KL 
Sbjct:   705 EGWFSVTPEKIAEHIAVRVAQSFNCNTIVDAFCGVGGNAIQFALTSKRVIAVDIDPEKLS 764

Query:   226 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSS-FSIDNIFPEQ 284
             LA+ NA VYGV+++I+F+ GDF  LA  L+ DVVFLSPPWGGP+YA +  F I  +    
Sbjct:   765 LARSNAEVYGVANQIEFVCGDFMVLAADLKADVVFLSPPWGGPDYATAEIFDIQTMICPD 824

Query:   285 GGGRRLFQVARGISPNVGYYLPRTSDVFEI 314
             G   ++  +++ I+ N+ Y+LPR +D+ ++
Sbjct:   825 GYPFKVV-LSKKITNNIVYFLPRNTDINQV 853

GO:0009452 "7-methylguanosine RNA capping" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0071164 "RNA trimethylguanosine synthase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q12052	TGS1_YEAST	2, ., 1, ., 1, ., -	0.3083	0.6052	0.6571	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	342
pfam09445	165	pfam09445, Methyltransf_15, RNA cap guanine-N2 met	5e-43
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	2e-11
pfam01170	172	pfam01170, UPF0020, Putative RNA methylase family	3e-09
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	3e-08
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-07
COG2265	432	COG2265, TrmA, SAM-dependent methyltransferases re	2e-06
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	3e-06
COG1092	393	COG1092, COG1092, Predicted SAM-dependent methyltr	4e-06
COG0116	381	COG0116, COG0116, Predicted N6-adenine-specific DN	1e-05
TIGR00536	284	TIGR00536, hemK_fam, HemK family putative methylas	2e-05
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	2e-05
COG2520	341	COG2520, COG2520, Predicted methyltransferase [Gen	3e-05
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	3e-05
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	3e-05
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	6e-05
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	1e-04
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	2e-04
TIGR00479	431	TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransf	4e-04
pfam02475	199	pfam02475, Met_10, Met-10+ like-protein	7e-04
TIGR00537	179	TIGR00537, hemK_rel_arch, HemK-related putative me	0.001
PTZ00338	294	PTZ00338, PTZ00338, dimethyladenosine transferase-	0.001
PRK11783	702	PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransfera	0.001
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	0.002
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	0.002
TIGR03533	284	TIGR03533, L3_gln_methyl, protein-(glutamine-N5) m	0.003
TIGR01177	329	TIGR01177, TIGR01177, TIGR01177 family protein	0.003

>gnl|CDD|220246 pfam09445, Methyltransf_15, RNA cap guanine-N2 methyltransferase

 Score =  146 bits (370), Expect = 5e-43
 Identities = 61/129 (47%), Positives = 81/129 (62%), Gaps = 7/129 (5%)

Query: 192 VVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA 251
           +++D FCG GGNTIQFA V   VI IDI+P  L  AQHNA VYGVS +I FI GD+F L 
Sbjct: 3   IILDVFCGAGGNTIQFANVFCSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFELL 62

Query: 252 PSLQG-----DVVFLSPPWGGPEYARSS-FSIDNIFPEQGGGRRLFQVARGISPNVGYYL 305
             L+      D VFLSPPWGGP Y R + + ++    +  G  +L + +  IS N+  +L
Sbjct: 63  AKLKFGKIPYDCVFLSPPWGGPSYKRQNVYDLEKKL-KPYGLYQLLKESTEISKNIILFL 121

Query: 306 PRTSDVFEI 314
           PR SD+ ++
Sbjct: 122 PRNSDLNQL 130

RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyze methylation of the exocyclic N2 amine of 7-methylguanosine. Length = 165

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 190 SDVVIDGFCGCGGNTIQFAAVCQK--VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 247
            D V+D   G G   +  A       V+ +++DP    LA+   ++ G++ +++ + GD 
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60

Query: 248 FALAPSLQG--DVVFLSPPWG 266
             L     G  D+V  +PP+G
Sbjct: 61  RELLELPDGSFDLVLGNPPYG 81

This family contains methyltransferase domains. Length = 117

>gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 185 SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISI---DIDPAKLRLAQHNASVYGVSHKIQ 241
           +  K  D ++D  CG G   I+ A +   +  +   DID   ++ A+ NA   GV  KI+
Sbjct: 24  AGWKPGDPLLDPMCGSGTILIEAALMGANIAPLYGSDIDWRMVQGARINAENAGVGDKIE 83

Query: 242 FIQGDFFAL-APSLQGDVVFLSPPWG 266
           F+Q D   L   +   D +  +PP+G
Sbjct: 84  FVQADAAKLPLLNGSVDAIVTNPPYG 109

This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Length = 172

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 193 VIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA 251
           V+D  CG G   +  A     +V  +DI P  L LA+  A+   ++  ++ ++GD   L 
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAA-ALLADNVEVLKGDAEELP 60

Query: 252 PSLQG--DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLF 291
           P      DV+   PP        + F ++        G  L 
Sbjct: 61  PEADESFDVIISDPPLHHLVEDLARF-LEEARRLLKPGGVLV 101

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 198 CGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ 255
           CG G   I+ A +    +V  +D+ P  L LA+ NA    +  +I F+QGD       L+
Sbjct: 10  CGTGSLAIELARLFPGARVTGVDLSPEMLELARENAK-LALGPRITFVQGDAPDALDLLE 68

Query: 256 G-DVVFLS 262
           G D VF+ 
Sbjct: 69  GFDAVFIG 76

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
           + V+D +CG G   +  A   +KV  ++I P  +  AQ NA+  G+   ++FI GD    
Sbjct: 295 ERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEF 353

Query: 251 APSLQG----DVVFLSPP 264
            P+       DVV + PP
Sbjct: 354 TPAWWEGYKPDVVVVDPP 371

Length = 432

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 179 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGV 236
           V   +A   +    ++D   G G   I  A      +VI++DI P  L LA+ NA   G+
Sbjct: 100 VEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL 159

Query: 237 SHKIQFIQGDFFALAPSLQGDVVFLSPPW 265
             ++  +Q D F      + D++  +PP+
Sbjct: 160 -VRVLVVQSDLFE-PLRGKFDLIVSNPPY 186

Length = 280

>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 13/101 (12%)

Query: 189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQG 245
           A   V++ F   GG ++  AA+    +V S+D+    L  A+ NA + G+   + +FI G
Sbjct: 217 AGKRVLNLFSYTGGFSV-HAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVG 275

Query: 246 DFFALAPSLQG-----DVVFLSPPWGGPEYARSSFSIDNIF 281
           D F      +      D++ L P    P +ARS     +  
Sbjct: 276 DVFKWLRKAERRGEKFDLIILDP----PSFARSKKQEFSAQ 312

Length = 393

>gnl|CDD|223194 COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 211 CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-QGDVVFLSPPWG 266
              +   DIDP  +  A+ NA   GV   I+F Q D   L   L +  VV  +PP+G
Sbjct: 254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYG 310

Length = 381

>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 193 VIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
           ++D   G G   +  A      +VI++DI P  L +A+ NA    + H+++FIQ + F  
Sbjct: 118 ILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP 177

Query: 251 APSLQGDVVFLSPPW 265
               + D++  +PP+
Sbjct: 178 LAGQKIDIIVSNPPY 192

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGD 246
           K  D V++   G G   I  A   +KV+ +DI+P  +  A+ NA +  + +  ++ I+ D
Sbjct: 22  KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSD 81

Query: 247 FFALAPSLQGDVVFLSPP 264
            F      + DV+  +PP
Sbjct: 82  LFEPFRGDKFDVILFNPP 99

Length = 188

>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only]

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 183 IASRCKASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQ 241
           +A   K  + V+D F G G  +I  A     KV +IDI+P  +   + N  +  V  +++
Sbjct: 182 VAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVE 241

Query: 242 FIQGDFFALAP-SLQGDVVFLSPPWGGPEY 270
            I GD   +AP     D + +  P    E+
Sbjct: 242 PILGDAREVAPELGVADRIIMGLPKSAHEF 271

Length = 341

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 25/102 (24%)

Query: 191 DVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 248
           D + D   G G  TI++A      +VI+I+ D   L L + NA+ +GV + ++ ++GD  
Sbjct: 36  DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGD-- 92

Query: 249 ALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRL 290
                              PE      S D IF   GGG  +
Sbjct: 93  ------------------APEALPDLPSPDAIF--IGGGGNI 114

Length = 187

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP 264
           +V ++DI P  L +A+ NA+  G+   ++F+Q D+F   P  + D++  +PP
Sbjct: 113 RVTAVDISPEALAVARKNAARLGLD-NVEFLQSDWFEPLPGGKFDLIVSNPP 163

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 15/106 (14%)

Query: 193 VIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA 251
           ++D  CG G      A A    V  +DI    L LA+      G   K++F+  D   L 
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKG--PKVRFVVADARDL- 57

Query: 252 PSLQG--DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVAR 295
           P  +G  D+V      G      S   +  +       R   ++ R
Sbjct: 58  PFEEGSFDLVIC---AGLSLDYLSPKQLRALL------REAARLLR 94

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS-PP 264
           +V ++DI P  L +A+ NA  +G+  +++F+QGD+F   P  + D++ +S PP
Sbjct: 134 EVTAVDISPEALAVARRNA-KHGLGARVEFLQGDWFEPLPGGRFDLI-VSNPP 184

Length = 275

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 19/93 (20%)

Query: 192 VVIDGFCGCGG---NTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
            VI    GCGG   N IQ A +    ++I++D  P KL LA+     +G +H +   + D
Sbjct: 187 AVI----GCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR----RFGATHTVNASEDD 238

Query: 247 FFALAPSLQG----DVVFLSPPWGGPEYARSSF 275
                  L      D  F +   G     R + 
Sbjct: 239 AVEAVRDLTDGRGADYAFEAV--GRAATIRQAL 269

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
           ++V+D +CG G  T+  A   + V+ I++ P  +  AQ NA + G+++ ++F+ G    +
Sbjct: 294 ELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLETV 352

Query: 251 APSL-----QGDVVFLSPPWGG 267
            P         DV+ L PP  G
Sbjct: 353 LPKQPWAGQIPDVLLLDPPRKG 374

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [Protein synthesis, tRNA and rRNA base modification]. Length = 431

>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQK---VISIDIDPAKLRLAQHNASVYGVSHK 239
           IA   K  +VV+D F G G  +I   A   K   V +++++P  ++  + N  +  V   
Sbjct: 94  IAKLVKEGEVVVDMFAGIGPFSIP-IAKHSKAKRVYAVELNPEAVKYLKENIKLNKVEGV 152

Query: 240 IQFIQGDFFALAPSLQGDVVFLSPP 264
           I  I GD   +      D V ++ P
Sbjct: 153 ISPILGDVRDVILEGVADRVIMNLP 177

The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. Length = 199

>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
           D V++   G G   I+     + +++ DI+P  ++  + NA +  V   +  +  D   L
Sbjct: 21  DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVG--LDVVMTD---L 75

Query: 251 APSLQG--DVVFLSPPW 265
              ++G  DV+  +PP+
Sbjct: 76  FKGVRGKFDVILFNPPY 92

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179

>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 179 VAQHI--ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV 236
           V   I   +  K +D V++   G G  T +   + +KVI+I+IDP  +   +       +
Sbjct: 24  VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL 83

Query: 237 SHKIQFIQGDF 247
           + K++ I+GD 
Sbjct: 84  ASKLEVIEGDA 94

Length = 294

>gnl|CDD|236981 PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransferase; Provisional

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 218 DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD---VVFLSPPWG 266
           DIDP  ++ A+ NA   GV+  I F   D   L   L      +V  +PP+G
Sbjct: 263 DIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYG 314

Length = 702

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 193 VIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
           V+D  CG G  +I+ A     V ++DI    +++A++ A    V+  ++F   D  +L
Sbjct: 59  VLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL 116

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 188 KASDVVIDGFCGCGGNTIQFAA-VCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 244
           K+   V+D  CG G  T   A  +    +V+ IDI    +  A+ NA   G    ++FIQ
Sbjct: 2   KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYE-NVEFIQ 60

Query: 245 GDFFAL 250
           GD   L
Sbjct: 61  GDIEEL 66

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

 Score = 38.6 bits (91), Expect = 0.003
 Identities = 17/52 (32%), Positives = 30/52 (57%)

Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP 264
           +V ++DI P  L +A+ N   +G+  ++  IQ D FA  P  + D++  +PP
Sbjct: 147 EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPP 198

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 284

>gnl|CDD|233303 TIGR01177, TIGR01177, TIGR01177 family protein

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 185 SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 244
           +R    D V+D FCG GG  I+   +  KVI  DID   +  A+ N   YG+       +
Sbjct: 178 ARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-DFFVKR 236

Query: 245 GDFFALA-PSLQGDVVFLSPPWG 266
           GD   L   S   D +   PP+G
Sbjct: 237 GDATKLPLSSESVDAIATDPPYG 259

This family is found exclusively in the Archaea [Hypothetical proteins, Conserved]. Length = 329

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
KOG2730|consensus	263		99.93
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.89
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.89
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.88
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.88
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.87
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.87
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.87
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.86
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.83
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.76
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.66
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.65
KOG2187|consensus	534		99.65
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.63
COG4123	248	Predicted O-methyltransferase [General function pr	99.61
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.61
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.61
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	99.59
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.58
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.58
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.58
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.58
PHA03412	241	putative methyltransferase; Provisional	99.57
COG2890	280	HemK Methylase of polypeptide chain release factor	99.57
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.56
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.55
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.54
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.53
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.53
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.53
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.51
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.5
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.48
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.48
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.48
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.48
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.47
PRK14967	223	putative methyltransferase; Provisional	99.46
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.44
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.44
PHA03411	279	putative methyltransferase; Provisional	99.44
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.43
KOG2904|consensus	328		99.43
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.42
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.41
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.4
KOG3420|consensus	185		99.4
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.39
PRK14968	188	putative methyltransferase; Provisional	99.39
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.39
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.38
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.38
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.37
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.36
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.36
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.35
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.35
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.35
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.35
PRK11207	197	tellurite resistance protein TehB; Provisional	99.35
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.35
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.35
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.32
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.31
PLN02672	1082	methionine S-methyltransferase	99.31
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.3
KOG3926|consensus	332		99.3
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.3
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.29
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.29
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.28
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.27
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.27
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.27
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.26
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.25
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.25
PLN02244	340	tocopherol O-methyltransferase	99.25
KOG1271|consensus	227		99.24
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.22
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.22
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.22
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.22
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.21
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.2
PRK12335	287	tellurite resistance protein TehB; Provisional	99.2
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.18
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.18
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.17
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.16
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.14
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.14
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.12
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.12
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.12
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.11
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.11
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.11
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.11
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.11
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	99.1
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	99.09
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.09
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.09
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.09
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.08
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.08
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.07
COG2520	341	Predicted methyltransferase [General function pred	99.07
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.07
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.07
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.07
PLN02476	278	O-methyltransferase	99.05
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.04
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.04
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.03
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.02
KOG1270|consensus	282		99.0
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.0
PLN02336	475	phosphoethanolamine N-methyltransferase	99.0
KOG3191|consensus	209		98.99
PRK05785	226	hypothetical protein; Provisional	98.99
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.99
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.98
PRK07402	196	precorrin-6B methylase; Provisional	98.96
PRK10742	250	putative methyltransferase; Provisional	98.96
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.96
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.95
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.95
PRK04457	262	spermidine synthase; Provisional	98.95
PRK00811	283	spermidine synthase; Provisional	98.92
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.92
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.91
PRK04266	226	fibrillarin; Provisional	98.9
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.9
PRK06922	677	hypothetical protein; Provisional	98.89
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.89
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.89
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.88
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.87
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.86
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.85
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.85
KOG2671|consensus	421		98.85
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.84
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.84
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.83
PLN03075	296	nicotianamine synthase; Provisional	98.83
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.82
PRK01581	374	speE spermidine synthase; Validated	98.8
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.79
COG4122	219	Predicted O-methyltransferase [General function pr	98.79
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.79
PRK06202	232	hypothetical protein; Provisional	98.79
PLN02490	340	MPBQ/MSBQ methyltransferase	98.78
TIGR03438	301	probable methyltransferase. This model represents	98.78
KOG1540|consensus	296		98.78
PRK04148	134	hypothetical protein; Provisional	98.77
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.77
PRK03612	521	spermidine synthase; Provisional	98.76
KOG0820|consensus	315		98.76
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.76
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.75
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.75
COG2521	287	Predicted archaeal methyltransferase [General func	98.73
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.73
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.72
PRK08317	241	hypothetical protein; Provisional	98.72
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.71
TIGR00438	188	rrmJ cell division protein FtsJ.	98.69
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.68
PLN02336	475	phosphoethanolamine N-methyltransferase	98.68
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.67
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.64
PLN02366	308	spermidine synthase	98.63
KOG1499|consensus	346		98.63
COG0286	489	HsdM Type I restriction-modification system methyl	98.62
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.57
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.57
KOG1500|consensus	517		98.55
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.55
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.54
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.53
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.51
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.5
PLN02823	336	spermine synthase	98.48
PTZ00146	293	fibrillarin; Provisional	98.47
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.45
COG4076	252	Predicted RNA methylase [General function predicti	98.45
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.43
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.42
KOG1541|consensus	270		98.42
KOG1663|consensus	237		98.33
KOG4300|consensus	252		98.29
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.21
COG3897	218	Predicted methyltransferase [General function pred	98.19
KOG3010|consensus	261		98.17
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	98.13
KOG2915|consensus	314		98.13
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.13
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.1
KOG1661|consensus	237		98.09
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	98.08
PF13679	141	Methyltransf_32: Methyltransferase domain	98.06
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.04
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.03
KOG2899|consensus	288		98.01
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.0
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.97
COG3129	292	Predicted SAM-dependent methyltransferase [General	97.97
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.94
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.92
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.92
PRK11524	284	putative methyltransferase; Provisional	97.92
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.92
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.91
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.86
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.85
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.83
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.8
PRK13699	227	putative methylase; Provisional	97.77
PRK00536	262	speE spermidine synthase; Provisional	97.69
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.68
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.65
KOG2078|consensus	495		97.62
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.62
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.61
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.6
KOG1975|consensus	389		97.59
TIGR00497	501	hsdM type I restriction system adenine methylase (	97.58
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.49
KOG1122|consensus	460		97.49
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.48
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.42
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	97.31
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.23
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.22
KOG1227|consensus	351		97.2
KOG4058|consensus	199		97.19
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	97.16
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.14
PHA01634	156	hypothetical protein	97.12
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.11
KOG2361|consensus	264		97.1
KOG2912|consensus	419		97.08
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.99
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.92
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	96.91
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	96.86
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.85
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	96.83
PLN02232	160	ubiquinone biosynthesis methyltransferase	96.66
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.63
KOG1501|consensus	636		96.62
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	96.56
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.53
KOG3045|consensus	325		96.48
COG1568	354	Predicted methyltransferases [General function pre	96.42
KOG2940|consensus	325		96.36
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.32
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.29
PRK10458	467	DNA cytosine methylase; Provisional	96.2
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.19
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.15
KOG1253|consensus	525		96.14
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	96.07
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.01
COG0863	302	DNA modification methylase [DNA replication, recom	95.84
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	95.82
KOG2198|consensus	375		95.7
KOG1269|consensus	364		95.06
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	95.0
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	94.81
KOG4589|consensus	232		94.76
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	94.72
KOG3115|consensus	249		94.71
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	94.67
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.38
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	94.24
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	93.44
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	93.3
KOG1709|consensus	271		92.9
COG2961	279	ComJ Protein involved in catabolism of external DN	92.77
KOG3178|consensus	342		92.71
KOG2360|consensus	413		92.69
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	92.62
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	91.71
KOG2651|consensus	476		91.52
PRK11524	284	putative methyltransferase; Provisional	91.41
COG2933	358	Predicted SAM-dependent methyltransferase [General	91.34
KOG3987|consensus	288		91.17
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	91.13
PRK13699	227	putative methylase; Provisional	90.44
KOG2352|consensus	482		90.26
KOG3924|consensus	419		89.99
KOG2793|consensus	248		89.65
COG0338	274	Dam Site-specific DNA methylase [DNA replication,	88.85
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	88.4
KOG2920|consensus	282		88.21
KOG0919|consensus	338		87.59
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	87.58
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	87.52
KOG0822|consensus	649		87.48
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	86.97
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	86.42
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	86.35
KOG2798|consensus	369		85.89
KOG1201|consensus	300		84.26
KOG3350|consensus	217		84.06
KOG3201|consensus	201		83.87
PRK06194	287	hypothetical protein; Provisional	83.74
PTZ00357	1072	methyltransferase; Provisional	83.6
COG3392	330	Adenine-specific DNA methylase [DNA replication, r	83.53
KOG0024|consensus	354		83.42
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	83.41
PRK07523	255	gluconate 5-dehydrogenase; Provisional	82.8
PRK08213	259	gluconate 5-dehydrogenase; Provisional	82.72
KOG1596|consensus	317		82.23
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	82.09
PRK05854	313	short chain dehydrogenase; Provisional	81.99
TIGR00571	266	dam DNA adenine methylase (dam). All proteins in t	81.69
PRK05867	253	short chain dehydrogenase; Provisional	81.56
COG1565	370	Uncharacterized conserved protein [Function unknow	81.46
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	81.07
KOG1331|consensus	293		80.56
COG1743	875	Adenine-specific DNA methylase containing a Zn-rib	80.38

>KOG2730|consensus

Probab=99.93  E-value=1.2e-26  Score=196.94  Aligned_cols=189  Identities=49%  Similarity=0.859  Sum_probs=167.5

Q ss_pred             CCChhhhcCcchhHHhhccchhhhccCcccccCCccccccCHHHHHHHHHHHhhcccccccCCCCCCHHHHHHHHHHhcC
Q psy15742        109 NVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCK  188 (342)
Q Consensus       109 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~~  188 (342)
                      ..+.....+|.+.+||.+|+.+|+++|+++.++.++|+++||+.++..++.++...+                       
T Consensus        37 ~~~~~~~~~p~l~kywk~ryrlfsrfd~gi~md~e~wfsvTpe~ia~~iA~~v~~~~-----------------------   93 (263)
T KOG2730|consen   37 IESSKPAKNPELFKYWKNRYRLFSRFDSGIYMDREGWFSVTPEKIAEHIANRVVACM-----------------------   93 (263)
T ss_pred             ccccccCCChHHHHHHHHHHHHHHhhccceeecccceEEeccHHHHHHHHHHHHHhc-----------------------
Confidence            334556677899999999999999999999999999999999999999988875332                       


Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC-----CCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-----LQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~-----~~~D~Ii~nP  263 (342)
                      ....|+|.+||.|+.++.+|..+..|++||+||.-+.+|++|++.+|++++++|++||+++....     ..+|.|+..|
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp  173 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP  173 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence            24589999999999999999999999999999999999999999999999999999999987532     2467999999


Q ss_pred             CCCCCcccc-ccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCc
Q psy15742        264 PWGGPEYAR-SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKG  322 (342)
Q Consensus       264 P~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~  322 (342)
                      ||++++|.. ..+|+..+.++  .+..++....+++++..+++|+|....+++.+..+..
T Consensus       174 pwggp~y~~~~~~DL~~~~~p--~~~~~fk~s~kispnv~~flprntdv~qls~~~~~~~  231 (263)
T KOG2730|consen  174 PWGGPSYLRADVYDLETHLKP--MGTKIFKSSLKISPNVAYFLPRNTDVNQLARLARKVL  231 (263)
T ss_pred             CCCCcchhhhhhhhhhhhcch--hHHHHHHhhhhcCcchhhhCCcchhHHHHHHhcCccc
Confidence            999999887 78899888877  5778999999999999999999999999998865543

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.89  E-value=2.8e-22  Score=187.39  Aligned_cols=132  Identities=22%  Similarity=0.311  Sum_probs=104.5

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~nPP~~  266 (342)
                      ++.+|||+|||+|.+++.+|+.+.+|+|+|+|+.+++.|++|++.+|+ ++++|+++|+.++..  ...||+|++|||+.
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~  251 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPRR  251 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence            467999999999999999999999999999999999999999999999 589999999987652  34799999999987


Q ss_pred             CCccccccccccccCcCCCCchhhhHhhhccCCCceeec---CCCCCHHHHHHhhCCCcEEEEecccCCCCCCCccccC
Q psy15742        267 GPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL---PRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQDMETV  342 (342)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~l~~~~~~~~~i~~i~~~~~fp~t~h~e~~  342 (342)
                      +...                  .+.+......++.+.++   |.+.. +++..+  .+|++..+++.||||+|+|+|+|
T Consensus       252 G~~~------------------~~~~~l~~~~~~~ivyvsc~p~t~~-rd~~~l--~~y~~~~~~~~DmFP~T~HvE~v  309 (315)
T PRK03522        252 GIGK------------------ELCDYLSQMAPRFILYSSCNAQTMA-KDLAHL--PGYRIERVQLFDMFPHTAHYEVL  309 (315)
T ss_pred             CccH------------------HHHHHHHHcCCCeEEEEECCcccch-hHHhhc--cCcEEEEEEEeccCCCCCeEEEE
Confidence            6521                  22223333344444444   33333 335444  79999999999999999999986

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.89  E-value=1.5e-22  Score=197.58  Aligned_cols=152  Identities=21%  Similarity=0.274  Sum_probs=118.0

Q ss_pred             CCCCCCH---HHHHHHHHHhc--CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy15742        170 GWYSVTP---EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ  244 (342)
Q Consensus       170 ~~~~~~~---e~~~~~i~~~~--~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~  244 (342)
                      +||+.++   +.+.+.+.+.+  .++.+|||+|||+|.+++.+|+.+.+|+|+|+|+.|++.|++|++.+++. ++++++
T Consensus       273 ~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~  351 (443)
T PRK13168        273 DFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLD-NVTFYH  351 (443)
T ss_pred             CeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEE
Confidence            4566665   56666666655  36789999999999999999998889999999999999999999999984 799999


Q ss_pred             ccccccCC-----CCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec---CCCCCHHHHHH
Q psy15742        245 GDFFALAP-----SLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL---PRTSDVFEIFH  316 (342)
Q Consensus       245 ~D~~~~~~-----~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~l~~  316 (342)
                      +|+.+...     +.+||+|++||||.+..                   ..++......++.+.++   |.++.+ ++..
T Consensus       352 ~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~-------------------~~~~~l~~~~~~~ivyvSCnp~tlaR-Dl~~  411 (443)
T PRK13168        352 ANLEEDFTDQPWALGGFDKVLLDPPRAGAA-------------------EVMQALAKLGPKRIVYVSCNPATLAR-DAGV  411 (443)
T ss_pred             eChHHhhhhhhhhcCCCCEEEECcCCcChH-------------------HHHHHHHhcCCCeEEEEEeChHHhhc-cHHH
Confidence            99976532     34799999999998752                   11122333344444444   333333 4666


Q ss_pred             hhCCCcEEEEecccCCCCCCCccccC
Q psy15742        317 DSGKKGSFISLTGRQMFSPSQDMETV  342 (342)
Q Consensus       317 ~~~~~~~i~~i~~~~~fp~t~h~e~~  342 (342)
                      +...||++..++++||||+|+|+|+|
T Consensus       412 L~~~gY~l~~i~~~DmFP~T~HvE~v  437 (443)
T PRK13168        412 LVEAGYRLKRAGMLDMFPHTGHVESM  437 (443)
T ss_pred             HhhCCcEEEEEEEeccCCCCCcEEEE
Confidence            66789999999999999999999986

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.88  E-value=2.9e-22  Score=191.24  Aligned_cols=153  Identities=18%  Similarity=0.289  Sum_probs=115.6

Q ss_pred             cCCCCCCH---HHHHHHHHHhc--CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy15742        169 DGWYSVTP---EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI  243 (342)
Q Consensus       169 ~~~~~~~~---e~~~~~i~~~~--~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~  243 (342)
                      .+||+.+.   +.+.+.+...+  .++.+|||+|||+|.+++.+|..+.+|+|+|+|+.+++.|++|++.++++ +++++
T Consensus       208 ~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~  286 (374)
T TIGR02085       208 QSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLD-NLSFA  286 (374)
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEE
Confidence            45677766   34444444443  24679999999999999999988899999999999999999999999984 89999


Q ss_pred             EccccccCC--CCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCC-CC-HHHHHHhhC
Q psy15742        244 QGDFFALAP--SLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRT-SD-VFEIFHDSG  319 (342)
Q Consensus       244 ~~D~~~~~~--~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~l~~~~~  319 (342)
                      ++|+.++..  ..+||+|++||||.|...                  .+++......++.+.+++.+ .+ .+++..+  
T Consensus       287 ~~d~~~~~~~~~~~~D~vi~DPPr~G~~~------------------~~l~~l~~~~p~~ivyvsc~p~TlaRDl~~L--  346 (374)
T TIGR02085       287 ALDSAKFATAQMSAPELVLVNPPRRGIGK------------------ELCDYLSQMAPKFILYSSCNAQTMAKDIAEL--  346 (374)
T ss_pred             ECCHHHHHHhcCCCCCEEEECCCCCCCcH------------------HHHHHHHhcCCCeEEEEEeCHHHHHHHHHHh--
Confidence            999987653  246999999999876521                  22233334555555555333 22 2335555  


Q ss_pred             CCcEEEEecccCCCCCCCccccC
Q psy15742        320 KKGSFISLTGRQMFSPSQDMETV  342 (342)
Q Consensus       320 ~~~~i~~i~~~~~fp~t~h~e~~  342 (342)
                      .||++..+++.||||+|+|+|+|
T Consensus       347 ~gy~l~~~~~~DmFPqT~HvE~v  369 (374)
T TIGR02085       347 SGYQIERVQLFDMFPHTSHYEVL  369 (374)
T ss_pred             cCceEEEEEEeccCCCCCcEEEE
Confidence            68999999999999999999986

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.88  E-value=2.4e-22  Score=167.58  Aligned_cols=124  Identities=52%  Similarity=0.937  Sum_probs=98.5

Q ss_pred             eEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCC----ccEEEEcCCCCC
Q psy15742        192 VVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ----GDVVFLSPPWGG  267 (342)
Q Consensus       192 ~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~----~D~Ii~nPP~~~  267 (342)
                      .|+|++||.|+.++++|+.+.+|+++|+|+..++.|++|++.+|+.++++++++|+.+......    +|+|+++|||+|
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWGG   81 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWGG   81 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BSS
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCCC
Confidence            6999999999999999999999999999999999999999999998899999999998864333    899999999999


Q ss_pred             Ccccc-ccccc-cccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHh
Q psy15742        268 PEYAR-SSFSI-DNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHD  317 (342)
Q Consensus       268 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~  317 (342)
                      ++|.. ..+++ ..+.|-  ++..+++..+.++++++++||+|++..++..+
T Consensus        82 p~Y~~~~~fdL~~~~~p~--~~~~l~~~~~~~t~nv~l~LPRn~dl~ql~~~  131 (163)
T PF09445_consen   82 PSYSKKDVFDLEKSMQPF--NLEDLLKAARKITPNVVLFLPRNSDLNQLSQL  131 (163)
T ss_dssp             GGGGGSSSB-TTTSSSS----HHHHHHHHHHH-S-EEEEEETTB-HHHHHHT
T ss_pred             ccccccCccCHHHccCCC--CHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHH
Confidence            99987 67888 444464  67788899999999999999999999999977

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=6.3e-22  Score=190.29  Aligned_cols=154  Identities=24%  Similarity=0.409  Sum_probs=121.2

Q ss_pred             CCCCCCH---HHHHHHHHHhcC--CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy15742        170 GWYSVTP---EKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ  244 (342)
Q Consensus       170 ~~~~~~~---e~~~~~i~~~~~--~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~  244 (342)
                      .||++++   +.+.+++.+.+.  ++++++|++||.|++++.+|+...+|+|+|+++++++.|++|++.||+. |++|+.
T Consensus       269 sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~  347 (432)
T COG2265         269 SFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID-NVEFIA  347 (432)
T ss_pred             CceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEe
Confidence            5677766   456666666665  5679999999999999999999999999999999999999999999995 599999


Q ss_pred             ccccccCCC----CCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCC-HHHHHHhhC
Q psy15742        245 GDFFALAPS----LQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSD-VFEIFHDSG  319 (342)
Q Consensus       245 ~D~~~~~~~----~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~  319 (342)
                      +|+.++...    ..+|+|+.|||+.|.+.                 ..+..+.+...+.++|+.++-.+ .+++..+..
T Consensus       348 ~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~-----------------~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~~  410 (432)
T COG2265         348 GDAEEFTPAWWEGYKPDVVVVDPPRAGADR-----------------EVLKQLAKLKPKRIVYVSCNPATLARDLAILAS  410 (432)
T ss_pred             CCHHHHhhhccccCCCCEEEECCCCCCCCH-----------------HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh
Confidence            999988633    37899999999998841                 12223333334445555522222 334777778


Q ss_pred             CCcEEEEecccCCCCCCCcccc
Q psy15742        320 KKGSFISLTGRQMFSPSQDMET  341 (342)
Q Consensus       320 ~~~~i~~i~~~~~fp~t~h~e~  341 (342)
                      .++++.++.++||||+|+|+|+
T Consensus       411 ~gy~i~~v~~~DmFP~T~HvE~  432 (432)
T COG2265         411 TGYEIERVQPFDMFPHTHHVEA  432 (432)
T ss_pred             CCeEEEEEEEeccCCCccccCC
Confidence            8999999999999999999996

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.87  E-value=9.2e-22  Score=186.87  Aligned_cols=153  Identities=17%  Similarity=0.255  Sum_probs=115.0

Q ss_pred             cCCCCCCH---HHHHHHHHHhcCC-CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy15742        169 DGWYSVTP---EKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ  244 (342)
Q Consensus       169 ~~~~~~~~---e~~~~~i~~~~~~-~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~  244 (342)
                      .+||+.++   +.+.+.+.+.+.. +.++||+|||+|.+++.+++.+.+|+|+|.|+.+++.|++|+..+|++ ++++++
T Consensus       182 ~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~  260 (362)
T PRK05031        182 NSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGID-NVQIIR  260 (362)
T ss_pred             CCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEE
Confidence            45777774   5677777766643 357999999999999999988889999999999999999999999984 899999


Q ss_pred             ccccccCC-----------------CCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCC
Q psy15742        245 GDFFALAP-----------------SLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPR  307 (342)
Q Consensus       245 ~D~~~~~~-----------------~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (342)
                      +|+.++.+                 ..+||+|++||||.|...                  .++..... .+.++|+.+.
T Consensus       261 ~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~------------------~~l~~l~~-~~~ivyvSC~  321 (362)
T PRK05031        261 MSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDD------------------ETLKLVQA-YERILYISCN  321 (362)
T ss_pred             CCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcH------------------HHHHHHHc-cCCEEEEEeC
Confidence            99987531                 125899999999876521                  12222222 3444554422


Q ss_pred             CCC-HHHHHHhhCCCcEEEEecccCCCCCCCccccC
Q psy15742        308 TSD-VFEIFHDSGKKGSFISLTGRQMFSPSQDMETV  342 (342)
Q Consensus       308 ~~~-~~~l~~~~~~~~~i~~i~~~~~fp~t~h~e~~  342 (342)
                      -.+ .+++..+. .+|++..+++.||||+|+|+|+|
T Consensus       322 p~tlarDl~~L~-~gY~l~~v~~~DmFPqT~HvE~v  356 (362)
T PRK05031        322 PETLCENLETLS-QTHKVERFALFDQFPYTHHMECG  356 (362)
T ss_pred             HHHHHHHHHHHc-CCcEEEEEEEcccCCCCCcEEEE
Confidence            222 33455554 48999999999999999999986

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.87  E-value=6.7e-22  Score=187.01  Aligned_cols=152  Identities=25%  Similarity=0.430  Sum_probs=102.0

Q ss_pred             cCCCCCCH---HHHHHHHHHhcCC-CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy15742        169 DGWYSVTP---EKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ  244 (342)
Q Consensus       169 ~~~~~~~~---e~~~~~i~~~~~~-~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~  244 (342)
                      .+||++++   +.+++.+.+.++. +..+||++||+|++++.+|..+.+|+|||+++.+++.|++|++.|++ ++++|++
T Consensus       172 ~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~  250 (352)
T PF05958_consen  172 GSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIR  250 (352)
T ss_dssp             TS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE
T ss_pred             CcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEE
Confidence            45666665   4555666666653 34899999999999999999999999999999999999999999999 4899999


Q ss_pred             ccccccCC-----------------CCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec--
Q psy15742        245 GDFFALAP-----------------SLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL--  305 (342)
Q Consensus       245 ~D~~~~~~-----------------~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--  305 (342)
                      +++.++..                 ...+|+|+.|||+.|.+.                  .+++..... +.++|+.  
T Consensus       251 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~------------------~~~~~~~~~-~~ivYvSCn  311 (352)
T PF05958_consen  251 GDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDE------------------KVIELIKKL-KRIVYVSCN  311 (352)
T ss_dssp             --SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCH------------------HHHHHHHHS-SEEEEEES-
T ss_pred             eeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchH------------------HHHHHHhcC-CeEEEEECC
Confidence            88765421                 126899999999999842                  222333333 5566665  


Q ss_pred             CCCCCHHHHHHhhCCCcEEEEecccCCCCCCCccccC
Q psy15742        306 PRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQDMETV  342 (342)
Q Consensus       306 ~~~~~~~~l~~~~~~~~~i~~i~~~~~fp~t~h~e~~  342 (342)
                      |.++ .+++..+. .+|++..+.++||||+|+|+|+|
T Consensus       312 P~tl-aRDl~~L~-~~y~~~~v~~~DmFP~T~HvE~v  346 (352)
T PF05958_consen  312 PATL-ARDLKILK-EGYKLEKVQPVDMFPQTHHVETV  346 (352)
T ss_dssp             HHHH-HHHHHHHH-CCEEEEEEEEE-SSTTSS--EEE
T ss_pred             HHHH-HHHHHHHh-hcCEEEEEEEeecCCCCCcEEEE
Confidence            3333 33355554 69999999999999999999985

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.86  E-value=2.1e-21  Score=183.79  Aligned_cols=152  Identities=15%  Similarity=0.248  Sum_probs=113.7

Q ss_pred             cCCCCCCH---HHHHHHHHHhcC-CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy15742        169 DGWYSVTP---EKVAQHIASRCK-ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ  244 (342)
Q Consensus       169 ~~~~~~~~---e~~~~~i~~~~~-~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~  244 (342)
                      .+||+.++   +.+++.+.+... .+.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.|++|++.++++ ++++++
T Consensus       173 ~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~  251 (353)
T TIGR02143       173 NSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNID-NVQIIR  251 (353)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEE
Confidence            45676665   556666666654 2347999999999999999998889999999999999999999999984 799999


Q ss_pred             ccccccCCC-----------------CCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec--
Q psy15742        245 GDFFALAPS-----------------LQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL--  305 (342)
Q Consensus       245 ~D~~~~~~~-----------------~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--  305 (342)
                      +|+.++...                 ..||+|++|||+.|...                  .+++.... .+.++|+.  
T Consensus       252 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~------------------~~l~~l~~-~~~ivYvsC~  312 (353)
T TIGR02143       252 MSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDP------------------DTCKLVQA-YERILYISCN  312 (353)
T ss_pred             cCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcH------------------HHHHHHHc-CCcEEEEEcC
Confidence            999875421                 13899999999876521                  22222222 34445544  


Q ss_pred             CCCCCHHHHHHhhCCCcEEEEecccCCCCCCCccccC
Q psy15742        306 PRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQDMETV  342 (342)
Q Consensus       306 ~~~~~~~~l~~~~~~~~~i~~i~~~~~fp~t~h~e~~  342 (342)
                      |.++ .+++..+. .+|++..++++||||+|+|+|+|
T Consensus       313 p~tl-aRDl~~L~-~~Y~l~~v~~~DmFP~T~HvE~v  347 (353)
T TIGR02143       313 PETL-KANLEQLS-ETHRVERFALFDQFPYTHHMECG  347 (353)
T ss_pred             HHHH-HHHHHHHh-cCcEEEEEEEcccCCCCCcEEEE
Confidence            2222 23355554 55999999999999999999986

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.83  E-value=5.7e-20  Score=179.11  Aligned_cols=153  Identities=20%  Similarity=0.394  Sum_probs=115.7

Q ss_pred             cCCCCCCHH---HHHHHHHHhc--CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy15742        169 DGWYSVTPE---KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI  243 (342)
Q Consensus       169 ~~~~~~~~e---~~~~~i~~~~--~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~  243 (342)
                      ..||+.+++   .+.+.+...+  .++.+|||+|||+|.+++.+|+.+.+|+|+|+|+.+++.|++|++.+++ ++++++
T Consensus       267 ~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~  345 (431)
T TIGR00479       267 RDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-ANVEFL  345 (431)
T ss_pred             CceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEE
Confidence            457777764   4455555544  4667999999999999999999888999999999999999999999998 489999


Q ss_pred             EccccccCC-----CCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCC--CHHHHHH
Q psy15742        244 QGDFFALAP-----SLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTS--DVFEIFH  316 (342)
Q Consensus       244 ~~D~~~~~~-----~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~l~~  316 (342)
                      ++|+.+..+     ...||+|++|||+.+...                  .+++......++.+.+++.+-  -..++..
T Consensus       346 ~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~~------------------~~l~~l~~l~~~~ivyvsc~p~tlard~~~  407 (431)
T TIGR00479       346 AGTLETVLPKQPWAGQIPDVLLLDPPRKGCAA------------------EVLRTIIELKPERIVYVSCNPATLARDLEF  407 (431)
T ss_pred             eCCHHHHHHHHHhcCCCCCEEEECcCCCCCCH------------------HHHHHHHhcCCCEEEEEcCCHHHHHHHHHH
Confidence            999976532     346999999999876421                  222222334455555543332  1234556


Q ss_pred             hhCCCcEEEEecccCCCCCCCccc
Q psy15742        317 DSGKKGSFISLTGRQMFSPSQDME  340 (342)
Q Consensus       317 ~~~~~~~i~~i~~~~~fp~t~h~e  340 (342)
                      +...+|++..+.+.||||+|+|+|
T Consensus       408 l~~~gy~~~~~~~~DmFP~T~HvE  431 (431)
T TIGR00479       408 LCKEGYGITWVQPVDMFPHTAHVE  431 (431)
T ss_pred             HHHCCeeEEEEEEeccCCCCCCCC
Confidence            667789999999999999999998

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.76  E-value=2.3e-18  Score=162.67  Aligned_cols=117  Identities=25%  Similarity=0.296  Sum_probs=93.7

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccC-----CCCCccEEEEc
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA-----PSLQGDVVFLS  262 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~-----~~~~~D~Ii~n  262 (342)
                      |++|||++|+||++++++|..|+ +||+||+|..++++|++|++.||++ +++.|+++|+++++     ...+||+||+|
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD  297 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD  297 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence            89999999999999999999866 9999999999999999999999985 57899999999987     23489999999


Q ss_pred             CCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHH
Q psy15742        263 PPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVF  312 (342)
Q Consensus       263 PP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  312 (342)
                      ||    ++.+..........+  -...+..+...+++++.+++++|....
T Consensus       298 PP----sF~r~k~~~~~~~rd--y~~l~~~~~~iL~pgG~l~~~s~~~~~  341 (393)
T COG1092         298 PP----SFARSKKQEFSAQRD--YKDLNDLALRLLAPGGTLVTSSCSRHF  341 (393)
T ss_pred             Cc----ccccCcccchhHHHH--HHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence            99    776633333222222  112556677788888888887666544

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.66  E-value=7.1e-17  Score=147.13  Aligned_cols=137  Identities=24%  Similarity=0.368  Sum_probs=90.6

Q ss_pred             CCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccC----CCCCccEEEEcC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA----PSLQGDVVFLSP  263 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~----~~~~~D~Ii~nP  263 (342)
                      |++|||++|.||+++++++..| .+|++||.|..++++|++|++.||++ ++++++++|+++++    ..++||+||+||
T Consensus       124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP  203 (286)
T PF10672_consen  124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP  203 (286)
T ss_dssp             TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred             CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence            8899999999999999999885 58999999999999999999999986 68999999999865    245899999999


Q ss_pred             CCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCC---HHHHHH---hhCCCcEEEEec-ccCCCCC
Q psy15742        264 PWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSD---VFEIFH---DSGKKGSFISLT-GRQMFSP  335 (342)
Q Consensus       264 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~l~~---~~~~~~~i~~i~-~~~~fp~  335 (342)
                      |    ++.+..+++.+-++.     .+..+...+.+++.+++++++.   ...+.+   ...+.+++.+.. ...-||.
T Consensus       204 P----sF~k~~~~~~~~y~~-----L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~~~~~~~~~~p~df~~  273 (286)
T PF10672_consen  204 P----SFAKSKFDLERDYKK-----LLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAREVEFIERLGQPPDFPD  273 (286)
T ss_dssp             S----SEESSTCEHHHHHHH-----HHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHHCEEEEEEE-------
T ss_pred             C----CCCCCHHHHHHHHHH-----HHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCccceEeeeecccccccc
Confidence            9    777766665544433     4555666777887777644442   222222   223455555443 3334655

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.65  E-value=1e-15  Score=157.05  Aligned_cols=145  Identities=18%  Similarity=0.215  Sum_probs=98.1

Q ss_pred             CCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccCC--CCCccEEEEcCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALAP--SLQGDVVFLSPPW  265 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~~--~~~~D~Ii~nPP~  265 (342)
                      |.+|||+|||||++++.+++.| .+|+++|+|+.+++.|++|++.||+. ++++++++|+.+++.  ..+||+||+||||
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~  618 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT  618 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence            7899999999999999999985 57999999999999999999999996 589999999988752  4589999999998


Q ss_pred             CCCcccc-ccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHH--HHHhhCCCcEEEEecccC---CCCCCCcc
Q psy15742        266 GGPEYAR-SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFE--IFHDSGKKGSFISLTGRQ---MFSPSQDM  339 (342)
Q Consensus       266 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--l~~~~~~~~~i~~i~~~~---~fp~t~h~  339 (342)
                      ....... ...+....++.     .+....+.+.+++.+++..+.....  .......++.+..+....   -||.+..+
T Consensus       619 f~~~~~~~~~~~~~~~y~~-----l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~Dhp~~~~~  693 (702)
T PRK11783        619 FSNSKRMEDSFDVQRDHVA-----LIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITAKTLPPDFARNPKI  693 (702)
T ss_pred             CCCCCccchhhhHHHHHHH-----HHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEecCCCCCCCCCCccc
Confidence            7542110 11111111121     3333455677777777744444221  222223345554444333   26655543

>KOG2187|consensus

Probab=99.65  E-value=5.5e-16  Score=147.54  Aligned_cols=154  Identities=21%  Similarity=0.325  Sum_probs=110.9

Q ss_pred             CCCCCCH---HHHHHHHHHh--cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy15742        170 GWYSVTP---EKVAQHIASR--CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ  244 (342)
Q Consensus       170 ~~~~~~~---e~~~~~i~~~--~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~  244 (342)
                      .||+.++   |.+-..+.+.  ++.+..++|++||||.+++.+|+...+|+||++++.+++.|+.|++.||++ |.+|++
T Consensus       359 AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~  437 (534)
T KOG2187|consen  359 AFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIV  437 (534)
T ss_pred             hhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcc-ceeeee
Confidence            4666655   4445555554  356789999999999999999999999999999999999999999999995 899999


Q ss_pred             ccccccCCC------CCcc-EEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCC--HHHHH
Q psy15742        245 GDFFALAPS------LQGD-VVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSD--VFEIF  315 (342)
Q Consensus       245 ~D~~~~~~~------~~~D-~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~l~  315 (342)
                      |-+++..+.      ..-+ ++++|||+.|.+..                 .+..+.....+..+.|.+.|-.  ..++.
T Consensus       438 gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~-----------------~ik~l~~~~~~~rlvyvSCn~~t~ar~v~  500 (534)
T KOG2187|consen  438 GQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMK-----------------VIKALRAYKNPRRLVYVSCNPHTAARNVI  500 (534)
T ss_pred             cchhhccchhcccCCCCCceEEEECCCcccccHH-----------------HHHHHHhccCccceEEEEcCHHHhhhhHH
Confidence            977665421      1345 88999999887531                 2222222332333333333333  23333


Q ss_pred             Hhh--------CCCcEEEEecccCCCCCCCcccc
Q psy15742        316 HDS--------GKKGSFISLTGRQMFSPSQDMET  341 (342)
Q Consensus       316 ~~~--------~~~~~i~~i~~~~~fp~t~h~e~  341 (342)
                      .++        ...|++..+.+.|+||+|+|+|+
T Consensus       501 ~lc~~~~~~~~~g~fr~~~~~~VDlfP~T~h~E~  534 (534)
T KOG2187|consen  501 DLCSSPKYRLKKGFFRLVKAVGVDLFPHTPHCEM  534 (534)
T ss_pred             HhhcCccccccccccceeeeeecccCCCCCcCCC
Confidence            333        23578999999999999999995

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.63  E-value=6.2e-15  Score=126.59  Aligned_cols=125  Identities=28%  Similarity=0.433  Sum_probs=92.0

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCE---------EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQK---------VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSL  254 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~---------v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~  254 (342)
                      .+++..|+|++||+|++.+++|..  ...         ++|+|+++.+++.|+.|++..|+.+.+.+.+.|+.+++ ..+
T Consensus        26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~  105 (179)
T PF01170_consen   26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG  105 (179)
T ss_dssp             --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred             CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence            346889999999999999999886  333         78999999999999999999999888999999999998 667


Q ss_pred             CccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhh
Q psy15742        255 QGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDS  318 (342)
Q Consensus       255 ~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~  318 (342)
                      .+|+|++||||+...  ....+..++++.     .+.++.+.+.+..++.++.+....+.....
T Consensus       106 ~~d~IvtnPPyG~r~--~~~~~~~~ly~~-----~~~~~~~~l~~~~v~l~~~~~~~~~~~~~~  162 (179)
T PF01170_consen  106 SVDAIVTNPPYGRRL--GSKKDLEKLYRQ-----FLRELKRVLKPRAVFLTTSNRELEKALGLK  162 (179)
T ss_dssp             BSCEEEEE--STTSH--CHHHHHHHHHHH-----HHHHHHCHSTTCEEEEEESCCCHHHHHTST
T ss_pred             CCCEEEECcchhhhc--cCHHHHHHHHHH-----HHHHHHHHCCCCEEEEEECCHHHHHHhcch
Confidence            899999999999763  222334455554     444555557777788888888887776653

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.61  E-value=4.5e-15  Score=131.65  Aligned_cols=141  Identities=16%  Similarity=0.132  Sum_probs=102.0

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC---CCCccEEEEcCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVFLSPP  264 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~---~~~~D~Ii~nPP  264 (342)
                      ..+|||+|||+|.+++.+|++  ..+++|||+++++.+.|++|++.++++++++++++|+.++.+   ..+||+|+||||
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP  124 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP  124 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence            679999999999999999987  389999999999999999999999999999999999998863   236999999999


Q ss_pred             CCCCcccc---ccccccccCcCCCCchhhhHhhh-ccCCCc-eeecCCCCCHHHHHHhhCC-CcEEEEecccC
Q psy15742        265 WGGPEYAR---SSFSIDNIFPEQGGGRRLFQVAR-GISPNV-GYYLPRTSDVFEIFHDSGK-KGSFISLTGRQ  331 (342)
Q Consensus       265 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~l~~~~~~~~l~~~~~~-~~~i~~i~~~~  331 (342)
                      |...+...   ...++.+....+ ....++..+. .+.+++ +.++.+--+..++..++.. ++.+..++...
T Consensus       125 yf~~~~~~~~~~~~~~Ar~e~~~-~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~  196 (248)
T COG4123         125 YFKQGSRLNENPLRAIARHEITL-DLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVY  196 (248)
T ss_pred             CCCCccccCcChhhhhhhhhhcC-CHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEEEec
Confidence            99876541   233333333321 1223343333 344444 4455666666666766655 55555555443

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.61  E-value=1.7e-15  Score=120.76  Aligned_cols=79  Identities=30%  Similarity=0.518  Sum_probs=70.1

Q ss_pred             CCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPPW  265 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nPP~  265 (342)
                      |.+|||+|||+|.+++.+++.+ .+++|+|+|+.++++|+.|+..+++.++++++++|+.+..   +..+||+|++||||
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            4589999999999999999987 9999999999999999999999999788999999998875   56799999999999


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      ...
T Consensus        81 ~~~   83 (117)
T PF13659_consen   81 GPR   83 (117)
T ss_dssp             TSB
T ss_pred             ccc
Confidence            864

...

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.61  E-value=9.4e-15  Score=124.61  Aligned_cols=79  Identities=30%  Similarity=0.519  Sum_probs=68.7

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~--~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      ++.+|||+|||+|.+++.+++.+.  +|+++|+|+.+++.|++|++.+++++ ++++.+|+.+..+..+||+|++|||++
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~  109 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH  109 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence            477999999999999999999843  59999999999999999999999964 999999999887778999999999976


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       110 ~~  111 (170)
T PF05175_consen  110 AG  111 (170)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=99.59  E-value=5.1e-15  Score=138.06  Aligned_cols=151  Identities=23%  Similarity=0.355  Sum_probs=108.7

Q ss_pred             cccccCCccccccCHHHHHHHHHHHhhcccccccCCCCCCHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCC---
Q psy15742        136 EGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ---  212 (342)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~---  212 (342)
                      +|-.++.++|+.....   ..+.+.++.......+|..                +..++|+.||+|++.+++|..+.   
T Consensus       157 tG~sLhkRGyR~~~g~---ApLketLAaAil~lagw~~----------------~~pl~DPmCGSGTi~IEAAl~~~niA  217 (381)
T COG0116         157 TGDSLHKRGYRVYDGP---APLKETLAAAILLLAGWKP----------------DEPLLDPMCGSGTILIEAALIAANIA  217 (381)
T ss_pred             CCcchhhccccccCCC---CCchHHHHHHHHHHcCCCC----------------CCccccCCCCccHHHHHHHHhccccC
Confidence            6678889999865432   2333333322222334443                67899999999999999998753   


Q ss_pred             --------------------------------------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC-
Q psy15742        213 --------------------------------------KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-  253 (342)
Q Consensus       213 --------------------------------------~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~-  253 (342)
                                                            .++|+|+|+.+++.|+.|++..|+.+.|+|.++|+.++.+. 
T Consensus       218 Pg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~  297 (381)
T COG0116         218 PGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL  297 (381)
T ss_pred             CccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC
Confidence                                                  37799999999999999999999999999999999998765 


Q ss_pred             CCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHH
Q psy15742        254 LQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVF  312 (342)
Q Consensus       254 ~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  312 (342)
                      ..+|+||+||||+..  ......+..+++.     ....+.+.+.....+++..+-...
T Consensus       298 ~~~gvvI~NPPYGeR--lg~~~~v~~LY~~-----fg~~lk~~~~~ws~~v~tt~e~~~  349 (381)
T COG0116         298 EEYGVVISNPPYGER--LGSEALVAKLYRE-----FGRTLKRLLAGWSRYVFTTSEDLL  349 (381)
T ss_pred             CcCCEEEeCCCcchh--cCChhhHHHHHHH-----HHHHHHHHhcCCceEEEEccHHHH
Confidence            789999999999965  3333445556554     333444556666666664444433

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.58  E-value=3e-14  Score=135.41  Aligned_cols=93  Identities=24%  Similarity=0.353  Sum_probs=80.2

Q ss_pred             CHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-
Q psy15742        175 TPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-  251 (342)
Q Consensus       175 ~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-  251 (342)
                      .++.+++.+...++++.+|||+|||+|.+++.+++.  +.+|+|+|+|+.+++.|++|++.++.  +++++++|+.+.. 
T Consensus       237 eTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l  314 (423)
T PRK14966        237 ETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDM  314 (423)
T ss_pred             cHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcccc
Confidence            347888888887777789999999999999999875  67999999999999999999998886  7999999997642 


Q ss_pred             -CCCCccEEEEcCCCCCCc
Q psy15742        252 -PSLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       252 -~~~~~D~Ii~nPP~~~~~  269 (342)
                       ...+||+|++||||....
T Consensus       315 ~~~~~FDLIVSNPPYI~~~  333 (423)
T PRK14966        315 PSEGKWDIIVSNPPYIENG  333 (423)
T ss_pred             ccCCCccEEEECCCCCCcc
Confidence             245799999999998654

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.58  E-value=8.3e-15  Score=132.21  Aligned_cols=137  Identities=13%  Similarity=0.176  Sum_probs=105.8

Q ss_pred             ccCCCCCCChhhhcCcchhHHhhccchhhhccCcccccCCccccccCHHHHHHHHHHHhhcccccccCCCCCCHHHHHHH
Q psy15742        103 DLGDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQH  182 (342)
Q Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~  182 (342)
                      ......++..+|+.++++++.|.++...++.          .+|......+.+.....+                   +.
T Consensus        13 ~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Ysc----------ayf~~~~~tL~eAQ~~k~-------------------~~   63 (283)
T COG2230          13 KRRAAENIQAHYDLSNDFYRLFLDPSMTYSC----------AYFEDPDMTLEEAQRAKL-------------------DL   63 (283)
T ss_pred             ccchhhhhhhHhhcchHHHHHhcCCCCceee----------EEeCCCCCChHHHHHHHH-------------------HH
Confidence            3455668889999999999999999887775          333222111111111111                   23


Q ss_pred             HHHh--cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEE
Q psy15742        183 IASR--CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVV  259 (342)
Q Consensus       183 i~~~--~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~I  259 (342)
                      +++.  +++|.+|||+|||+|.+++++|+. +.+|+|+++|+++.+.+++.++..|++++++++..|..++.+  .||.|
T Consensus        64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e--~fDrI  141 (283)
T COG2230          64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE--PFDRI  141 (283)
T ss_pred             HHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc--cccee
Confidence            3333  578999999999999999999998 899999999999999999999999998899999999999854  49999


Q ss_pred             EEcCCCCCCcc
Q psy15742        260 FLSPPWGGPEY  270 (342)
Q Consensus       260 i~nPP~~~~~~  270 (342)
                      ++=-.|.....
T Consensus       142 vSvgmfEhvg~  152 (283)
T COG2230         142 VSVGMFEHVGK  152 (283)
T ss_pred             eehhhHHHhCc
Confidence            99777666543

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=1.2e-14  Score=122.14  Aligned_cols=75  Identities=29%  Similarity=0.462  Sum_probs=68.2

Q ss_pred             CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~  268 (342)
                      |.+|+|+|||||.+++.++.. +.+|+|+|+|+++++.++.|+.+.+  +++.|+.+|+.++  .+.+|.+++||||+..
T Consensus        46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~~--~~~~dtvimNPPFG~~  121 (198)
T COG2263          46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSDF--RGKFDTVIMNPPFGSQ  121 (198)
T ss_pred             CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhhc--CCccceEEECCCCccc
Confidence            678999999999999999987 5899999999999999999999843  5899999999988  5679999999999965

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.58  E-value=1.3e-14  Score=139.09  Aligned_cols=142  Identities=18%  Similarity=0.188  Sum_probs=95.4

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccC-----CCCCccEEEE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA-----PSLQGDVVFL  261 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~-----~~~~~D~Ii~  261 (342)
                      ++.+|||+|||||++++.++.. +.+|+++|+|+.+++.|++|++.||++ ++++++++|+.+++     ...+||+||+
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil  299 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence            3789999999999999988776 459999999999999999999999985 47999999999875     2358999999


Q ss_pred             cCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCC---CCHHH-------HHHhhCCCcEEEEecccC
Q psy15742        262 SPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRT---SDVFE-------IFHDSGKKGSFISLTGRQ  331 (342)
Q Consensus       262 nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~-------l~~~~~~~~~i~~i~~~~  331 (342)
                      ||||...+.    .++......  -...+......+.+++.+++.++   .....       .+...++.++++....++
T Consensus       300 DPP~f~~~k----~~l~~~~~~--y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~~~~~~  373 (396)
T PRK15128        300 DPPKFVENK----SQLMGACRG--YKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQA  373 (396)
T ss_pred             CCCCCCCCh----HHHHHHHHH--HHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEEcCCC
Confidence            999854431    111111110  00022233445566666665333   22222       223345677777766554


Q ss_pred             C-CCCC
Q psy15742        332 M-FSPS  336 (342)
Q Consensus       332 ~-fp~t  336 (342)
                      . ||..
T Consensus       374 ~DhP~~  379 (396)
T PRK15128        374 ADHPVI  379 (396)
T ss_pred             CCCCCC
Confidence            3 4433

>PHA03412 putative methyltransferase; Provisional

Probab=99.57  E-value=1.8e-14  Score=126.85  Aligned_cols=113  Identities=16%  Similarity=0.302  Sum_probs=80.8

Q ss_pred             CCeEEeccCCCcHHHHHHHHh-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV-----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  264 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~-----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP  264 (342)
                      +.+|||+|||+|.+++.+++.     ..+|+|+|+|+.++++|++|..      ++.++++|+.......+||+||+|||
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNPP  123 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNPP  123 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECCC
Confidence            669999999999999999874     3589999999999999998863      57899999987655568999999999


Q ss_pred             CCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHH
Q psy15742        265 WGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVF  312 (342)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  312 (342)
                      |.........   .. .....-...++..+..+.+.+.+++|.++--+
T Consensus       124 Y~~~~~~d~~---ar-~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~  167 (241)
T PHA03412        124 FGKIKTSDFK---GK-YTGAEFEYKVIERASQIARQGTFIIPQMSANF  167 (241)
T ss_pred             CCCccccccC---Cc-ccccHHHHHHHHHHHHHcCCCEEEeCcccccC
Confidence            9975421110   00 00000112344444456777777888776444

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=1.2e-14  Score=133.17  Aligned_cols=91  Identities=27%  Similarity=0.389  Sum_probs=74.9

Q ss_pred             HHHHHHHHHhcCCCC-eEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC
Q psy15742        177 EKVAQHIASRCKASD-VVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS  253 (342)
Q Consensus       177 e~~~~~i~~~~~~~~-~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~  253 (342)
                      +.+++.+........ +|||+|||||.+++.+|..+  .+|+|+|+|+.+++.|++|+..+|+ .++.++.+|+++....
T Consensus        97 e~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~  175 (280)
T COG2890          97 ELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRG  175 (280)
T ss_pred             HHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCC
Confidence            444454433332223 69999999999999999985  4999999999999999999999998 6788888898887655


Q ss_pred             CCccEEEEcCCCCCCc
Q psy15742        254 LQGDVVFLSPPWGGPE  269 (342)
Q Consensus       254 ~~~D~Ii~nPP~~~~~  269 (342)
                       +||+|++||||-..+
T Consensus       176 -~fDlIVsNPPYip~~  190 (280)
T COG2890         176 -KFDLIVSNPPYIPAE  190 (280)
T ss_pred             -ceeEEEeCCCCCCCc
Confidence             899999999999875

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.56  E-value=8.2e-14  Score=128.51  Aligned_cols=80  Identities=28%  Similarity=0.434  Sum_probs=71.5

Q ss_pred             CeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742        191 DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~  268 (342)
                      .+|||+|||+|.+++.++..  ..+|+|+|+|+.+++.|++|++.+++.++++++++|+.+..+..+||+|++||||...
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE  195 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence            68999999999999999986  4699999999999999999999999866799999999876554589999999999876


Q ss_pred             cc
Q psy15742        269 EY  270 (342)
Q Consensus       269 ~~  270 (342)
                      +.
T Consensus       196 ~~  197 (284)
T TIGR00536       196 ED  197 (284)
T ss_pred             ch
Confidence            43

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.55  E-value=5.6e-14  Score=129.42  Aligned_cols=81  Identities=28%  Similarity=0.448  Sum_probs=72.5

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      ++.+|||+|||+|.+++.+++.  +.+|+|+|+|+.+++.|++|++.+++.++++++++|+.+..+..+||+|++||||.
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~  200 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV  200 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence            3568999999999999999986  57999999999999999999999998778999999998765555899999999998


Q ss_pred             CCc
Q psy15742        267 GPE  269 (342)
Q Consensus       267 ~~~  269 (342)
                      ..+
T Consensus       201 ~~~  203 (284)
T TIGR03533       201 DAE  203 (284)
T ss_pred             Ccc
Confidence            754

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.54  E-value=1.1e-13  Score=130.19  Aligned_cols=130  Identities=25%  Similarity=0.378  Sum_probs=93.9

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEcCCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPPW  265 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nPP~  265 (342)
                      ++++.+|||+|||||++++.++..+.+++|+|+|+.|++.|+.|++.+|++ ++.++++|+.+.+. ...||+|++||||
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~-~i~~~~~D~~~l~~~~~~~D~Iv~dPPy  258 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-DFFVKRGDATKLPLSSESVDAIATDPPY  258 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC-CCeEEecchhcCCcccCCCCEEEECCCC
Confidence            567889999999999999999888999999999999999999999999986 48999999998763 4689999999999


Q ss_pred             CCCccccccccccccCcCCCCchhhhHhhhccCCC--ceeecCCCCCHHHHHHhhCCCcEEEE
Q psy15742        266 GGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPN--VGYYLPRTSDVFEIFHDSGKKGSFIS  326 (342)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~l~~~~~~~~~i~~  326 (342)
                      +....... .....+...     .+.+..+.+.++  .++.+|.......+.+.  .|+ +..
T Consensus       259 g~~~~~~~-~~~~~l~~~-----~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~~~--~g~-i~~  312 (329)
T TIGR01177       259 GRSTTAAG-DGLESLYER-----SLEEFHEVLKSEGWIVYAVPTRIDLESLAED--AFR-VVK  312 (329)
T ss_pred             cCcccccC-CchHHHHHH-----HHHHHHHHccCCcEEEEEEcCCCCHHHHHhh--cCc-chh
Confidence            87542211 001111121     333444555554  44555776666655444  345 443

This family is found exclusively in the Archaea.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.53  E-value=1.4e-13  Score=136.13  Aligned_cols=81  Identities=23%  Similarity=0.316  Sum_probs=72.4

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      +.+|||+|||+|.+++.++..  +.+|+|+|+|+.+++.|+.|+..+++.++++++++|+.+..+..+||+|++||||..
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~  218 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS  218 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence            468999999999999999875  679999999999999999999999987789999999887655568999999999998


Q ss_pred             Ccc
Q psy15742        268 PEY  270 (342)
Q Consensus       268 ~~~  270 (342)
                      .+.
T Consensus       219 ~~~  221 (506)
T PRK01544        219 HSE  221 (506)
T ss_pred             chh
Confidence            654

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.53  E-value=2e-13  Score=126.98  Aligned_cols=79  Identities=28%  Similarity=0.455  Sum_probs=71.6

Q ss_pred             CeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742        191 DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~  268 (342)
                      .+|||+|||+|.+++.++..  +.+|+|+|+|+.+++.|++|++.+++.++++++++|+.+..+..+||+|++||||.+.
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~  214 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA  214 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence            68999999999999999987  5799999999999999999999999876899999999876655689999999999876


Q ss_pred             c
Q psy15742        269 E  269 (342)
Q Consensus       269 ~  269 (342)
                      +
T Consensus       215 ~  215 (307)
T PRK11805        215 E  215 (307)
T ss_pred             c
Confidence            4

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.53  E-value=8e-14  Score=121.33  Aligned_cols=78  Identities=15%  Similarity=0.306  Sum_probs=67.6

Q ss_pred             CCCeEEeccCCCcHHHHHHHH-hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEEcCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAA-VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPW  265 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~-~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~nPP~  265 (342)
                      ++.+|||+|||+|.+++.++. .+.+|+++|.++.+++.|++|++.+++. +++++++|+.++.+  ...||+|++||||
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPPy  131 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPPF  131 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence            467999999999999997544 4689999999999999999999999984 79999999987652  3469999999998


Q ss_pred             CC
Q psy15742        266 GG  267 (342)
Q Consensus       266 ~~  267 (342)
                      ..
T Consensus       132 ~~  133 (199)
T PRK10909        132 RK  133 (199)
T ss_pred             CC
Confidence            64

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.51  E-value=5.1e-14  Score=128.52  Aligned_cols=132  Identities=15%  Similarity=0.212  Sum_probs=84.9

Q ss_pred             CCCCCCChhhhcCcchhHHhhccchhhhccCcccccCCccccccCHHHHHHHHHHHhhcccccccCCCCCCHHHHHHHHH
Q psy15742        105 GDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIA  184 (342)
Q Consensus       105 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~i~  184 (342)
                      ++..++..+|+.+++++..|.++...++.          ++|....+.+.+.....+                   +.++
T Consensus         5 ~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~----------~~~~~~~~~Le~AQ~~k~-------------------~~~~   55 (273)
T PF02353_consen    5 QSRENISAHYDLGNDFYRLFLDPTMKYSC----------AYFDEGDDTLEEAQERKL-------------------DLLC   55 (273)
T ss_dssp             --HHHHHHHHTS-HHHHTTTS-TT---S--------------SSTT--HHHHHHHHH-------------------HHHH
T ss_pred             hHHHHHHHHcCCcHHHHHHhcCCCCCCCC----------eecCCchhhHHHHHHHHH-------------------HHHH
Confidence            34445667899999999999998776664          233222232323222222                   3444


Q ss_pred             Hh--cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742        185 SR--CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  261 (342)
Q Consensus       185 ~~--~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~  261 (342)
                      +.  +++|.+|||+|||+|++++.+|+. |.+|+|+++|+++.+.|++.++..|+++++++..+|..++..  +||.|++
T Consensus        56 ~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--~fD~IvS  133 (273)
T PF02353_consen   56 EKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--KFDRIVS  133 (273)
T ss_dssp             TTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEE
T ss_pred             HHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--CCCEEEE
Confidence            43  568999999999999999999998 999999999999999999999999998899999999998754  8999998


Q ss_pred             cCCCCC
Q psy15742        262 SPPWGG  267 (342)
Q Consensus       262 nPP~~~  267 (342)
                      =-.+.+
T Consensus       134 i~~~Eh  139 (273)
T PF02353_consen  134 IEMFEH  139 (273)
T ss_dssp             ESEGGG
T ss_pred             Eechhh
Confidence            544443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.50  E-value=7.8e-14  Score=128.45  Aligned_cols=135  Identities=23%  Similarity=0.332  Sum_probs=96.5

Q ss_pred             hcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccccC-CCCCccEEEEcC
Q psy15742        186 RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG-DFFALA-PSLQGDVVFLSP  263 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~-D~~~~~-~~~~~D~Ii~nP  263 (342)
                      .+++|+.|||++||||++.+++...|.+++|+|++..|++-|+.|++.++++ ...+... |+.+.+ ++..+|.|++||
T Consensus       194 ~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl~~~~vdaIatDP  272 (347)
T COG1041         194 RVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPLRDNSVDAIATDP  272 (347)
T ss_pred             ccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCCCCCccceEEecC
Confidence            4568999999999999999999999999999999999999999999999985 5656555 998887 334699999999


Q ss_pred             CCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEecc
Q psy15742        264 PWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTG  329 (342)
Q Consensus       264 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~  329 (342)
                      ||+..+..+ ...+.+++..     .+-.....+.+++.+.++......  ......++.+.....
T Consensus       273 PYGrst~~~-~~~l~~Ly~~-----~le~~~evLk~gG~~vf~~p~~~~--~~~~~~~f~v~~~~~  330 (347)
T COG1041         273 PYGRSTKIK-GEGLDELYEE-----ALESASEVLKPGGRIVFAAPRDPR--HELEELGFKVLGRFT  330 (347)
T ss_pred             CCCcccccc-cccHHHHHHH-----HHHHHHHHhhcCcEEEEecCCcch--hhHhhcCceEEEEEE
Confidence            999876433 2223444443     333444455555656554443222  223335666664443

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.48  E-value=3.4e-13  Score=106.46  Aligned_cols=75  Identities=33%  Similarity=0.462  Sum_probs=67.0

Q ss_pred             CCCeEEeccCCCcHHHHHHHH--hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc-cccCCCCCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF-FALAPSLQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~--~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~-~~~~~~~~~D~Ii~nP  263 (342)
                      |+.+|||+|||+|.+++.+++  .+.+|+|+|+|+.+++.|++++...+..++++++++|+ .......+||+|+++.
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence            477999999999999999999  59999999999999999999997788778999999999 4444455799999976

...

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.48  E-value=1.5e-12  Score=111.98  Aligned_cols=142  Identities=18%  Similarity=0.203  Sum_probs=93.9

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~  268 (342)
                      ++.+|||+|||+|.++..++..+.+|+|+|+|+.+++.+++|++.+++  +++++.+|+.+... .+||+|++||||+..
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~fD~Vi~n~p~~~~   95 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGVR-GKFDVILFNPPYLPL   95 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccccC-CcccEEEECCCCCCC
Confidence            356899999999999999999877999999999999999999998887  68999999987654 489999999999865


Q ss_pred             ccccccccccccCcC-CCCc-----hhhhHhhhccCCCceeec--CCCCCHHHHHHhh-CCCcEEEEecccCCC
Q psy15742        269 EYARSSFSIDNIFPE-QGGG-----RRLFQVARGISPNVGYYL--PRTSDVFEIFHDS-GKKGSFISLTGRQMF  333 (342)
Q Consensus       269 ~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~l--~~~~~~~~l~~~~-~~~~~i~~i~~~~~f  333 (342)
                      .......+..+.... ..++     ..+..+.+.+.+++.+.+  +......++...+ ..++.+..+....+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~  169 (179)
T TIGR00537        96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGLF  169 (179)
T ss_pred             cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeecC
Confidence            322111111011000 0011     123344455666665544  3333244444333 457777766655543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.48  E-value=7.1e-13  Score=119.93  Aligned_cols=76  Identities=29%  Similarity=0.434  Sum_probs=65.2

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC---CCCccEEEEcCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVFLSPP  264 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~---~~~~D~Ii~nPP  264 (342)
                      +.+|||+|||+|.+++.+++.  +.+|+|+|+|+.+++.|++|++.++    ++++++|+.+..+   .++||+|++|||
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPP  162 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAP  162 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCC
Confidence            458999999999999999875  5699999999999999999998876    3789999887543   247999999999


Q ss_pred             CCCCc
Q psy15742        265 WGGPE  269 (342)
Q Consensus       265 ~~~~~  269 (342)
                      |...+
T Consensus       163 y~~~~  167 (251)
T TIGR03704       163 YVPTD  167 (251)
T ss_pred             CCCch
Confidence            98653

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=2e-13  Score=124.31  Aligned_cols=142  Identities=18%  Similarity=0.148  Sum_probs=101.8

Q ss_pred             cCCCCCCHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q psy15742        169 DGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF  247 (342)
Q Consensus       169 ~~~~~~~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~  247 (342)
                      ++..++|+..+++++.++..+|.+|||+|||||.+++.+++. +.+|+|+|+||.+++.|++|++.|+++..++....+.
T Consensus       142 GTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~  221 (300)
T COG2264         142 GTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLL  221 (300)
T ss_pred             CCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccc
Confidence            677888999999999999999999999999999999999998 4569999999999999999999999964344445555


Q ss_pred             cccCCCCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHH--HHHHhh-CCCcEE
Q psy15742        248 FALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVF--EIFHDS-GKKGSF  324 (342)
Q Consensus       248 ~~~~~~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~l~~~~-~~~~~i  324 (342)
                      ...+...+||+|++|-= ...        +..         ..-+....+.+++.+.++.-..-.  .+.... ..++.+
T Consensus       222 ~~~~~~~~~DvIVANIL-A~v--------l~~---------La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v  283 (300)
T COG2264         222 LEVPENGPFDVIVANIL-AEV--------LVE---------LAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEV  283 (300)
T ss_pred             hhhcccCcccEEEehhh-HHH--------HHH---------HHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeE
Confidence            55555579999999742 110        001         122345556666666665543322  222222 457776


Q ss_pred             EEec
Q psy15742        325 ISLT  328 (342)
Q Consensus       325 ~~i~  328 (342)
                      ..+.
T Consensus       284 ~~~~  287 (300)
T COG2264         284 VEVL  287 (300)
T ss_pred             eEEE
Confidence            6543

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.47  E-value=3e-13  Score=117.14  Aligned_cols=80  Identities=13%  Similarity=0.169  Sum_probs=69.9

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----C-CCccEEEEc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----S-LQGDVVFLS  262 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----~-~~~D~Ii~n  262 (342)
                      ++.+|||+|||+|.++++++.+| .+|+++|.++.+++.+++|++.+++.++++++++|+.++..    . ..||+|+.|
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D  128 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD  128 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence            37799999999999999999985 58999999999999999999999987689999999977532    1 248999999


Q ss_pred             CCCCCC
Q psy15742        263 PPWGGP  268 (342)
Q Consensus       263 PP~~~~  268 (342)
                      |||...
T Consensus       129 PPy~~~  134 (189)
T TIGR00095       129 PPFFNG  134 (189)
T ss_pred             cCCCCC
Confidence            999753

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK14967 putative methyltransferase; Provisional

Probab=99.46  E-value=5.2e-13  Score=118.86  Aligned_cols=81  Identities=27%  Similarity=0.321  Sum_probs=71.5

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      +.++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.+++.|++|++.+++  +++++++|+.+..+..+||+|++||||
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~fD~Vi~npPy  111 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRPFDVVVSNPPY  111 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCCeeEEEECCCC
Confidence            3567899999999999999999875 4999999999999999999998887  689999999886666789999999999


Q ss_pred             CCCc
Q psy15742        266 GGPE  269 (342)
Q Consensus       266 ~~~~  269 (342)
                      ....
T Consensus       112 ~~~~  115 (223)
T PRK14967        112 VPAP  115 (223)
T ss_pred             CCCC
Confidence            8653

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.44  E-value=5.6e-13  Score=126.48  Aligned_cols=80  Identities=16%  Similarity=0.265  Sum_probs=70.1

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS--HKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~--~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      +.+|||+|||+|.+++.+++.  ..+|+++|.|+.+++.|++|++.++..  .+++++.+|+.+..+..+||+|++||||
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf  308 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF  308 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence            458999999999999999987  579999999999999999999988753  3789999999876555689999999999


Q ss_pred             CCCc
Q psy15742        266 GGPE  269 (342)
Q Consensus       266 ~~~~  269 (342)
                      +...
T Consensus       309 h~~~  312 (378)
T PRK15001        309 HQQH  312 (378)
T ss_pred             ccCc
Confidence            8653

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.44  E-value=3.8e-13  Score=115.68  Aligned_cols=81  Identities=23%  Similarity=0.463  Sum_probs=65.5

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEEc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLS  262 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~n  262 (342)
                      +|.+|||++||||.++++++.+ +.+|+.||.|+.++...++|++..++.++++++++|+....     ...+||+|++|
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD  121 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD  121 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence            3789999999999999999887 57999999999999999999999998777999999987654     35689999999


Q ss_pred             CCCCCCc
Q psy15742        263 PPWGGPE  269 (342)
Q Consensus       263 PP~~~~~  269 (342)
                      |||....
T Consensus       122 PPY~~~~  128 (183)
T PF03602_consen  122 PPYAKGL  128 (183)
T ss_dssp             -STTSCH
T ss_pred             CCcccch
Confidence            9998764

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PHA03411 putative methyltransferase; Provisional

Probab=99.44  E-value=6.1e-13  Score=119.78  Aligned_cols=75  Identities=21%  Similarity=0.399  Sum_probs=65.7

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      +.+|||+|||+|.+++.++..  +.+|+|+|+|+.+++.|++|+      .+++++++|+.++....+||+|++||||+.
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~  138 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESNEKFDVVISNPPFGK  138 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcccCCCcEEEEcCCccc
Confidence            568999999999999988775  579999999999999999874      268899999998876668999999999998


Q ss_pred             Ccc
Q psy15742        268 PEY  270 (342)
Q Consensus       268 ~~~  270 (342)
                      .+.
T Consensus       139 l~~  141 (279)
T PHA03411        139 INT  141 (279)
T ss_pred             cCc
Confidence            643

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.43  E-value=2.4e-12  Score=109.61  Aligned_cols=78  Identities=22%  Similarity=0.264  Sum_probs=68.2

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nPP~~  266 (342)
                      .++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.+++|+..  . ++++++++|+.++.. ...||.|++||||+
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~-~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~   88 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--A-DNLTVIHGDALKFDLPKLQPYKVVGNLPYN   88 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--C-CCEEEEECchhcCCccccCCCEEEECCCcc
Confidence            3577999999999999999999888999999999999999999854  2 479999999998863 33699999999998


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus        89 ~~   90 (169)
T smart00650       89 IS   90 (169)
T ss_pred             cH
Confidence            53

>KOG2904|consensus

Probab=99.43  E-value=1.3e-12  Score=115.40  Aligned_cols=118  Identities=19%  Similarity=0.215  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHhcC-----CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc-
Q psy15742        176 PEKVAQHIASRCK-----ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF-  247 (342)
Q Consensus       176 ~e~~~~~i~~~~~-----~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~-  247 (342)
                      +|+.++++...++     .+..++|+|||+|.+++.++..  -..|+++|.|+.++..|.+|++++++.+.+.+++-++ 
T Consensus       130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me  209 (328)
T KOG2904|consen  130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIME  209 (328)
T ss_pred             HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccc
Confidence            4677777666543     4568999999999999999886  5789999999999999999999999998898885543 


Q ss_pred             ---cccC--CCCCccEEEEcCCCCCCcccc-ccccccccCcC--CCCchhhhHh
Q psy15742        248 ---FALA--PSLQGDVVFLSPPWGGPEYAR-SSFSIDNIFPE--QGGGRRLFQV  293 (342)
Q Consensus       248 ---~~~~--~~~~~D~Ii~nPP~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~  293 (342)
                         .+..  ..+++|++++||||...+... ....+..+.|.  ++||....+.
T Consensus       210 ~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~  263 (328)
T KOG2904|consen  210 SDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDN  263 (328)
T ss_pred             cccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHH
Confidence               3322  346899999999999875533 22333344433  2445444433

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.42  E-value=5.8e-13  Score=127.09  Aligned_cols=124  Identities=21%  Similarity=0.216  Sum_probs=94.8

Q ss_pred             CCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEcCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPPWG  266 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nPP~~  266 (342)
                      +.+|||++||+|.+++.+|...  .+|+++|+|+.+++.+++|++.|+++ +++++++|+..++. ...||+|++||| +
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~-G  135 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF-G  135 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC-C
Confidence            4689999999999999998863  48999999999999999999999984 67899999987664 467999999998 2


Q ss_pred             CCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEecccCCCCCCCc
Q psy15742        267 GPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQD  338 (342)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~~~~fp~t~h  338 (342)
                      ...                  ..+-.......++.+++++    ..++..+.+. +....+.+.++||+...
T Consensus       136 s~~------------------~~l~~al~~~~~~gilyvS----AtD~~~L~g~-y~~~~~~~yd~fP~~~~  184 (382)
T PRK04338        136 SPA------------------PFLDSAIRSVKRGGLLCVT----ATDTAPLCGA-YPKSCLRKYGAVPLKTE  184 (382)
T ss_pred             CcH------------------HHHHHHHHHhcCCCEEEEE----ecCchhhcCC-ChHHHHHHhcCcccCCc
Confidence            211                  0112223444555566553    4455566554 88999999999998653

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.41  E-value=2e-12  Score=116.89  Aligned_cols=79  Identities=28%  Similarity=0.456  Sum_probs=71.2

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      +.+|||+|||+|.++..++..  ..+++|+|+|+.+++.|+.|+..+++. +++++++|+.+..+..+||+|++||||..
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~npPy~~  166 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGGKFDLIVSNPPYIP  166 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCCceeEEEECCCCCc
Confidence            458999999999999999986  679999999999999999999999984 79999999988666678999999999987


Q ss_pred             Cc
Q psy15742        268 PE  269 (342)
Q Consensus       268 ~~  269 (342)
                      .+
T Consensus       167 ~~  168 (251)
T TIGR03534       167 EA  168 (251)
T ss_pred             hh
Confidence            54

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=1.5e-12  Score=117.88  Aligned_cols=77  Identities=19%  Similarity=0.344  Sum_probs=68.6

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      +.+|+|+|||.|.+++.+|+.  ..+++-+|+|..+++.|+.|+..|+++ +..++..|..+.... +||.|++||||+.
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~v~~-kfd~IisNPPfh~  236 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEPVEG-KFDLIISNPPFHA  236 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEecccccccc-cccEEEeCCCccC
Confidence            449999999999999999998  469999999999999999999999995 337888888877665 9999999999996


Q ss_pred             C
Q psy15742        268 P  268 (342)
Q Consensus       268 ~  268 (342)
                      .
T Consensus       237 G  237 (300)
T COG2813         237 G  237 (300)
T ss_pred             C
Confidence            5

>KOG3420|consensus

Probab=99.40  E-value=6.2e-13  Score=106.55  Aligned_cols=79  Identities=30%  Similarity=0.531  Sum_probs=70.1

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      .|+.++|+|||+|.+++.++-. ...|+|+|+++++++.+++|+....+  ++.+.++|+.+.. ..+.||.+++||||+
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNppFG  125 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPPFG  125 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCCCC
Confidence            4789999999999999777765 67899999999999999999999888  6799999999876 446899999999999


Q ss_pred             CCc
Q psy15742        267 GPE  269 (342)
Q Consensus       267 ~~~  269 (342)
                      ...
T Consensus       126 Tk~  128 (185)
T KOG3420|consen  126 TKK  128 (185)
T ss_pred             ccc
Confidence            763

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.39  E-value=1.1e-12  Score=120.57  Aligned_cols=93  Identities=27%  Similarity=0.264  Sum_probs=74.1

Q ss_pred             cCCCCCCHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q psy15742        169 DGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF  247 (342)
Q Consensus       169 ~~~~~~~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~  247 (342)
                      +...++|+..+++.+.....+|.+|||+|||||.+++.+++. +.+|+|+|+|+.+++.|++|++.||+.+++.+.  ..
T Consensus       141 GTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~  218 (295)
T PF06325_consen  141 GTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LS  218 (295)
T ss_dssp             -SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CT
T ss_pred             cCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Ee
Confidence            455666788999999999999999999999999999999998 458999999999999999999999998766553  22


Q ss_pred             cccCCCCCccEEEEcCC
Q psy15742        248 FALAPSLQGDVVFLSPP  264 (342)
Q Consensus       248 ~~~~~~~~~D~Ii~nPP  264 (342)
                      .+. ...+||+|++|--
T Consensus       219 ~~~-~~~~~dlvvANI~  234 (295)
T PF06325_consen  219 EDL-VEGKFDLVVANIL  234 (295)
T ss_dssp             SCT-CCS-EEEEEEES-
T ss_pred             ccc-ccccCCEEEECCC
Confidence            222 2378999999744

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK14968 putative methyltransferase; Provisional

Probab=99.39  E-value=1.3e-11  Score=106.45  Aligned_cols=145  Identities=21%  Similarity=0.240  Sum_probs=96.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHK-IQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~-i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      .++.+|||+|||+|.++..++..+.+++|+|+|+.+++.+++|+..+++.++ +.++++|+.+......||+|++||||.
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~  101 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL  101 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence            4577999999999999999999899999999999999999999999887433 899999988766555899999999997


Q ss_pred             CCcccccccc-ccccCcC-CCCc----hhhhHhhhccCCCceee--cCCCCCHHHHHHhh-CCCcEEEEecccCC
Q psy15742        267 GPEYARSSFS-IDNIFPE-QGGG----RRLFQVARGISPNVGYY--LPRTSDVFEIFHDS-GKKGSFISLTGRQM  332 (342)
Q Consensus       267 ~~~~~~~~~~-~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~--l~~~~~~~~l~~~~-~~~~~i~~i~~~~~  332 (342)
                      .........+ ....... ..+.    ..+..+.+.+.+++.++  .+.......+...+ ..++++..+....+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~  176 (188)
T PRK14968        102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKF  176 (188)
T ss_pred             CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeeccc
Confidence            6431111000 0000000 0000    02344445555555433  24444555555554 34777776665544

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.39  E-value=5.1e-12  Score=108.69  Aligned_cols=73  Identities=19%  Similarity=0.201  Sum_probs=65.7

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      +.+|||+|||+|.+++.++..  +.+|+|+|.|+.+++.+++|++.++++ +++++++|+.++....+||+|+++.
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~  117 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRA  117 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehh
Confidence            779999999999999998875  468999999999999999999999984 6999999999876567899999985

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.38  E-value=1.4e-11  Score=113.60  Aligned_cols=81  Identities=25%  Similarity=0.296  Sum_probs=72.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      .++++|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++..++..++++++++|+.+... ..||.|++|+||..
T Consensus        35 ~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d~VvaNlPY~I  113 (294)
T PTZ00338         35 KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFDVCVANVPYQI  113 (294)
T ss_pred             CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccCEEEecCCccc
Confidence            45789999999999999999998889999999999999999999887755689999999988643 36899999999987


Q ss_pred             Cc
Q psy15742        268 PE  269 (342)
Q Consensus       268 ~~  269 (342)
                      .+
T Consensus       114 st  115 (294)
T PTZ00338        114 SS  115 (294)
T ss_pred             Cc
Confidence            74

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.38  E-value=1.1e-12  Score=114.83  Aligned_cols=100  Identities=26%  Similarity=0.223  Sum_probs=79.9

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC-CCccEEEEcCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-LQGDVVFLSPPWGG  267 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~-~~~D~Ii~nPP~~~  267 (342)
                      +|.+|||+|||-|.++..+|+.|.+|+|+|+++.+++.|+..+...|+  ++++.+..+.++... ++||+|+|.---. 
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVlE-  135 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVLE-  135 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHHH-
Confidence            488999999999999999999999999999999999999999999998  588889888888644 7999999943222 


Q ss_pred             CccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        268 PEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                                  -.|+  ....+..|...+.|++..++
T Consensus       136 ------------Hv~d--p~~~~~~c~~lvkP~G~lf~  159 (243)
T COG2227         136 ------------HVPD--PESFLRACAKLVKPGGILFL  159 (243)
T ss_pred             ------------ccCC--HHHHHHHHHHHcCCCcEEEE
Confidence                        2222  22355556666666666665

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.37  E-value=1.4e-11  Score=116.07  Aligned_cols=75  Identities=19%  Similarity=0.278  Sum_probs=66.1

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      ..+|||+|||+|.+++.+++.  ..+|+++|+|+.+++.|+.|++.+++  ..+++.+|+.... .++||+|++||||+.
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~~-~~~fDlIvsNPPFH~  273 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSDI-KGRFDMIISNPPFHD  273 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEccccccc-CCCccEEEECCCccC
Confidence            458999999999999999987  46899999999999999999999998  4578888987654 468999999999985

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.36  E-value=6.4e-12  Score=106.74  Aligned_cols=78  Identities=21%  Similarity=0.398  Sum_probs=70.3

Q ss_pred             CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCC--CccEEEEcCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSL--QGDVVFLSPP  264 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~--~~D~Ii~nPP  264 (342)
                      |.++||+++|||.++++++.+ +.+++.||.|..++...++|++..++..+.+++..|+..++  ...  .||+|++|||
T Consensus        44 g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP  123 (187)
T COG0742          44 GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP  123 (187)
T ss_pred             CCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC
Confidence            789999999999999999988 78999999999999999999999998789999999999664  222  4999999999


Q ss_pred             CCC
Q psy15742        265 WGG  267 (342)
Q Consensus       265 ~~~  267 (342)
                      |+.
T Consensus       124 y~~  126 (187)
T COG0742         124 YAK  126 (187)
T ss_pred             Ccc
Confidence            984

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.36  E-value=1.2e-11  Score=114.92  Aligned_cols=115  Identities=21%  Similarity=0.193  Sum_probs=81.8

Q ss_pred             HHHHHHhhcccccccCCCCCC-------H--HHHHHHHHHh--------cC--CCCeEEeccCCCcHHHHHHHHh--CCE
Q psy15742        155 QHIASRCKASDVVIDGWYSVT-------P--EKVAQHIASR--------CK--ASDVVIDGFCGCGGNTIQFAAV--CQK  213 (342)
Q Consensus       155 ~~i~~~~~~~~~~~~~~~~~~-------~--e~~~~~i~~~--------~~--~~~~vLDlgcGtG~~~~~~a~~--~~~  213 (342)
                      ..+...+...+|++..|.-+.       |  ..-+.++...        ++  .+.++||+|||+|.+...++..  +.+
T Consensus        61 ~~LnkalL~~~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~  140 (321)
T PRK11727         61 KALNKALLAHFYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWR  140 (321)
T ss_pred             HHHHHHHHHHhcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCE
Confidence            345555555667777775432       1  2222333222        22  4579999999999888777664  789


Q ss_pred             EEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEE-ccccccC-----CCCCccEEEEcCCCCCCc
Q psy15742        214 VISIDIDPAKLRLAQHNASVY-GVSHKIQFIQ-GDFFALA-----PSLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       214 v~gvD~s~~~l~~a~~n~~~~-gl~~~i~~~~-~D~~~~~-----~~~~~D~Ii~nPP~~~~~  269 (342)
                      ++|+|+|+.+++.|+.|++.+ ++.++++++. .|..++.     +...||+|+|||||....
T Consensus       141 ~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~  203 (321)
T PRK11727        141 FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASA  203 (321)
T ss_pred             EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcc
Confidence            999999999999999999999 8988888864 3332221     345899999999999754

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.35  E-value=5.3e-12  Score=105.52  Aligned_cols=79  Identities=28%  Similarity=0.405  Sum_probs=68.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHH-h--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAA-V--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~-~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii~nP  263 (342)
                      ++.+|||+|||+|.++..++. .  +.+++|+|+|+.+++.|+.+++..+++ +++|+++|+.++...  ..||+|++++
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~   81 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNG   81 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcC
Confidence            477999999999999999994 3  689999999999999999999999996 899999999996522  6899999998


Q ss_pred             CCCCC
Q psy15742        264 PWGGP  268 (342)
Q Consensus       264 P~~~~  268 (342)
                      +++..
T Consensus        82 ~l~~~   86 (152)
T PF13847_consen   82 VLHHF   86 (152)
T ss_dssp             TGGGT
T ss_pred             chhhc
Confidence            87443

...

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.35  E-value=8.9e-12  Score=108.64  Aligned_cols=133  Identities=15%  Similarity=0.073  Sum_probs=89.3

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCCc
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~~  269 (342)
                      +.+|||+|||+|.+++.+|+.+.+|+|+|+|+.+++.++++++.+++  ++++..+|+.......+||+|+++.+++..+
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~~  108 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNEDYDFIFSTVVFMFLQ  108 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCCCCEEEEecccccCC
Confidence            56999999999999999999999999999999999999999988887  4788888886554445799999999987553


Q ss_pred             ccc---ccccccccCcCCCCch-hhhHhhhccC-CCceeecCCCCCHHHHHHhhCCCcEEEEec
Q psy15742        270 YAR---SSFSIDNIFPEQGGGR-RLFQVARGIS-PNVGYYLPRTSDVFEIFHDSGKKGSFISLT  328 (342)
Q Consensus       270 ~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~  328 (342)
                      ...   ....+.+++++  ||. .+......-. +.. ...+......++...+. ++++....
T Consensus       109 ~~~~~~~l~~~~~~Lkp--gG~lli~~~~~~~~~~~~-~~~~~~~~~~el~~~f~-~~~~~~~~  168 (195)
T TIGR00477       109 AGRVPEIIANMQAHTRP--GGYNLIVAAMDTADYPCH-MPFSFTFKEDELRQYYA-DWELLKYN  168 (195)
T ss_pred             HHHHHHHHHHHHHHhCC--CcEEEEEEecccCCCCCC-CCcCccCCHHHHHHHhC-CCeEEEee
Confidence            211   22233444544  443 3332221110 100 01122345666766654 46666554

Part of a tellurite-reducing operon tehA and tehB

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.35  E-value=1.6e-12  Score=133.64  Aligned_cols=80  Identities=30%  Similarity=0.451  Sum_probs=70.0

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC--------------------------------------------CEEEEEeCCHHHH
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC--------------------------------------------QKVISIDIDPAKL  224 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~--------------------------------------------~~v~gvD~s~~~l  224 (342)
                      ++..++|++||+|++.+++|..+                                            .+++|+|+|+.++
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            46799999999999999998631                                            2689999999999


Q ss_pred             HHHHHHHHHcCCCCcEEEEEccccccCCC---CCccEEEEcCCCCCC
Q psy15742        225 RLAQHNASVYGVSHKIQFIQGDFFALAPS---LQGDVVFLSPPWGGP  268 (342)
Q Consensus       225 ~~a~~n~~~~gl~~~i~~~~~D~~~~~~~---~~~D~Ii~nPP~~~~  268 (342)
                      +.|+.|+..+|+.+.+++.++|+.+....   +++|+|++||||+..
T Consensus       270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r  316 (702)
T PRK11783        270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGER  316 (702)
T ss_pred             HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCc
Confidence            99999999999987899999999887532   469999999999965

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.35  E-value=7.4e-12  Score=114.83  Aligned_cols=80  Identities=29%  Similarity=0.476  Sum_probs=69.4

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      ++.+|||+|||+|.+++.++..  ..+++|+|+|+.+++.|++|+. ++...+++++++|+.+..+..+||+|++||||.
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~  186 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI  186 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence            4679999999999999999987  4899999999999999999998 333458999999997765556899999999998


Q ss_pred             CCc
Q psy15742        267 GPE  269 (342)
Q Consensus       267 ~~~  269 (342)
                      ..+
T Consensus       187 ~~~  189 (275)
T PRK09328        187 PEA  189 (275)
T ss_pred             Ccc
Confidence            754

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.35  E-value=8.8e-12  Score=108.85  Aligned_cols=79  Identities=16%  Similarity=0.113  Sum_probs=69.4

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~  268 (342)
                      ++.+|||+|||+|.++..+|+.+.+|+|+|+|+.+++.|++++...++. ++++..+|+.+.....+||+|+++-.++..
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~  108 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFDGEYDFILSTVVLMFL  108 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcCCCcCEEEEecchhhC
Confidence            3679999999999999999999999999999999999999999988884 689999999876545679999998776543

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.35  E-value=1.6e-11  Score=106.00  Aligned_cols=77  Identities=21%  Similarity=0.181  Sum_probs=68.2

Q ss_pred             HhcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742        185 SRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  262 (342)
Q Consensus       185 ~~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n  262 (342)
                      ..++++.+|||+|||+|..++.+++.  +.+|+|+|.|+.+++.|++|++.++++ +++++++|+.+.....+||+|+++
T Consensus        41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~  119 (187)
T PRK00107         41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSR  119 (187)
T ss_pred             hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEc
Confidence            34556889999999999999999874  689999999999999999999999985 599999999887665689999996

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.35  E-value=8.4e-12  Score=113.87  Aligned_cols=85  Identities=19%  Similarity=0.251  Sum_probs=73.0

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  262 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n  262 (342)
                      .++|.+|||+|||+|+.+..++..   ...|+++|+++.+++.+++|++.+|+. +++++++|+..+. ....||.|++|
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Vl~D  147 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDAILLD  147 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCEEEEc
Confidence            456889999999999999999875   358999999999999999999999984 7999999987754 23469999999


Q ss_pred             CCCCCCcccc
Q psy15742        263 PPWGGPEYAR  272 (342)
Q Consensus       263 PP~~~~~~~~  272 (342)
                      ||+.+.....
T Consensus       148 ~Pcsg~G~~~  157 (264)
T TIGR00446       148 APCSGEGVIR  157 (264)
T ss_pred             CCCCCCcccc
Confidence            9999875444

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.32  E-value=1.5e-11  Score=120.40  Aligned_cols=85  Identities=26%  Similarity=0.402  Sum_probs=74.7

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      ..+|.+|||+|||+|+.+..+++.   +.+|+|+|+|+.+++.+++|++..|+. +++++++|+.++.+...||+|++||
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD~Vl~D~  326 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPDAILLDA  326 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCCEEEEcC
Confidence            457889999999999999988874   468999999999999999999999984 7999999999877667899999999


Q ss_pred             CCCCCcccc
Q psy15742        264 PWGGPEYAR  272 (342)
Q Consensus       264 P~~~~~~~~  272 (342)
                      |+.+.....
T Consensus       327 Pcsg~g~~~  335 (445)
T PRK14904        327 PCTGTGVLG  335 (445)
T ss_pred             CCCCcchhh
Confidence            998875443

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.31  E-value=1e-11  Score=107.88  Aligned_cols=84  Identities=26%  Similarity=0.425  Sum_probs=64.5

Q ss_pred             hcCCCCeEEeccCCCcHHHHHHHH--hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        186 RCKASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~~~a~--~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      .+++|..|+|++||.|.+++.+|+  .+..|+++|++|.+++++++|++.|++.+++..+++|+.++++...+|.|++|.
T Consensus        98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l  177 (200)
T PF02475_consen   98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL  177 (200)
T ss_dssp             C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred             cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence            346789999999999999999999  588999999999999999999999999888999999999998778999999999


Q ss_pred             CCCCCc
Q psy15742        264 PWGGPE  269 (342)
Q Consensus       264 P~~~~~  269 (342)
                      |-....
T Consensus       178 p~~~~~  183 (200)
T PF02475_consen  178 PESSLE  183 (200)
T ss_dssp             TSSGGG
T ss_pred             hHHHHH
Confidence            955443

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PLN02672 methionine S-methyltransferase

Probab=99.31  E-value=2.8e-11  Score=127.24  Aligned_cols=81  Identities=21%  Similarity=0.286  Sum_probs=70.0

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCC---------------CcEEEEEccccccCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS---------------HKIQFIQGDFFALAP  252 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~---------------~~i~~~~~D~~~~~~  252 (342)
                      +.+|+|+|||+|.+++.+++.  ..+|+|+|+|+.+++.|++|++.|+++               ++++|+++|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            468999999999999999986  369999999999999999999987642               479999999988764


Q ss_pred             C--CCccEEEEcCCCCCCcc
Q psy15742        253 S--LQGDVVFLSPPWGGPEY  270 (342)
Q Consensus       253 ~--~~~D~Ii~nPP~~~~~~  270 (342)
                      .  .+||+||+||||.....
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e  218 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPN  218 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcc
Confidence            3  36999999999997643

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.30  E-value=4.2e-11  Score=109.78  Aligned_cols=77  Identities=21%  Similarity=0.210  Sum_probs=66.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC-CccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-QGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~-~~D~Ii~nPP~~  266 (342)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++..    ++++++++|+.++.... .+|.|++||||.
T Consensus        41 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~  116 (272)
T PRK00274         41 QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQPLKVVANLPYN  116 (272)
T ss_pred             CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCcceEEEeCCcc
Confidence            4578999999999999999999888999999999999999988742    47999999999875332 259999999997


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       117 is  118 (272)
T PRK00274        117 IT  118 (272)
T ss_pred             ch
Confidence            75

>KOG3926|consensus

Probab=99.30  E-value=4.1e-12  Score=111.30  Aligned_cols=61  Identities=25%  Similarity=0.234  Sum_probs=56.0

Q ss_pred             hhhHhHHHHHHHHHhccccCccchhHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy15742          4 KKVLEDVAYQDILITYKLSTLSGCAQKVLFNILEDVAYQDILITYKLSTLSGCAQKVLFNI   64 (342)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~~   64 (342)
                      +..--|||+|+|++++|+|||||.|||+||||||+|+..|+.++++++++|+|++++-..+
T Consensus        94 rrFnyickllqliak~ql~sLsg~Aqknll~ile~v~~kv~ddqqn~~~irdL~q~l~~~l  154 (332)
T KOG3926|consen   94 RRFNYICKLLQLIAKSQLTSLSGSAQKNLLNILEKVVSKVLDDQQNPRLIRDLLQKLEHIL  154 (332)
T ss_pred             HHHHHHHHHHHHHHHccCCCCchHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence            4455699999999999999999999999999999999999999999999999999994433

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.30  E-value=5e-12  Score=112.22  Aligned_cols=79  Identities=29%  Similarity=0.466  Sum_probs=70.0

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      +|.+|||+|||||-+++.+++..  .+|+|+|+|+.|++.|++.+...|..+ ++|+++|+.+++ ++.+||+|.+.  |
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~--f  127 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTIS--F  127 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEee--e
Confidence            58999999999999999999984  899999999999999999999888754 999999999998 77899999993  4


Q ss_pred             CCCcc
Q psy15742        266 GGPEY  270 (342)
Q Consensus       266 ~~~~~  270 (342)
                      +-.+.
T Consensus       128 glrnv  132 (238)
T COG2226         128 GLRNV  132 (238)
T ss_pred             hhhcC
Confidence            44443

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.29  E-value=4e-11  Score=110.80  Aligned_cols=92  Identities=25%  Similarity=0.207  Sum_probs=75.9

Q ss_pred             CCCCHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q psy15742        172 YSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  250 (342)
Q Consensus       172 ~~~~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~  250 (342)
                      .+++...+++.+.....++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.+++.|++|+..+++..++.+..+|....
T Consensus       142 ~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~  221 (288)
T TIGR00406       142 THPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP  221 (288)
T ss_pred             CCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc
Confidence            4455666677777777788999999999999999998874 589999999999999999999999876788887774433


Q ss_pred             CCCCCccEEEEcCC
Q psy15742        251 APSLQGDVVFLSPP  264 (342)
Q Consensus       251 ~~~~~~D~Ii~nPP  264 (342)
                       ...+||+|++|..
T Consensus       222 -~~~~fDlVvan~~  234 (288)
T TIGR00406       222 -IEGKADVIVANIL  234 (288)
T ss_pred             -cCCCceEEEEecC
Confidence             3458999999865

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.29  E-value=7.6e-11  Score=107.25  Aligned_cols=77  Identities=21%  Similarity=0.270  Sum_probs=67.6

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++..  . ++++++++|+.+... ..||.|++||||..
T Consensus        28 ~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~-~~~d~Vv~NlPy~i  103 (258)
T PRK14896         28 TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDL-PEFNKVVSNLPYQI  103 (258)
T ss_pred             CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCc-hhceEEEEcCCccc
Confidence            4578999999999999999999988999999999999999998854  2 489999999998653 25899999999986


Q ss_pred             C
Q psy15742        268 P  268 (342)
Q Consensus       268 ~  268 (342)
                      .
T Consensus       104 ~  104 (258)
T PRK14896        104 S  104 (258)
T ss_pred             C
Confidence            4

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.28  E-value=2.9e-11  Score=117.63  Aligned_cols=86  Identities=23%  Similarity=0.283  Sum_probs=74.7

Q ss_pred             hcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEE
Q psy15742        186 RCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVF  260 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii  260 (342)
                      ...+|.+|||+|||+|+.+.+++..   +.+|+++|+|+.+++.+++|+++.|+. +++++++|+.++.  ..++||.|+
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl  312 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRIL  312 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEE
Confidence            3457889999999999999999875   579999999999999999999999984 6999999998764  245799999


Q ss_pred             EcCCCCCCcccc
Q psy15742        261 LSPPWGGPEYAR  272 (342)
Q Consensus       261 ~nPP~~~~~~~~  272 (342)
                      +|||+.+.....
T Consensus       313 ~DaPCsg~G~~~  324 (431)
T PRK14903        313 VDAPCTSLGTAR  324 (431)
T ss_pred             ECCCCCCCcccc
Confidence            999998876544

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.27  E-value=5.7e-11  Score=104.76  Aligned_cols=143  Identities=17%  Similarity=0.158  Sum_probs=92.2

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcC-----------CCCcEEEEEccccccCC--CC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYG-----------VSHKIQFIQGDFFALAP--SL  254 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~g-----------l~~~i~~~~~D~~~~~~--~~  254 (342)
                      +++.+|||+|||.|..++.+|++|..|+|+|+|+.+++.+........           -..+++++++|++++..  ..
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~  112 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG  112 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence            357799999999999999999999999999999999998644221100           01368999999998763  35


Q ss_pred             CccEEEEcCCCCCCcccc---ccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEecccC
Q psy15742        255 QGDVVFLSPPWGGPEYAR---SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQ  331 (342)
Q Consensus       255 ~~D~Ii~nPP~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~~~  331 (342)
                      .||.|+-.--+.......   ....+.+++++  ||..++.+........ ---|...+..++..++.+.+.+..+....
T Consensus       113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp--gG~~ll~~~~~~~~~~-~gpp~~~~~~eL~~~f~~~~~i~~~~~~~  189 (213)
T TIGR03840       113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPP--GARQLLITLDYDQSEM-AGPPFSVSPAEVEALYGGHYEIELLESRD  189 (213)
T ss_pred             CcCEEEechhhccCCHHHHHHHHHHHHHHcCC--CCeEEEEEEEcCCCCC-CCcCCCCCHHHHHHHhcCCceEEEEeecc
Confidence            688887654443332111   22344555655  5543333222111110 00123466778888887788888887777


Q ss_pred             CC
Q psy15742        332 MF  333 (342)
Q Consensus       332 ~f  333 (342)
                      .+
T Consensus       190 ~~  191 (213)
T TIGR03840       190 VL  191 (213)
T ss_pred             cc
Confidence            66

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.27  E-value=3.4e-11  Score=106.61  Aligned_cols=79  Identities=19%  Similarity=0.142  Sum_probs=68.4

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLS  262 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~n  262 (342)
                      ++++.+|||+|||+|.++..+++..   .+|+|+|+++.+++.|++|++.+|+ ++++++++|+.+..+ ..+||+|+++
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~fD~Ii~~  153 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPYDRIYVT  153 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCCCEEEEc
Confidence            3468899999999999999999873   3599999999999999999999998 589999999987543 3589999999


Q ss_pred             CCCC
Q psy15742        263 PPWG  266 (342)
Q Consensus       263 PP~~  266 (342)
                      ++..
T Consensus       154 ~~~~  157 (215)
T TIGR00080       154 AAGP  157 (215)
T ss_pred             CCcc
Confidence            8754

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.27  E-value=4.3e-11  Score=114.61  Aligned_cols=153  Identities=16%  Similarity=0.127  Sum_probs=102.4

Q ss_pred             ccccCCCCCCChhhhcCcchhHHhhccchhhhccCcccccCCccccccCHHHHHHHHHHHhhcccccccCCCCCCHHHHH
Q psy15742        101 QEDLGDLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVA  180 (342)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~  180 (342)
                      .+..++..++..+|+..++++..|.++...++.          ++|... +.+.......+                   
T Consensus       107 n~~~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~----------g~~~~~-~~L~~Aq~~k~-------------------  156 (383)
T PRK11705        107 QSKKRAWIVGKEHYDLGNDLFEAMLDPRMQYSC----------GYWKDA-DTLEEAQEAKL-------------------  156 (383)
T ss_pred             CChhhHHHhhhhhcCCcHHHHHHhcCCCCcccc----------cccCCC-CCHHHHHHHHH-------------------
Confidence            445567778888999999999988887554443          222111 11111111111                   


Q ss_pred             HHHHHh--cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCcc
Q psy15742        181 QHIASR--CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD  257 (342)
Q Consensus       181 ~~i~~~--~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D  257 (342)
                      +.+.+.  ++++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++++.  ++  ++++..+|+.+.  .++||
T Consensus       157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l--~~~fD  230 (383)
T PRK11705        157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL--NGQFD  230 (383)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc--CCCCC
Confidence            222222  357889999999999999999986 7899999999999999999984  44  588899998776  45899


Q ss_pred             EEEEcCCCCCCccc---cccccccccCcCCCCchhhh
Q psy15742        258 VVFLSPPWGGPEYA---RSSFSIDNIFPEQGGGRRLF  291 (342)
Q Consensus       258 ~Ii~nPP~~~~~~~---~~~~~~~~~~~~~~~~~~~~  291 (342)
                      .|++...+......   .....+.+++++  ||..++
T Consensus       231 ~Ivs~~~~ehvg~~~~~~~l~~i~r~Lkp--GG~lvl  265 (383)
T PRK11705        231 RIVSVGMFEHVGPKNYRTYFEVVRRCLKP--DGLFLL  265 (383)
T ss_pred             EEEEeCchhhCChHHHHHHHHHHHHHcCC--CcEEEE
Confidence            99998776654221   122334455655  454333

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.26  E-value=3.2e-11  Score=109.04  Aligned_cols=84  Identities=21%  Similarity=0.271  Sum_probs=71.3

Q ss_pred             HHhcCCCCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEE
Q psy15742        184 ASRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVV  259 (342)
Q Consensus       184 ~~~~~~~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~I  259 (342)
                      ...++++.+|||+|||+|..+..+++.    +.+++|+|+|+.|++.|++++..++...+++++++|+.+.+.. .+|+|
T Consensus        51 ~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~v  129 (247)
T PRK15451         51 ERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMV  129 (247)
T ss_pred             HHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEE
Confidence            344567889999999999999988872    5799999999999999999999888867899999999887543 59999


Q ss_pred             EEcCCCCCC
Q psy15742        260 FLSPPWGGP  268 (342)
Q Consensus       260 i~nPP~~~~  268 (342)
                      +++...+..
T Consensus       130 v~~~~l~~l  138 (247)
T PRK15451        130 VLNFTLQFL  138 (247)
T ss_pred             ehhhHHHhC
Confidence            998776544

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.25  E-value=4.1e-11  Score=108.88  Aligned_cols=81  Identities=23%  Similarity=0.269  Sum_probs=71.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...|+.++++++++|+.++.  ...+||+|+++..+
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl  122 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL  122 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence            3467999999999999999999999999999999999999999999988778999999998764  35689999998776


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      +..
T Consensus       123 ~~~  125 (255)
T PRK11036        123 EWV  125 (255)
T ss_pred             Hhh
Confidence            543

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.25  E-value=2.2e-11  Score=113.60  Aligned_cols=147  Identities=15%  Similarity=0.047  Sum_probs=96.9

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGG  267 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~~  267 (342)
                      ++.+|||+|||+|.++..+++.+.+|+|+|.++.+++.|+.++...+...+++++++|+.+++ ..++||+|++.--..+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH  210 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH  210 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence            467999999999999999998899999999999999999999877665558999999998875 4468999998544443


Q ss_pred             Ccc-ccccccccccCcCCCCchhhhHhhh-----------------ccCCCceeecCCCCCHHHHHHhh-CCCcEEEEec
Q psy15742        268 PEY-ARSSFSIDNIFPEQGGGRRLFQVAR-----------------GISPNVGYYLPRTSDVFEIFHDS-GKKGSFISLT  328 (342)
Q Consensus       268 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~l~~~~-~~~~~i~~i~  328 (342)
                      ... ......+.+++++  ||..++....                 ...+.......+-.+..++..++ ..|+++.++.
T Consensus       211 v~d~~~~L~~l~r~LkP--GG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~  288 (322)
T PLN02396        211 VANPAEFCKSLSALTIP--NGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA  288 (322)
T ss_pred             cCCHHHHHHHHHHHcCC--CcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence            321 1133344455544  4443322111                 00111111111223455666554 3578888887


Q ss_pred             ccCCCCCCC
Q psy15742        329 GRQMFSPSQ  337 (342)
Q Consensus       329 ~~~~fp~t~  337 (342)
                      +....|.+.
T Consensus       289 G~~~~p~~~  297 (322)
T PLN02396        289 GFVYNPITG  297 (322)
T ss_pred             eeEEcCcCC
Confidence            777666543

>PLN02244 tocopherol O-methyltransferase

Probab=99.25  E-value=3.6e-11  Score=113.65  Aligned_cols=80  Identities=25%  Similarity=0.292  Sum_probs=70.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      +++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..++.++++++++|+.+.+ ++++||+|++.-..
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~  196 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG  196 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence            45789999999999999999986 78999999999999999999999998778999999998875 55789999996554


Q ss_pred             CC
Q psy15742        266 GG  267 (342)
Q Consensus       266 ~~  267 (342)
                      .+
T Consensus       197 ~h  198 (340)
T PLN02244        197 EH  198 (340)
T ss_pred             hc
Confidence            43

>KOG1271|consensus

Probab=99.24  E-value=1.9e-10  Score=95.93  Aligned_cols=136  Identities=21%  Similarity=0.145  Sum_probs=91.4

Q ss_pred             CCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      ..+|||+|||.|.+...+++.+  ...+|+|.|+.+++.|+..++..++++.|+|.+.|+.+.. ..++||+|.----|.
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D  147 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD  147 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence            3499999999999999999974  3489999999999999999999999877999999998743 334666655422222


Q ss_pred             CCcccccccccc-ccCcCCCCchhhhHhhhccCC-CceeecCCCCCHHHHHHhhCC-CcEEEEecccCCC
Q psy15742        267 GPEYARSSFSID-NIFPEQGGGRRLFQVARGISP-NVGYYLPRTSDVFEIFHDSGK-KGSFISLTGRQMF  333 (342)
Q Consensus       267 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~l~~~~~~-~~~i~~i~~~~~f  333 (342)
                      ..+..+....-+ .++-      ..  .-+.+++ +++...+.|++..++.+.+.. ++.+....|.+.|
T Consensus       148 AisLs~d~~~~r~~~Y~------d~--v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~~~tvp~ptF  209 (227)
T KOG1271|consen  148 AISLSPDGPVGRLVVYL------DS--VEKLLSPGGIFVITSCNFTKDELVEEFENFNFEYLSTVPTPTF  209 (227)
T ss_pred             eeecCCCCcccceeeeh------hh--HhhccCCCcEEEEEecCccHHHHHHHHhcCCeEEEEeeccceE
Confidence            222111000000 1111      11  1122334 444455999999999987654 4777777777654

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.22  E-value=8.9e-11  Score=114.58  Aligned_cols=85  Identities=22%  Similarity=0.334  Sum_probs=73.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----CCCccE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----SLQGDV  258 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----~~~~D~  258 (342)
                      .++|.+|||+|||+|+.+..+++.   ..+|+++|+++.+++.+++|++.+|+. +++++++|+.+...     .++||.
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~  328 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDR  328 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCE
Confidence            356889999999999999999886   358999999999999999999999995 69999999987641     357999


Q ss_pred             EEEcCCCCCCcccc
Q psy15742        259 VFLSPPWGGPEYAR  272 (342)
Q Consensus       259 Ii~nPP~~~~~~~~  272 (342)
                      |++|||+.+.....
T Consensus       329 Vl~DaPCSg~G~~~  342 (434)
T PRK14901        329 ILLDAPCSGLGTLH  342 (434)
T ss_pred             EEEeCCCCcccccc
Confidence            99999998864433

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.22  E-value=1e-10  Score=113.92  Aligned_cols=81  Identities=25%  Similarity=0.374  Sum_probs=70.7

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFL  261 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~  261 (342)
                      ..+|.+|||+|||+|+.+..+++.+  .+|+|+|+|+.+++.+++|++.+|+  +++++++|+.+..   ...+||.|++
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~  319 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILL  319 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEE
Confidence            4578899999999999999999873  5999999999999999999999998  4789999998753   2457999999


Q ss_pred             cCCCCCCc
Q psy15742        262 SPPWGGPE  269 (342)
Q Consensus       262 nPP~~~~~  269 (342)
                      |||+.+..
T Consensus       320 D~Pcs~~G  327 (427)
T PRK10901        320 DAPCSATG  327 (427)
T ss_pred             CCCCCccc
Confidence            99998753

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.22  E-value=1.2e-10  Score=105.57  Aligned_cols=85  Identities=28%  Similarity=0.401  Sum_probs=67.7

Q ss_pred             CCCHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC
Q psy15742        173 SVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA  251 (342)
Q Consensus       173 ~~~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~  251 (342)
                      +.++..+++.+.....++.+|||+|||+|.+++.+++.+. +|+|+|+|+.+++.|++|++.+++.+++.+..+|.    
T Consensus       103 h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~----  178 (250)
T PRK00517        103 HPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL----  178 (250)
T ss_pred             CHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC----
Confidence            3344556666666667789999999999999998888754 59999999999999999999999854555544432    


Q ss_pred             CCCCccEEEEcCC
Q psy15742        252 PSLQGDVVFLSPP  264 (342)
Q Consensus       252 ~~~~~D~Ii~nPP  264 (342)
                         +||+|++|..
T Consensus       179 ---~fD~Vvani~  188 (250)
T PRK00517        179 ---KADVIVANIL  188 (250)
T ss_pred             ---CcCEEEEcCc
Confidence               7999999854

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.22  E-value=1.2e-10  Score=113.56  Aligned_cols=90  Identities=20%  Similarity=0.283  Sum_probs=72.9

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFL  261 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~  261 (342)
                      ..+|.+|||+|||+|+.+..+++.  ..+|+|+|+++.+++.+++|++.+|+..++.+..+|.....   +..+||.|++
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll  315 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL  315 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence            356889999999999999999986  37999999999999999999999998534455778876543   3457999999


Q ss_pred             cCCCCCCcccccccc
Q psy15742        262 SPPWGGPEYARSSFS  276 (342)
Q Consensus       262 nPP~~~~~~~~~~~~  276 (342)
                      |||+.+.....+..+
T Consensus       316 DaPcSg~G~~~~~p~  330 (426)
T TIGR00563       316 DAPCSATGVIRRHPD  330 (426)
T ss_pred             cCCCCCCcccccCcc
Confidence            999998765443333

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.21  E-value=2.7e-10  Score=100.05  Aligned_cols=79  Identities=15%  Similarity=0.091  Sum_probs=68.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP  263 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nP  263 (342)
                      +++.+|||+|||+|..+..+++.   +.+|+|+|+++.+++.|++|+..+++.++++++.+|+.+.. ...+||+|+++-
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~  150 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA  150 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEcc
Confidence            45789999999999999988875   36999999999999999999999998667999999998754 345899999987


Q ss_pred             CCC
Q psy15742        264 PWG  266 (342)
Q Consensus       264 P~~  266 (342)
                      +..
T Consensus       151 ~~~  153 (205)
T PRK13944        151 AAS  153 (205)
T ss_pred             Ccc
Confidence            643

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.20  E-value=1.2e-10  Score=100.31  Aligned_cols=73  Identities=23%  Similarity=0.252  Sum_probs=61.9

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  264 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP  264 (342)
                      +.++||+|||.|..++++|+.|..|+++|.|+.+++.+++.++..++  +++..+.|+.+......||+|++.--
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~~~~~yD~I~st~v  103 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFDFPEEYDFIVSTVV  103 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS-TTTEEEEEEESS
T ss_pred             CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhccccCCcCEEEEEEE
Confidence            55999999999999999999999999999999999999999999998  59999999988876678999998533

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.20  E-value=9.4e-11  Score=108.33  Aligned_cols=77  Identities=19%  Similarity=0.123  Sum_probs=68.3

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~  268 (342)
                      +.+|||+|||+|.+++.+++.|.+|+|+|+|+.+++.++++++.+++  ++++...|+.......+||+|++...++..
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l  197 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMFL  197 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhhC
Confidence            45999999999999999999999999999999999999999999888  689999998776556689999998776544

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.18  E-value=2.9e-10  Score=96.16  Aligned_cols=75  Identities=31%  Similarity=0.502  Sum_probs=68.1

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC-CccEEEEc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-QGDVVFLS  262 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~-~~D~Ii~n  262 (342)
                      +.++++++|+|||||++++++|..  ..+|+++|.++++++..++|+++.|+ +|++++.+|+.+.+++. ++|.||+.
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~~~~daiFIG  109 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDLPSPDAIFIG  109 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCCCCCCEEEEC
Confidence            457899999999999999999954  68999999999999999999999997 69999999999987654 69999994

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.18  E-value=1.2e-10  Score=104.10  Aligned_cols=74  Identities=35%  Similarity=0.509  Sum_probs=56.1

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  262 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n  262 (342)
                      .+|.+|||+|||||.++..+++.   ..+|+|+|+|+.|++.|++++...+.. +++++++|+.+++ ++++||+|++.
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~  123 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCS  123 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHH
Confidence            35789999999999999999886   368999999999999999999988874 8999999999987 56799999983

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.17  E-value=2e-10  Score=112.52  Aligned_cols=83  Identities=28%  Similarity=0.392  Sum_probs=72.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFL  261 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~  261 (342)
                      .+++.+|||+|||+|+.++.+++.   ..+|+|+|+++.+++.+++|++.+|+. +++++++|+.+...  ...||+|++
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~  326 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKILV  326 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEEE
Confidence            356789999999999999999875   468999999999999999999999985 59999999987642  257999999


Q ss_pred             cCCCCCCcc
Q psy15742        262 SPPWGGPEY  270 (342)
Q Consensus       262 nPP~~~~~~  270 (342)
                      |||+.+...
T Consensus       327 D~Pcsg~G~  335 (444)
T PRK14902        327 DAPCSGLGV  335 (444)
T ss_pred             cCCCCCCee
Confidence            999987643

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.16  E-value=2.7e-10  Score=101.11  Aligned_cols=73  Identities=25%  Similarity=0.333  Sum_probs=65.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  262 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n  262 (342)
                      .++.+|||+|||+|.++..++..+.+|+|+|+|+.+++.|++++...+..+++++.++|+.+..  .+||+|++.
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~  126 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCM  126 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEh
Confidence            3578999999999999999998888999999999999999999988877568999999998765  689999874

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.14  E-value=4.4e-10  Score=100.43  Aligned_cols=80  Identities=20%  Similarity=0.323  Sum_probs=68.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP  263 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nP  263 (342)
                      +++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++++...++ ++++++++|+.+.+ ++.+||+|+++.
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~  122 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGF  122 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCCCccEEEEec
Confidence            45789999999999999999875   36999999999999999999988887 58999999998865 456899999987


Q ss_pred             CCCCC
Q psy15742        264 PWGGP  268 (342)
Q Consensus       264 P~~~~  268 (342)
                      +++..
T Consensus       123 ~l~~~  127 (231)
T TIGR02752       123 GLRNV  127 (231)
T ss_pred             ccccC
Confidence            66543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.14  E-value=9.7e-10  Score=95.08  Aligned_cols=75  Identities=25%  Similarity=0.383  Sum_probs=64.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  264 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP  264 (342)
                      .++.+|||+|||+|.+++.+++.  ..+|+++|+|+.+++.|++|++.+++. +++++++|+.... ..+||+|+++..
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~~-~~~~D~v~~~~~  106 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIEL-PGKADAIFIGGS  106 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhhc-CcCCCEEEECCC
Confidence            45789999999999999999986  469999999999999999999999884 7999999985433 357999999754

>TIGR00740 methyltransferase, putative

Probab=99.12  E-value=5.4e-10  Score=100.49  Aligned_cols=80  Identities=16%  Similarity=0.181  Sum_probs=67.3

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  262 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n  262 (342)
                      .+++.+|||+|||+|..+..+++.    +.+++|+|+|+.|++.|++++...+...+++++++|+.+.+.. .+|+|+++
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~  129 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILN  129 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeee
Confidence            356789999999999999999874    5789999999999999999998777655899999999887543 58999986


Q ss_pred             CCCCC
Q psy15742        263 PPWGG  267 (342)
Q Consensus       263 PP~~~  267 (342)
                      -..+.
T Consensus       130 ~~l~~  134 (239)
T TIGR00740       130 FTLQF  134 (239)
T ss_pred             cchhh
Confidence            65544

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.12  E-value=7.3e-10  Score=97.83  Aligned_cols=76  Identities=20%  Similarity=0.203  Sum_probs=66.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  262 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n  262 (342)
                      ++++.+|||+|||+|.++..+++.   ..+|+|+|+++.+++.|++|++.+|+ ++++++++|+.... +...||+|+++
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~fD~I~~~  152 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPYDRIYVT  152 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCcCEEEEC
Confidence            356889999999999999998876   26999999999999999999999988 48999999987654 45689999986


Q ss_pred             C
Q psy15742        263 P  263 (342)
Q Consensus       263 P  263 (342)
                      -
T Consensus       153 ~  153 (212)
T PRK13942        153 A  153 (212)
T ss_pred             C
Confidence            4

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.12  E-value=1.4e-09  Score=98.74  Aligned_cols=77  Identities=23%  Similarity=0.282  Sum_probs=66.5

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCcc---EEEEcCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD---VVFLSPP  264 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D---~Ii~nPP  264 (342)
                      .++.+|||+|||+|.++..+++.+..|+++|+|+.+++.++.++..   .++++++++|+.+.+.. .+|   .|++|+|
T Consensus        28 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~-~~d~~~~vvsNlP  103 (253)
T TIGR00755        28 LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP-DFPKQLKVVSNLP  103 (253)
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-HcCCcceEEEcCC
Confidence            3578999999999999999999988899999999999999988753   24799999999887533 466   9999999


Q ss_pred             CCCC
Q psy15742        265 WGGP  268 (342)
Q Consensus       265 ~~~~  268 (342)
                      |+..
T Consensus       104 y~i~  107 (253)
T TIGR00755       104 YNIS  107 (253)
T ss_pred             hhhH
Confidence            9865

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.11  E-value=3.5e-10  Score=99.23  Aligned_cols=79  Identities=15%  Similarity=0.131  Sum_probs=65.0

Q ss_pred             HHhcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742        184 ASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  261 (342)
Q Consensus       184 ~~~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~  261 (342)
                      ...++++.+|||+|||+|..+..+++.  +.+++|+|+|+.+++.|+++..      ++.+.++|+.+..++++||+|++
T Consensus        38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~~~~~~sfD~V~~  111 (204)
T TIGR03587        38 LNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFDPFKDNFFDLVLT  111 (204)
T ss_pred             HHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccCCCCCCCEEEEEE
Confidence            334566789999999999999999886  6899999999999999998752      46788999888446679999999


Q ss_pred             cCCCCCC
Q psy15742        262 SPPWGGP  268 (342)
Q Consensus       262 nPP~~~~  268 (342)
                      +--..+.
T Consensus       112 ~~vL~hl  118 (204)
T TIGR03587       112 KGVLIHI  118 (204)
T ss_pred             CChhhhC
Confidence            7665544

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.11  E-value=3.3e-10  Score=99.31  Aligned_cols=75  Identities=19%  Similarity=0.257  Sum_probs=64.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc-cccC---CCCCccEEEEc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF-FALA---PSLQGDVVFLS  262 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~-~~~~---~~~~~D~Ii~n  262 (342)
                      ++.+|||+|||+|..+..+++.  +.+|+|+|+|+.+++.|+++++.+++ ++++++++|+ ..+.   +.+.||+|+++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            3679999999999999999876  56899999999999999999999887 5799999999 4432   35689999997


Q ss_pred             CC
Q psy15742        263 PP  264 (342)
Q Consensus       263 PP  264 (342)
                      .|
T Consensus       119 ~~  120 (202)
T PRK00121        119 FP  120 (202)
T ss_pred             CC
Confidence            55

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.11  E-value=1.9e-09  Score=86.15  Aligned_cols=76  Identities=33%  Similarity=0.455  Sum_probs=64.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEEcC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSP  263 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~nP  263 (342)
                      +++.+|+|+|||+|.++..+++.  +.+|+|+|+|+.+++.+++|++.+++. +++++.+|+....  ...+||+|+++.
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~~~~   96 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVFIGG   96 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEEECC
Confidence            35679999999999999999986  468999999999999999999988874 7899999977533  235899999975


Q ss_pred             C
Q psy15742        264 P  264 (342)
Q Consensus       264 P  264 (342)
                      +
T Consensus        97 ~   97 (124)
T TIGR02469        97 S   97 (124)
T ss_pred             c
Confidence            4

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.11  E-value=2.1e-10  Score=89.02  Aligned_cols=67  Identities=34%  Similarity=0.453  Sum_probs=58.2

Q ss_pred             EEeccCCCcHHHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEE
Q psy15742        193 VIDGFCGCGGNTIQFAAVC-----QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFL  261 (342)
Q Consensus       193 vLDlgcGtG~~~~~~a~~~-----~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~  261 (342)
                      |||+|||+|..+..+++..     .+++|+|+|+.|++.++++....+.  +++++++|+.+++ ..++||+|++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~   73 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVC   73 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEE
Confidence            7999999999999999874     8999999999999999999988776  7899999999876 4559999999

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.11  E-value=8.2e-10  Score=96.49  Aligned_cols=77  Identities=26%  Similarity=0.440  Sum_probs=66.4

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFL  261 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~  261 (342)
                      +.++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.|++|++.+++.++++++++|+.+..+  ...||.|++
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~  117 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI  117 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence            346889999999999999999874   468999999999999999999999966789999999987542  357999999


Q ss_pred             cC
Q psy15742        262 SP  263 (342)
Q Consensus       262 nP  263 (342)
                      +.
T Consensus       118 ~~  119 (198)
T PRK00377        118 GG  119 (198)
T ss_pred             CC
Confidence            65

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=99.10  E-value=2.7e-10  Score=106.53  Aligned_cols=82  Identities=32%  Similarity=0.541  Sum_probs=61.6

Q ss_pred             CCCeEEeccCCCcHHHHHHHH---------hCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccccCC---CCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAA---------VCQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFALAP---SLQ  255 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~---------~~~~v~gvD~s~~~l~~a~~n~~~~gl~~-~i~~~~~D~~~~~~---~~~  255 (342)
                      ++.+|+|++||+|++.+.+.+         ....++|+|+++.++..|+.|+..+|... +..+..+|.+....   ...
T Consensus        46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~  125 (311)
T PF02384_consen   46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQK  125 (311)
T ss_dssp             TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--
T ss_pred             ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence            467899999999999999876         25789999999999999999998887643 34688999876543   358


Q ss_pred             ccEEEEcCCCCCCcc
Q psy15742        256 GDVVFLSPPWGGPEY  270 (342)
Q Consensus       256 ~D~Ii~nPP~~~~~~  270 (342)
                      ||+|++||||+...+
T Consensus       126 ~D~ii~NPPf~~~~~  140 (311)
T PF02384_consen  126 FDVIIGNPPFGSKEW  140 (311)
T ss_dssp             EEEEEEE--CTCES-
T ss_pred             cccccCCCCcccccc
Confidence            999999999998733

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=2.1e-09  Score=96.38  Aligned_cols=79  Identities=19%  Similarity=0.188  Sum_probs=69.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC--CccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL--QGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~--~~D~Ii~nPP~  265 (342)
                      .+++.|||+|+|.|.++..+++.+.+|+++|+|+.+++..++....   .++++++++|+.+.....  .++.|++|.||
T Consensus        29 ~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~---~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY  105 (259)
T COG0030          29 SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP---YDNLTVINGDALKFDFPSLAQPYKVVANLPY  105 (259)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc---ccceEEEeCchhcCcchhhcCCCEEEEcCCC
Confidence            4578999999999999999999999999999999999999988752   258999999999886443  68999999999


Q ss_pred             CCCc
Q psy15742        266 GGPE  269 (342)
Q Consensus       266 ~~~~  269 (342)
                      ...+
T Consensus       106 ~Iss  109 (259)
T COG0030         106 NISS  109 (259)
T ss_pred             cccH
Confidence            8875

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.09  E-value=9.3e-10  Score=97.40  Aligned_cols=139  Identities=17%  Similarity=0.155  Sum_probs=86.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCcEEEEEccccccCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV--------------SHKIQFIQGDFFALAPS  253 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl--------------~~~i~~~~~D~~~~~~~  253 (342)
                      +++.+|||+|||.|..++.+|..|.+|+|||+|+.+++.+..   .+++              ..++++.++|++++.+.
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~  112 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA  112 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCcc
Confidence            346799999999999999999999999999999999998743   2222              24789999999988533


Q ss_pred             --CCccEEEEcCCCCCCccc---cccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEec
Q psy15742        254 --LQGDVVFLSPPWGGPEYA---RSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLT  328 (342)
Q Consensus       254 --~~~D~Ii~nPP~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~  328 (342)
                        ..||.|+----+......   .....+.+++++  ||..++..... .+...---|...+..++..++.+.+.+..+.
T Consensus       113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p--gG~~~l~~~~~-~~~~~~gPp~~~~~~el~~~~~~~~~i~~~~  189 (218)
T PRK13255        113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPA--GCRGLLVTLDY-PQEELAGPPFSVSDEEVEALYAGCFEIELLE  189 (218)
T ss_pred             cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC--CCeEEEEEEEe-CCccCCCCCCCCCHHHHHHHhcCCceEEEee
Confidence              478888843222221111   122334455554  43211111111 1111000133456777888876668887776


Q ss_pred             ccCC
Q psy15742        329 GRQM  332 (342)
Q Consensus       329 ~~~~  332 (342)
                      ....
T Consensus       190 ~~~~  193 (218)
T PRK13255        190 RQDV  193 (218)
T ss_pred             eccc
Confidence            5543

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.09  E-value=3.7e-10  Score=102.94  Aligned_cols=80  Identities=23%  Similarity=0.331  Sum_probs=64.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEEEccccccC-CCCCccEEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASV--YGVSHKIQFIQGDFFALA-PSLQGDVVFL  261 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~--~~v~gvD~s~~~l~~a~~n~~~--~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~  261 (342)
                      +++.+|||+|||||.++..+++. +  .+|+|+|+|++|++.|+++...  .+..++++++++|+.+++ ++++||+|++
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~  151 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM  151 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence            45789999999999999999875 3  5899999999999999887642  222247999999999876 5568999999


Q ss_pred             cCCCCC
Q psy15742        262 SPPWGG  267 (342)
Q Consensus       262 nPP~~~  267 (342)
                      +--++.
T Consensus       152 ~~~l~~  157 (261)
T PLN02233        152 GYGLRN  157 (261)
T ss_pred             eccccc
Confidence            655443

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.09  E-value=6.4e-10  Score=100.72  Aligned_cols=74  Identities=19%  Similarity=0.247  Sum_probs=62.6

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGG  267 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~~  267 (342)
                      ++.+|||+|||+|.++..++..+.+|+|+|+|+.+++.|+.+..      ...++++|+.+++ ++.+||+|+++.+++.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~  115 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLAVQW  115 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence            36789999999999999998888999999999999999998753      3468899998865 4568999999988654


Q ss_pred             C
Q psy15742        268 P  268 (342)
Q Consensus       268 ~  268 (342)
                      .
T Consensus       116 ~  116 (251)
T PRK10258        116 C  116 (251)
T ss_pred             c
Confidence            3

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.08  E-value=1.4e-09  Score=95.98  Aligned_cols=78  Identities=17%  Similarity=0.149  Sum_probs=67.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      +++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|++|++.+++. +++++.+|..+.. ...+||+|+++.+..
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~I~~~~~~~  155 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYAPFDRILVTAAAP  155 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCCCcCEEEEccCch
Confidence            45789999999999999988887679999999999999999999999884 6999999987654 346899999987654

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.08  E-value=7.1e-10  Score=99.33  Aligned_cols=86  Identities=20%  Similarity=0.200  Sum_probs=71.2

Q ss_pred             HHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--
Q psy15742        178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--  252 (342)
Q Consensus       178 ~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--  252 (342)
                      .++..+.+..+ +.+|||+|||+|..++.++..   +.+|+++|+++++++.|++|++.+|+.++++++.+|+.+.++  
T Consensus        58 ~~L~~l~~~~~-~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l  136 (234)
T PLN02781         58 LFLSMLVKIMN-AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL  136 (234)
T ss_pred             HHHHHHHHHhC-CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence            34444444443 669999999999998888775   569999999999999999999999998899999999987642  


Q ss_pred             -----CCCccEEEEcCC
Q psy15742        253 -----SLQGDVVFLSPP  264 (342)
Q Consensus       253 -----~~~~D~Ii~nPP  264 (342)
                           ..+||+|++|.+
T Consensus       137 ~~~~~~~~fD~VfiDa~  153 (234)
T PLN02781        137 LNNDPKPEFDFAFVDAD  153 (234)
T ss_pred             HhCCCCCCCCEEEECCC
Confidence                 358999999965

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.07  E-value=5e-10  Score=101.71  Aligned_cols=73  Identities=22%  Similarity=0.223  Sum_probs=63.6

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.|+++        +++++++|+.++.+.++||+|+++..+
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~fD~v~~~~~l   99 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDTDVVVSNAAL   99 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCceEEEEehhh
Confidence            35789999999999999999987  67999999999999999763        468999999887666799999999988


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      +..
T Consensus       100 ~~~  102 (255)
T PRK14103        100 QWV  102 (255)
T ss_pred             hhC
Confidence            765

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.07  E-value=4.8e-10  Score=104.30  Aligned_cols=84  Identities=27%  Similarity=0.407  Sum_probs=75.3

Q ss_pred             HHHhcCCCCeEEeccCCCcHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC-CCccEEE
Q psy15742        183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-LQGDVVF  260 (342)
Q Consensus       183 i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~-v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~-~~~D~Ii  260 (342)
                      +.....+|.+|+|++||.|.+++.+|+.+.. |+++|+||.+++..++|++.|++.+.+..+++|+.+..+. +.+|-|+
T Consensus       182 va~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIi  261 (341)
T COG2520         182 VAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRII  261 (341)
T ss_pred             HHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEE
Confidence            3444566999999999999999999998655 9999999999999999999999987799999999999866 7899999


Q ss_pred             EcCCCC
Q psy15742        261 LSPPWG  266 (342)
Q Consensus       261 ~nPP~~  266 (342)
                      ++-|..
T Consensus       262 m~~p~~  267 (341)
T COG2520         262 MGLPKS  267 (341)
T ss_pred             eCCCCc
Confidence            998854

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.07  E-value=7.7e-10  Score=100.58  Aligned_cols=75  Identities=24%  Similarity=0.338  Sum_probs=65.5

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.|+++.      .+++++.+|+.++.+..+||+|+++..+
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~fD~v~~~~~l  103 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQALDLIFANASL  103 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCCccEEEEccCh
Confidence            45789999999999999999986  679999999999999999875      2688999999887666799999999888


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      +..
T Consensus       104 ~~~  106 (258)
T PRK01683        104 QWL  106 (258)
T ss_pred             hhC
Confidence            755

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.07  E-value=5e-10  Score=96.01  Aligned_cols=100  Identities=23%  Similarity=0.296  Sum_probs=80.1

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      ..+|.|+|||+|..+..++++  +..++|+|.|++|++.|+..+      .+++|..+|+.++.+....|++++|--++ 
T Consensus        31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~~~~dllfaNAvlq-  103 (257)
T COG4106          31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPEQPTDLLFANAVLQ-  103 (257)
T ss_pred             cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCCCccchhhhhhhhh-
Confidence            568999999999999999998  889999999999999997765      37999999999999888999999986654 


Q ss_pred             CccccccccccccCcCCCCchhhhHhhhccCCCceeec--CCCCC
Q psy15742        268 PEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL--PRTSD  310 (342)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~  310 (342)
                                  |+|+  ....+-.....+.+++++-+  |.|..
T Consensus       104 ------------Wlpd--H~~ll~rL~~~L~Pgg~LAVQmPdN~d  134 (257)
T COG4106         104 ------------WLPD--HPELLPRLVSQLAPGGVLAVQMPDNLD  134 (257)
T ss_pred             ------------hccc--cHHHHHHHHHhhCCCceEEEECCCccC
Confidence                        3343  34455556666677666655  66553

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.07  E-value=7.9e-10  Score=94.13  Aligned_cols=74  Identities=28%  Similarity=0.313  Sum_probs=62.2

Q ss_pred             HHHHHhcCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCc
Q psy15742        181 QHIASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQG  256 (342)
Q Consensus       181 ~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~  256 (342)
                      +.|.+.+++|.+|||+|||.|.+...+... +...+|+|+|++.+..|..+    |    +.++++|+.+-+   ++.+|
T Consensus         5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~d~sF   76 (193)
T PF07021_consen    5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFPDQSF   76 (193)
T ss_pred             HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCCCCCc
Confidence            456667788999999999999999999875 88999999999998777654    4    569999998765   56799


Q ss_pred             cEEEEc
Q psy15742        257 DVVFLS  262 (342)
Q Consensus       257 D~Ii~n  262 (342)
                      |.||++
T Consensus        77 D~VIls   82 (193)
T PF07021_consen   77 DYVILS   82 (193)
T ss_pred             cEEehH
Confidence            999994

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PLN02476 O-methyltransferase

Probab=99.05  E-value=4.6e-10  Score=102.09  Aligned_cols=88  Identities=17%  Similarity=0.165  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-
Q psy15742        177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-  252 (342)
Q Consensus       177 e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-  252 (342)
                      ..++..+.+..+ +++|||+|||+|..++++|+.   +.+|+++|.++++.+.|++|++.+|+.++++++.+|+.+.++ 
T Consensus       107 g~lL~~L~~~~~-ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~  185 (278)
T PLN02476        107 AQLLAMLVQILG-AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKS  185 (278)
T ss_pred             HHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence            345555555554 569999999999999999985   467999999999999999999999998899999999987642 


Q ss_pred             ------CCCccEEEEcCCC
Q psy15742        253 ------SLQGDVVFLSPPW  265 (342)
Q Consensus       253 ------~~~~D~Ii~nPP~  265 (342)
                            .++||+||+|++-
T Consensus       186 l~~~~~~~~FD~VFIDa~K  204 (278)
T PLN02476        186 MIQNGEGSSYDFAFVDADK  204 (278)
T ss_pred             HHhcccCCCCCEEEECCCH
Confidence                  2589999999983

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.04  E-value=7.5e-10  Score=96.40  Aligned_cols=110  Identities=20%  Similarity=0.200  Sum_probs=80.6

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEEEcC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSP  263 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii~nP  263 (342)
                      +.++||+|||+|.++..+|+.  ..+++|+|+++.+++.|+.++...++. +++++++|+.+.+    +.+.+|.|++|+
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            568999999999999999987  678999999999999999999999884 8999999998653    345899999997


Q ss_pred             CCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCC
Q psy15742        264 PWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPR  307 (342)
Q Consensus       264 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (342)
                      |-....   ......++..    ...+..+.+.+.+++.+++..
T Consensus        96 pdpw~k---~~h~~~r~~~----~~~l~~~~r~LkpgG~l~~~t  132 (194)
T TIGR00091        96 PDPWPK---KRHNKRRITQ----PHFLKEYANVLKKGGVIHFKT  132 (194)
T ss_pred             CCcCCC---CCccccccCC----HHHHHHHHHHhCCCCEEEEEe
Confidence            521110   0001111111    114555677777777776633

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.04  E-value=1.4e-09  Score=101.29  Aligned_cols=74  Identities=27%  Similarity=0.167  Sum_probs=62.3

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV----SHKIQFIQGDFFALAPSLQGDVVFLSPP  264 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl----~~~i~~~~~D~~~~~~~~~~D~Ii~nPP  264 (342)
                      ++.+|||+|||+|.+++.+++.+.+|+|+|+|+.|++.|++|+...+.    ..+++|..+|+.++  +++||+|++.-.
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~v  221 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLDV  221 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcCE
Confidence            467999999999999999999999999999999999999999876532    13678999998665  468999987533

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.03  E-value=8e-10  Score=100.83  Aligned_cols=78  Identities=21%  Similarity=0.214  Sum_probs=64.9

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  264 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP  264 (342)
                      ++++.+|||+|||+|..+..++.. +.+|+|+|+|+.+++.|+++...   .+++.++++|+.+.+ ++.+||+|++...
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~  126 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYSRDA  126 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEEhhh
Confidence            457889999999999999999875 77999999999999999998753   247999999998764 4568999999655


Q ss_pred             CCC
Q psy15742        265 WGG  267 (342)
Q Consensus       265 ~~~  267 (342)
                      +.+
T Consensus       127 l~h  129 (263)
T PTZ00098        127 ILH  129 (263)
T ss_pred             HHh
Confidence            433

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=5.2e-09  Score=90.49  Aligned_cols=75  Identities=20%  Similarity=0.174  Sum_probs=68.1

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  262 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n  262 (342)
                      ++++.+|||+|||+|+.+.-+|+.+.+|+++|..++..+.|++|++..|.. |+.++++|...-. +..+||.|+..
T Consensus        70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~aPyD~I~Vt  145 (209)
T COG2518          70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEEAPYDRIIVT  145 (209)
T ss_pred             CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCCCCcCEEEEe
Confidence            457999999999999999999999779999999999999999999999995 6999999988765 44799999985

>KOG1270|consensus

Probab=99.00  E-value=1.6e-10  Score=101.92  Aligned_cols=76  Identities=20%  Similarity=0.196  Sum_probs=61.2

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEEccccccCCCCCccEEEEcCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH-----KIQFIQGDFFALAPSLQGDVVFLSPP  264 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~-----~i~~~~~D~~~~~~~~~~D~Ii~nPP  264 (342)
                      |.+|||+|||+|.++..+|+.|..|+|||.++.+++.|++........+     ++++.+.|+....  +.||.|+|.--
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcsev  167 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSEV  167 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHHH
Confidence            5789999999999999999999999999999999999999955443322     3667777777663  35999999544


Q ss_pred             CCC
Q psy15742        265 WGG  267 (342)
Q Consensus       265 ~~~  267 (342)
                      +.+
T Consensus       168 leH  170 (282)
T KOG1270|consen  168 LEH  170 (282)
T ss_pred             HHH
Confidence            443

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.00  E-value=3.6e-09  Score=97.00  Aligned_cols=80  Identities=28%  Similarity=0.268  Sum_probs=67.8

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  262 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n  262 (342)
                      ++++.+|||+|||+|..++.+++. +  .+|+|+|+++.+++.|++|....++ ++++++.+|+.+++ +++.||+|+++
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~  153 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISN  153 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEc
Confidence            456889999999999988877765 3  4799999999999999999998888 48999999998765 45689999998


Q ss_pred             CCCCC
Q psy15742        263 PPWGG  267 (342)
Q Consensus       263 PP~~~  267 (342)
                      --++.
T Consensus       154 ~v~~~  158 (272)
T PRK11873        154 CVINL  158 (272)
T ss_pred             CcccC
Confidence            65543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.00  E-value=1.1e-09  Score=108.20  Aligned_cols=80  Identities=24%  Similarity=0.287  Sum_probs=67.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  264 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP  264 (342)
                      ++++.+|||+|||+|..++.+++. +.+|+|+|+|+.+++.|++|..  +...+++|+++|+.+.+ ++++||+|++.-.
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~  341 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSRDT  341 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEECCc
Confidence            456789999999999999999886 7899999999999999999876  33347999999998765 4568999999765


Q ss_pred             CCCC
Q psy15742        265 WGGP  268 (342)
Q Consensus       265 ~~~~  268 (342)
                      +...
T Consensus       342 l~h~  345 (475)
T PLN02336        342 ILHI  345 (475)
T ss_pred             cccc
Confidence            5443

>KOG3191|consensus

Probab=98.99  E-value=3.1e-09  Score=88.80  Aligned_cols=81  Identities=21%  Similarity=0.343  Sum_probs=72.4

Q ss_pred             CCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      ..-++|+|||+|..+-++++.   .....++|+||.+++...+.++.|+.  +++.++.|...-...++.|+++.||||-
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfNPPYV  121 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPPYV  121 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEECCCcC
Confidence            567999999999999999986   45678999999999999999999998  7899999999888778999999999999


Q ss_pred             CCcccc
Q psy15742        267 GPEYAR  272 (342)
Q Consensus       267 ~~~~~~  272 (342)
                      ..+..+
T Consensus       122 pt~~~~  127 (209)
T KOG3191|consen  122 PTSDEE  127 (209)
T ss_pred             cCCccc
Confidence            876543

>PRK05785 hypothetical protein; Provisional

Probab=98.99  E-value=2.1e-09  Score=95.90  Aligned_cols=70  Identities=24%  Similarity=0.230  Sum_probs=58.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||||.++..+++. +.+|+|+|+|++|++.|+.+.         .++++|+.+++ ++++||+|++.-..
T Consensus        50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~~d~sfD~v~~~~~l  120 (226)
T PRK05785         50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPFRDKSFDVVMSSFAL  120 (226)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCCCCCCEEEEEecChh
Confidence            44779999999999999999987 689999999999999998641         35788988876 56789999996544


Q ss_pred             C
Q psy15742        266 G  266 (342)
Q Consensus       266 ~  266 (342)
                      +
T Consensus       121 ~  121 (226)
T PRK05785        121 H  121 (226)
T ss_pred             h
Confidence            3

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.99  E-value=7.8e-10  Score=98.33  Aligned_cols=75  Identities=20%  Similarity=0.218  Sum_probs=65.3

Q ss_pred             eEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        192 VVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       192 ~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      +|||+|||+|..+..+++.  +.+|+|+|+|+.+++.|+.++...|+.++++++.+|+.+.+..++||+|++.-.++
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~   78 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIH   78 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHH
Confidence            6999999999999999886  47899999999999999999999998888999999997655445899999854443

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.98  E-value=3.4e-09  Score=94.45  Aligned_cols=76  Identities=26%  Similarity=0.299  Sum_probs=65.1

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||+|.++..+++.+..|+|+|+|+.+++.|+++....+..+++++..+|+..  ..+.||+|++.-.+
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l  137 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVL  137 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchh
Confidence            35679999999999999999988888999999999999999999888875689999999533  24679999986554

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.96  E-value=7.3e-09  Score=90.30  Aligned_cols=75  Identities=21%  Similarity=0.302  Sum_probs=62.1

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEEcC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSP  263 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~nP  263 (342)
                      +++.+|||+|||+|.+++.+++.  +.+|+|+|+|+.+++.|++|++.+++ ++++++.+|+.+..+  ...+|.++++.
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~d~v~~~~  117 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAPDRVCIEG  117 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence            35789999999999999999865  57999999999999999999999998 479999999875321  12467777753

>PRK10742 putative methyltransferase; Provisional

Probab=98.96  E-value=3.6e-09  Score=93.98  Aligned_cols=82  Identities=21%  Similarity=0.336  Sum_probs=71.0

Q ss_pred             CCCC--eEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc------C--CCCcEEEEEccccccCC--CCC
Q psy15742        188 KASD--VVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY------G--VSHKIQFIQGDFFALAP--SLQ  255 (342)
Q Consensus       188 ~~~~--~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~------g--l~~~i~~~~~D~~~~~~--~~~  255 (342)
                      ++|.  +|||+++|+|..++.++..|+.|+++|.|+......++|++..      +  +..+++++++|..+++.  ...
T Consensus        85 k~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~  164 (250)
T PRK10742         85 KGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPR  164 (250)
T ss_pred             CCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCC
Confidence            4555  8999999999999999999989999999999999999999884      2  22479999999998863  237


Q ss_pred             ccEEEEcCCCCCCc
Q psy15742        256 GDVVFLSPPWGGPE  269 (342)
Q Consensus       256 ~D~Ii~nPP~~~~~  269 (342)
                      ||+|++||||....
T Consensus       165 fDVVYlDPMfp~~~  178 (250)
T PRK10742        165 PQVVYLDPMFPHKQ  178 (250)
T ss_pred             CcEEEECCCCCCCc
Confidence            99999999999864

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.96  E-value=2e-09  Score=81.55  Aligned_cols=69  Identities=30%  Similarity=0.320  Sum_probs=56.9

Q ss_pred             EeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        194 IDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       194 LDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      ||+|||+|..+..+++. +.+++|+|+|+.+++.++++....    ++.++++|+.+++ ++++||+|++.--++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~   71 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLH   71 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCcccccccccccccccee
Confidence            79999999999999999 999999999999999999988654    4569999999987 667999999964443

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.95  E-value=4.5e-09  Score=99.65  Aligned_cols=74  Identities=19%  Similarity=0.252  Sum_probs=66.6

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---CCCCCccEEEEcCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGDVVFLSPP  264 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---~~~~~~D~Ii~nPP  264 (342)
                      +..+||+|||+|.+++.+|+.  ...++|+|+++.+++.|.+++..+|+. ++.++++|+..+   .+++++|.|+++.|
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~s~D~I~lnFP  201 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSNSVEKIFVHFP  201 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence            568999999999999999987  679999999999999999999999984 799999998654   36679999999876

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.95  E-value=3e-09  Score=93.11  Aligned_cols=75  Identities=27%  Similarity=0.388  Sum_probs=66.1

Q ss_pred             CCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-------CCCccEE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-------SLQGDVV  259 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-------~~~~D~I  259 (342)
                      ..+||++|||+|..++++|+.   +.+|+++|.+++..+.|++|++..|+.++++++.+|+.+.++       .++||+|
T Consensus        46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V  125 (205)
T PF01596_consen   46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV  125 (205)
T ss_dssp             -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred             CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence            569999999999999999985   679999999999999999999999998899999999987642       2479999


Q ss_pred             EEcCC
Q psy15742        260 FLSPP  264 (342)
Q Consensus       260 i~nPP  264 (342)
                      |+|-.
T Consensus       126 FiDa~  130 (205)
T PF01596_consen  126 FIDAD  130 (205)
T ss_dssp             EEEST
T ss_pred             EEccc
Confidence            99865

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK04457 spermidine synthase; Provisional

Probab=98.95  E-value=8.4e-09  Score=93.97  Aligned_cols=107  Identities=10%  Similarity=0.138  Sum_probs=78.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEEcC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSP  263 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~nP  263 (342)
                      +++.+|||+|||+|.++..+++.  +.+++++|+|+.+++.|++++...+..++++++.+|+.++..  ..+||+|++|.
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            34678999999999999999876  678999999999999999998766554689999999987652  34799999984


Q ss_pred             CCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        264 PWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       264 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                       |.......      .+.    ....+..+...+.+++++.+
T Consensus       145 -~~~~~~~~------~l~----t~efl~~~~~~L~pgGvlvi  175 (262)
T PRK04457        145 -FDGEGIID------ALC----TQPFFDDCRNALSSDGIFVV  175 (262)
T ss_pred             -CCCCCCcc------ccC----cHHHHHHHHHhcCCCcEEEE
Confidence             33221110      011    01244556666777777765

>PRK00811 spermidine synthase; Provisional

Probab=98.92  E-value=8.1e-09  Score=95.15  Aligned_cols=76  Identities=14%  Similarity=0.204  Sum_probs=64.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC--C--CCcEEEEEccccccCC--CCCccEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V--SHKIQFIQGDFFALAP--SLQGDVV  259 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~g--l--~~~i~~~~~D~~~~~~--~~~~D~I  259 (342)
                      +++.+||++|||+|..+..+++.  ..+|++||+|+.+++.|++++...+  .  +++++++.+|+.++..  .++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            45679999999999999999886  4689999999999999999986532  2  3589999999988763  4689999


Q ss_pred             EEcC
Q psy15742        260 FLSP  263 (342)
Q Consensus       260 i~nP  263 (342)
                      ++|.
T Consensus       155 i~D~  158 (283)
T PRK00811        155 IVDS  158 (283)
T ss_pred             EECC
Confidence            9984

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=4.8e-09  Score=92.75  Aligned_cols=78  Identities=23%  Similarity=0.289  Sum_probs=71.6

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      +.+|.+|+|.|.|+|.++.++|..   -.+|+++|+.++.++.|++|++..|+.+++++..+|+.+......||.||+|-
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDm  171 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDL  171 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcC
Confidence            567999999999999999999974   36999999999999999999999999877999999999887666999999998


Q ss_pred             C
Q psy15742        264 P  264 (342)
Q Consensus       264 P  264 (342)
                      |
T Consensus       172 p  172 (256)
T COG2519         172 P  172 (256)
T ss_pred             C
Confidence            8

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.91  E-value=3.6e-09  Score=99.21  Aligned_cols=102  Identities=16%  Similarity=0.131  Sum_probs=70.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      +|.+|||+|||+|.++..++..+ ..|+|+|.|+.++..++......+...++.++.+|+.+++....||+|++.--.++
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~H  201 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYH  201 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhhc
Confidence            47899999999999999999874 57999999999987655443333333479999999988876678999998533322


Q ss_pred             C-ccccccccccccCcCCCCchhhhH
Q psy15742        268 P-EYARSSFSIDNIFPEQGGGRRLFQ  292 (342)
Q Consensus       268 ~-~~~~~~~~~~~~~~~~~~~~~~~~  292 (342)
                      . +.......+.+.+++  ||..+++
T Consensus       202 ~~dp~~~L~~l~~~Lkp--GG~lvl~  225 (322)
T PRK15068        202 RRSPLDHLKQLKDQLVP--GGELVLE  225 (322)
T ss_pred             cCCHHHHHHHHHHhcCC--CcEEEEE
Confidence            2 222233334455544  4544443

>PRK04266 fibrillarin; Provisional

Probab=98.90  E-value=2.5e-08  Score=88.70  Aligned_cols=75  Identities=16%  Similarity=0.094  Sum_probs=61.4

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVF  260 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii  260 (342)
                      ++++.+|||+|||+|.++..+++.  ...|+|+|+++.|++.+.++++..   .++.++.+|+.+..    ...+||+|+
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D~i~  146 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVDVIY  146 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCCEEE
Confidence            357889999999999999999987  368999999999999888887653   37899999987521    124699999


Q ss_pred             EcCC
Q psy15742        261 LSPP  264 (342)
Q Consensus       261 ~nPP  264 (342)
                      +|-+
T Consensus       147 ~d~~  150 (226)
T PRK04266        147 QDVA  150 (226)
T ss_pred             ECCC
Confidence            8755

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.90  E-value=1e-08  Score=89.92  Aligned_cols=78  Identities=21%  Similarity=0.244  Sum_probs=63.8

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  262 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n  262 (342)
                      +++|.+|||+|||||..+..++.. +  .+|+++|.++...+.|++|++..+.. ++.++++|..... ...+||.|+++
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~~apfD~I~v~  148 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPEEAPFDRIIVT  148 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGGG-SEEEEEES
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccccCCCcCEEEEe
Confidence            567999999999999999999986 3  47999999999999999999999984 8999999987654 44689999997


Q ss_pred             CCC
Q psy15742        263 PPW  265 (342)
Q Consensus       263 PP~  265 (342)
                      ...
T Consensus       149 ~a~  151 (209)
T PF01135_consen  149 AAV  151 (209)
T ss_dssp             SBB
T ss_pred             ecc
Confidence            654

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK06922 hypothetical protein; Provisional

Probab=98.89  E-value=5e-09  Score=104.47  Aligned_cols=77  Identities=18%  Similarity=0.181  Sum_probs=66.0

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nP  263 (342)
                      ++.+|||+|||+|.++..+++.  +.+++|+|+|+.|++.|+.+....+.  ++.++++|+.+++   ++++||+|++++
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVVsn~  495 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIVYSS  495 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEEEch
Confidence            5779999999999999888875  67999999999999999998876654  6889999998754   456899999998


Q ss_pred             CCCC
Q psy15742        264 PWGG  267 (342)
Q Consensus       264 P~~~  267 (342)
                      +++.
T Consensus       496 vLH~  499 (677)
T PRK06922        496 ILHE  499 (677)
T ss_pred             HHHh
Confidence            8764

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.89  E-value=1.6e-08  Score=98.91  Aligned_cols=86  Identities=22%  Similarity=0.272  Sum_probs=73.7

Q ss_pred             hcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEE
Q psy15742        186 RCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVF  260 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii  260 (342)
                      ..++|.+|||+|||.|+-+.++|..   ...++++|+++..++..++|+++.|+. ++.+.+.|...+.  ....||.|+
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~IL  188 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAIL  188 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEE
Confidence            3467899999999999999999885   358999999999999999999999994 7899999987653  234799999


Q ss_pred             EcCCCCCCcccc
Q psy15742        261 LSPPWGGPEYAR  272 (342)
Q Consensus       261 ~nPP~~~~~~~~  272 (342)
                      +|+|+++.....
T Consensus       189 vDaPCSG~G~~r  200 (470)
T PRK11933        189 LDAPCSGEGTVR  200 (470)
T ss_pred             EcCCCCCCcccc
Confidence            999999875444

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.89  E-value=1.1e-08  Score=89.08  Aligned_cols=80  Identities=23%  Similarity=0.190  Sum_probs=63.0

Q ss_pred             HHHHhcCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---CCCCCcc
Q psy15742        182 HIASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGD  257 (342)
Q Consensus       182 ~i~~~~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---~~~~~~D  257 (342)
                      .+...++++.+|||+|||+|.++..+++. +..++|+|+|+.+++.|+.+        +++++++|+.+.   .++.+||
T Consensus         6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD   77 (194)
T TIGR02081         6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFD   77 (194)
T ss_pred             HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcC
Confidence            34445567889999999999999988765 66889999999999888642        467888888752   2356899


Q ss_pred             EEEEcCCCCCCc
Q psy15742        258 VVFLSPPWGGPE  269 (342)
Q Consensus       258 ~Ii~nPP~~~~~  269 (342)
                      +|+++.+++...
T Consensus        78 ~Vi~~~~l~~~~   89 (194)
T TIGR02081        78 YVILSQTLQATR   89 (194)
T ss_pred             EEEEhhHhHcCc
Confidence            999998887653

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.88  E-value=1.5e-08  Score=94.68  Aligned_cols=74  Identities=23%  Similarity=0.317  Sum_probs=64.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEc
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLS  262 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~n  262 (342)
                      +++.+|||+|||+|.++..+++..   ..|+|+|+++++++.|++|++.+|+ +++.++++|+.+..+ ...||+|+++
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~~  156 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIFVT  156 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEEEC
Confidence            457899999999999999999863   3699999999999999999999998 479999999876643 3579999996

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.87  E-value=5.2e-09  Score=89.39  Aligned_cols=70  Identities=26%  Similarity=0.445  Sum_probs=56.2

Q ss_pred             CeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      .++||+|||.|.++..+|..+.+++++|+|+.+++.|++++.  +. ++++++++|+.+..+.++||+|++.-
T Consensus        45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~~-~~V~~~~~dvp~~~P~~~FDLIV~SE  114 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--GL-PHVEWIQADVPEFWPEGRFDLIVLSE  114 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T--SSEEEEES-TTT---SS-EEEEEEES
T ss_pred             ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--CC-CCeEEEECcCCCCCCCCCeeEEEEeh
Confidence            589999999999999999999999999999999999999987  33 48999999999988889999999853

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.86  E-value=1.7e-08  Score=96.16  Aligned_cols=74  Identities=20%  Similarity=0.305  Sum_probs=66.1

Q ss_pred             CeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEEEcCCC
Q psy15742        191 DVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSPPW  265 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii~nPP~  265 (342)
                      -+|||++||+|..++.+++.   ..+|+++|+|+.+++.+++|++.|++. +++++++|+..++..  .+||+|++|| |
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP-f  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP-F  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence            48999999999999999986   378999999999999999999999984 789999999987642  5799999999 5


Q ss_pred             C
Q psy15742        266 G  266 (342)
Q Consensus       266 ~  266 (342)
                      +
T Consensus       124 G  124 (374)
T TIGR00308       124 G  124 (374)
T ss_pred             C
Confidence            4

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.85  E-value=1e-08  Score=102.61  Aligned_cols=80  Identities=21%  Similarity=0.262  Sum_probs=62.4

Q ss_pred             CCeEEeccCCCcHHHHHHHHhC----------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc----C--CC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVC----------QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL----A--PS  253 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~----------~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~----~--~~  253 (342)
                      +.+|+|++||+|.+.+.++...          ..++|+|+++.++..|+.|+...+. ..+.+.+.|....    .  ..
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccccc
Confidence            4589999999999999987641          5789999999999999999987762 2456666665432    1  12


Q ss_pred             CCccEEEEcCCCCCCcc
Q psy15742        254 LQGDVVFLSPPWGGPEY  270 (342)
Q Consensus       254 ~~~D~Ii~nPP~~~~~~  270 (342)
                      +.||+|+.||||+....
T Consensus       111 ~~fD~IIgNPPy~~~k~  127 (524)
T TIGR02987       111 DLFDIVITNPPYGRLKP  127 (524)
T ss_pred             CcccEEEeCCCccccCc
Confidence            47999999999998643

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.85  E-value=1.3e-08  Score=90.36  Aligned_cols=77  Identities=23%  Similarity=0.157  Sum_probs=66.0

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEEEcCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSPPWGG  267 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii~nPP~~~  267 (342)
                      +.+|||+|||+|.++..+++.+.+++|+|.++.+++.++.++...+.. ++++..+|+.+++..  .+||+|+++-.++.
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~  124 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH  124 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence            679999999999999999888888999999999999999999887763 689999998877533  68999999765544

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG2671|consensus

Probab=98.85  E-value=2.3e-09  Score=97.74  Aligned_cols=85  Identities=31%  Similarity=0.441  Sum_probs=72.0

Q ss_pred             HhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHH-------HHHHHHHHcCCCC-cEEEEEccccccC--CCC
Q psy15742        185 SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR-------LAQHNASVYGVSH-KIQFIQGDFFALA--PSL  254 (342)
Q Consensus       185 ~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~-------~a~~n~~~~gl~~-~i~~~~~D~~~~~--~~~  254 (342)
                      +.+++|+-|+|++.|||++.+.+|..|..|+|.|+|-.+++       -.+.|++.+|..+ -+.++.+|..+.+  .+.
T Consensus       204 Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~  283 (421)
T KOG2671|consen  204 AMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL  283 (421)
T ss_pred             hccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcc
Confidence            45678999999999999999999999999999999999887       3578889999643 3567888887765  455


Q ss_pred             CccEEEEcCCCCCCc
Q psy15742        255 QGDVVFLSPPWGGPE  269 (342)
Q Consensus       255 ~~D~Ii~nPP~~~~~  269 (342)
                      .||.|+|||||+...
T Consensus       284 ~fDaIvcDPPYGVRe  298 (421)
T KOG2671|consen  284 KFDAIVCDPPYGVRE  298 (421)
T ss_pred             eeeEEEeCCCcchhh
Confidence            899999999999764

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.84  E-value=2.2e-08  Score=88.15  Aligned_cols=125  Identities=18%  Similarity=0.103  Sum_probs=77.1

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---------CCCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---------APSL  254 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---------~~~~  254 (342)
                      ++++.+|||+|||+|.++..+++.   ...|+|+|+++ +          +.. .+++++++|+.+.         ....
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFRDELVLKALLERVGDS  116 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCCChHHHHHHHHHhCCC
Confidence            456889999999999999999886   25899999998 1          123 3689999999874         2456


Q ss_pred             CccEEEEcC-CCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec--CCCCCHHHHHHhhCCCcEEEEec
Q psy15742        255 QGDVVFLSP-PWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL--PRTSDVFEIFHDSGKKGSFISLT  328 (342)
Q Consensus       255 ~~D~Ii~nP-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~l~~~~~~~~~i~~i~  328 (342)
                      .||+|++|+ |....+.   ..+.....-.  ....+..+.+.+.+++.+++  .......++...+...+.-.++.
T Consensus       117 ~~D~V~S~~~~~~~g~~---~~d~~~~~~~--~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~  188 (209)
T PRK11188        117 KVQVVMSDMAPNMSGTP---AVDIPRAMYL--VELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVR  188 (209)
T ss_pred             CCCEEecCCCCccCCCh---HHHHHHHHHH--HHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEE
Confidence            899999986 3221110   0111000000  01134445556666665554  44445555566655566555543

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.84  E-value=2.1e-08  Score=88.73  Aligned_cols=145  Identities=19%  Similarity=0.217  Sum_probs=87.9

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH-c------CC----CCcEEEEEccccccCCC--C
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASV-Y------GV----SHKIQFIQGDFFALAPS--L  254 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~-~------gl----~~~i~~~~~D~~~~~~~--~  254 (342)
                      +++.+||.+|||.|.....+|..|.+|+|+|+|+.+++.+.+.... .      +.    .+++++.++|++++.+.  +
T Consensus        36 ~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g  115 (218)
T PF05724_consen   36 KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG  115 (218)
T ss_dssp             STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred             CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence            4567999999999999999999999999999999999998432221 1      10    24689999999998644  3


Q ss_pred             CccEEEEcCCCCCCcccc---ccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEecccC
Q psy15742        255 QGDVVFLSPPWGGPEYAR---SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQ  331 (342)
Q Consensus       255 ~~D~Ii~nPP~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~~~  331 (342)
                      +||+|+=---+.-.....   ....+..++++  |+..++-... ......--=|-.....++..++.+++++..+...+
T Consensus       116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p--~g~~lLi~l~-~~~~~~~GPPf~v~~~ev~~l~~~~f~i~~l~~~~  192 (218)
T PF05724_consen  116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKP--GGRGLLITLE-YPQGEMEGPPFSVTEEEVRELFGPGFEIEELEEED  192 (218)
T ss_dssp             SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE--EEEEEEEEEE-S-CSCSSSSS----HHHHHHHHTTTEEEEEEEEEE
T ss_pred             CceEEEEecccccCCHHHHHHHHHHHHHHhCC--CCcEEEEEEE-cCCcCCCCcCCCCCHHHHHHHhcCCcEEEEEeccc
Confidence            799998643333221111   22233445544  3331111111 11100001133556788889999999999888877


Q ss_pred             CCCC
Q psy15742        332 MFSP  335 (342)
Q Consensus       332 ~fp~  335 (342)
                      ..+.
T Consensus       193 ~~~~  196 (218)
T PF05724_consen  193 SIEE  196 (218)
T ss_dssp             -TTT
T ss_pred             cccc
Confidence            6655

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.83  E-value=1.1e-08  Score=91.35  Aligned_cols=75  Identities=29%  Similarity=0.455  Sum_probs=64.9

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nP  263 (342)
                      ++.+|||+|||+|.++..++..+   .+++|+|+++.+++.+++++..++...++.++.+|+.+.+ +.+.||+|+++-
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~  129 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF  129 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence            46799999999999999998874   8999999999999999999987766567999999998865 345899999853

>PLN03075 nicotianamine synthase; Provisional

Probab=98.83  E-value=4.2e-08  Score=89.91  Aligned_cols=77  Identities=23%  Similarity=0.185  Sum_probs=62.2

Q ss_pred             CCCeEEeccCCCcHH-HHHHHH-h--CCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccccccCC-CCCccEEEEc
Q psy15742        189 ASDVVIDGFCGCGGN-TIQFAA-V--CQKVISIDIDPAKLRLAQHNASV-YGVSHKIQFIQGDFFALAP-SLQGDVVFLS  262 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~-~~~~a~-~--~~~v~gvD~s~~~l~~a~~n~~~-~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~n  262 (342)
                      ++++|+|+|||.|.+ ++.++. .  +.+++|+|+|+++++.|++++.. .++.++++|..+|+.+... ...||+|+++
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            478999999997744 444443 2  56899999999999999999964 7887789999999998653 3689999998


Q ss_pred             CCCC
Q psy15742        263 PPWG  266 (342)
Q Consensus       263 PP~~  266 (342)
                       --+
T Consensus       203 -ALi  205 (296)
T PLN03075        203 -ALV  205 (296)
T ss_pred             -ccc
Confidence             433

>TIGR00452 methyltransferase, putative

Probab=98.82  E-value=2.8e-08  Score=92.53  Aligned_cols=101  Identities=12%  Similarity=0.035  Sum_probs=70.4

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      +|++|||+|||+|.++..++..+ ..|+|+|.|+.++..++...+..+...++.+..+++.+++....||+|++.--..+
T Consensus       121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~H  200 (314)
T TIGR00452       121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYH  200 (314)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhhc
Confidence            57899999999999999988775 57999999999997765433332323478889999988876568999998754433


Q ss_pred             C-ccccccccccccCcCCCCchhhh
Q psy15742        268 P-EYARSSFSIDNIFPEQGGGRRLF  291 (342)
Q Consensus       268 ~-~~~~~~~~~~~~~~~~~~~~~~~  291 (342)
                      . +.......+.+.+++  ||..++
T Consensus       201 ~~dp~~~L~el~r~Lkp--GG~Lvl  223 (314)
T TIGR00452       201 RKSPLEHLKQLKHQLVI--KGELVL  223 (314)
T ss_pred             cCCHHHHHHHHHHhcCC--CCEEEE
Confidence            3 222233444555655  454443

Known examples to date are restricted to the proteobacteria.

>PRK01581 speE spermidine synthase; Validated

Probab=98.80  E-value=4.2e-08  Score=92.01  Aligned_cols=119  Identities=15%  Similarity=0.147  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHH--H---HcCC-CCcEEEEEcccc
Q psy15742        177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNA--S---VYGV-SHKIQFIQGDFF  248 (342)
Q Consensus       177 e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~--~---~~gl-~~~i~~~~~D~~  248 (342)
                      |.++.-.......+.+||++|||+|..+..+.+.  ..+|++||+|+++++.|+...  .   ...+ +++++++.+|+.
T Consensus       138 E~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~  217 (374)
T PRK01581        138 EALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAK  217 (374)
T ss_pred             HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHH
Confidence            4444544444556679999999999999888886  379999999999999999631  1   1122 358999999999


Q ss_pred             ccC--CCCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        249 ALA--PSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       249 ~~~--~~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      ++.  ...+||+|++|+|-....      ....+.    ....+..+.+.+.++++++.
T Consensus       218 ~fL~~~~~~YDVIIvDl~DP~~~------~~~~Ly----T~EFy~~~~~~LkPgGV~V~  266 (374)
T PRK01581        218 EFLSSPSSLYDVIIIDFPDPATE------LLSTLY----TSELFARIATFLTEDGAFVC  266 (374)
T ss_pred             HHHHhcCCCccEEEEcCCCcccc------chhhhh----HHHHHHHHHHhcCCCcEEEE
Confidence            876  235799999998732110      001111    11244456667777777766

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.79  E-value=2e-08  Score=92.14  Aligned_cols=80  Identities=20%  Similarity=0.282  Sum_probs=61.5

Q ss_pred             HHHHHHHHHhcC-CCCeEEeccCCCcHHHHHHHHh-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q psy15742        177 EKVAQHIASRCK-ASDVVIDGFCGCGGNTIQFAAV-----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  250 (342)
Q Consensus       177 e~~~~~i~~~~~-~~~~vLDlgcGtG~~~~~~a~~-----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~  250 (342)
                      +.+.+.+...++ ++.+|||+|||+|.++..+++.     +..++|+|+|+.+++.|+++.      .++.+..+|+.++
T Consensus        72 ~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l  145 (272)
T PRK11088         72 DAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL  145 (272)
T ss_pred             HHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC
Confidence            344444444433 4568999999999999998865     247999999999999998763      3688999999887


Q ss_pred             C-CCCCccEEEEc
Q psy15742        251 A-PSLQGDVVFLS  262 (342)
Q Consensus       251 ~-~~~~~D~Ii~n  262 (342)
                      + ++++||+|++.
T Consensus       146 p~~~~sfD~I~~~  158 (272)
T PRK11088        146 PFADQSLDAIIRI  158 (272)
T ss_pred             CCcCCceeEEEEe
Confidence            5 45689999973

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.79  E-value=3e-08  Score=87.00  Aligned_cols=84  Identities=18%  Similarity=0.285  Sum_probs=70.5

Q ss_pred             HHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccccCC--
Q psy15742        179 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ-GDFFALAP--  252 (342)
Q Consensus       179 ~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~-~D~~~~~~--  252 (342)
                      ++..+.+.. ++++||++|++.|..++++|..   ..+++++|.++++.+.|++|+++.|+.+++.++. +|+.+...  
T Consensus        50 ~L~~L~~~~-~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~  128 (219)
T COG4122          50 LLRLLARLS-GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL  128 (219)
T ss_pred             HHHHHHHhc-CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence            333444333 5679999999999999999986   4689999999999999999999999988899999 59888764  


Q ss_pred             -CCCccEEEEcC
Q psy15742        253 -SLQGDVVFLSP  263 (342)
Q Consensus       253 -~~~~D~Ii~nP  263 (342)
                       .++||+||+|-
T Consensus       129 ~~~~fDliFIDa  140 (219)
T COG4122         129 LDGSFDLVFIDA  140 (219)
T ss_pred             cCCCccEEEEeC
Confidence             37999999973

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.79  E-value=6.2e-08  Score=86.88  Aligned_cols=78  Identities=19%  Similarity=0.247  Sum_probs=64.3

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-C---CCCccEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P---SLQGDVV  259 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~---~~~~D~I  259 (342)
                      +.+|.+|+|.|.|+|.++..+++.   ..+|+.+|..++..+.|++|++.+|+.+++++.+.|+.+.- +   +..+|.|
T Consensus        38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav  117 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV  117 (247)
T ss_dssp             --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence            568999999999999999999986   46999999999999999999999999889999999996421 1   3579999


Q ss_pred             EEcCC
Q psy15742        260 FLSPP  264 (342)
Q Consensus       260 i~nPP  264 (342)
                      |+|-|
T Consensus       118 fLDlp  122 (247)
T PF08704_consen  118 FLDLP  122 (247)
T ss_dssp             EEESS
T ss_pred             EEeCC
Confidence            99998

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK06202 hypothetical protein; Provisional

Probab=98.79  E-value=2e-08  Score=89.88  Aligned_cols=78  Identities=26%  Similarity=0.220  Sum_probs=59.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVF  260 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~------~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii  260 (342)
                      .++.+|||+|||+|.++..+++.      +.+|+|+|+|+.|++.|+.+....+    +++...|..... ++.+||+|+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~~~fD~V~  134 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEGERFDVVT  134 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccCCCccEEE
Confidence            35679999999999999888752      2589999999999999998865443    455555444333 456899999


Q ss_pred             EcCCCCCCc
Q psy15742        261 LSPPWGGPE  269 (342)
Q Consensus       261 ~nPP~~~~~  269 (342)
                      ++-.++...
T Consensus       135 ~~~~lhh~~  143 (232)
T PRK06202        135 SNHFLHHLD  143 (232)
T ss_pred             ECCeeecCC
Confidence            998777653

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.78  E-value=5.4e-08  Score=91.40  Aligned_cols=76  Identities=21%  Similarity=0.218  Sum_probs=63.5

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  264 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP  264 (342)
                      +++.+|||+|||+|.++..+++.  +.+++++|.|+.+++.|+++...    .+++++.+|+.+.+ +++.||+|+++..
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~  187 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGS  187 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence            35779999999999999988875  57999999999999999998642    36789999998865 4568999999876


Q ss_pred             CCC
Q psy15742        265 WGG  267 (342)
Q Consensus       265 ~~~  267 (342)
                      .+.
T Consensus       188 L~~  190 (340)
T PLN02490        188 IEY  190 (340)
T ss_pred             hhh
Confidence            654

>TIGR03438 probable methyltransferase

Probab=98.78  E-value=7.3e-08  Score=89.66  Aligned_cols=70  Identities=17%  Similarity=0.125  Sum_probs=56.9

Q ss_pred             HHHHHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q psy15742        181 QHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  250 (342)
Q Consensus       181 ~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~  250 (342)
                      +.+.+.++++.+|||+|||||..+..+++.   +.+++|+|+|++|++.|++++......-++.++++|+.+.
T Consensus        55 ~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~  127 (301)
T TIGR03438        55 DEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP  127 (301)
T ss_pred             HHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence            444555667789999999999999999887   5799999999999999999987643212678899999874

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG1540|consensus

Probab=98.78  E-value=2e-08  Score=88.44  Aligned_cols=82  Identities=20%  Similarity=0.262  Sum_probs=70.0

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--C------CEEEEEeCCHHHHHHHHHHHHHcCCCCc--EEEEEccccccC-CCCCcc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--C------QKVISIDIDPAKLRLAQHNASVYGVSHK--IQFIQGDFFALA-PSLQGD  257 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~------~~v~gvD~s~~~l~~a~~n~~~~gl~~~--i~~~~~D~~~~~-~~~~~D  257 (342)
                      ++.++||++||||-++..+.+.  .      .+|+.+|+|+.|+..+++++.+.++.+.  +.|+++|+.+++ ++..||
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D  179 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD  179 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence            4789999999999999999875  3      6899999999999999999988777544  999999999998 677999


Q ss_pred             EEEEcCCCCCCcccc
Q psy15742        258 VVFLSPPWGGPEYAR  272 (342)
Q Consensus       258 ~Ii~nPP~~~~~~~~  272 (342)
                      ..++  .|+..+...
T Consensus       180 ~yTi--afGIRN~th  192 (296)
T KOG1540|consen  180 AYTI--AFGIRNVTH  192 (296)
T ss_pred             eEEE--ecceecCCC
Confidence            9998  677665443

>PRK04148 hypothetical protein; Provisional

Probab=98.77  E-value=5.1e-08  Score=78.80  Aligned_cols=67  Identities=16%  Similarity=0.232  Sum_probs=56.8

Q ss_pred             CCeEEeccCCCcH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEE-EcCC
Q psy15742        190 SDVVIDGFCGCGG-NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVF-LSPP  264 (342)
Q Consensus       190 ~~~vLDlgcGtG~-~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii-~nPP  264 (342)
                      +.+++|+|||+|. ++..+++.|..|+|+|+|+.+++.|+++        .++++.+|+++...+  ..+|+|. +.||
T Consensus        17 ~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~~a~liysirpp   87 (134)
T PRK04148         17 NKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYKNAKLIYSIRPP   87 (134)
T ss_pred             CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHhcCCEEEEeCCC
Confidence            5789999999996 8989998899999999999999888776        257999999987533  4799998 5677

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.77  E-value=2.9e-08  Score=89.21  Aligned_cols=86  Identities=17%  Similarity=0.205  Sum_probs=72.8

Q ss_pred             HHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--
Q psy15742        178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--  252 (342)
Q Consensus       178 ~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--  252 (342)
                      .++..+.+..+ ..+||++|+++|..++++|+.   +.+++++|.+++..+.|+.|++..|+.++++++.+|+.+.++  
T Consensus        69 ~lL~~l~~~~~-ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l  147 (247)
T PLN02589         69 QFLNMLLKLIN-AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQM  147 (247)
T ss_pred             HHHHHHHHHhC-CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHH
Confidence            55555555554 458999999999999999975   569999999999999999999999998899999999988652  


Q ss_pred             ------CCCccEEEEcCC
Q psy15742        253 ------SLQGDVVFLSPP  264 (342)
Q Consensus       253 ------~~~~D~Ii~nPP  264 (342)
                            .++||+||+|--
T Consensus       148 ~~~~~~~~~fD~iFiDad  165 (247)
T PLN02589        148 IEDGKYHGTFDFIFVDAD  165 (247)
T ss_pred             HhccccCCcccEEEecCC
Confidence                  258999999855

>PRK03612 spermidine synthase; Provisional

Probab=98.76  E-value=4.2e-08  Score=97.82  Aligned_cols=80  Identities=19%  Similarity=0.199  Sum_probs=64.8

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHHHHc-----CC-CCcEEEEEccccccC--CCCCc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-C-QKVISIDIDPAKLRLAQHNASVY-----GV-SHKIQFIQGDFFALA--PSLQG  256 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~-~~v~gvD~s~~~l~~a~~n~~~~-----gl-~~~i~~~~~D~~~~~--~~~~~  256 (342)
                      .+++++|||+|||+|..+.++++. . .+|+++|+|+++++.|++|....     .+ +++++++.+|+.++.  ...+|
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            345779999999999999999887 3 69999999999999999954211     22 248999999999865  23589


Q ss_pred             cEEEEcCCCC
Q psy15742        257 DVVFLSPPWG  266 (342)
Q Consensus       257 D~Ii~nPP~~  266 (342)
                      |+|++|+|..
T Consensus       375 DvIi~D~~~~  384 (521)
T PRK03612        375 DVIIVDLPDP  384 (521)
T ss_pred             CEEEEeCCCC
Confidence            9999999853

>KOG0820|consensus

Probab=98.76  E-value=6.3e-08  Score=86.00  Aligned_cols=82  Identities=24%  Similarity=0.316  Sum_probs=72.1

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      +++++.||++|.|||.++..+.+.|.+|+++|+|+.|+....+..+-...++..+++.||++.... ..||.+|+|-||.
T Consensus        56 ~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P~fd~cVsNlPyq  134 (315)
T KOG0820|consen   56 LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-PRFDGCVSNLPYQ  134 (315)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-cccceeeccCCcc
Confidence            567899999999999999999999999999999999999999888744445789999999998742 3699999999998


Q ss_pred             CCc
Q psy15742        267 GPE  269 (342)
Q Consensus       267 ~~~  269 (342)
                      ..+
T Consensus       135 ISS  137 (315)
T KOG0820|consen  135 ISS  137 (315)
T ss_pred             ccC
Confidence            764

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.76  E-value=5.1e-08  Score=87.23  Aligned_cols=78  Identities=27%  Similarity=0.196  Sum_probs=66.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~nPP~~  266 (342)
                      ++.+|||+|||+|.++..+++.+.+++++|+++.+++.|+.++...+.  +++++.+|+.+.+  ..+.||+|+++-.+.
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~  125 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEMLE  125 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence            477999999999999999998888999999999999999999987776  6788888888765  446899999976655


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       126 ~~  127 (233)
T PRK05134        126 HV  127 (233)
T ss_pred             cc
Confidence            43

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.75  E-value=4.1e-08  Score=74.62  Aligned_cols=75  Identities=28%  Similarity=0.437  Sum_probs=63.2

Q ss_pred             eEEeccCCCcHHHHHHHH-hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEEcCCCCC
Q psy15742        192 VVIDGFCGCGGNTIQFAA-VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGG  267 (342)
Q Consensus       192 ~vLDlgcGtG~~~~~~a~-~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~nPP~~~  267 (342)
                      +++|+|||+|.++..++. ...+++++|.++.+++.++++....+. .+++++.+|+.+..  ...+||+|++++|+..
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~   78 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELPPEADESFDVIISDPPLHH   78 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc-cceEEEEcChhhhccccCCceEEEEEccceee
Confidence            489999999999999988 478999999999999999865444433 47999999999876  3568999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.75  E-value=6.4e-08  Score=86.40  Aligned_cols=74  Identities=26%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             CCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      +.+|||+|||+|.++..+++.+  .+++|+|+++.+++.++.+..     +++.++.+|+.+.+ ++.+||+|+++-..+
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~  109 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ  109 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence            4689999999999999998873  568999999999999988764     36889999998876 556899999986655


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       110 ~~  111 (240)
T TIGR02072       110 WC  111 (240)
T ss_pred             hc
Confidence            43

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.73  E-value=1.6e-08  Score=87.74  Aligned_cols=82  Identities=26%  Similarity=0.316  Sum_probs=70.5

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccC---CCCCccEEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA---PSLQGDVVFL  261 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~---~~~~~D~Ii~  261 (342)
                      .+.|.+|||.|.|-|..++.+++.|+ +|+.+|.|+..++.|.-|--..++. ..++++.||+.+..   ++.+||+|+-
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH  211 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH  211 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence            45699999999999999999999976 9999999999999999887666653 36899999999875   4568999999


Q ss_pred             cCCCCCC
Q psy15742        262 SPPWGGP  268 (342)
Q Consensus       262 nPP~~~~  268 (342)
                      |||+-..
T Consensus       212 DPPRfS~  218 (287)
T COG2521         212 DPPRFSL  218 (287)
T ss_pred             CCCccch
Confidence            9996543

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.73  E-value=3e-07  Score=81.41  Aligned_cols=138  Identities=17%  Similarity=0.199  Sum_probs=86.7

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH------------HcCCCCcEEEEEccccccCC----
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS------------VYGVSHKIQFIQGDFFALAP----  252 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~------------~~gl~~~i~~~~~D~~~~~~----  252 (342)
                      ++.+||++|||.|..+.++|..|.+|+|+|+|+.+++.+.+...            ... ..+++++++|++++.+    
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~gD~f~l~~~~~~  121 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADIFNLPKIANN  121 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceec-cCceEEEEccCcCCCccccc
Confidence            46799999999999999999999999999999999999865210            011 1379999999999853    


Q ss_pred             CCCccEEEEcCCCCCCcccc---ccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEecc
Q psy15742        253 SLQGDVVFLSPPWGGPEYAR---SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTG  329 (342)
Q Consensus       253 ~~~~D~Ii~nPP~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~  329 (342)
                      .+.||+|+----+.......   ....+..++++  |+..++-... .... .--=|-.....++..+.++.+.+..+..
T Consensus       122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p--gg~llll~~~-~~~~-~~GPPf~v~~~e~~~lf~~~~~i~~l~~  197 (226)
T PRK13256        122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN--NTQILLLVME-HDKK-SQTPPYSVTQAELIKNFSAKIKFELIDS  197 (226)
T ss_pred             cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC--CcEEEEEEEe-cCCC-CCCCCCcCCHHHHHHhccCCceEEEeee
Confidence            24799976532232221110   22334455554  3322221111 1110 0011334567788888888888877765


Q ss_pred             cC
Q psy15742        330 RQ  331 (342)
Q Consensus       330 ~~  331 (342)
                      .+
T Consensus       198 ~~  199 (226)
T PRK13256        198 KQ  199 (226)
T ss_pred             cc
Confidence            43

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.72  E-value=6e-08  Score=88.83  Aligned_cols=80  Identities=20%  Similarity=0.230  Sum_probs=50.1

Q ss_pred             CCeEEeccCCCcHH-HHHHHH-hCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEcc----ccccC--CCCCccEEE
Q psy15742        190 SDVVIDGFCGCGGN-TIQFAA-VCQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGD----FFALA--PSLQGDVVF  260 (342)
Q Consensus       190 ~~~vLDlgcGtG~~-~~~~a~-~~~~v~gvD~s~~~l~~a~~n~~~~-gl~~~i~~~~~D----~~~~~--~~~~~D~Ii  260 (342)
                      .-++||+|||...+ .+-.++ .+++++|.|+|+.+++.|++|++.| ++.++|+++...    ++...  +...||+.+
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm  182 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM  182 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence            45799999998865 333333 3999999999999999999999999 998899998653    33222  234899999


Q ss_pred             EcCCCCCCc
Q psy15742        261 LSPPWGGPE  269 (342)
Q Consensus       261 ~nPP~~~~~  269 (342)
                      |||||....
T Consensus       183 CNPPFy~s~  191 (299)
T PF05971_consen  183 CNPPFYSSQ  191 (299)
T ss_dssp             E-----SS-
T ss_pred             cCCccccCh
Confidence            999999754

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK08317 hypothetical protein; Provisional

Probab=98.72  E-value=4.2e-08  Score=87.47  Aligned_cols=80  Identities=28%  Similarity=0.334  Sum_probs=64.7

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  262 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n  262 (342)
                      +.++.+|||+|||+|.++..++..   ..+++|+|+|+.+++.|+.+...  ...+++++.+|+.+.+ +...||+|+++
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~~~~~~D~v~~~   94 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLPFPDGSFDAVRSD   94 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCCCCCCCceEEEEe
Confidence            345789999999999999999876   36899999999999999998432  2247999999988754 45689999997


Q ss_pred             CCCCCC
Q psy15742        263 PPWGGP  268 (342)
Q Consensus       263 PP~~~~  268 (342)
                      -.+...
T Consensus        95 ~~~~~~  100 (241)
T PRK08317         95 RVLQHL  100 (241)
T ss_pred             chhhcc
Confidence            666543

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=1.7e-07  Score=88.99  Aligned_cols=93  Identities=25%  Similarity=0.381  Sum_probs=75.9

Q ss_pred             HHhcCCCCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CC-CC
Q psy15742        184 ASRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PS-LQ  255 (342)
Q Consensus       184 ~~~~~~~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~-~~  255 (342)
                      .-..++|.+|||++++.|+=+.++|..    +..|+++|.|+..++..++|+++.|+. ++..++.|.....   .. .+
T Consensus       151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~~~~  229 (355)
T COG0144         151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPGGEK  229 (355)
T ss_pred             HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccccccCc
Confidence            334567999999999999999999886    345799999999999999999999995 5888898877553   22 25


Q ss_pred             ccEEEEcCCCCCCccccccccc
Q psy15742        256 GDVVFLSPPWGGPEYARSSFSI  277 (342)
Q Consensus       256 ~D~Ii~nPP~~~~~~~~~~~~~  277 (342)
                      ||.|++|+|+++..-..+..++
T Consensus       230 fD~iLlDaPCSg~G~irr~Pd~  251 (355)
T COG0144         230 FDRILLDAPCSGTGVIRRDPDV  251 (355)
T ss_pred             CcEEEECCCCCCCcccccCccc
Confidence            9999999999998666544444

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.69  E-value=1.2e-07  Score=82.01  Aligned_cols=65  Identities=29%  Similarity=0.396  Sum_probs=51.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---------CCCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---------APSL  254 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---------~~~~  254 (342)
                      ++++.+|||+|||+|.++..+++.   ..+|+|+|+|+.+           +. .+++++++|+.+.         .+..
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~   97 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVGDD   97 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhCCC
Confidence            457889999999999999988875   3479999999854           12 3578899998753         2345


Q ss_pred             CccEEEEcC
Q psy15742        255 QGDVVFLSP  263 (342)
Q Consensus       255 ~~D~Ii~nP  263 (342)
                      .||+|++|+
T Consensus        98 ~~D~V~~~~  106 (188)
T TIGR00438        98 KVDVVMSDA  106 (188)
T ss_pred             CccEEEcCC
Confidence            799999985

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.68  E-value=1.2e-09  Score=84.23  Aligned_cols=74  Identities=22%  Similarity=0.239  Sum_probs=48.9

Q ss_pred             EeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---CCCCCccEEEEcCCCCCC
Q psy15742        194 IDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       194 LDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---~~~~~~D~Ii~nPP~~~~  268 (342)
                      ||+|||+|.++..++..  ..+++|+|+|+.|++.|++++...+.. +......+..+.   ....+||+|++.--++..
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence            79999999999999988  889999999999999999998887652 344444444433   333589999997665544

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.68  E-value=7.1e-08  Score=95.49  Aligned_cols=78  Identities=17%  Similarity=0.138  Sum_probs=63.5

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc--C-CCCCccEEEEcCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL--A-PSLQGDVVFLSPPW  265 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~--~-~~~~~D~Ii~nPP~  265 (342)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++..   ++..++++++++|+.+.  + +..+||+|+++.++
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l  113 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL  113 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence            467999999999999999999888999999999999876542   23335799999999642  2 45689999999987


Q ss_pred             CCCc
Q psy15742        266 GGPE  269 (342)
Q Consensus       266 ~~~~  269 (342)
                      +...
T Consensus       114 ~~l~  117 (475)
T PLN02336        114 MYLS  117 (475)
T ss_pred             HhCC
Confidence            7653

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.67  E-value=9e-08  Score=79.99  Aligned_cols=74  Identities=22%  Similarity=0.204  Sum_probs=53.9

Q ss_pred             HHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-CCCCCccEEEE
Q psy15742        183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-APSLQGDVVFL  261 (342)
Q Consensus       183 i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~-~~~~~~D~Ii~  261 (342)
                      +....+++.+|||+|||+|.++..+++.+.+++|+|+++.+++.         .  +......+.... .+.++||+|++
T Consensus        16 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~---------~--~~~~~~~~~~~~~~~~~~fD~i~~   84 (161)
T PF13489_consen   16 LLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK---------R--NVVFDNFDAQDPPFPDGSFDLIIC   84 (161)
T ss_dssp             HHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH---------T--TSEEEEEECHTHHCHSSSEEEEEE
T ss_pred             HhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh---------h--hhhhhhhhhhhhhccccchhhHhh
Confidence            33334568899999999999999998888899999999999988         1  233333322222 34569999999


Q ss_pred             cCCCCC
Q psy15742        262 SPPWGG  267 (342)
Q Consensus       262 nPP~~~  267 (342)
                      +--++.
T Consensus        85 ~~~l~~   90 (161)
T PF13489_consen   85 NDVLEH   90 (161)
T ss_dssp             ESSGGG
T ss_pred             HHHHhh
Confidence            644433

...

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.64  E-value=1.4e-07  Score=87.91  Aligned_cols=74  Identities=19%  Similarity=0.263  Sum_probs=63.1

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  262 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n  262 (342)
                      ++++.+|||+|||+|.+++.+++.  ..+++++|. +.+++.+++|+...|+.++++++.+|+++.... .+|+|++.
T Consensus       147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~  222 (306)
T TIGR02716       147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFC  222 (306)
T ss_pred             CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeE
Confidence            356789999999999999999987  578999997 789999999999999988999999999864322 47988763

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PLN02366 spermidine synthase

Probab=98.63  E-value=2.1e-07  Score=86.53  Aligned_cols=78  Identities=14%  Similarity=0.137  Sum_probs=65.0

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccccccCC---CCCccE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY--GV-SHKIQFIQGDFFALAP---SLQGDV  258 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~--gl-~~~i~~~~~D~~~~~~---~~~~D~  258 (342)
                      .+++++||++|||.|..+.++++.  ..+|+.+|+|+.+++.|++.+...  ++ +++++++.+|+.++..   .++||+
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            355789999999999999999987  468999999999999999988653  23 3589999999987652   458999


Q ss_pred             EEEcCC
Q psy15742        259 VFLSPP  264 (342)
Q Consensus       259 Ii~nPP  264 (342)
                      |++|.+
T Consensus       169 Ii~D~~  174 (308)
T PLN02366        169 IIVDSS  174 (308)
T ss_pred             EEEcCC
Confidence            999865

>KOG1499|consensus

Probab=98.63  E-value=1.1e-07  Score=87.63  Aligned_cols=73  Identities=21%  Similarity=0.311  Sum_probs=65.3

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  262 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n  262 (342)
                      .++.|||+|||||.+++.+|+. +.+|+|||.|.-+ +.|++.+..|++++.++++.+.+.+.. |..+.|+|++.
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSE  134 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSE  134 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeeh
Confidence            4789999999999999999998 6789999998755 999999999999888999999998874 45789999993

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=98.62  E-value=1.7e-07  Score=92.58  Aligned_cols=99  Identities=24%  Similarity=0.380  Sum_probs=79.8

Q ss_pred             CCHHHHHHHHHHhcC--CCCeEEeccCCCcHHHHHHHHh-C-----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy15742        174 VTPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV-C-----QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG  245 (342)
Q Consensus       174 ~~~e~~~~~i~~~~~--~~~~vLDlgcGtG~~~~~~a~~-~-----~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~  245 (342)
                      .||..+++.+...+.  +..+|+|+.||+|++.+.+++. +     ..++|.|++++....|+.|+-.+|++.++....+
T Consensus       169 yTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~  248 (489)
T COG0286         169 YTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHG  248 (489)
T ss_pred             CChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccc
Confidence            477788888887765  6779999999999999888775 2     5689999999999999999999999545677788


Q ss_pred             cccccC------CCCCccEEEEcCCCCCCcccc
Q psy15742        246 DFFALA------PSLQGDVVFLSPPWGGPEYAR  272 (342)
Q Consensus       246 D~~~~~------~~~~~D~Ii~nPP~~~~~~~~  272 (342)
                      |...-+      ....||+|++||||.+..+.+
T Consensus       249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~  281 (489)
T COG0286         249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGG  281 (489)
T ss_pred             ccccCCcccccCCccceeEEEeCCCCCcccccc
Confidence            776554      124799999999998655444

>TIGR00417 speE spermidine synthase

Probab=98.57  E-value=3.2e-07  Score=84.07  Aligned_cols=77  Identities=17%  Similarity=0.148  Sum_probs=63.4

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccccCC--CCCccEEEE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALAP--SLQGDVVFL  261 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~g--l-~~~i~~~~~D~~~~~~--~~~~D~Ii~  261 (342)
                      .+.+||++|||+|.++..+++.  ..+++++|+|+.+++.|++++...+  + .++++++.+|..++..  ..+||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            4569999999999999888876  4689999999999999999885542  1 2478999999887642  358999999


Q ss_pred             cCCC
Q psy15742        262 SPPW  265 (342)
Q Consensus       262 nPP~  265 (342)
                      |++.
T Consensus       152 D~~~  155 (270)
T TIGR00417       152 DSTD  155 (270)
T ss_pred             eCCC
Confidence            9884

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.57  E-value=1.8e-07  Score=82.71  Aligned_cols=73  Identities=29%  Similarity=0.372  Sum_probs=61.3

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  264 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP  264 (342)
                      ++.+|||+|||+|.++..+++. .  .+++|+|+++.+++.++.+..   ..++++++.+|+.+.+ +.+.||+|+++-.
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~  115 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFG  115 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence            4789999999999999999887 3  489999999999999999876   2347899999998875 3458999998543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG1500|consensus

Probab=98.55  E-value=2.3e-07  Score=84.58  Aligned_cols=75  Identities=19%  Similarity=0.249  Sum_probs=67.9

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  264 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP  264 (342)
                      .++.|+|+|||+|.++..+|.. +.+|++||-|+ |.+.|+.-++.|.+.++|.++.|-+.++.-..+.|+||+.|.
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPM  252 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPM  252 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccc
Confidence            4778999999999999999987 68999999885 999999999999998999999999999876668999999876

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.55  E-value=2e-07  Score=85.73  Aligned_cols=77  Identities=22%  Similarity=0.359  Sum_probs=64.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCC--CccEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSL--QGDVV  259 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~--~~D~I  259 (342)
                      .++..++|.+||.|+.+..+++..   .+|+|+|.|+.+++.|++++..   .++++++++|+.++.   +.+  ++|.|
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~vDgI   94 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKVDGI   94 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCccCEE
Confidence            467899999999999999999873   7899999999999999998865   258999999998764   222  79999


Q ss_pred             EEcCCCCC
Q psy15742        260 FLSPPWGG  267 (342)
Q Consensus       260 i~nPP~~~  267 (342)
                      ++|.=...
T Consensus        95 l~DLGvSs  102 (296)
T PRK00050         95 LLDLGVSS  102 (296)
T ss_pred             EECCCccc
Confidence            99865443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.54  E-value=3.2e-07  Score=83.54  Aligned_cols=139  Identities=14%  Similarity=0.112  Sum_probs=83.7

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE-cCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL-SPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~-nPP~~  266 (342)
                      .|++|||+|||.|..+..++.. +..|+|+|.+...+...+--.+..|....+..+-.-+.+++..+.||+|++ --=||
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLYH  194 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLYH  194 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehhc
Confidence            3889999999999999999987 567999999988776544433334443334444345556555678999985 45566


Q ss_pred             CCccccccccccccCcCCCCchhhhHhhhcc--------------CCCceeecCCCCCHHHHHHhhC-CCcEEEEecc
Q psy15742        267 GPEYARSSFSIDNIFPEQGGGRRLFQVARGI--------------SPNVGYYLPRTSDVFEIFHDSG-KKGSFISLTG  329 (342)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~l~~~~~-~~~~i~~i~~  329 (342)
                      ..+.......+...+..  ||..+++....-              .-..++|+|+..+.....+.++ ...+++.+++
T Consensus       195 rr~Pl~~L~~Lk~~L~~--gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~  270 (315)
T PF08003_consen  195 RRSPLDHLKQLKDSLRP--GGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSP  270 (315)
T ss_pred             cCCHHHHHHHHHHhhCC--CCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCcc
Confidence            66544444444455544  444444433211              2234666666655554444322 3344444443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.53  E-value=4.4e-07  Score=82.82  Aligned_cols=74  Identities=19%  Similarity=0.288  Sum_probs=56.1

Q ss_pred             CCCeEEeccCCCcH----HHHHHHHh-------CCEEEEEeCCHHHHHHHHHHHH----HcC------------------
Q psy15742        189 ASDVVIDGFCGCGG----NTIQFAAV-------CQKVISIDIDPAKLRLAQHNAS----VYG------------------  235 (342)
Q Consensus       189 ~~~~vLDlgcGtG~----~~~~~a~~-------~~~v~gvD~s~~~l~~a~~n~~----~~g------------------  235 (342)
                      ++.+|+|+|||||.    +++.+++.       ..+|+|+|+|+.|++.|++++-    ..+                  
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45699999999996    45555543       3589999999999999998641    011                  


Q ss_pred             ----CCCcEEEEEccccccCC-CCCccEEEEc
Q psy15742        236 ----VSHKIQFIQGDFFALAP-SLQGDVVFLS  262 (342)
Q Consensus       236 ----l~~~i~~~~~D~~~~~~-~~~~D~Ii~n  262 (342)
                          +..+++|.++|+.+.++ .++||+|+|.
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~cr  210 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCR  210 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEec
Confidence                11368999999998753 6789999993

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.51  E-value=6e-07  Score=78.11  Aligned_cols=109  Identities=21%  Similarity=0.306  Sum_probs=76.9

Q ss_pred             CeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEEEcCC
Q psy15742        191 DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSPP  264 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii~nPP  264 (342)
                      ..+||+|||.|.+.+.+|..  ...++|+|+....+..|...+...++ .|+.++++|+...+    ++++.|.|+++-|
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP   97 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP   97 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence            37999999999999999987  78999999999999999999999999 59999999998743    5678999998766


Q ss_pred             CCCCcccccccc-ccccCcCCCCchhhhHhhhccCCCceeecCCC
Q psy15742        265 WGGPEYARSSFS-IDNIFPEQGGGRRLFQVARGISPNVGYYLPRT  308 (342)
Q Consensus       265 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (342)
                          +.-.+... -.++...    ..+..+.+.+.+++.+.+-++
T Consensus        98 ----DPWpK~rH~krRl~~~----~fl~~~~~~L~~gG~l~~~TD  134 (195)
T PF02390_consen   98 ----DPWPKKRHHKRRLVNP----EFLELLARVLKPGGELYFATD  134 (195)
T ss_dssp             --------SGGGGGGSTTSH----HHHHHHHHHEEEEEEEEEEES
T ss_pred             ----CCCcccchhhhhcCCc----hHHHHHHHHcCCCCEEEEEeC
Confidence                43221111 1223321    144455566777777766333

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.50  E-value=6.9e-07  Score=87.12  Aligned_cols=75  Identities=20%  Similarity=0.243  Sum_probs=60.5

Q ss_pred             CCeEEeccCCCcHHHHHHHHhC------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVC------QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~------~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      +..|+|+|||+|.++..+++.+      .+|++||.|+.++...++.+..++..++|+++++|+.++....++|+||+-.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl  266 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL  266 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence            4689999999999998777653      7999999999999888888788999889999999999997666999999965


Q ss_pred             C
Q psy15742        264 P  264 (342)
Q Consensus       264 P  264 (342)
                      -
T Consensus       267 L  267 (448)
T PF05185_consen  267 L  267 (448)
T ss_dssp             -
T ss_pred             c
Confidence            4

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PLN02823 spermine synthase

Probab=98.48  E-value=1.2e-06  Score=82.41  Aligned_cols=78  Identities=18%  Similarity=0.152  Sum_probs=65.3

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccccCC--CCCccEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALAP--SLQGDVV  259 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~g--l-~~~i~~~~~D~~~~~~--~~~~D~I  259 (342)
                      .+...+||.+|+|.|..+.++.+.  ..+|+.||+|+..++.|++++..++  + +++++++.+|+.+++.  ..+||+|
T Consensus       101 ~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI  180 (336)
T PLN02823        101 HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI  180 (336)
T ss_pred             CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence            345679999999999999998885  5789999999999999999986542  2 3689999999999863  3589999


Q ss_pred             EEcCC
Q psy15742        260 FLSPP  264 (342)
Q Consensus       260 i~nPP  264 (342)
                      ++|.+
T Consensus       181 i~D~~  185 (336)
T PLN02823        181 IGDLA  185 (336)
T ss_pred             EecCC
Confidence            99964

>PTZ00146 fibrillarin; Provisional

Probab=98.47  E-value=7.5e-07  Score=81.46  Aligned_cols=75  Identities=16%  Similarity=0.011  Sum_probs=57.6

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVV  259 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~I  259 (342)
                      ++++.+|||+|||+|.++..++..   ...|+++|+++.+.+.....++..   .++.++.+|+....    ....+|+|
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV  206 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVI  206 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEE
Confidence            467899999999999999999987   258999999998665544443322   37889999986431    23479999


Q ss_pred             EEcCC
Q psy15742        260 FLSPP  264 (342)
Q Consensus       260 i~nPP  264 (342)
                      ++|-+
T Consensus       207 ~~Dva  211 (293)
T PTZ00146        207 FADVA  211 (293)
T ss_pred             EEeCC
Confidence            99875

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.45  E-value=6.6e-07  Score=81.63  Aligned_cols=76  Identities=22%  Similarity=0.277  Sum_probs=65.0

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC----CccEEEEcCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL----QGDVVFLSPP  264 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~----~~D~Ii~nPP  264 (342)
                      ++..|+|+|+|+|.++..+++.+.+++++|+|+..++..++...   ..++++++.+|+.++....    ....|++|.|
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlP  106 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLP  106 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGGHCSSSEEEEEEEET
T ss_pred             CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHHhhcCCceEEEEEec
Confidence            58899999999999999999999999999999999999998765   2358999999999986332    6679999999


Q ss_pred             CCC
Q psy15742        265 WGG  267 (342)
Q Consensus       265 ~~~  267 (342)
                      |..
T Consensus       107 y~i  109 (262)
T PF00398_consen  107 YNI  109 (262)
T ss_dssp             GTG
T ss_pred             ccc
Confidence            844

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.45  E-value=2.6e-07  Score=77.73  Aligned_cols=69  Identities=30%  Similarity=0.340  Sum_probs=61.8

Q ss_pred             CeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742        191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  261 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~  261 (342)
                      +.+.|+|+|+|.++..+|..+.+|++++.+|...+.|.+|+..+|. .+++++.+|+.+..- ...|+|+|
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f-e~ADvvic  102 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF-ENADVVIC  102 (252)
T ss_pred             hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc-cccceeHH
Confidence            5899999999999999999999999999999999999999988888 589999999988743 35677776

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.43  E-value=8.9e-07  Score=75.60  Aligned_cols=77  Identities=18%  Similarity=0.179  Sum_probs=52.6

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccccccC-----CCCCccE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--VSHKIQFIQGDFFALA-----PSLQGDV  258 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~g--l~~~i~~~~~D~~~~~-----~~~~~D~  258 (342)
                      .++.+|||+|||+|..++.+++.  +.+|+..|.++ .++.++.|++.|+  ..+++++...|+.+..     ...+||+
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            35789999999999999999998  78999999999 9999999999988  5567888888775421     3458999


Q ss_pred             EEE-cCCC
Q psy15742        259 VFL-SPPW  265 (342)
Q Consensus       259 Ii~-nPP~  265 (342)
                      |+. |-=|
T Consensus       123 IlasDv~Y  130 (173)
T PF10294_consen  123 ILASDVLY  130 (173)
T ss_dssp             EEEES--S
T ss_pred             EEEecccc
Confidence            985 4444

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.42  E-value=8.2e-07  Score=81.79  Aligned_cols=90  Identities=26%  Similarity=0.365  Sum_probs=74.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVF  260 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii  260 (342)
                      ..+|..|||++++.|+-+.++|..   ...++++|+++..+...+.|+++.|+. ++.....|.....   ....||.|+
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~fd~Vl  161 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKFDRVL  161 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccccccchhh
Confidence            456889999999999999999886   369999999999999999999999984 7888888988763   334699999


Q ss_pred             EcCCCCCCccccccccc
Q psy15742        261 LSPPWGGPEYARSSFSI  277 (342)
Q Consensus       261 ~nPP~~~~~~~~~~~~~  277 (342)
                      +|+|+.+.....+..++
T Consensus       162 vDaPCSg~G~i~r~p~~  178 (283)
T PF01189_consen  162 VDAPCSGLGTIRRNPDI  178 (283)
T ss_dssp             EECSCCCGGGTTTCTTH
T ss_pred             cCCCccchhhhhhccch
Confidence            99999997655544443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG1541|consensus

Probab=98.42  E-value=6.2e-07  Score=77.42  Aligned_cols=66  Identities=23%  Similarity=0.209  Sum_probs=54.2

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFL  261 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~  261 (342)
                      +.-|||+|||||..+..+...|+..+|+|+|+.|++.|.+.-    +  .-.++.+|+-+-+  ..+.||.+|+
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e----~--egdlil~DMG~GlpfrpGtFDg~IS  118 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERE----L--EGDLILCDMGEGLPFRPGTFDGVIS  118 (270)
T ss_pred             CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhh----h--hcCeeeeecCCCCCCCCCccceEEE
Confidence            568999999999999888888999999999999999999722    1  1257888887654  4578998886

>KOG1663|consensus

Probab=98.33  E-value=3.5e-06  Score=73.52  Aligned_cols=85  Identities=21%  Similarity=0.254  Sum_probs=71.3

Q ss_pred             HHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---
Q psy15742        178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---  251 (342)
Q Consensus       178 ~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---  251 (342)
                      ++++.+.+..+ ++++||+|..||..++..|..   +.+|+++|+++.+.+++.+-.+..|+.++++++++++.+.+   
T Consensus        63 ~fl~~li~~~~-ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l  141 (237)
T KOG1663|consen   63 QFLQMLIRLLN-AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL  141 (237)
T ss_pred             HHHHHHHHHhC-CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence            33444444444 569999999999999999886   78999999999999999999999999999999999988764   


Q ss_pred             ----CCCCccEEEEcC
Q psy15742        252 ----PSLQGDVVFLSP  263 (342)
Q Consensus       252 ----~~~~~D~Ii~nP  263 (342)
                          +.+.||++|.|-
T Consensus       142 ~~~~~~~tfDfaFvDa  157 (237)
T KOG1663|consen  142 LADGESGTFDFAFVDA  157 (237)
T ss_pred             HhcCCCCceeEEEEcc
Confidence                346899999974

>KOG4300|consensus

Probab=98.29  E-value=1.9e-06  Score=73.81  Aligned_cols=70  Identities=20%  Similarity=0.196  Sum_probs=60.2

Q ss_pred             CeEEeccCCCcHHHHHHHH-hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEE-EEEccccccC--CCCCccEEEE
Q psy15742        191 DVVIDGFCGCGGNTIQFAA-VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQ-FIQGDFFALA--PSLQGDVVFL  261 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~-~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~-~~~~D~~~~~--~~~~~D~Ii~  261 (342)
                      ..||++|||||..--+.-. .+.+||++|.++.|-++|.+.++.+.- .++. |+.++..+++  +++++|+|++
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtVV~  151 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTVVC  151 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeEEE
Confidence            3689999999998766653 378999999999999999999988743 4676 9999999987  7889999998

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.21  E-value=8.2e-06  Score=72.42  Aligned_cols=107  Identities=18%  Similarity=0.233  Sum_probs=81.8

Q ss_pred             CeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEEEcCC
Q psy15742        191 DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSPP  264 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii~nPP  264 (342)
                      ..+||||||.|.+.+.+|+.  ...++|||+....+..|...+...++. |+.++++|+..++    ++++.|-|+++-|
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP  128 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP  128 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence            47999999999999999998  678999999999999999999999995 8999999998764    4458999988766


Q ss_pred             CCCCcccccccc-ccccC-cCCCCchhhhHhhhccCCCceeecCC
Q psy15742        265 WGGPEYARSSFS-IDNIF-PEQGGGRRLFQVARGISPNVGYYLPR  307 (342)
Q Consensus       265 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (342)
                          +.-..... -.++. +.     .+-.+.+.+.+++.+.+-+
T Consensus       129 ----DPWpKkRH~KRRl~~~~-----fl~~~a~~Lk~gG~l~~aT  164 (227)
T COG0220         129 ----DPWPKKRHHKRRLTQPE-----FLKLYARKLKPGGVLHFAT  164 (227)
T ss_pred             ----CCCCCccccccccCCHH-----HHHHHHHHccCCCEEEEEe
Confidence                33221111 12233 32     5556667777877777733

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.19  E-value=2.5e-06  Score=72.45  Aligned_cols=70  Identities=27%  Similarity=0.326  Sum_probs=63.1

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  262 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n  262 (342)
                      .|++|||+|+|+|..++.+++. +..|++.|+++......+.|++.||+  .+.+...|...  .+..||+++..
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--~~~~~Dl~Lag  149 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--SPPAFDLLLAG  149 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--CCcceeEEEee
Confidence            4889999999999999999997 67899999999999999999999998  79999999987  45579999863

>KOG3010|consensus

Probab=98.17  E-value=7.5e-07  Score=78.04  Aligned_cols=92  Identities=15%  Similarity=0.108  Sum_probs=62.9

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~~~  268 (342)
                      -..++|+|||+|-.++.+|....+|+|+|+|++|++.|++.-...-..........+..++. .+.+.|+|++---+|-.
T Consensus        34 h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF  113 (261)
T KOG3010|consen   34 HRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF  113 (261)
T ss_pred             cceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence            34799999999988888888899999999999999998875433222113344444555554 35689999997666655


Q ss_pred             ccccccccccccC
Q psy15742        269 EYARSSFSIDNIF  281 (342)
Q Consensus       269 ~~~~~~~~~~~~~  281 (342)
                      +..+....+.+++
T Consensus       114 dle~fy~~~~rvL  126 (261)
T KOG3010|consen  114 DLERFYKEAYRVL  126 (261)
T ss_pred             chHHHHHHHHHHc
Confidence            4433223333444

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=98.13  E-value=3.2e-05  Score=66.73  Aligned_cols=80  Identities=25%  Similarity=0.388  Sum_probs=52.5

Q ss_pred             CCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHH--------------------------------
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASV--------------------------------  233 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~--------------------------------  233 (342)
                      +-+++|++||+|.+.--+...    -..|+|.|+|+.+++.|++|+..                                
T Consensus        52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA  131 (246)
T PF11599_consen   52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA  131 (246)
T ss_dssp             -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            458999999999987766543    35799999999999999999861                                


Q ss_pred             ---------cCCCCcEEEEEccccccC------CCCCccEEEEcCCCCCCc
Q psy15742        234 ---------YGVSHKIQFIQGDFFALA------PSLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       234 ---------~gl~~~i~~~~~D~~~~~------~~~~~D~Ii~nPP~~~~~  269 (342)
                               .|-.....+.++|++++.      .....|+|+.|-||+..+
T Consensus       132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t  182 (246)
T PF11599_consen  132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMT  182 (246)
T ss_dssp             HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSS
T ss_pred             HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccc
Confidence                     111224778889998852      233579999999999875

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG2915|consensus

Probab=98.13  E-value=2.4e-05  Score=69.82  Aligned_cols=78  Identities=19%  Similarity=0.319  Sum_probs=70.3

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVF  260 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii  260 (342)
                      +.||.+|++-|+|+|+++.++++.   -.+++..|......+.|++-.+.+|+.+++++++-|+...-   .+..+|.|+
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF  182 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVF  182 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEE
Confidence            568999999999999999999987   37899999999999999999999999999999999987642   356899999


Q ss_pred             EcCC
Q psy15742        261 LSPP  264 (342)
Q Consensus       261 ~nPP  264 (342)
                      +|-|
T Consensus       183 LDlP  186 (314)
T KOG2915|consen  183 LDLP  186 (314)
T ss_pred             EcCC
Confidence            9988

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.13  E-value=1.4e-05  Score=72.17  Aligned_cols=108  Identities=17%  Similarity=0.168  Sum_probs=77.9

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEEEccccccCC--CC-CccE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGV---SHKIQFIQGDFFALAP--SL-QGDV  258 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl---~~~i~~~~~D~~~~~~--~~-~~D~  258 (342)
                      .+...+||=+|.|.|+.+.++.+..  .+|+.||+|+..++.|++-+.....   +++++++.+|+..++.  .. +||+
T Consensus        74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv  153 (246)
T PF01564_consen   74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV  153 (246)
T ss_dssp             SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred             CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence            3457899999999999999998873  7999999999999999998765422   3589999999998762  23 7999


Q ss_pred             EEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        259 VFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       259 Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      |++|.+-. ..     .... +.    ....+..+.+.+++++++.+
T Consensus       154 Ii~D~~dp-~~-----~~~~-l~----t~ef~~~~~~~L~~~Gv~v~  189 (246)
T PF01564_consen  154 IIVDLTDP-DG-----PAPN-LF----TREFYQLCKRRLKPDGVLVL  189 (246)
T ss_dssp             EEEESSST-TS-----CGGG-GS----SHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEeCCCC-CC-----Cccc-cc----CHHHHHHHHhhcCCCcEEEE
Confidence            99998731 11     1111 11    12255566778888888876

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.10  E-value=5.3e-05  Score=65.85  Aligned_cols=80  Identities=19%  Similarity=0.162  Sum_probs=69.8

Q ss_pred             HHHHhcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccE
Q psy15742        182 HIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDV  258 (342)
Q Consensus       182 ~i~~~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~  258 (342)
                      .+...++.+.++.|+||--|.+..++.+.  ...++++|+++..++.|.+|+..+++.++++...+|.+.... +..+|+
T Consensus         9 ~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~   88 (226)
T COG2384           9 TVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDV   88 (226)
T ss_pred             HHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCE
Confidence            34455566778999999999999999987  678999999999999999999999999999999999987664 347999


Q ss_pred             EEE
Q psy15742        259 VFL  261 (342)
Q Consensus       259 Ii~  261 (342)
                      |++
T Consensus        89 ivI   91 (226)
T COG2384          89 IVI   91 (226)
T ss_pred             EEE
Confidence            988

>KOG1661|consensus

Probab=98.09  E-value=1.7e-05  Score=68.18  Aligned_cols=85  Identities=15%  Similarity=0.116  Sum_probs=69.4

Q ss_pred             HHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcC--------C-CCcEEEEE
Q psy15742        178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYG--------V-SHKIQFIQ  244 (342)
Q Consensus       178 ~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~g--------l-~~~i~~~~  244 (342)
                      .+++.+...+.+|.++||+|+|||.++..++..    |..+.|||.-++.++.+++|+...-        + ..+..++.
T Consensus        71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv  150 (237)
T KOG1661|consen   71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV  150 (237)
T ss_pred             HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence            444666667788999999999999999999865    4556999999999999999997653        1 24688999


Q ss_pred             ccccccC-CCCCccEEEEc
Q psy15742        245 GDFFALA-PSLQGDVVFLS  262 (342)
Q Consensus       245 ~D~~~~~-~~~~~D~Ii~n  262 (342)
                      +|..... +..+||.|.+-
T Consensus       151 GDgr~g~~e~a~YDaIhvG  169 (237)
T KOG1661|consen  151 GDGRKGYAEQAPYDAIHVG  169 (237)
T ss_pred             CCccccCCccCCcceEEEc
Confidence            9998865 45699999984

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=98.08  E-value=1.2e-05  Score=71.12  Aligned_cols=79  Identities=23%  Similarity=0.326  Sum_probs=49.7

Q ss_pred             CeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc---CC-----CCcEEEEEccccccCC--CCCccEEE
Q psy15742        191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY---GV-----SHKIQFIQGDFFALAP--SLQGDVVF  260 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~---gl-----~~~i~~~~~D~~~~~~--~~~~D~Ii  260 (342)
                      .+|||..+|.|..++-+|..|.+|+++|.||-.....++-++.+   .-     ..+++++++|..+++.  ..+||+|.
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY  156 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY  156 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred             CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence            48999999999999999988999999999998776665544332   11     1379999999999864  46899999


Q ss_pred             EcCCCCCCc
Q psy15742        261 LSPPWGGPE  269 (342)
Q Consensus       261 ~nPP~~~~~  269 (342)
                      +||.|....
T Consensus       157 ~DPMFp~~~  165 (234)
T PF04445_consen  157 FDPMFPERK  165 (234)
T ss_dssp             E--S-----
T ss_pred             ECCCCCCcc
Confidence            999998753

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.06  E-value=2e-05  Score=64.97  Aligned_cols=74  Identities=27%  Similarity=0.296  Sum_probs=59.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHH-----h-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccccccCCCCCccEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAA-----V-CQKVISIDIDPAKLRLAQHNASVYG--VSHKIQFIQGDFFALAPSLQGDVV  259 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~-----~-~~~v~gvD~s~~~l~~a~~n~~~~g--l~~~i~~~~~D~~~~~~~~~~D~I  259 (342)
                      .+..+|+|+|||.|.++..++.     . +.+|+|+|.++..++.|....+..+  ...+.++..++..+.......+++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL  103 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence            3577999999999999999998     4 7899999999999999999998887  445677777777655444455555


Q ss_pred             EE
Q psy15742        260 FL  261 (342)
Q Consensus       260 i~  261 (342)
                      +.
T Consensus       104 vg  105 (141)
T PF13679_consen  104 VG  105 (141)
T ss_pred             EE
Confidence            55

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.04  E-value=8.1e-06  Score=72.58  Aligned_cols=38  Identities=21%  Similarity=0.208  Sum_probs=34.4

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHH
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRL  226 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~  226 (342)
                      ++.++||+|||||.++..+++. +.+|+|+|+++.++..
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            4779999999999999999998 5789999999988865

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.03  E-value=1.9e-05  Score=69.10  Aligned_cols=69  Identities=26%  Similarity=0.327  Sum_probs=56.6

Q ss_pred             EEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCC-ccEEEE
Q psy15742        193 VIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ-GDVVFL  261 (342)
Q Consensus       193 vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~-~D~Ii~  261 (342)
                      |.|+||--|.+.+++.+.+  .+++++|+++..++.|++|++.+|+.++++++.+|.++..+.+. .|.|++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivI   72 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVI   72 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEE
Confidence            6899999999999999985  58999999999999999999999998899999999988765554 888887

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG2899|consensus

Probab=98.01  E-value=2.1e-05  Score=69.07  Aligned_cols=45  Identities=22%  Similarity=0.344  Sum_probs=41.1

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY  234 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~  234 (342)
                      +..+||+||-+|.+++.+|+.  ...+.|+|||+..++.|++|++..
T Consensus        59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~  105 (288)
T KOG2899|consen   59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP  105 (288)
T ss_pred             cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence            678999999999999999997  678999999999999999998643

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.00  E-value=3e-05  Score=67.86  Aligned_cols=77  Identities=32%  Similarity=0.445  Sum_probs=51.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHH-------HcCC-CCcEEEEEccccccCC----
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNAS-------VYGV-SHKIQFIQGDFFALAP----  252 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~-------~~gl-~~~i~~~~~D~~~~~~----  252 (342)
                      +.+++.++|+|||.|...+.+|..  ..+++|||+.+...+.|+.+.+       ..|. ..++++.++|+.+...    
T Consensus        40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~  119 (205)
T PF08123_consen   40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI  119 (205)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence            346889999999999999988876  5569999999999988876543       3344 2478899999876431    


Q ss_pred             CCCccEEEEcC
Q psy15742        253 SLQGDVVFLSP  263 (342)
Q Consensus       253 ~~~~D~Ii~nP  263 (342)
                      -...|+|++|-
T Consensus       120 ~s~AdvVf~Nn  130 (205)
T PF08123_consen  120 WSDADVVFVNN  130 (205)
T ss_dssp             GHC-SEEEE--
T ss_pred             hcCCCEEEEec
Confidence            12579999973

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.97  E-value=5.7e-06  Score=71.98  Aligned_cols=131  Identities=14%  Similarity=0.160  Sum_probs=78.4

Q ss_pred             CeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEc--CCC
Q psy15742        191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLS--PPW  265 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~n--PP~  265 (342)
                      .++||+|||||..+..+-....+.+|||+|..|++.|.++    |+-  -++.++|+..+.   ...+||+|++-  -||
T Consensus       127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eK----g~Y--D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Y  200 (287)
T COG4976         127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEK----GLY--DTLYVAEAVLFLEDLTQERFDLIVAADVLPY  200 (287)
T ss_pred             ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhc----cch--HHHHHHHHHHHhhhccCCcccchhhhhHHHh
Confidence            6899999999999999988889999999999999998875    331  245566655444   34589999863  344


Q ss_pred             CCCcccc-ccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHH----HH-HHhhCCCcEEEEecccCC
Q psy15742        266 GGPEYAR-SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVF----EI-FHDSGKKGSFISLTGRQM  332 (342)
Q Consensus       266 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~l-~~~~~~~~~i~~i~~~~~  332 (342)
                      -|.  .. ........+.+  ||+..++.-..-..+. +.+-++.+..    -+ ..+...|+.++.+....+
T Consensus       201 lG~--Le~~~~~aa~~L~~--gGlfaFSvE~l~~~~~-f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tti  268 (287)
T COG4976         201 LGA--LEGLFAGAAGLLAP--GGLFAFSVETLPDDGG-FVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTI  268 (287)
T ss_pred             hcc--hhhHHHHHHHhcCC--CceEEEEecccCCCCC-eecchhhhhccchHHHHHHHHhcCceEEEeecccc
Confidence            432  11 11222233433  5555444433333333 3331111111    11 123457888888776554

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.97  E-value=1.1e-05  Score=70.12  Aligned_cols=80  Identities=15%  Similarity=0.135  Sum_probs=58.1

Q ss_pred             CCCeEEeccCCCcHHHHHH--HHhCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccccc-cC-----CCCCccEE
Q psy15742        189 ASDVVIDGFCGCGGNTIQF--AAVCQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGDFFA-LA-----PSLQGDVV  259 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~--a~~~~~v~gvD~s~~~l~~a~~n~~~~-gl~~~i~~~~~D~~~-~~-----~~~~~D~I  259 (342)
                      ++-++||+|.|.-.+=-.+  ...|.+.+|.|+|+.++..|+.++..| ++...++++...-.+ +.     .+..||++
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t  157 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT  157 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence            4557888876654432112  234899999999999999999999998 787677776543222 21     24589999


Q ss_pred             EEcCCCCCC
Q psy15742        260 FLSPPWGGP  268 (342)
Q Consensus       260 i~nPP~~~~  268 (342)
                      +|||||+..
T Consensus       158 lCNPPFh~s  166 (292)
T COG3129         158 LCNPPFHDS  166 (292)
T ss_pred             ecCCCcchh
Confidence            999999975

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.94  E-value=2.8e-05  Score=73.01  Aligned_cols=78  Identities=23%  Similarity=0.320  Sum_probs=54.5

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHc---------CCCCcEEEEEcccccc------CC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVY---------GVSHKIQFIQGDFFAL------AP  252 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~---------gl~~~i~~~~~D~~~~------~~  252 (342)
                      ++.+|||+|||-|+...-+... ...++|+|++...++.|+++.+..         ...-...++.+|++..      .+
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            6789999999999988777766 679999999999999999998321         1112567899998753      12


Q ss_pred             C-CCccEEEEcCCCC
Q psy15742        253 S-LQGDVVFLSPPWG  266 (342)
Q Consensus       253 ~-~~~D~Ii~nPP~~  266 (342)
                      . ..||+|-|--..|
T Consensus       142 ~~~~FDvVScQFalH  156 (331)
T PF03291_consen  142 RSRKFDVVSCQFALH  156 (331)
T ss_dssp             TTS-EEEEEEES-GG
T ss_pred             cCCCcceeehHHHHH
Confidence            2 4899999954443

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.92  E-value=3.5e-05  Score=63.27  Aligned_cols=58  Identities=19%  Similarity=0.275  Sum_probs=50.9

Q ss_pred             eEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q psy15742        192 VVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  250 (342)
Q Consensus       192 ~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~  250 (342)
                      +++|+|||+|..+..+++.+  .+++++|.++.+.+.+++|++.++++ ++++++..+.+-
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~~   60 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGDR   60 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeCC
Confidence            48999999999999999874  47999999999999999999999884 688888877653

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.92  E-value=0.0001  Score=73.37  Aligned_cols=112  Identities=13%  Similarity=0.119  Sum_probs=82.1

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---CCCCCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---~~~~~~D~Ii~nP  263 (342)
                      .+..+||+|||.|.+.+.+|..  ...++|+|+....+..|...+...++ .|+.++++|+..+   .+++++|.|+++-
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~F  425 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILF  425 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence            3568999999999999999987  67899999999999999999888898 4899999887533   3667899999987


Q ss_pred             CCCCCccccccc-cccccCcCCCCchhhhHhhhccCCCceeecCCCC
Q psy15742        264 PWGGPEYARSSF-SIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTS  309 (342)
Q Consensus       264 P~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (342)
                      |    +.-.+.. .-.++...    ..+....+.+.+++.+.+-++.
T Consensus       426 P----DPWpKkrh~krRl~~~----~fl~~~~~~Lk~gG~i~~~TD~  464 (506)
T PRK01544        426 P----DPWIKNKQKKKRIFNK----ERLKILQDKLKDNGNLVFASDI  464 (506)
T ss_pred             C----CCCCCCCCccccccCH----HHHHHHHHhcCCCCEEEEEcCC
Confidence            7    4333111 12233321    1455566677777777764443

>PRK11524 putative methyltransferase; Provisional

Probab=97.92  E-value=3.5e-05  Score=71.10  Aligned_cols=58  Identities=24%  Similarity=0.381  Sum_probs=50.3

Q ss_pred             HHHHHHHHHH-hcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH
Q psy15742        176 PEKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASV  233 (342)
Q Consensus       176 ~e~~~~~i~~-~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~  233 (342)
                      |..+++.+.. ...+|+.|||+|||+|+.++.+.+.+.+.+|+|+++++++.|++++..
T Consensus       194 P~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        194 PEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             hHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            4566666554 457899999999999999999999999999999999999999999853

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.92  E-value=8.8e-05  Score=65.63  Aligned_cols=77  Identities=19%  Similarity=0.213  Sum_probs=48.1

Q ss_pred             CCCeEEeccCCCcHHHHHHHH--hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC---CCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS---LQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~--~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~---~~~D~Ii~nP  263 (342)
                      .|++||=+|=.-- .++.+|.  ...+|+-+|+|+..++..++.++..|+  +++.++.|+.+.+|.   ++||++++||
T Consensus        44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--~i~~~~~DlR~~LP~~~~~~fD~f~TDP  120 (243)
T PF01861_consen   44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--PIEAVHYDLRDPLPEELRGKFDVFFTDP  120 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEEEE--
T ss_pred             cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--ceEEEEecccccCCHHHhcCCCEEEeCC
Confidence            3788988874433 3444444  378999999999999999999999999  599999999988754   5899999999


Q ss_pred             CCCCC
Q psy15742        264 PWGGP  268 (342)
Q Consensus       264 P~~~~  268 (342)
                      ||...
T Consensus       121 PyT~~  125 (243)
T PF01861_consen  121 PYTPE  125 (243)
T ss_dssp             -SSHH
T ss_pred             CCCHH
Confidence            99753

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.91  E-value=3.5e-05  Score=71.68  Aligned_cols=70  Identities=17%  Similarity=0.143  Sum_probs=55.9

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEcCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPP  264 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nPP  264 (342)
                      +.+|.+++|+||++|+++..+.+.|.+|+|||..+-     ..++..   +++++...+|.+.+.+ ...+|+++||--
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l-----~~~L~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDmv  279 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPM-----AQSLMD---TGQVEHLRADGFKFRPPRKNVDWLVCDMV  279 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhc-----CHhhhC---CCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence            457899999999999999999999999999996541     122222   2489999999988875 668999999854

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.86  E-value=5.3e-05  Score=66.88  Aligned_cols=54  Identities=22%  Similarity=0.488  Sum_probs=41.3

Q ss_pred             HHHHHHHHH-HhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Q psy15742        176 PEKVAQHIA-SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH  229 (342)
Q Consensus       176 ~e~~~~~i~-~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~  229 (342)
                      |..+++.+. ...++|+.|||++||+|+.++++.+.+.+.+|+|+++.+++.|++
T Consensus       177 P~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  177 PVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            344444444 455789999999999999999999999999999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.85  E-value=0.00011  Score=68.03  Aligned_cols=74  Identities=22%  Similarity=0.356  Sum_probs=62.5

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------CCCCccEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDVV  259 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~~~~~D~I  259 (342)
                      ++|+.++|..+|.|+.+..+++.  ..+|+|+|.|+.+++.|++++..++  ++++++++++.++.      ...++|.|
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF~~l~~~l~~~~~~~vDgI   96 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNFANFFEHLDELLVTKIDGI   96 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCHHHHHHHHHhcCCCcccEE
Confidence            46789999999999999999886  4799999999999999999987653  58999999988753      22468999


Q ss_pred             EEcC
Q psy15742        260 FLSP  263 (342)
Q Consensus       260 i~nP  263 (342)
                      +.|-
T Consensus        97 l~DL  100 (305)
T TIGR00006        97 LVDL  100 (305)
T ss_pred             EEec
Confidence            9874

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.83  E-value=4.7e-05  Score=69.92  Aligned_cols=74  Identities=23%  Similarity=0.212  Sum_probs=59.1

Q ss_pred             eEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC---CCCccEEEEcCCCCC
Q psy15742        192 VVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVFLSPPWGG  267 (342)
Q Consensus       192 ~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~---~~~~D~Ii~nPP~~~  267 (342)
                      +++|++||.|+++..+...|. .+.++|+++.+++..+.|...       .++++|+.++..   ...+|+++.+||+.+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~   74 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPCQP   74 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCCChh
Confidence            689999999999998887755 468899999999999988731       256778777653   347999999999997


Q ss_pred             Ccccc
Q psy15742        268 PEYAR  272 (342)
Q Consensus       268 ~~~~~  272 (342)
                      .+..+
T Consensus        75 fS~ag   79 (275)
T cd00315          75 FSIAG   79 (275)
T ss_pred             hhHHh
Confidence            65444

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.80  E-value=6.9e-05  Score=71.65  Aligned_cols=79  Identities=28%  Similarity=0.423  Sum_probs=62.3

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccccC--CCCCccEEEEc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFALA--PSLQGDVVFLS  262 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~-~i~~~~~D~~~~~--~~~~~D~Ii~n  262 (342)
                      .+-++||..+|||.-++..++.   ..+|+..|+|+.+++..++|++.|++++ .+++.+.|+..++  ....||+|=+|
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD  128 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD  128 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence            3458999999999999999987   4789999999999999999999999976 6999999998877  56789999999


Q ss_pred             CCCCCC
Q psy15742        263 PPWGGP  268 (342)
Q Consensus       263 PP~~~~  268 (342)
                       ||+.+
T Consensus       129 -PfGSp  133 (377)
T PF02005_consen  129 -PFGSP  133 (377)
T ss_dssp             --SS--
T ss_pred             -CCCCc
Confidence             56654

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK13699 putative methylase; Provisional

Probab=97.77  E-value=0.0001  Score=65.71  Aligned_cols=59  Identities=19%  Similarity=0.286  Sum_probs=49.7

Q ss_pred             HHHHHHHHHH-hcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc
Q psy15742        176 PEKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY  234 (342)
Q Consensus       176 ~e~~~~~i~~-~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~  234 (342)
                      |..+++.+.. ..++|+.|||++||+|+.++.+.+.+.+.+|+|++++..+.|.++++..
T Consensus       149 P~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        149 PVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             cHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence            4455555443 4568999999999999999999988999999999999999999988654

>PRK00536 speE spermidine synthase; Provisional

Probab=97.69  E-value=0.00048  Score=62.45  Aligned_cols=76  Identities=9%  Similarity=-0.145  Sum_probs=58.5

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY--GV-SHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~--gl-~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      .+..++||=+|.|.|+.+.++.+...+|+-||+|+..++.+++-+...  ++ +++++++.. +.+ ...++||+||+|-
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-~~~~~fDVIIvDs  147 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-LDIKKYDLIICLQ  147 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-ccCCcCCEEEEcC
Confidence            455789999999999999999998669999999999999999955432  23 357777752 221 1235899999994


Q ss_pred             C
Q psy15742        264 P  264 (342)
Q Consensus       264 P  264 (342)
                      .
T Consensus       148 ~  148 (262)
T PRK00536        148 E  148 (262)
T ss_pred             C
Confidence            4

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.68  E-value=0.0002  Score=61.56  Aligned_cols=69  Identities=22%  Similarity=0.141  Sum_probs=59.7

Q ss_pred             eEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742        192 VVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  261 (342)
Q Consensus       192 ~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~  261 (342)
                      +++|+|+|.|.-++.+|-.  ..+++.+|.+..-+...+.-....|++ |++++++.+.+.....+||+|++
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~a  121 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTA  121 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEe
Confidence            8999999999999998875  678999999999999999999999995 89999999999445668999998

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.65  E-value=0.00015  Score=67.40  Aligned_cols=109  Identities=17%  Similarity=0.218  Sum_probs=78.0

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC-----C-CCcEEEEEccccccCC--CCCc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG-----V-SHKIQFIQGDFFALAP--SLQG  256 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~g-----l-~~~i~~~~~D~~~~~~--~~~~  256 (342)
                      ++...+||-+|.|.|-...++.+.  ..+++-||+||.|++.+++|.....     + +.+++++..|+++|..  ...|
T Consensus       287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f  366 (508)
T COG4262         287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF  366 (508)
T ss_pred             ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence            445678999999999999999887  5799999999999999997764332     2 3589999999999973  3489


Q ss_pred             cEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        257 DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       257 D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      |+||.|-|    +..  .+.+.+++..    ....-..+++++.+..+.
T Consensus       367 D~vIVDl~----DP~--tps~~rlYS~----eFY~ll~~~l~e~Gl~Vv  405 (508)
T COG4262         367 DVVIVDLP----DPS--TPSIGRLYSV----EFYRLLSRHLAETGLMVV  405 (508)
T ss_pred             cEEEEeCC----CCC--CcchhhhhhH----HHHHHHHHhcCcCceEEE
Confidence            99999988    432  2344444321    122333445555555554

>KOG2078|consensus

Probab=97.62  E-value=3.6e-05  Score=72.63  Aligned_cols=68  Identities=22%  Similarity=0.297  Sum_probs=61.8

Q ss_pred             HHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccccccC
Q psy15742        184 ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHK-IQFIQGDFFALA  251 (342)
Q Consensus       184 ~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~-i~~~~~D~~~~~  251 (342)
                      ....++|..|.|++||.|-+++.+++.+++|++.|++++++++.+.|+..|.+.+. ++....|+.++.
T Consensus       244 sg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  244 SGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             hhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence            33567899999999999999999999999999999999999999999999998654 999999988776

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.62  E-value=0.00021  Score=64.25  Aligned_cols=64  Identities=28%  Similarity=0.494  Sum_probs=52.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  261 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~  261 (342)
                      .+..+|+|+|+|+|.++..+++.  +.+++..|+ |+.++.++.       .++++++.+|+++..|.  +|++++
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P~--~D~~~l  164 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLPV--ADVYLL  164 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCSS--ESEEEE
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhcc--ccceee
Confidence            34568999999999999999987  789999999 888888888       36999999999965554  999998

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.61  E-value=0.00027  Score=58.81  Aligned_cols=73  Identities=19%  Similarity=0.133  Sum_probs=60.3

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------CCCCccEE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDVV  259 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~~~~~D~I  259 (342)
                      .|..||++|.|||.++-.+.++|   ..++++|.|++-.....+...      .++++++|+.+..      ....||.|
T Consensus        48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l~e~~gq~~D~v  121 (194)
T COG3963          48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTLGEHKGQFFDSV  121 (194)
T ss_pred             cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHHHhhcCCCeeeeE
Confidence            47789999999999999998874   579999999999888776542      5679999998864      34579999


Q ss_pred             EEcCCCCC
Q psy15742        260 FLSPPWGG  267 (342)
Q Consensus       260 i~nPP~~~  267 (342)
                      ||--|.-.
T Consensus       122 iS~lPll~  129 (194)
T COG3963         122 ISGLPLLN  129 (194)
T ss_pred             Eecccccc
Confidence            99988654

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.60  E-value=0.0003  Score=64.54  Aligned_cols=102  Identities=19%  Similarity=0.230  Sum_probs=76.3

Q ss_pred             CeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccccCC--CCCccEEEEc-
Q psy15742        191 DVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALAP--SLQGDVVFLS-  262 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~g--l-~~~i~~~~~D~~~~~~--~~~~D~Ii~n-  262 (342)
                      ++||=+|.|.|+.+.++.+..  .+++.||+++..+++|++-+....  . +++++++.+|..++..  ..+||+|++| 
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            699999999999999999984  899999999999999999886543  2 3689999999999873  2379999987 


Q ss_pred             -CCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        263 -PPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       263 -PP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                       +|- ++.  ...+          .....-.|.+.+.+++++..
T Consensus       158 tdp~-gp~--~~Lf----------t~eFy~~~~~~L~~~Gi~v~  188 (282)
T COG0421         158 TDPV-GPA--EALF----------TEEFYEGCRRALKEDGIFVA  188 (282)
T ss_pred             CCCC-Ccc--cccC----------CHHHHHHHHHhcCCCcEEEE
Confidence             332 221  1111          12244556666777777665

>KOG1975|consensus

Probab=97.59  E-value=0.00014  Score=66.53  Aligned_cols=86  Identities=23%  Similarity=0.242  Sum_probs=65.4

Q ss_pred             HHHHhcCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcC-CCC----cEEEEEccccccC----
Q psy15742        182 HIASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYG-VSH----KIQFIQGDFFALA----  251 (342)
Q Consensus       182 ~i~~~~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~g-l~~----~i~~~~~D~~~~~----  251 (342)
                      +|..+.++++.++|+|||-|+..+-+-+. -..++|+|+....++.|+.+.+... ...    .+.|+.+|++...    
T Consensus       110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~  189 (389)
T KOG1975|consen  110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL  189 (389)
T ss_pred             HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence            44556678889999999999999988776 4679999999999999998876432 111    4789999987542    


Q ss_pred             ---CCCCccEEEEcCCCCC
Q psy15742        252 ---PSLQGDVVFLSPPWGG  267 (342)
Q Consensus       252 ---~~~~~D~Ii~nPP~~~  267 (342)
                         ++.+||+|-|--.+|.
T Consensus       190 ~e~~dp~fDivScQF~~HY  208 (389)
T KOG1975|consen  190 LEFKDPRFDIVSCQFAFHY  208 (389)
T ss_pred             ccCCCCCcceeeeeeeEee
Confidence               2234999988655554

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=97.58  E-value=0.00029  Score=70.26  Aligned_cols=93  Identities=22%  Similarity=0.315  Sum_probs=68.9

Q ss_pred             CHHHHHHHHHHhc----CCCCeEEeccCCCcHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEE
Q psy15742        175 TPEKVAQHIASRC----KASDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFI  243 (342)
Q Consensus       175 ~~e~~~~~i~~~~----~~~~~vLDlgcGtG~~~~~~a~~------~~~v~gvD~s~~~l~~a~~n~~~~gl~~-~i~~~  243 (342)
                      +|..+++.+...+    .++..+.|+.||+|++.+...+.      ...++|.+..+.+...|+.|+..++..+ .....
T Consensus       199 Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~  278 (501)
T TIGR00497       199 TPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNII  278 (501)
T ss_pred             CcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcc
Confidence            5667777665543    25568999999999999876542      2468999999999999999998887642 33444


Q ss_pred             EccccccC---CCCCccEEEEcCCCCC
Q psy15742        244 QGDFFALA---PSLQGDVVFLSPPWGG  267 (342)
Q Consensus       244 ~~D~~~~~---~~~~~D~Ii~nPP~~~  267 (342)
                      .+|.+..+   ...+||.|++||||+.
T Consensus       279 ~~dtl~~~d~~~~~~~D~v~~NpPf~~  305 (501)
T TIGR00497       279 NADTLTTKEWENENGFEVVVSNPPYSI  305 (501)
T ss_pred             cCCcCCCccccccccCCEEeecCCccc
Confidence            56654432   2347999999999986

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.49  E-value=0.0004  Score=60.95  Aligned_cols=71  Identities=20%  Similarity=0.191  Sum_probs=63.0

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCC-ccEEEE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ-GDVVFL  261 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~-~D~Ii~  261 (342)
                      +.+++|+|+|.|.-++.+|-.  ..+|+-+|.....+...+.-....|+ +|++++++.+.++..... ||+|++
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~~~~~D~vts  141 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQEKKQYDVVTS  141 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccccccCcEEEe
Confidence            579999999999999998843  56799999999999999999999999 489999999999875555 999998

>KOG1122|consensus

Probab=97.49  E-value=0.00045  Score=65.43  Aligned_cols=85  Identities=20%  Similarity=0.225  Sum_probs=71.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC---CCCccEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVF  260 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~---~~~~D~Ii  260 (342)
                      .++|.+|||+++-.|+=+.++|..   -..|++.|.+...+...+.|+.+.|+. +....+.|..+++.   .++||-|+
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~~~fDRVL  317 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFPGSFDRVL  317 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccCcccceee
Confidence            457999999999999988888764   467999999999999999999999994 67788888877651   12799999


Q ss_pred             EcCCCCCCcccc
Q psy15742        261 LSPPWGGPEYAR  272 (342)
Q Consensus       261 ~nPP~~~~~~~~  272 (342)
                      +|-|+.|.....
T Consensus       318 LDAPCSGtgvi~  329 (460)
T KOG1122|consen  318 LDAPCSGTGVIS  329 (460)
T ss_pred             ecCCCCCCcccc
Confidence            999999954443

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.48  E-value=0.00042  Score=61.76  Aligned_cols=83  Identities=22%  Similarity=0.288  Sum_probs=62.9

Q ss_pred             HHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC
Q psy15742        177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL  254 (342)
Q Consensus       177 e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~  254 (342)
                      +.+.+.+...+++..+|+|+|||.--+++.+...  +..++|+|+|..+++..+.-+...+.  +.++...|...-.+..
T Consensus        93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~~~~  170 (251)
T PF07091_consen   93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDPPKE  170 (251)
T ss_dssp             HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSHTTS
T ss_pred             HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccCCCC
Confidence            4444555555666789999999999999988765  57999999999999999999998887  6788888988776677


Q ss_pred             CccEEEE
Q psy15742        255 QGDVVFL  261 (342)
Q Consensus       255 ~~D~Ii~  261 (342)
                      ..|+.++
T Consensus       171 ~~DlaLl  177 (251)
T PF07091_consen  171 PADLALL  177 (251)
T ss_dssp             EESEEEE
T ss_pred             CcchhhH
Confidence            7898887

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.42  E-value=0.00051  Score=64.23  Aligned_cols=77  Identities=27%  Similarity=0.381  Sum_probs=64.8

Q ss_pred             CCeEEeccCCCcHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEEEcCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV-CQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSPPW  265 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~-~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii~nPP~  265 (342)
                      +.+|+|..+|||.-++.+|.. +. .|+.-|+||.+++.++.|++.|... +...++.|+..++..  ..||+|=+| ||
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~~~~fd~IDiD-PF  130 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHELHRAFDVIDID-PF  130 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhcCCCccEEecC-CC
Confidence            568999999999999999987 33 7999999999999999999999442 567777998887744  689999999 56


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      +.+
T Consensus       131 GSP  133 (380)
T COG1867         131 GSP  133 (380)
T ss_pred             CCC
Confidence            654

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=97.31  E-value=0.00063  Score=63.62  Aligned_cols=102  Identities=23%  Similarity=0.325  Sum_probs=67.0

Q ss_pred             eEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEEEcCCCC
Q psy15742        192 VVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSPPWG  266 (342)
Q Consensus       192 ~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii~nPP~~  266 (342)
                      +++|++||.|+++..+.+.| ..+.++|+++.+.+.-+.|..        ....+|+.++.    +. .+|+++.-||+.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ   72 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPPCQ   72 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE---T
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccCCc
Confidence            68999999999999998886 467899999999999999973        78888988774    22 599999999999


Q ss_pred             CCccccccccccccCcCCCCchhhhHhhhccCCCceee
Q psy15742        267 GPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYY  304 (342)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (342)
                      +.+..+......+-...  =...++++.....|..+++
T Consensus        73 ~fS~ag~~~~~~d~r~~--L~~~~~~~v~~~~Pk~~~~  108 (335)
T PF00145_consen   73 GFSIAGKRKGFDDPRNS--LFFEFLRIVKELKPKYFLL  108 (335)
T ss_dssp             TTSTTSTHHCCCCHTTS--HHHHHHHHHHHHS-SEEEE
T ss_pred             eEeccccccccccccch--hhHHHHHHHhhccceEEEe
Confidence            87655522221111011  0124555666666655443

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.23  E-value=0.00036  Score=59.81  Aligned_cols=62  Identities=24%  Similarity=0.322  Sum_probs=45.7

Q ss_pred             CCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---------C--CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------P--SLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---------~--~~~  255 (342)
                      +.++||+||++|+++..+.+.+   .+|+|+|+.+.           ... .++.++++|+.+..         .  ...
T Consensus        24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence            4799999999999999999886   89999999876           111 35677777765431         1  258


Q ss_pred             ccEEEEcC
Q psy15742        256 GDVVFLSP  263 (342)
Q Consensus       256 ~D~Ii~nP  263 (342)
                      +|+|++|-
T Consensus        92 ~dlv~~D~   99 (181)
T PF01728_consen   92 FDLVLSDM   99 (181)
T ss_dssp             ESEEEE--
T ss_pred             cceecccc
Confidence            99999996

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.22  E-value=0.0023  Score=55.55  Aligned_cols=134  Identities=18%  Similarity=0.105  Sum_probs=78.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---------CCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------PSL  254 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---------~~~  254 (342)
                      +.++.+|+|+||-.|+.+..+++. +  ..|+|+|+.|-.            .-.++.++++|+++..         ...
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~  110 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGA  110 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHcCCC
Confidence            467899999999999999999987 2  349999998731            1136899999998753         233


Q ss_pred             CccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhh-ccCCCceeec--CCCCCHHHHHHhhCCCcEEEEecccC
Q psy15742        255 QGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVAR-GISPNVGYYL--PRTSDVFEIFHDSGKKGSFISLTGRQ  331 (342)
Q Consensus       255 ~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l--~~~~~~~~l~~~~~~~~~i~~i~~~~  331 (342)
                      .+|+|++|+.-....    ..++....-. .-.....+++. .+.+++.+..  -..-..+++...+...|+.+.+....
T Consensus       111 ~~DvV~sD~ap~~~g----~~~~Dh~r~~-~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~  185 (205)
T COG0293         111 PVDVVLSDMAPNTSG----NRSVDHARSM-YLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPK  185 (205)
T ss_pred             CcceEEecCCCCcCC----CccccHHHHH-HHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecCc
Confidence            579999986532211    1111111000 00112222222 3333333332  33444555666666677777666655


Q ss_pred             CCCCCC
Q psy15742        332 MFSPSQ  337 (342)
Q Consensus       332 ~fp~t~  337 (342)
                      -+...+
T Consensus       186 aSR~~S  191 (205)
T COG0293         186 ASRKRS  191 (205)
T ss_pred             cccCCC
Confidence            544443

>KOG1227|consensus

Probab=97.20  E-value=0.00016  Score=65.37  Aligned_cols=73  Identities=23%  Similarity=0.366  Sum_probs=64.3

Q ss_pred             CCCeEEeccCCCcHHHH-HHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742        189 ASDVVIDGFCGCGGNTI-QFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  261 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~-~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~  261 (342)
                      .+..|.|+++|.|++++ .+... +..|+++|.+|.+++..++|++.|++.++..++.+|.....++...|-|.+
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnL  268 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNL  268 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheee
Confidence            46789999999999999 44444 788999999999999999999999998888899999988878888888876

>KOG4058|consensus

Probab=97.19  E-value=0.0011  Score=54.08  Aligned_cols=77  Identities=17%  Similarity=0.236  Sum_probs=62.7

Q ss_pred             CCHHHHHHHHHHhc--CCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q psy15742        174 VTPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  250 (342)
Q Consensus       174 ~~~e~~~~~i~~~~--~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~  250 (342)
                      .+.|++..- .+.+  ++..+.+|+|+|.|.+.+.+++.| ...+|+|+++-.+.+++-.+-+.|+.+...|..-|+.+.
T Consensus        56 AtteQv~nV-LSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~  134 (199)
T KOG4058|consen   56 ATTEQVENV-LSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV  134 (199)
T ss_pred             ccHHHHHHH-HHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence            344544333 3333  344689999999999999999986 788999999999999999999999988899999999877


Q ss_pred             C
Q psy15742        251 A  251 (342)
Q Consensus       251 ~  251 (342)
                      .
T Consensus       135 d  135 (199)
T KOG4058|consen  135 D  135 (199)
T ss_pred             c
Confidence            5

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=97.16  E-value=0.0012  Score=61.91  Aligned_cols=73  Identities=23%  Similarity=0.270  Sum_probs=57.7

Q ss_pred             EEeccCCCcHHHHHHHHhCCEE-EEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEEcCCCCCCc
Q psy15742        193 VIDGFCGCGGNTIQFAAVCQKV-ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       193 vLDlgcGtG~~~~~~a~~~~~v-~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~nPP~~~~~  269 (342)
                      |+|++||.|+++..+...|.++ .++|+++.+++.-+.|..      . .++.+|+.++..  -..+|+++..||+.+.+
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~------~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS   73 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG------N-KVPFGDITKISPSDIPDFDILLGGFPCQPFS   73 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC------C-CCCccChhhhhhhhCCCcCEEEecCCCcccc
Confidence            5899999999999998877765 579999999999888863      2 445678877642  23689999999998876


Q ss_pred             ccc
Q psy15742        270 YAR  272 (342)
Q Consensus       270 ~~~  272 (342)
                      ..+
T Consensus        74 ~ag   76 (315)
T TIGR00675        74 IAG   76 (315)
T ss_pred             hhc
Confidence            444

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.14  E-value=0.0022  Score=55.66  Aligned_cols=91  Identities=14%  Similarity=0.032  Sum_probs=64.0

Q ss_pred             HHHHHHHHhcCCCCe-EEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---
Q psy15742        178 KVAQHIASRCKASDV-VIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---  251 (342)
Q Consensus       178 ~~~~~i~~~~~~~~~-vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---  251 (342)
                      -+++.+...+++... |||+|||||--+.++|+.  .....-.|.++..+.-.+..+...++++-...+.-|+.+..   
T Consensus        13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~   92 (204)
T PF06080_consen   13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW   92 (204)
T ss_pred             HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence            344444555555555 999999999999999997  56778899999998787887777777532334556665542   


Q ss_pred             ------CCCCccEEEEcCCCCCC
Q psy15742        252 ------PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       252 ------~~~~~D~Ii~nPP~~~~  268 (342)
                            ....||.|++---.|..
T Consensus        93 ~~~~~~~~~~~D~i~~~N~lHI~  115 (204)
T PF06080_consen   93 ELPAPLSPESFDAIFCINMLHIS  115 (204)
T ss_pred             ccccccCCCCcceeeehhHHHhc
Confidence                  12479999985444443

The function of this family is unknown.

>PHA01634 hypothetical protein

Probab=97.12  E-value=0.0024  Score=50.73  Aligned_cols=69  Identities=10%  Similarity=0.168  Sum_probs=53.9

Q ss_pred             CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  262 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n  262 (342)
                      +++|+|+|++.|..+++++.. +..|++++.++...+..++|++.+.+-++..- ..   +|. .-+.||+.++|
T Consensus        29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~-~~---eW~~~Y~~~Di~~iD   99 (156)
T PHA01634         29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVM-KG---EWNGEYEDVDIFVMD   99 (156)
T ss_pred             CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceee-cc---cccccCCCcceEEEE
Confidence            789999999999999999887 68899999999999999999988765322211 11   232 23478888886

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.11  E-value=0.0052  Score=55.91  Aligned_cols=78  Identities=15%  Similarity=0.180  Sum_probs=63.6

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVF  260 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii  260 (342)
                      ..-+|+|+.||.|.-.+.+...    ..+|.-.|.|+..++..++-++..|+.+-++|.++|+++..    .....++++
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i  214 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI  214 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence            4568999999999998888765    26899999999999999999999999866699999999863    123567877


Q ss_pred             EcCCCC
Q psy15742        261 LSPPWG  266 (342)
Q Consensus       261 ~nPP~~  266 (342)
                      +.--|.
T Consensus       215 VsGL~E  220 (311)
T PF12147_consen  215 VSGLYE  220 (311)
T ss_pred             Eecchh
Confidence            754443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG2361|consensus

Probab=97.10  E-value=0.0014  Score=57.77  Aligned_cols=68  Identities=16%  Similarity=0.285  Sum_probs=51.7

Q ss_pred             eEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-----CCCCCccEEEE
Q psy15742        192 VVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-----APSLQGDVVFL  261 (342)
Q Consensus       192 ~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~-----~~~~~~D~Ii~  261 (342)
                      +||++|||.|.....+.+.    ...|+++|.|+.+++..+.|.....  .++.....|+...     +..+++|.|++
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~  150 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITL  150 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEE
Confidence            7999999999999999875    3789999999999999999876443  3555555555432     23457887765

>KOG2912|consensus

Probab=97.08  E-value=0.0031  Score=57.73  Aligned_cols=74  Identities=16%  Similarity=0.127  Sum_probs=56.3

Q ss_pred             eccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc--------cCCCCCccEEEEc
Q psy15742        195 DGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA--------LAPSLQGDVVFLS  262 (342)
Q Consensus       195 DlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~--------~~~~~~~D~Ii~n  262 (342)
                      -+--|||..+++.+.+    ++...++|++.-..+.|..|...+++++.+.+++....+        ..++..||++.||
T Consensus       106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN  185 (419)
T KOG2912|consen  106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN  185 (419)
T ss_pred             eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence            3334566666666553    688999999999999999999999998888887764322        2233469999999


Q ss_pred             CCCCCC
Q psy15742        263 PPWGGP  268 (342)
Q Consensus       263 PP~~~~  268 (342)
                      |||-..
T Consensus       186 PPFfe~  191 (419)
T KOG2912|consen  186 PPFFEN  191 (419)
T ss_pred             Cchhhc
Confidence            999764

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.99  E-value=0.0031  Score=58.43  Aligned_cols=75  Identities=24%  Similarity=0.387  Sum_probs=57.2

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-------CCCCccE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDV  258 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-------~~~~~D~  258 (342)
                      +++..++|..-|.|+.+..+.+.  ..+++|+|.|+.+++.|++++...  .+++.++++++.++.       ....+|.
T Consensus        19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~~dg   96 (310)
T PF01795_consen   19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINKVDG   96 (310)
T ss_dssp             -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-EEE
T ss_pred             CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCccCE
Confidence            45779999999999999999876  689999999999999999988755  358999999988763       2247999


Q ss_pred             EEEcCC
Q psy15742        259 VFLSPP  264 (342)
Q Consensus       259 Ii~nPP  264 (342)
                      |++|.=
T Consensus        97 iL~DLG  102 (310)
T PF01795_consen   97 ILFDLG  102 (310)
T ss_dssp             EEEE-S
T ss_pred             EEEccc
Confidence            999843

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.92  E-value=0.0042  Score=57.03  Aligned_cols=73  Identities=19%  Similarity=0.154  Sum_probs=46.1

Q ss_pred             CCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  262 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n  262 (342)
                      ..+|||+|||+|+....+...   -..++++|.|+.|++.++.-++...-.....+......+..+....|+|++.
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s  109 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIAS  109 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEe
Confidence            569999999999876555443   4679999999999999998765432111111111111112222345999984

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.91  E-value=0.0037  Score=58.96  Aligned_cols=77  Identities=29%  Similarity=0.325  Sum_probs=61.7

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC----CccEEEEcCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL----QGDVVFLSPP  264 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~----~~D~Ii~nPP  264 (342)
                      ..+++|++||.|++.+.+...|. -+.++|+++.+++.-+.|...      ..++..|+.+.....    .+|+++.-||
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP   76 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP   76 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence            34799999999999999988764 568999999999998888742      457778887665322    7999999999


Q ss_pred             CCCCcccc
Q psy15742        265 WGGPEYAR  272 (342)
Q Consensus       265 ~~~~~~~~  272 (342)
                      +.+.+..+
T Consensus        77 CQ~FS~aG   84 (328)
T COG0270          77 CQDFSIAG   84 (328)
T ss_pred             CcchhhcC
Confidence            99876655

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=96.86  E-value=0.005  Score=55.24  Aligned_cols=85  Identities=15%  Similarity=0.128  Sum_probs=56.7

Q ss_pred             cccCCCCCCHHHHHHHHHHh-----c-CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q psy15742        167 VIDGWYSVTPEKVAQHIASR-----C-KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKI  240 (342)
Q Consensus       167 ~~~~~~~~~~e~~~~~i~~~-----~-~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i  240 (342)
                      +.++.|-.+.++..+.+...     . ....++||+|+|.|..+..++....+|++.|.|+.|...    ++..|.    
T Consensus        66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~r----L~~kg~----  137 (265)
T PF05219_consen   66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWR----LSKKGF----  137 (265)
T ss_pred             cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHH----HHhCCC----
Confidence            34444555555555554432     1 135689999999999999999998999999999998544    443454    


Q ss_pred             EEEEccccccC-CCCCccEEEE
Q psy15742        241 QFIQGDFFALA-PSLQGDVVFL  261 (342)
Q Consensus       241 ~~~~~D~~~~~-~~~~~D~Ii~  261 (342)
                      +++  |..++. .+.+||+|.|
T Consensus       138 ~vl--~~~~w~~~~~~fDvIsc  157 (265)
T PF05219_consen  138 TVL--DIDDWQQTDFKFDVISC  157 (265)
T ss_pred             eEE--ehhhhhccCCceEEEee
Confidence            233  222333 2348999987

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.85  E-value=0.0078  Score=55.02  Aligned_cols=73  Identities=26%  Similarity=0.476  Sum_probs=61.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------CCCCccE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDV  258 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~~~~~D~  258 (342)
                      ++++..+|..-|.|+.+..+....   .+++|+|.|+.+++.|++.+..++  +++.++++++.++.      ...++|-
T Consensus        22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~i~~vDG   99 (314)
T COG0275          22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELGIGKVDG   99 (314)
T ss_pred             CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcCCCceeE
Confidence            457799999999999999998873   679999999999999999998776  58999999887653      2347788


Q ss_pred             EEEc
Q psy15742        259 VFLS  262 (342)
Q Consensus       259 Ii~n  262 (342)
                      |+.|
T Consensus       100 iL~D  103 (314)
T COG0275         100 ILLD  103 (314)
T ss_pred             EEEe
Confidence            8776

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=96.83  E-value=0.0012  Score=57.27  Aligned_cols=92  Identities=17%  Similarity=0.150  Sum_probs=48.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      +++..|.|+|||.+.++..+. .+..|...|+-..                +-.++.+|+.+.| ++...|++|..-.--
T Consensus        71 ~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~----------------n~~Vtacdia~vPL~~~svDv~VfcLSLM  133 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP----------------NPRVTACDIANVPLEDESVDVAVFCLSLM  133 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH---S---EEEEESS-S----------------STTEEES-TTS-S--TT-EEEEEEES---
T ss_pred             CCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC----------------CCCEEEecCccCcCCCCceeEEEEEhhhh
Confidence            446689999999999985542 4578999998651                2247789998887 667999999988888


Q ss_pred             CCccccccccccccCcCCCCchhhhHhhhcc
Q psy15742        267 GPEYARSSFSIDNIFPEQGGGRRLFQVARGI  297 (342)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (342)
                      |.++........++++. +|.+.+.+...++
T Consensus       134 GTn~~~fi~EA~RvLK~-~G~L~IAEV~SRf  163 (219)
T PF05148_consen  134 GTNWPDFIREANRVLKP-GGILKIAEVKSRF  163 (219)
T ss_dssp             SS-HHHHHHHHHHHEEE-EEEEEEEEEGGG-
T ss_pred             CCCcHHHHHHHHheecc-CcEEEEEEecccC
Confidence            88776544444444432 1333444444333

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=96.66  E-value=0.0033  Score=52.86  Aligned_cols=48  Identities=23%  Similarity=0.364  Sum_probs=38.4

Q ss_pred             EEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742        215 ISIDIDPAKLRLAQHNASVYG--VSHKIQFIQGDFFALA-PSLQGDVVFLS  262 (342)
Q Consensus       215 ~gvD~s~~~l~~a~~n~~~~g--l~~~i~~~~~D~~~~~-~~~~~D~Ii~n  262 (342)
                      +|+|+|++|++.|+++.+..+  ...+++++++|+.+++ ++++||+|++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~   51 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMG   51 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEec
Confidence            589999999999988765332  2247999999999886 45589999985

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.63  E-value=0.0007  Score=52.56  Aligned_cols=70  Identities=27%  Similarity=0.299  Sum_probs=26.9

Q ss_pred             EeccCCCcHHHHHHHHh---C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcCC
Q psy15742        194 IDGFCGCGGNTIQFAAV---C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPP  264 (342)
Q Consensus       194 LDlgcGtG~~~~~~a~~---~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nPP  264 (342)
                      ||+|+..|..+..+++.   .  .+++++|..+. .+.++++++..++.++++++++|..+..   +..++|+|++|-+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD   78 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence            58999999999888764   2  37999999996 4445555555677678999999997664   2358999999865

>KOG1501|consensus

Probab=96.62  E-value=0.0039  Score=59.42  Aligned_cols=58  Identities=21%  Similarity=0.178  Sum_probs=51.8

Q ss_pred             eEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q psy15742        192 VVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA  249 (342)
Q Consensus       192 ~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~  249 (342)
                      .|||+|+|||.++..+++. +-+|+++|.=..|.+.|++-...+|.+++|+++.--..+
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte  127 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE  127 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence            6899999999999999987 678999999999999999999999999999888754443

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=96.56  E-value=0.0058  Score=53.46  Aligned_cols=132  Identities=11%  Similarity=-0.002  Sum_probs=76.5

Q ss_pred             CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC-CCccEEEEcCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-LQGDVVFLSPPWGG  267 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~-~~~D~Ii~nPP~~~  267 (342)
                      ..+.||.|||.|.++-.+... ..+|.-||.++..++.|++.+...+ ..-.++++..+.++.|. .+||+|.+.=--++
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh  134 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH  134 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred             cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence            468999999999999877554 8899999999999999998775421 12467888888888765 69999999311111


Q ss_pred             CccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCH-----------------HHHHHhh-CCCcEEEEecc
Q psy15742        268 PEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDV-----------------FEIFHDS-GKKGSFISLTG  329 (342)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------~~l~~~~-~~~~~i~~i~~  329 (342)
                      .+.    .++         ...+..|...+.+++++++-.|...                 ..+..++ ..|.+++....
T Consensus       135 LTD----~dl---------v~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~  201 (218)
T PF05891_consen  135 LTD----EDL---------VAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEK  201 (218)
T ss_dssp             S-H----HHH---------HHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred             CCH----HHH---------HHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence            110    111         1144456666666666665222211                 1222222 36889999999


Q ss_pred             cCCCCC
Q psy15742        330 RQMFSP  335 (342)
Q Consensus       330 ~~~fp~  335 (342)
                      +.-||.
T Consensus       202 Q~~fP~  207 (218)
T PF05891_consen  202 QKGFPK  207 (218)
T ss_dssp             -TT--T
T ss_pred             ccCCCc
Confidence            988887

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.53  E-value=0.012  Score=55.02  Aligned_cols=70  Identities=11%  Similarity=0.105  Sum_probs=52.1

Q ss_pred             HHHHHhcCCCCeEEeccCCCcHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEcccccc
Q psy15742        181 QHIASRCKASDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFAL  250 (342)
Q Consensus       181 ~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~------~~~v~gvD~s~~~l~~a~~n~~~~gl~~-~i~~~~~D~~~~  250 (342)
                      ..|...++++..++|+|||+|.-+..+.+.      ....+++|+|..+++.+..++.....+. .+.-+++|+.+.
T Consensus        68 ~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        68 SDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             HHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence            455666777889999999999975554332      4678999999999999999998434321 345589998764

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG3045|consensus

Probab=96.48  E-value=0.0016  Score=58.01  Aligned_cols=82  Identities=21%  Similarity=0.203  Sum_probs=59.2

Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q psy15742        170 GWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA  249 (342)
Q Consensus       170 ~~~~~~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~  249 (342)
                      .|-......+++.|..+ +....|.|+|||-+-++.   .....|.+.|+-+                .+-.++.+|+.+
T Consensus       162 kWP~nPld~ii~~ik~r-~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------------~~~~V~~cDm~~  221 (325)
T KOG3045|consen  162 KWPENPLDVIIRKIKRR-PKNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------------VNERVIACDMRN  221 (325)
T ss_pred             hCCCChHHHHHHHHHhC-cCceEEEecccchhhhhh---ccccceeeeeeec----------------CCCceeeccccC
Confidence            45554446666666655 344588999999997765   3467899999754                145788999999


Q ss_pred             cC-CCCCccEEEEcCCCCCCccc
Q psy15742        250 LA-PSLQGDVVFLSPPWGGPEYA  271 (342)
Q Consensus       250 ~~-~~~~~D~Ii~nPP~~~~~~~  271 (342)
                      .+ ++.+.|++|..-...|.+..
T Consensus       222 vPl~d~svDvaV~CLSLMgtn~~  244 (325)
T KOG3045|consen  222 VPLEDESVDVAVFCLSLMGTNLA  244 (325)
T ss_pred             CcCccCcccEEEeeHhhhcccHH
Confidence            87 66799999987777776543

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.42  E-value=0.0073  Score=54.36  Aligned_cols=76  Identities=18%  Similarity=0.164  Sum_probs=64.1

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC---CCccEEEEcCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS---LQGDVVFLSPP  264 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~---~~~D~Ii~nPP  264 (342)
                      |+.|+-+| -.-..++++|.-  ..+|.-+|+++..+....+-++..|+ ++++.+.-|..+..|.   .+||+++.|||
T Consensus       153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp  230 (354)
T COG1568         153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRKFDVFITDPP  230 (354)
T ss_pred             CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHHHhhCCeeecCch
Confidence            66798888 556667776654  78999999999999999999999999 4799999999988754   48999999999


Q ss_pred             CCC
Q psy15742        265 WGG  267 (342)
Q Consensus       265 ~~~  267 (342)
                      +.-
T Consensus       231 eTi  233 (354)
T COG1568         231 ETI  233 (354)
T ss_pred             hhH
Confidence            753

>KOG2940|consensus

Probab=96.36  E-value=0.0066  Score=53.23  Aligned_cols=80  Identities=14%  Similarity=0.103  Sum_probs=60.0

Q ss_pred             CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGG  267 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~~  267 (342)
                      -..++|+|||.|.+...+... ..+++-+|.|..|++.++.. +..++  .+....+|-..++ .++++|+|++.-.-+.
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslHW  149 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLHW  149 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhhhhh
Confidence            347999999999999998766 56889999999999988764 22444  4556667765554 4568999999877666


Q ss_pred             Ccccc
Q psy15742        268 PEYAR  272 (342)
Q Consensus       268 ~~~~~  272 (342)
                      .+..+
T Consensus       150 ~NdLP  154 (325)
T KOG2940|consen  150 TNDLP  154 (325)
T ss_pred             hccCc
Confidence            65444

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.32  E-value=0.013  Score=53.50  Aligned_cols=74  Identities=30%  Similarity=0.331  Sum_probs=46.2

Q ss_pred             CCeEEeccCC-CcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEEccccccCC-CCCccEEEEcC
Q psy15742        190 SDVVIDGFCG-CGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNAS-VYGVSHKIQFIQGDFFALAP-SLQGDVVFLSP  263 (342)
Q Consensus       190 ~~~vLDlgcG-tG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~-~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nP  263 (342)
                      +.+|+=+||| --..++.+++.   +..|+++|+|+++++.+++-++ ..|+..+++|+.+|..+... -..||+|+.--
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa  200 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA  200 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence            3599999999 45566677754   5679999999999999998777 56777789999999987753 35899999853

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.29  E-value=0.0024  Score=56.41  Aligned_cols=74  Identities=18%  Similarity=0.237  Sum_probs=55.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEE-EEEccccccCC---CCCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQ-FIQGDFFALAP---SLQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~-~~~~D~~~~~~---~~~~D~Ii~nP  263 (342)
                      +|..+||+|+.||+|+-.+.+. +.+|+|+|.....+.|--++=      +++. +...|+..+.+   ....|++++|-
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d------~rV~~~E~tN~r~l~~~~~~~~~d~~v~Dv  152 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND------PRVIVLERTNVRYLTPEDFTEKPDLIVIDV  152 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC------CcEEEEecCChhhCCHHHcccCCCeEEEEe
Confidence            5889999999999999999988 789999999998887754431      2443 34456655432   23689999998


Q ss_pred             CCCCC
Q psy15742        264 PWGGP  268 (342)
Q Consensus       264 P~~~~  268 (342)
                      .|...
T Consensus       153 SFISL  157 (245)
T COG1189         153 SFISL  157 (245)
T ss_pred             ehhhH
Confidence            88754

>PRK10458 DNA cytosine methylase; Provisional

Probab=96.20  E-value=0.019  Score=56.44  Aligned_cols=80  Identities=20%  Similarity=0.147  Sum_probs=58.2

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----------------
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----------------  252 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----------------  252 (342)
                      .-+++|+|||.|+++..+-..|. .|.++|+++.+.+.-+.|....   +....+.+|+.++..                
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~  164 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHIR  164 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhhh
Confidence            44899999999999999977654 5688999999988888875211   123445566665531                


Q ss_pred             --CCCccEEEEcCCCCCCcccc
Q psy15742        253 --SLQGDVVFLSPPWGGPEYAR  272 (342)
Q Consensus       253 --~~~~D~Ii~nPP~~~~~~~~  272 (342)
                        ...+|+++..||+.+-+..+
T Consensus       165 ~~~p~~DvL~gGpPCQ~FS~AG  186 (467)
T PRK10458        165 QHIPDHDVLLAGFPCQPFSLAG  186 (467)
T ss_pred             ccCCCCCEEEEcCCCCccchhc
Confidence              12589999999999766543

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.19  E-value=0.0081  Score=55.33  Aligned_cols=103  Identities=18%  Similarity=0.131  Sum_probs=64.7

Q ss_pred             CCeEEeccCCCcHHH----HHHHHh------CCEEEEEeCCHHHHHHHHHHHHH-----------------------cC-
Q psy15742        190 SDVVIDGFCGCGGNT----IQFAAV------CQKVISIDIDPAKLRLAQHNASV-----------------------YG-  235 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~----~~~a~~------~~~v~gvD~s~~~l~~a~~n~~~-----------------------~g-  235 (342)
                      .-+|+..||+||-=.    +.+.+.      ..+|+|+|+|+.+++.|++-.-.                       .| 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            369999999999743    333332      25799999999999999876300                       01 


Q ss_pred             ------CCCcEEEEEccccccC--CCCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        236 ------VSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       236 ------l~~~i~~~~~D~~~~~--~~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                            +...|+|.+.|+.+.+  +.+.||+|+|---+...+..    .         -...+..+...+.|++.+++
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~----~---------~~~vl~~l~~~L~pgG~L~l  260 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT----T---------QERILRRFVPLLKPDGLLFA  260 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHH----H---------HHHHHHHHHHHhCCCcEEEE
Confidence                  1246788888988743  34689999993222111100    0         01144456666777777766

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.15  E-value=0.015  Score=56.76  Aligned_cols=95  Identities=25%  Similarity=0.238  Sum_probs=56.4

Q ss_pred             CeEEeccCCCcHHHHHHHHhCCEEEEE---eCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        191 DVVIDGFCGCGGNTIQFAAVCQKVISI---DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~~~~v~gv---D~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      ..+||+|||+|+++.++...+..+.++   |..+..++.|.+.    |++.-+.  ..-...++ +++.||+|-|.=-. 
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~--~~~s~rLPfp~~~fDmvHcsrc~-  191 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER----GVPAMIG--VLGSQRLPFPSNAFDMVHCSRCL-  191 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc----Ccchhhh--hhccccccCCccchhhhhccccc-
Confidence            368999999999999999887655444   3444455555433    5532111  11112333 66789999763111 


Q ss_pred             CCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        267 GPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                                 -.+.+.  +++.+++.-+.+.+++.+++
T Consensus       192 -----------i~W~~~--~g~~l~evdRvLRpGGyfv~  217 (506)
T PF03141_consen  192 -----------IPWHPN--DGFLLFEVDRVLRPGGYFVL  217 (506)
T ss_pred             -----------ccchhc--ccceeehhhhhhccCceEEe
Confidence                       112233  45666777777777777766

; GO: 0008168 methyltransferase activity

>KOG1253|consensus

Probab=96.14  E-value=0.0027  Score=61.41  Aligned_cols=80  Identities=23%  Similarity=0.348  Sum_probs=68.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVV  259 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~I  259 (342)
                      .++-+|||..|+||.-++..|+.   ...|++.|.++.+++..+.|++.|++++.++..+.|+....     ....||+|
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI  187 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI  187 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence            34678999999999999999986   56899999999999999999999999888899999987654     23589999


Q ss_pred             EEcCCCCCC
Q psy15742        260 FLSPPWGGP  268 (342)
Q Consensus       260 i~nPP~~~~  268 (342)
                      =+| ||+..
T Consensus       188 DLD-PyGs~  195 (525)
T KOG1253|consen  188 DLD-PYGSP  195 (525)
T ss_pred             ecC-CCCCc
Confidence            999 56654

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.07  E-value=0.0091  Score=51.93  Aligned_cols=72  Identities=18%  Similarity=0.352  Sum_probs=43.1

Q ss_pred             CCeEEeccCCCcHH----HHHHHHh-------CCEEEEEeCCHHHHHHHHHHH--------------HHc-----C----
Q psy15742        190 SDVVIDGFCGCGGN----TIQFAAV-------CQKVISIDIDPAKLRLAQHNA--------------SVY-----G----  235 (342)
Q Consensus       190 ~~~vLDlgcGtG~~----~~~~a~~-------~~~v~gvD~s~~~l~~a~~n~--------------~~~-----g----  235 (342)
                      .-+|+..||+||-=    ++.+...       ..+|+|.|+|+.+++.|++-.              +++     |    
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~  111 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR  111 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence            45899999999974    3333341       258999999999999997532              111     1    


Q ss_pred             ----CCCcEEEEEccccc-cCCCCCccEEEE
Q psy15742        236 ----VSHKIQFIQGDFFA-LAPSLQGDVVFL  261 (342)
Q Consensus       236 ----l~~~i~~~~~D~~~-~~~~~~~D~Ii~  261 (342)
                          +..+++|.+.|+.+ .+..+.||+|+|
T Consensus       112 v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~C  142 (196)
T PF01739_consen  112 VKPELRKMVRFRRHNLLDPDPPFGRFDLIFC  142 (196)
T ss_dssp             E-HHHHTTEEEEE--TT-S------EEEEEE
T ss_pred             EChHHcCceEEEecccCCCCcccCCccEEEe
Confidence                11468899999998 455678999999

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.01  E-value=0.1  Score=45.92  Aligned_cols=75  Identities=17%  Similarity=0.078  Sum_probs=53.9

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVV  259 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~I  259 (342)
                      +++|.+||-+|+.+|+..-+++.-   ...|+|||.|+...+..-.-++..   .|+-.+.+|+....    --...|+|
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VDvI  147 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVDVI  147 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhcccccccEE
Confidence            457899999999999999999885   458999999997765555433332   38889999998653    12389999


Q ss_pred             EEcCC
Q psy15742        260 FLSPP  264 (342)
Q Consensus       260 i~nPP  264 (342)
                      ++|-+
T Consensus       148 ~~DVa  152 (229)
T PF01269_consen  148 FQDVA  152 (229)
T ss_dssp             EEE-S
T ss_pred             EecCC
Confidence            99977

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=95.84  E-value=0.033  Score=51.46  Aligned_cols=57  Identities=23%  Similarity=0.369  Sum_probs=48.6

Q ss_pred             HHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc
Q psy15742        178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY  234 (342)
Q Consensus       178 ~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~  234 (342)
                      .+.+.+.....+++.|+|+++|+|+.++.+...+...+|+|+++..++.+.+.+...
T Consensus       211 l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         211 LIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             HHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence            333444455668999999999999999999888999999999999999999998754

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.82  E-value=0.066  Score=42.70  Aligned_cols=72  Identities=26%  Similarity=0.350  Sum_probs=48.8

Q ss_pred             EEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc--cC-CC-CCccEEEEcCCC
Q psy15742        193 VIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA--LA-PS-LQGDVVFLSPPW  265 (342)
Q Consensus       193 vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~--~~-~~-~~~D~Ii~nPP~  265 (342)
                      ++|+|||+|... .++..   +..++|+|.++.++..++......+. ..+.+..+|...  .. .. ..||++.+....
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  129 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL  129 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence            999999999976 33333   24899999999999986655433221 116788888776  33 22 379999555443


Q ss_pred             C
Q psy15742        266 G  266 (342)
Q Consensus       266 ~  266 (342)
                      .
T Consensus       130 ~  130 (257)
T COG0500         130 H  130 (257)
T ss_pred             h
Confidence            3

>KOG2198|consensus

Probab=95.70  E-value=0.04  Score=51.80  Aligned_cols=91  Identities=23%  Similarity=0.303  Sum_probs=67.7

Q ss_pred             HHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCC------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC
Q psy15742        178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ------KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA  251 (342)
Q Consensus       178 ~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~------~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~  251 (342)
                      +++.-+.-.++++.+|||+|+-.|+-++.+.+..+      .|++-|.++..+.+..+.+....- .+..+...|+..++
T Consensus       144 SmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p  222 (375)
T KOG2198|consen  144 SMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFP  222 (375)
T ss_pred             hccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceecc
Confidence            34444444567899999999999999988876532      899999999999999998854432 35555665554443


Q ss_pred             ----------CCCCccEEEEcCCCCCCc
Q psy15742        252 ----------PSLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       252 ----------~~~~~D~Ii~nPP~~~~~  269 (342)
                                ....||-|++|-|+.+-.
T Consensus       223 ~~~~~~~~~~~~~~fDrVLvDVPCS~Dg  250 (375)
T KOG2198|consen  223 NIYLKDGNDKEQLKFDRVLVDVPCSGDG  250 (375)
T ss_pred             ccccccCchhhhhhcceeEEecccCCCc
Confidence                      123799999999999864

>KOG1269|consensus

Probab=95.06  E-value=0.053  Score=51.67  Aligned_cols=79  Identities=22%  Similarity=0.209  Sum_probs=66.0

Q ss_pred             HHHhcCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEE
Q psy15742        183 IASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVF  260 (342)
Q Consensus       183 i~~~~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii  260 (342)
                      +...+.++..++|+|||.|....+.+.. +..++|+|.++..+..+.......++.++..++.+|+.+.+ ++..||.+-
T Consensus       104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~  183 (364)
T KOG1269|consen  104 LRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVR  183 (364)
T ss_pred             HhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEE
Confidence            3444567778999999999999999987 68999999999999988888888888777778888988875 567888886


Q ss_pred             E
Q psy15742        261 L  261 (342)
Q Consensus       261 ~  261 (342)
                      +
T Consensus       184 ~  184 (364)
T KOG1269|consen  184 F  184 (364)
T ss_pred             E
Confidence            4

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=95.00  E-value=0.053  Score=49.41  Aligned_cols=103  Identities=17%  Similarity=0.194  Sum_probs=62.0

Q ss_pred             CCeEEeccCCCcH----HHHHHHHh-------CCEEEEEeCCHHHHHHHHHHHHH-----cCC-----------------
Q psy15742        190 SDVVIDGFCGCGG----NTIQFAAV-------CQKVISIDIDPAKLRLAQHNASV-----YGV-----------------  236 (342)
Q Consensus       190 ~~~vLDlgcGtG~----~~~~~a~~-------~~~v~gvD~s~~~l~~a~~n~~~-----~gl-----------------  236 (342)
                      .-+|+-.||+||-    +++.+.+.       ..+|+|.|+|..+++.|+.-.-.     .++                 
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5689999999996    34444332       36899999999999999742211     111                 


Q ss_pred             ------CCcEEEEEccccccC-CCCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        237 ------SHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       237 ------~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                            ...|.|.+.|+.+-. ..+.||+|+|   +.-.-|-....          -...+..+...+.+++++++
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC---RNVLIYFd~~~----------q~~il~~f~~~L~~gG~Lfl  239 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC---RNVLIYFDEET----------QERILRRFADSLKPGGLLFL  239 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEE---cceEEeeCHHH----------HHHHHHHHHHHhCCCCEEEE
Confidence                  123566666766554 4557999998   22211111000          11134445666777777776

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=94.81  E-value=0.12  Score=43.54  Aligned_cols=85  Identities=18%  Similarity=0.212  Sum_probs=53.5

Q ss_pred             CCCCC-HHHHHHHHHHhcCCCCeEEeccCCCcHHHHHH-HHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q psy15742        171 WYSVT-PEKVAQHIASRCKASDVVIDGFCGCGGNTIQF-AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF  248 (342)
Q Consensus       171 ~~~~~-~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~-a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~  248 (342)
                      ||... .+.+++.+.+...++.+|+-+||=|-...+.- .....+++-.|.|..--        ..|  ++ +|+.-|..
T Consensus         6 wYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~--------~~~--~~-~F~fyD~~   74 (162)
T PF10237_consen    6 WYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFE--------QFG--GD-EFVFYDYN   74 (162)
T ss_pred             ccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHH--------hcC--Cc-ceEECCCC
Confidence            44432 24445555555556779998888777666555 11367899999997422        222  23 46666655


Q ss_pred             ccC--C---CCCccEEEEcCCCC
Q psy15742        249 ALA--P---SLQGDVVFLSPPWG  266 (342)
Q Consensus       249 ~~~--~---~~~~D~Ii~nPP~~  266 (342)
                      +..  +   .++||+|++||||-
T Consensus        75 ~p~~~~~~l~~~~d~vv~DPPFl   97 (162)
T PF10237_consen   75 EPEELPEELKGKFDVVVIDPPFL   97 (162)
T ss_pred             ChhhhhhhcCCCceEEEECCCCC
Confidence            432  1   35899999999994

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>KOG4589|consensus

Probab=94.76  E-value=0.072  Score=45.45  Aligned_cols=66  Identities=21%  Similarity=0.169  Sum_probs=48.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-ccccc---------CCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG-DFFAL---------APS  253 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~-D~~~~---------~~~  253 (342)
                      ++++.+|||+||..|..+.-+-+.   ...|.|||+-+-        .   .. ..+.++++ |+.+.         +++
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~---p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------E---PP-EGATIIQGNDVTDPETYRKIFEALPN  134 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------c---CC-CCcccccccccCCHHHHHHHHHhCCC
Confidence            467999999999999999887776   468999998541        1   11 24566666 66543         366


Q ss_pred             CCccEEEEcCC
Q psy15742        254 LQGDVVFLSPP  264 (342)
Q Consensus       254 ~~~D~Ii~nPP  264 (342)
                      ...|+|++|-.
T Consensus       135 r~VdvVlSDMa  145 (232)
T KOG4589|consen  135 RPVDVVLSDMA  145 (232)
T ss_pred             CcccEEEeccC
Confidence            78999999843

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=94.72  E-value=0.1  Score=42.64  Aligned_cols=55  Identities=16%  Similarity=0.224  Sum_probs=41.1

Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcCCCCC
Q psy15742        213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPPWGG  267 (342)
Q Consensus       213 ~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nPP~~~  267 (342)
                      +|+|+|+.+++++.++++++..++.+++++++.+-.++.   +.+++|+++.|-=|-.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLP   58 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLP   58 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-C
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCC
Confidence            589999999999999999999999888999998766553   3458999999854433

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG3115|consensus

Probab=94.71  E-value=0.045  Score=47.26  Aligned_cols=63  Identities=14%  Similarity=0.225  Sum_probs=51.0

Q ss_pred             CeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCC------CCcEEEEEccccccCCC
Q psy15742        191 DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGV------SHKIQFIQGDFFALAPS  253 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl------~~~i~~~~~D~~~~~~~  253 (342)
                      -.+.|+|||-|++.+.++..  ..-+.|.|+--...++.+++++..+-      -.++.+.+.+++.+.++
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn  132 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPN  132 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccc
Confidence            46999999999999999987  56789999988888888888876541      24678888888887654

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=94.67  E-value=0.059  Score=48.65  Aligned_cols=51  Identities=22%  Similarity=0.345  Sum_probs=36.4

Q ss_pred             HHHHHHHHhcC--CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHH
Q psy15742        178 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ  228 (342)
Q Consensus       178 ~~~~~i~~~~~--~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~  228 (342)
                      .++..|.+.++  +..+++|++||+|.++..+...+..|+.-|+++..+...+
T Consensus         7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~   59 (260)
T PF02086_consen    7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK   59 (260)
T ss_dssp             GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence            34566666666  5789999999999999998778899999999998776665

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.38  E-value=0.034  Score=42.96  Aligned_cols=32  Identities=19%  Similarity=0.050  Sum_probs=28.0

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCH
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP  221 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~  221 (342)
                      ...++|+|||.|.+.--+.+.|..-.|+|.-.
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~   90 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDARR   90 (112)
T ss_pred             CCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence            44799999999999988888899999999754

; GO: 0008168 methyltransferase activity

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=94.24  E-value=0.24  Score=45.17  Aligned_cols=40  Identities=15%  Similarity=-0.009  Sum_probs=36.0

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH  229 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~  229 (342)
                      +.+||-+|||.|.++..+|..|..+.|.|.|--|+-..+-
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~f   96 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNF   96 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHH
Confidence            5689999999999999999999999999999999765544

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.44  E-value=0.51  Score=40.89  Aligned_cols=75  Identities=15%  Similarity=0.110  Sum_probs=58.8

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----CCCccEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVF  260 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----~~~~D~Ii  260 (342)
                      +++|.+||=+|+.+|+..-+.+.-  ...++|||.|+...+..-.-++..   +|+-.+.+|+.....    -...|+|+
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDviy  150 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDVIY  150 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccEEE
Confidence            457999999999999999999886  367999999998876665555443   478889999976431    13699999


Q ss_pred             EcCC
Q psy15742        261 LSPP  264 (342)
Q Consensus       261 ~nPP  264 (342)
                      .|-.
T Consensus       151 ~DVA  154 (231)
T COG1889         151 QDVA  154 (231)
T ss_pred             EecC
Confidence            9865

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=93.30  E-value=0.22  Score=43.45  Aligned_cols=73  Identities=30%  Similarity=0.367  Sum_probs=41.6

Q ss_pred             CCeEEeccCCCcHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~------~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---------~~~  254 (342)
                      ++.|+++|.-.|+.++.+|..      ..+|+|||++......  ...+.+.+.+++++++||..+..         ...
T Consensus        33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~  110 (206)
T PF04989_consen   33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP  110 (206)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred             CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence            569999999999999998863      3799999996543322  22233445569999999987642         122


Q ss_pred             CccEEEEcCC
Q psy15742        255 QGDVVFLSPP  264 (342)
Q Consensus       255 ~~D~Ii~nPP  264 (342)
                      ...+|+.|--
T Consensus       111 ~~vlVilDs~  120 (206)
T PF04989_consen  111 HPVLVILDSS  120 (206)
T ss_dssp             SSEEEEESS-
T ss_pred             CceEEEECCC
Confidence            4557777644

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG1709|consensus

Probab=92.90  E-value=0.77  Score=40.23  Aligned_cols=73  Identities=12%  Similarity=0.122  Sum_probs=54.9

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---CCCCCccEEEEc
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGDVVFLS  262 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---~~~~~~D~Ii~n  262 (342)
                      .+|.+||++|-|.|...-.+.+. -..=+-+|..+..++..+++.-..  .+++.+..+-+.+.   ++++.||-|+-|
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yD  176 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYD  176 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEee
Confidence            45889999999999988877665 334466899999998877765332  24777877765554   466789999987

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=92.77  E-value=0.6  Score=41.68  Aligned_cols=79  Identities=16%  Similarity=0.342  Sum_probs=64.5

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-----CCCCCccEEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-----APSLQGDVVFL  261 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~-----~~~~~~D~Ii~  261 (342)
                      ++++.. +..+||+-.++..+.+..-+..++|+.+.-....+.|+.  + +.++++.++|-+..     ++..+=-+|++
T Consensus        87 lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~--~-d~~vrv~~~DG~~~l~a~LPP~erRglVLI  162 (279)
T COG2961          87 LNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFA--G-DRRVRVLRGDGFLALKAHLPPKERRGLVLI  162 (279)
T ss_pred             hCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhC--C-CcceEEEecCcHHHHhhhCCCCCcceEEEe
Confidence            445544 899999999999998888899999999999999999986  3 24899999998754     34456789999


Q ss_pred             cCCCCCCc
Q psy15742        262 SPPWGGPE  269 (342)
Q Consensus       262 nPP~~~~~  269 (342)
                      ||||...+
T Consensus       163 DPPfE~~~  170 (279)
T COG2961         163 DPPFELKD  170 (279)
T ss_pred             CCCccccc
Confidence            99998764

>KOG3178|consensus

Probab=92.71  E-value=0.6  Score=43.78  Aligned_cols=65  Identities=22%  Similarity=0.362  Sum_probs=54.8

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  261 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~  261 (342)
                      -...+|+|.|.|..+-.+.....+|-+++.+..-+-.++.++. .|    |+.+-+|.++-.|.  -|+|++
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P~--~daI~m  242 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTPK--GDAIWM  242 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC----cceecccccccCCC--cCeEEE
Confidence            3689999999999999999887789999999999998888875 44    67888999877554  568887

>KOG2360|consensus

Probab=92.69  E-value=0.28  Score=46.46  Aligned_cols=84  Identities=23%  Similarity=0.386  Sum_probs=69.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CC--CCccEEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PS--LQGDVVFL  261 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~--~~~D~Ii~  261 (342)
                      .+|.+|+|.+|-.|.-+.++|.-   -.++.|+|.+....+..+.-++..|.+ .++.+.+|+...+ +.  ...-.|++
T Consensus       212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t~~~~~~~~v~~iL~  290 (413)
T KOG2360|consen  212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNTATPEKFRDVTYILV  290 (413)
T ss_pred             CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCCCCcccccceeEEEe
Confidence            46789999999999999998874   468999999999999999999999984 6788899998853 21  24678999


Q ss_pred             cCCCCCCcccc
Q psy15742        262 SPPWGGPEYAR  272 (342)
Q Consensus       262 nPP~~~~~~~~  272 (342)
                      ||+..|.....
T Consensus       291 DpscSgSgm~~  301 (413)
T KOG2360|consen  291 DPSCSGSGMVS  301 (413)
T ss_pred             CCCCCCCcccc
Confidence            99999875444

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=92.62  E-value=1.1  Score=39.30  Aligned_cols=74  Identities=18%  Similarity=0.251  Sum_probs=53.4

Q ss_pred             CCeEEeccCCCc----HHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc-cccCCC-CCccEEEE
Q psy15742        190 SDVVIDGFCGCG----GNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF-FALAPS-LQGDVVFL  261 (342)
Q Consensus       190 ~~~vLDlgcGtG----~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~-~~~~~~-~~~D~Ii~  261 (342)
                      ...+++..|+-|    ++++.+|.+  |.++++|-.+++.+...++.+...|+.+.++|+.++. .+..+. ...|+++.
T Consensus        42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV  121 (218)
T PF07279_consen   42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV  121 (218)
T ss_pred             ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence            346888866543    233444433  8899999999999988999998888876689999885 344433 36899998


Q ss_pred             cC
Q psy15742        262 SP  263 (342)
Q Consensus       262 nP  263 (342)
                      |=
T Consensus       122 Dc  123 (218)
T PF07279_consen  122 DC  123 (218)
T ss_pred             eC
Confidence            63

The function of this family is unknown.

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=91.71  E-value=0.32  Score=43.72  Aligned_cols=73  Identities=11%  Similarity=0.282  Sum_probs=45.4

Q ss_pred             EeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-----CCCCCccEEEEcCCCCCC
Q psy15742        194 IDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-----APSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       194 LDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~-----~~~~~~D~Ii~nPP~~~~  268 (342)
                      +..+.|+-.++..+.+..-+.+.+|+.++-.+..+.|+...   .++++.+.|.++.     ++..+=-+|++||||...
T Consensus        62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~  138 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQK  138 (245)
T ss_dssp             --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----ST
T ss_pred             cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCc
Confidence            67888888888888888889999999999999999887642   4899999998874     344567799999999876


Q ss_pred             c
Q psy15742        269 E  269 (342)
Q Consensus       269 ~  269 (342)
                      +
T Consensus       139 ~  139 (245)
T PF04378_consen  139 D  139 (245)
T ss_dssp             T
T ss_pred             h
Confidence            4

; PDB: 2OO3_A.

>KOG2651|consensus

Probab=91.52  E-value=0.57  Score=44.35  Aligned_cols=41  Identities=22%  Similarity=0.092  Sum_probs=34.9

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQH  229 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~  229 (342)
                      +-+.++|+|+|-|.++..++-+ +.+|.|||-|....+.|++
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            4468999999999999999876 9999999999777666654

>PRK11524 putative methyltransferase; Provisional

Probab=91.41  E-value=0.11  Score=47.93  Aligned_cols=30  Identities=30%  Similarity=0.520  Sum_probs=24.9

Q ss_pred             CcEEEEEccccccC---CCCCccEEEEcCCCCC
Q psy15742        238 HKIQFIQGDFFALA---PSLQGDVVFLSPPWGG  267 (342)
Q Consensus       238 ~~i~~~~~D~~~~~---~~~~~D~Ii~nPP~~~  267 (342)
                      ++.+++++|+.+.+   +++++|+|++||||..
T Consensus         7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~   39 (284)
T PRK11524          7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNI   39 (284)
T ss_pred             CCCEEEeccHHHHHHhcccCcccEEEECCCccc
Confidence            35689999999863   5678999999999974

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=91.34  E-value=0.57  Score=42.23  Aligned_cols=71  Identities=18%  Similarity=0.151  Sum_probs=57.8

Q ss_pred             HhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEcC
Q psy15742        185 SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSP  263 (342)
Q Consensus       185 ~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nP  263 (342)
                      +++.+|....|+|+..|+.+..+.+++..|++||.-+-     ..++-..   +.++-...|-+++-| ....|..+||-
T Consensus       207 ~rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~m-----a~sL~dt---g~v~h~r~DGfk~~P~r~~idWmVCDm  278 (358)
T COG2933         207 KRLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPM-----AQSLMDT---GQVTHLREDGFKFRPTRSNIDWMVCDM  278 (358)
T ss_pred             hhhcCCceeeecccCCCccchhhhhcceEEEEeccchh-----hhhhhcc---cceeeeeccCcccccCCCCCceEEeeh
Confidence            45678999999999999999999999999999997652     2233333   368889999999976 55899999984

>KOG3987|consensus

Probab=91.17  E-value=0.059  Score=46.67  Aligned_cols=64  Identities=11%  Similarity=0.110  Sum_probs=48.0

Q ss_pred             ccccCCCCCCHHHHHHHHHHhc----CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Q psy15742        166 VVIDGWYSVTPEKVAQHIASRC----KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH  229 (342)
Q Consensus       166 ~~~~~~~~~~~e~~~~~i~~~~----~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~  229 (342)
                      .+.++.|-.++++..+.+...-    ..+.++||+|+|.|-++..++....+|++.|.|..|....+.
T Consensus        85 lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~k  152 (288)
T KOG3987|consen   85 LGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK  152 (288)
T ss_pred             cccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhh
Confidence            3445556666666666655331    135689999999999999998887889999999999876654

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=91.13  E-value=0.4  Score=43.56  Aligned_cols=59  Identities=22%  Similarity=0.205  Sum_probs=39.0

Q ss_pred             CeEEeccCCCc--HHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q psy15742        191 DVVIDGFCGCG--GNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  250 (342)
Q Consensus       191 ~~vLDlgcGtG--~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~  250 (342)
                      ..+||+|||--  ...-+.|+.   ..+|+-||.+|-.+..++.-+..+.- +...++++|+.+.
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p  133 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDP  133 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-H
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCH
Confidence            58999999943  355666664   78999999999999999988765432 2489999999875

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK13699 putative methylase; Provisional

Probab=90.44  E-value=0.13  Score=45.74  Aligned_cols=27  Identities=26%  Similarity=0.550  Sum_probs=23.0

Q ss_pred             EEEEEccccccC---CCCCccEEEEcCCCC
Q psy15742        240 IQFIQGDFFALA---PSLQGDVVFLSPPWG  266 (342)
Q Consensus       240 i~~~~~D~~~~~---~~~~~D~Ii~nPP~~  266 (342)
                      ++++++|+.+.+   ++.++|+|+.||||.
T Consensus         2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~   31 (227)
T PRK13699          2 SRFILGNCIDVMARFPDNAVDFILTDPPYL   31 (227)
T ss_pred             CeEEechHHHHHHhCCccccceEEeCCCcc
Confidence            368899998763   678999999999996

>KOG2352|consensus

Probab=90.26  E-value=3  Score=40.92  Aligned_cols=78  Identities=17%  Similarity=0.151  Sum_probs=58.4

Q ss_pred             HHHhcCCCC-eEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEE
Q psy15742        183 IASRCKASD-VVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVV  259 (342)
Q Consensus       183 i~~~~~~~~-~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~I  259 (342)
                      +..++.+.. +++-+|||.-.++..+-+. ...|+.+|+|+-.++.....-...  ..-.++...|+.... ++.+||+|
T Consensus        41 i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedESFdiV  118 (482)
T KOG2352|consen   41 IMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDESFDIV  118 (482)
T ss_pred             HHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCcceeEE
Confidence            334444555 8999999999999888776 578999999999998776543221  135788999988775 66688888


Q ss_pred             EEc
Q psy15742        260 FLS  262 (342)
Q Consensus       260 i~n  262 (342)
                      +.=
T Consensus       119 Idk  121 (482)
T KOG2352|consen  119 IDK  121 (482)
T ss_pred             Eec
Confidence            763

>KOG3924|consensus

Probab=89.99  E-value=0.52  Score=44.84  Aligned_cols=88  Identities=24%  Similarity=0.365  Sum_probs=60.9

Q ss_pred             HHHHHHHHH-hcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc-------CC-CCcEEEEEc
Q psy15742        177 EKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY-------GV-SHKIQFIQG  245 (342)
Q Consensus       177 e~~~~~i~~-~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~-------gl-~~~i~~~~~  245 (342)
                      +++.+.+.+ .+++++.+.|+|.|.|.....+|..  ...-+|+++....-+.|..|...+       |- .+.++.+++
T Consensus       179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~g  258 (419)
T KOG3924|consen  179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHG  258 (419)
T ss_pred             HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccc
Confidence            444444443 3568899999999999999888876  456788888777766666665433       33 346888899


Q ss_pred             cccccC----CCCCccEEEEcCC
Q psy15742        246 DFFALA----PSLQGDVVFLSPP  264 (342)
Q Consensus       246 D~~~~~----~~~~~D~Ii~nPP  264 (342)
                      ++.+..    -....++|++|--
T Consensus       259 sf~~~~~v~eI~~eatvi~vNN~  281 (419)
T KOG3924|consen  259 SFLDPKRVTEIQTEATVIFVNNV  281 (419)
T ss_pred             ccCCHHHHHHHhhcceEEEEecc
Confidence            887642    1236788888643

>KOG2793|consensus

Probab=89.65  E-value=1.7  Score=39.12  Aligned_cols=77  Identities=12%  Similarity=-0.023  Sum_probs=45.7

Q ss_pred             CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHc-----CCCCcEEEEEccccccCC----CCC-ccE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVY-----GVSHKIQFIQGDFFALAP----SLQ-GDV  258 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~-----gl~~~i~~~~~D~~~~~~----~~~-~D~  258 (342)
                      ...||++|+|||..++.+|.. +..|.-.|... .+.....|...+     ++.+.+....-++.+.+.    ... +|+
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl  165 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL  165 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence            457999999999999999985 77777777644 444444443333     222244444444433321    113 888


Q ss_pred             EEE-cCCCCC
Q psy15742        259 VFL-SPPWGG  267 (342)
Q Consensus       259 Ii~-nPP~~~  267 (342)
                      |++ |+=|..
T Consensus       166 ilasDvvy~~  175 (248)
T KOG2793|consen  166 ILASDVVYEE  175 (248)
T ss_pred             EEEeeeeecC
Confidence            885 444433

>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=88.85  E-value=0.93  Score=41.47  Aligned_cols=91  Identities=19%  Similarity=0.215  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCc-cEEEEcCCCCCCcccc--ccccccccCcCCCCchhhhHhh
Q psy15742        219 IDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQG-DVVFLSPPWGGPEYAR--SSFSIDNIFPEQGGGRRLFQVA  294 (342)
Q Consensus       219 ~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~-D~Ii~nPP~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  294 (342)
                      ...+.+..+.+.++      ++++.++|+.+... ..+- |+|++||||.+.+-..  ....-..+.-.  ....+.+.+
T Consensus       142 ~~~~~L~~~a~~l~------~~~i~~~df~~v~~~a~~~~dfvY~DPPY~~~s~t~~f~~Y~~~~f~~~--~~~~La~~~  213 (274)
T COG0338         142 PEEENLKLFAEKLK------NATIENGDFEEVLADADSGDDFVYCDPPYLPLSATSNFTAYGGNGFTED--QHLRLAEVL  213 (274)
T ss_pred             chHHHHHHHHHHHh------cCeEEcCCHHHHHhhccCCCcEEEeCCCCCccccccccccccCCCCChH--HHHHHHHHH
Confidence            34455666666654      58999999998864 2344 8999999999864321  11111111111  344667777


Q ss_pred             hcc-CCCceeecCCCCCHHHHHHh
Q psy15742        295 RGI-SPNVGYYLPRTSDVFEIFHD  317 (342)
Q Consensus       295 ~~~-~~~~~~~l~~~~~~~~l~~~  317 (342)
                      ..+ ....+.++-+++.......+
T Consensus       214 ~~l~~~~~i~~~~sn~~~~~~~~l  237 (274)
T COG0338         214 KELEGKRGISVLDSNSDTEETREL  237 (274)
T ss_pred             HhccccceEEEecCccchHHHHHH
Confidence            777 66677777666654444443

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=88.40  E-value=1.3  Score=35.46  Aligned_cols=71  Identities=21%  Similarity=0.304  Sum_probs=37.0

Q ss_pred             HHHHhcCCCCeEEeccCCCcH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccE
Q psy15742        182 HIASRCKASDVVIDGFCGCGG-NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDV  258 (342)
Q Consensus       182 ~i~~~~~~~~~vLDlgcGtG~-~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~  258 (342)
                      .+....+.+ +++++|-|.=. .+..+++.|..|+++|+++.       ++. .    .+.++..|+++...+  ...|+
T Consensus         7 ~ia~~~~~~-kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-~----g~~~v~DDif~P~l~iY~~a~l   73 (127)
T PF03686_consen    7 YIARLNNYG-KIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-E----GVNFVVDDIFNPNLEIYEGADL   73 (127)
T ss_dssp             HHHHHS-SS-EEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEE
T ss_pred             HHHHhCCCC-cEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-c----CcceeeecccCCCHHHhcCCcE
Confidence            333333334 99999999655 45555666999999999986       332 3    456899999875311  36899


Q ss_pred             EE-EcCCC
Q psy15742        259 VF-LSPPW  265 (342)
Q Consensus       259 Ii-~nPP~  265 (342)
                      |. .+||-
T Consensus        74 IYSiRPP~   81 (127)
T PF03686_consen   74 IYSIRPPP   81 (127)
T ss_dssp             EEEES--T
T ss_pred             EEEeCCCh
Confidence            98 57883

; PDB: 2K4M_A.

>KOG2920|consensus

Probab=88.21  E-value=0.46  Score=43.30  Aligned_cols=36  Identities=19%  Similarity=0.102  Sum_probs=32.6

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHH
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKL  224 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l  224 (342)
                      .+++|||+|||+|..++.+...+ ..+...|.|...+
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL  152 (282)
T ss_pred             cCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence            58899999999999999998885 8899999998887

>KOG0919|consensus

Probab=87.59  E-value=0.33  Score=43.04  Aligned_cols=82  Identities=20%  Similarity=0.264  Sum_probs=53.2

Q ss_pred             CCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEEEc
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLS  262 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii~n  262 (342)
                      .-+|+++..|.|+.-..+-..   +.-|.++|+++.+-+.-..|...+ +     ....|+..+.    ...++|.+.++
T Consensus         3 pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~-L-----~k~~~I~~lt~kefd~l~~~m~lMS   76 (338)
T KOG0919|consen    3 PLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSN-L-----VKTRNIQSLTVKEFDKLQANMLLMS   76 (338)
T ss_pred             ceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccc-h-----hhccccceeeHhhhhhcccceEeeC
Confidence            458999999999987666543   567889999998887777763211 1     1111222111    23478999999


Q ss_pred             CCCCCCccccccccc
Q psy15742        263 PPWGGPEYARSSFSI  277 (342)
Q Consensus       263 PP~~~~~~~~~~~~~  277 (342)
                      ||+...+..+...|+
T Consensus        77 PpCQPfTRiG~q~D~   91 (338)
T KOG0919|consen   77 PPCQPFTRIGLQRDT   91 (338)
T ss_pred             CCCCchhhhcccccc
Confidence            998876555544443

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=87.58  E-value=4.8  Score=33.93  Aligned_cols=133  Identities=12%  Similarity=0.121  Sum_probs=70.5

Q ss_pred             CCCcHH--HHHHHHh---CCEEEE--EeCCHHHHHH---HHHHHHHcCCCCcEEE-EEccccccC-----CCCCccEEEE
Q psy15742        198 CGCGGN--TIQFAAV---CQKVIS--IDIDPAKLRL---AQHNASVYGVSHKIQF-IQGDFFALA-----PSLQGDVVFL  261 (342)
Q Consensus       198 cGtG~~--~~~~a~~---~~~v~g--vD~s~~~l~~---a~~n~~~~gl~~~i~~-~~~D~~~~~-----~~~~~D~Ii~  261 (342)
                      +|-|.+  +..+++.   +.++++  .|...+..+.   +..|++...-. .+.+ ..-|+.++.     ....||.|+.
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~-g~~V~~~VDat~l~~~~~~~~~~FDrIiF   81 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL-GVTVLHGVDATKLHKHFRLKNQRFDRIIF   81 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc-CCccccCCCCCcccccccccCCcCCEEEE
Confidence            455555  4455554   345554  4544444433   33566544211 2333 344666653     3458999999


Q ss_pred             cCCCCCCccccccccc---cccCcCCCCchhhhHhhhccCCCceeec------C-CCCCHHHHHHhhCCCcEEEEecccC
Q psy15742        262 SPPWGGPEYARSSFSI---DNIFPEQGGGRRLFQVARGISPNVGYYL------P-RTSDVFEIFHDSGKKGSFISLTGRQ  331 (342)
Q Consensus       262 nPP~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~-~~~~~~~l~~~~~~~~~i~~i~~~~  331 (342)
                      |=|..|.........+   +.++..     .+..+...+.+++.+.+      | ..+.+..++..  .++.+....+++
T Consensus        82 NFPH~G~~~~~~~~~i~~nr~Ll~~-----Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~--~gl~l~~~~~F~  154 (166)
T PF10354_consen   82 NFPHVGGGSEDGKRNIRLNRELLRG-----FFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAE--AGLVLVRKVPFD  154 (166)
T ss_pred             eCCCCCCCccchhHHHHHHHHHHHH-----HHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHh--cCCEEEEEecCC
Confidence            9998873221112222   223332     33344444555444444      3 44555555544  678888888888


Q ss_pred             --CCCCCCc
Q psy15742        332 --MFSPSQD  338 (342)
Q Consensus       332 --~fp~t~h  338 (342)
                        .||.-.|
T Consensus       155 ~~~ypgY~~  163 (166)
T PF10354_consen  155 PSDYPGYEH  163 (166)
T ss_pred             HHHCCCccc
Confidence              4887655

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=87.52  E-value=1.5  Score=33.96  Aligned_cols=60  Identities=22%  Similarity=0.267  Sum_probs=43.4

Q ss_pred             cCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEEcCC
Q psy15742        197 FCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPP  264 (342)
Q Consensus       197 gcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~nPP  264 (342)
                      =||.|.++..+++.    +..|+.+|.+++.++.++..        .+.++.+|..+..     .-.++|.+++.-+
T Consensus         3 I~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    3 IIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             EEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence            37888999888774    45899999999998777643        2579999998753     2237888887544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG0822|consensus

Probab=87.48  E-value=1.2  Score=44.01  Aligned_cols=71  Identities=14%  Similarity=0.130  Sum_probs=52.9

Q ss_pred             CeEEeccCCCcHHHHHHHH---h---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC-CCccEEEEc
Q psy15742        191 DVVIDGFCGCGGNTIQFAA---V---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-LQGDVVFLS  262 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~---~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~-~~~D~Ii~n  262 (342)
                      .+|+-+|+|-|-+.-...+   .   -.++++||.+|.++-..+. ....+-+++++++.+|+..+.+. .+.|++++.
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE  446 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSE  446 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCchhhccchHHH
Confidence            3678999999987655433   2   4678999999999866554 33334456999999999999864 678888874

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=86.97  E-value=1.9  Score=38.84  Aligned_cols=43  Identities=12%  Similarity=0.020  Sum_probs=34.8

Q ss_pred             CeEEeccCCCcHHHHHHHHh----------CCEEEEEeCCHHHHHHHHHHHHH
Q psy15742        191 DVVIDGFCGCGGNTIQFAAV----------CQKVISIDIDPAKLRLAQHNASV  233 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~----------~~~v~gvD~s~~~l~~a~~n~~~  233 (342)
                      -+|+|+|+|+|.++..+.+.          ..+++-||.|+.+.+.-++++..
T Consensus        20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            58999999999999888764          24799999999998888888765

; PDB: 4F3N_A 1ZKD_B.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=86.42  E-value=1  Score=39.53  Aligned_cols=55  Identities=22%  Similarity=0.149  Sum_probs=40.6

Q ss_pred             CeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEEEc
Q psy15742        191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLS  262 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii~n  262 (342)
                      -++||+||=+..+.+... .-..|+.||+++.                .-.+.+.|+++.+    +.++||+|.+.
T Consensus        53 lrlLEVGals~~N~~s~~-~~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~S  111 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTS-GWFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLS  111 (219)
T ss_pred             ceEEeecccCCCCccccc-CceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEE
Confidence            589999999777655432 2356999999861                3457788998875    34689999885

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=86.35  E-value=1.9  Score=35.49  Aligned_cols=53  Identities=15%  Similarity=0.236  Sum_probs=34.5

Q ss_pred             eccCCCc--HHHHHHH--Hh--CCEEEEEeCCHHHHHHHHHH--HHHcCCCCcEEEEEccc
Q psy15742        195 DGFCGCG--GNTIQFA--AV--CQKVISIDIDPAKLRLAQHN--ASVYGVSHKIQFIQGDF  247 (342)
Q Consensus       195 DlgcGtG--~~~~~~a--~~--~~~v~gvD~s~~~l~~a~~n--~~~~gl~~~i~~~~~D~  247 (342)
                      |+|++.|  .....+.  ..  +.+|+++|.++..++..+.|  +..+...+.+++.....
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~   61 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV   61 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence            8999999  6666554  22  67899999999999999999  77665433466665444

; PDB: 2PY6_A.

>KOG2798|consensus

Probab=85.89  E-value=2.3  Score=39.48  Aligned_cols=39  Identities=13%  Similarity=-0.003  Sum_probs=34.2

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHH
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ  228 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~  228 (342)
                      .-+||-+|||.|.++..+|..|..+-|-|.|--|+-...
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~  189 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSS  189 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHH
Confidence            458999999999999999999999999999988875443

>KOG1201|consensus

Probab=84.26  E-value=4.9  Score=37.07  Aligned_cols=71  Identities=15%  Similarity=0.122  Sum_probs=57.1

Q ss_pred             CCCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        189 ASDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       189 ~~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      .|..||=-|.|.|.   ++.++|+.+..+...|++....+...+.++..|   ++....+|+.+..           +-+
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~G  113 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEVG  113 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            37788888888875   677788888899999999999998888888776   6888888987652           235


Q ss_pred             CccEEEEc
Q psy15742        255 QGDVVFLS  262 (342)
Q Consensus       255 ~~D~Ii~n  262 (342)
                      ..|++|-|
T Consensus       114 ~V~ILVNN  121 (300)
T KOG1201|consen  114 DVDILVNN  121 (300)
T ss_pred             CceEEEec
Confidence            78888877

>KOG3350|consensus

Probab=84.06  E-value=7.3  Score=33.12  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=45.3

Q ss_pred             HHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----CCC
Q psy15742        184 ASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----SLQ  255 (342)
Q Consensus       184 ~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----~~~  255 (342)
                      ......+.+|--+.|-|=.+-...-..   ..+|+-.+.+.        +...+|    -+|+.-|......     ...
T Consensus        68 v~~s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDk--------RFe~yg----~eFvfYDyN~p~dlp~~lk~~  135 (217)
T KOG3350|consen   68 VEASGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDK--------RFELYG----TEFVFYDYNCPLDLPDELKAH  135 (217)
T ss_pred             HhhcccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehh--------hHHhcc----ceeEEeccCCCCCCHHHHHhc
Confidence            333445667777777664411111111   35788888875        344455    3577777765431     247


Q ss_pred             ccEEEEcCCCCCCcc
Q psy15742        256 GDVVFLSPPWGGPEY  270 (342)
Q Consensus       256 ~D~Ii~nPP~~~~~~  270 (342)
                      ||+|++||||-....
T Consensus       136 fdiivaDPPfL~~eC  150 (217)
T KOG3350|consen  136 FDIIVADPPFLSEEC  150 (217)
T ss_pred             ccEEEeCCccccchh
Confidence            999999999987654

>KOG3201|consensus

Probab=83.87  E-value=1.1  Score=37.59  Aligned_cols=72  Identities=11%  Similarity=0.023  Sum_probs=46.5

Q ss_pred             CCeEEeccCC-CcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEEcccccc---CCCCCccEEEE
Q psy15742        190 SDVVIDGFCG-CGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS--HKIQFIQGDFFAL---APSLQGDVVFL  261 (342)
Q Consensus       190 ~~~vLDlgcG-tG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~--~~i~~~~~D~~~~---~~~~~~D~Ii~  261 (342)
                      |.+|+++|.| +|..++.+|..  ...|.-.|-++.+++..++-...|-.+  ..+....-+....   .....||+|++
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla  109 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA  109 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence            6789999999 55556666655  578999999999998888776555221  1222222222111   12348999997

>PRK06194 hypothetical protein; Provisional

Probab=83.74  E-value=7.2  Score=35.33  Aligned_cols=75  Identities=17%  Similarity=0.164  Sum_probs=50.8

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      +.++| +..|+|+++..+++    .|.+|+.+|.+...++.....+...+.  ++.++.+|+.+..           ..+
T Consensus         6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~~~~~~~g   82 (287)
T PRK06194          6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA--EVLGVRTDVSDAAQVEALADAALERFG   82 (287)
T ss_pred             CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            45676 55566777666654    488999999998777666555544343  6788999987642           113


Q ss_pred             CccEEEEcCCCCC
Q psy15742        255 QGDVVFLSPPWGG  267 (342)
Q Consensus       255 ~~D~Ii~nPP~~~  267 (342)
                      ..|+|+.+.-...
T Consensus        83 ~id~vi~~Ag~~~   95 (287)
T PRK06194         83 AVHLLFNNAGVGA   95 (287)
T ss_pred             CCCEEEECCCCCC
Confidence            5799999876543

>PTZ00357 methyltransferase; Provisional

Probab=83.60  E-value=2.8  Score=42.93  Aligned_cols=71  Identities=13%  Similarity=0.128  Sum_probs=48.9

Q ss_pred             eEEeccCCCcHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHH---HHcC-----CCCcEEEEEccccccCCC----
Q psy15742        192 VVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNA---SVYG-----VSHKIQFIQGDFFALAPS----  253 (342)
Q Consensus       192 ~vLDlgcGtG~~~~~~a~~------~~~v~gvD~s~~~l~~a~~n~---~~~g-----l~~~i~~~~~D~~~~~~~----  253 (342)
                      .|+-+|+|-|-+.-...+.      ..+|++||.++.++.....+.   ....     ..+.++++..|+..+...    
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            5899999999986555432      358999999977655554443   2221     124699999999998522    


Q ss_pred             --------CCccEEEEc
Q psy15742        254 --------LQGDVVFLS  262 (342)
Q Consensus       254 --------~~~D~Ii~n  262 (342)
                              +++|+||+.
T Consensus       783 s~~~P~~~gKaDIVVSE  799 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSE  799 (1072)
T ss_pred             cccccccccccceehHh
Confidence                    268888873

>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=83.53  E-value=1.1  Score=40.29  Aligned_cols=38  Identities=21%  Similarity=0.305  Sum_probs=31.0

Q ss_pred             HHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCC
Q psy15742        183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDID  220 (342)
Q Consensus       183 i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s  220 (342)
                      +......+..+.|+++|||..+..+-+.|..|++-|+-
T Consensus        21 ~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle   58 (330)
T COG3392          21 VKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLE   58 (330)
T ss_pred             HhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHH
Confidence            33444567789999999999999999889888888863

>KOG0024|consensus

Probab=83.42  E-value=2.3  Score=39.58  Aligned_cols=43  Identities=26%  Similarity=0.196  Sum_probs=37.1

Q ss_pred             cCCCCeEEeccCC-CcHHHHHHHHh--CCEEEEEeCCHHHHHHHHH
Q psy15742        187 CKASDVVIDGFCG-CGGNTIQFAAV--CQKVISIDIDPAKLRLAQH  229 (342)
Q Consensus       187 ~~~~~~vLDlgcG-tG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~  229 (342)
                      ++.|.+||=+|+| .|..+...|+.  +.+|+.+|+++..++.|++
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            4579999999999 47777777775  6899999999999999998

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=83.41  E-value=0.64  Score=36.05  Aligned_cols=15  Identities=33%  Similarity=0.392  Sum_probs=13.4

Q ss_pred             CccEEEEcCCCCCCc
Q psy15742        255 QGDVVFLSPPWGGPE  269 (342)
Q Consensus       255 ~~D~Ii~nPP~~~~~  269 (342)
                      +||+|+.||||....
T Consensus         2 kFD~VIGNPPY~~~~   16 (106)
T PF07669_consen    2 KFDVVIGNPPYIKIK   16 (106)
T ss_pred             CcCEEEECCCChhhc
Confidence            599999999999865

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=82.80  E-value=9.8  Score=33.77  Aligned_cols=74  Identities=18%  Similarity=0.053  Sum_probs=52.7

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      ++++|=.| |+|.++..+++    .|.+|+.++.++..++.....++..|.  ++.++.+|+.+..           ..+
T Consensus        10 ~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   86 (255)
T PRK07523         10 GRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL--SAHALAFDVTDHDAVRAAIDAFEAEIG   86 (255)
T ss_pred             CCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc--eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            56777666 56777777665    488999999998887776666665443  5788889987642           123


Q ss_pred             CccEEEEcCCCC
Q psy15742        255 QGDVVFLSPPWG  266 (342)
Q Consensus       255 ~~D~Ii~nPP~~  266 (342)
                      ..|.+|.+....
T Consensus        87 ~~d~li~~ag~~   98 (255)
T PRK07523         87 PIDILVNNAGMQ   98 (255)
T ss_pred             CCCEEEECCCCC
Confidence            689999887544

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=82.72  E-value=7.8  Score=34.49  Aligned_cols=73  Identities=16%  Similarity=0.128  Sum_probs=52.6

Q ss_pred             CCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      +.++|=.| |+|.++..+++.    |.+|+.++.+...++.....+...+.  ++.++.+|+.+..           ..+
T Consensus        12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~Dl~d~~~i~~~~~~~~~~~~   88 (259)
T PRK08213         12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI--DALWIAADVADEADIERLAEETLERFG   88 (259)
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            55677666 677777777653    88999999999888777766654443  6788999987642           113


Q ss_pred             CccEEEEcCCC
Q psy15742        255 QGDVVFLSPPW  265 (342)
Q Consensus       255 ~~D~Ii~nPP~  265 (342)
                      ..|.|+.+...
T Consensus        89 ~id~vi~~ag~   99 (259)
T PRK08213         89 HVDILVNNAGA   99 (259)
T ss_pred             CCCEEEECCCC
Confidence            68999998664

>KOG1596|consensus

Probab=82.23  E-value=2.2  Score=38.04  Aligned_cols=75  Identities=17%  Similarity=0.017  Sum_probs=53.1

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVV  259 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~I  259 (342)
                      +++|.+||=+|+++|+..-+...-   ..-|++||.|+..=+..-.-+++ -  .|+-.+..|+....    .-.-.|+|
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-R--tNiiPIiEDArhP~KYRmlVgmVDvI  230 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-R--TNIIPIIEDARHPAKYRMLVGMVDVI  230 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-c--CCceeeeccCCCchheeeeeeeEEEE
Confidence            578999999999999988888775   35699999987654332222211 1  36777888887643    12368999


Q ss_pred             EEcCC
Q psy15742        260 FLSPP  264 (342)
Q Consensus       260 i~nPP  264 (342)
                      |+|-|
T Consensus       231 FaDva  235 (317)
T KOG1596|consen  231 FADVA  235 (317)
T ss_pred             eccCC
Confidence            99866

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=82.09  E-value=11  Score=33.13  Aligned_cols=75  Identities=17%  Similarity=-0.017  Sum_probs=51.2

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      +.++|=.| |+|.++..+++    .|.+|++++.++..+..+...+...+.  ++.++.+|+.+..           .-+
T Consensus         6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (251)
T PRK12826          6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG--KARARQVDVRDRAALKAAVAAGVEDFG   82 (251)
T ss_pred             CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            55677544 56776666654    488999999998777666666654442  5888999987642           013


Q ss_pred             CccEEEEcCCCCC
Q psy15742        255 QGDVVFLSPPWGG  267 (342)
Q Consensus       255 ~~D~Ii~nPP~~~  267 (342)
                      .+|.|+.++....
T Consensus        83 ~~d~vi~~ag~~~   95 (251)
T PRK12826         83 RLDILVANAGIFP   95 (251)
T ss_pred             CCCEEEECCCCCC
Confidence            6899999875543

>PRK05854 short chain dehydrogenase; Provisional

Probab=81.99  E-value=11  Score=34.84  Aligned_cols=75  Identities=15%  Similarity=-0.017  Sum_probs=50.5

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      +++++=.|+ +|+++..+++    .|.+|+.+..+.+..+.+...+....-..++.++.+|+.+..           ..+
T Consensus        14 gk~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~   92 (313)
T PRK05854         14 GKRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR   92 (313)
T ss_pred             CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            556665555 5566666554    489999999998877776666654322236889999987642           124


Q ss_pred             CccEEEEcCCC
Q psy15742        255 QGDVVFLSPPW  265 (342)
Q Consensus       255 ~~D~Ii~nPP~  265 (342)
                      ..|++|.|.-.
T Consensus        93 ~iD~li~nAG~  103 (313)
T PRK05854         93 PIHLLINNAGV  103 (313)
T ss_pred             CccEEEECCcc
Confidence            68999988643

>TIGR00571 dam DNA adenine methylase (dam)

Probab=81.69  E-value=3.4  Score=37.68  Aligned_cols=85  Identities=12%  Similarity=0.168  Sum_probs=44.0

Q ss_pred             cEEEEEccccccCC-CCCccEEEEcCCCCCCccccc--cccccccCcCCCCchhhhHhhhccCCCc-eeecCCCCCHHHH
Q psy15742        239 KIQFIQGDFFALAP-SLQGDVVFLSPPWGGPEYARS--SFSIDNIFPEQGGGRRLFQVARGISPNV-GYYLPRTSDVFEI  314 (342)
Q Consensus       239 ~i~~~~~D~~~~~~-~~~~D~Ii~nPP~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~l  314 (342)
                      ++++.++|+.+... ...-|+|++||||........  ...-..+...  +...+.++...+.... ...++.+ ....+
T Consensus       155 ~v~i~~~Df~~~i~~~~~~dfvYlDPPY~~~~~~~~f~~y~~~~f~~~--dh~~L~~~l~~l~~~~~~~~lS~~-~~~~i  231 (266)
T TIGR00571       155 NTTFLCGSFEKILAMVDDDSFVYCDPPYLPLSATYNFTGYHTNGFDED--EQKRLANFCKSLDERGIKFLLSNS-DSSFT  231 (266)
T ss_pred             CCEEEECCHHHHHhhcCCCCEEEECCCCCCCCCCCCccCccCCCCCHH--HHHHHHHHHHHHHhCCCEEEEEeC-CCHHH
Confidence            67899999988753 234579999999964321110  0100111111  2345566666554333 3343333 33334


Q ss_pred             HHhhCCCcEEEEe
Q psy15742        315 FHDSGKKGSFISL  327 (342)
Q Consensus       315 ~~~~~~~~~i~~i  327 (342)
                      .++. .++.+..+
T Consensus       232 ~ely-~~~~~~~~  243 (266)
T TIGR00571       232 RELY-QGFNVKVV  243 (266)
T ss_pred             HHHh-cCCeEEEE
Confidence            4443 56666544

All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.

>PRK05867 short chain dehydrogenase; Provisional

Probab=81.56  E-value=9.8  Score=33.77  Aligned_cols=74  Identities=11%  Similarity=-0.078  Sum_probs=51.4

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      ++++|=.|++ |+++..++    +.|.+|+.++.+++.++.....+...+  .++.++.+|+.+..           ..+
T Consensus         9 ~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T PRK05867          9 GKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELG   85 (253)
T ss_pred             CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5677777764 44455544    448999999999988877776666554  36788888987642           114


Q ss_pred             CccEEEEcCCCC
Q psy15742        255 QGDVVFLSPPWG  266 (342)
Q Consensus       255 ~~D~Ii~nPP~~  266 (342)
                      ..|.+|.|.-..
T Consensus        86 ~id~lv~~ag~~   97 (253)
T PRK05867         86 GIDIAVCNAGII   97 (253)
T ss_pred             CCCEEEECCCCC
Confidence            789999987543

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=81.46  E-value=15  Score=34.82  Aligned_cols=45  Identities=9%  Similarity=-0.007  Sum_probs=36.5

Q ss_pred             CCeEEeccCCCcHHHHHHHHh----------CCEEEEEeCCHHHHHHHHHHHHHc
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV----------CQKVISIDIDPAKLRLAQHNASVY  234 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~----------~~~v~gvD~s~~~l~~a~~n~~~~  234 (342)
                      .-.++++|.|+|.++.-+.+.          ..++.-||.|++..+.=+++++..
T Consensus        78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            457999999999998777542          468999999999888877777644

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=81.07  E-value=3.4  Score=38.99  Aligned_cols=71  Identities=23%  Similarity=0.224  Sum_probs=48.5

Q ss_pred             hcCCCCeEEeccCC-CcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc---ccccCCCCCccEEE
Q psy15742        186 RCKASDVVIDGFCG-CGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD---FFALAPSLQGDVVF  260 (342)
Q Consensus       186 ~~~~~~~vLDlgcG-tG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D---~~~~~~~~~~D~Ii  260 (342)
                      .+++|++|+=.|+| .|..++.+|+. +.+|+++|.+++-.+.|++-    |-   -.++.+.   ..+.... .+|+|+
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~~~-~~d~ii  234 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAVKE-IADAII  234 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHhHh-hCcEEE
Confidence            35678888877776 56688888885 99999999999999888764    32   2333322   2222222 399988


Q ss_pred             EcCC
Q psy15742        261 LSPP  264 (342)
Q Consensus       261 ~nPP  264 (342)
                      .--|
T Consensus       235 ~tv~  238 (339)
T COG1064         235 DTVG  238 (339)
T ss_pred             ECCC
Confidence            7655

>KOG1331|consensus

Probab=80.56  E-value=0.85  Score=41.60  Aligned_cols=71  Identities=18%  Similarity=0.067  Sum_probs=50.3

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGG  267 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~~  267 (342)
                      .+..++|.|||.|-....-  -...++|.|++...+..|++.    |   ......+|+.+.+ .+..||.+++---.++
T Consensus        45 ~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~~p~~~~s~d~~lsiavihh  115 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALKLPFREESFDAALSIAVIHH  115 (293)
T ss_pred             CcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC----C---CceeehhhhhcCCCCCCccccchhhhhhhh
Confidence            4778999999999643211  245799999999988887753    1   2267889999887 4458898876544444


Q ss_pred             C
Q psy15742        268 P  268 (342)
Q Consensus       268 ~  268 (342)
                      .
T Consensus       116 l  116 (293)
T KOG1331|consen  116 L  116 (293)
T ss_pred             h
Confidence            3

>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]

Probab=80.38  E-value=2  Score=44.45  Aligned_cols=43  Identities=14%  Similarity=0.340  Sum_probs=38.4

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS  232 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~  232 (342)
                      +..++|+++|-|++.+++++.|..|+++|++|.+.-..+.-+.
T Consensus        91 ~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavlE  133 (875)
T COG1743          91 GPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVLE  133 (875)
T ss_pred             CCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHHh
Confidence            5689999999999999999999999999999999877766553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	342
3gdh_A	241	Methyltransferase Domain Of Human Trimethylguanosin		2e-48
3egi_A	206	Methyltransferase Domain Of Human Trimethylguanosin		8e-42
2zzn_A	336	The Complex Structure Of Atrm5 And Trnacys Length =		4e-04
2zzm_A	336	The Complex Structure Of Atrm5 And Trnaleu Length =		8e-04

>pdb|3GDH|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine Synthase 1 (Tgs1) Bound To M7gtp And Adenosyl-Homocysteine (Active Form) Length = 241

Iteration: 1
 Score =  189 bits (480), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 99/217 (45%), Positives = 135/217 (62%), Gaps = 32/217 (14%)
Query: 110 VPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVID 169
           +P EI A P L KY+ QRY  +SR+D+GI +D E                          
Sbjct: 22  LPPEIAAVPELAKYWAQRYRLFSRFDDGIKLDRE-------------------------- 55
Query: 170 GWYSVTPEKVAQHIASRCKAS---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRL 226
           GW+SVTPEK+A+HIA R   S   DVV+D FCG GGNTIQFA    +VI+IDIDP K+ L
Sbjct: 56  GWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIAL 115
Query: 227 AQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQG 285
           A++NA VYG++ KI+FI GDF  LA  L+ DVVFLSPPWGGP+YA + +F I  +     
Sbjct: 116 ARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTMMSPD- 174
Query: 286 GGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKG 322
            G  +F++++ I+ N+ Y+LPR +D+ ++   +G  G
Sbjct: 175 -GFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGG 210

>pdb|3EGI|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine Synthase Tgs1 Bound To M7gpppa (Inactive Form) Length = 206

Iteration: 1
 Score =  167 bits (423), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 121/196 (61%), Gaps = 32/196 (16%)
Query: 131 WSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKAS 190
           +SR+D+GI +D E                          GW+SVTPEK+A+HIA R   S
Sbjct: 8   FSRFDDGIKLDRE--------------------------GWFSVTPEKIAEHIAGRVSQS 41
Query: 191 ---DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 247
              DVV+D FCG GGNTIQFA    +VI+IDIDP K+ LA++NA VYG++ KI+FI GDF
Sbjct: 42  FKCDVVVDAFCGVGGNTIQFALTGXRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDF 101
Query: 248 FALAPSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQGGGRRLFQVARGISPNVGYYLP 306
             LA  L+ DVVFLSPPWGGP+YA + +F I         G  +F++++ I+ N+ Y+LP
Sbjct: 102 LLLASFLKADVVFLSPPWGGPDYATAETFDIRTXXSPD--GFEIFRLSKKITNNIVYFLP 159
Query: 307 RTSDVFEIFHDSGKKG 322
           R +D+ ++   +G  G
Sbjct: 160 RNADIDQVASLAGPGG 175

>pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys Length = 336

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 182 HIASRCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSH 238
            I  +   +DVV+D F G G     F+  C+   K+ +IDI+P  + L + N  +  + H
Sbjct: 188 RIMKKVSLNDVVVDMFAGVG----PFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEH 243
Query: 239 KIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGG 286
           KI  I  D   +   ++G+ V ++ P    ++   +  I     E+GG
Sbjct: 244 KIIPILSDVREV--DVKGNRVIMNLPKFAHKFIDKALDI----VEEGG 285

>pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu Length = 336

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 182 HIASRCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSH 238
            I  +   +DVV+D F G G     F+  C+   K+ +IDI+P  + L   N  +  + H
Sbjct: 188 RIMKKVSLNDVVVDMFAGVG----PFSIACKNAKKIYAIDINPHAIELLXKNIKLNKLEH 243
Query: 239 KIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGG 286
           KI  I  D   +   ++G+ V ++ P    ++   +  I     E+GG
Sbjct: 244 KIIPILSDVREV--DVKGNRVIMNLPKFAHKFIDKALDI----VEEGG 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	4e-62
3ll7_A	410	Putative methyltransferase; methytransferase, stru	1e-24
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	8e-11
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	6e-10
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	2e-09
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	2e-09
2frn_A	278	Hypothetical protein PH0793; structural genomics,	2e-09
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	6e-09
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	1e-08
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	1e-08
3ocj_A	305	Putative exported protein; structural genomics, PS	1e-08
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	2e-08
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	3e-08
3lcc_A	235	Putative methyl chloride transferase; halide methy	4e-08
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	5e-08
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	6e-08
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	1e-07
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	1e-07
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	2e-07
3lpm_A	259	Putative methyltransferase; structural genomics, p	2e-07
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	3e-07
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	3e-07
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	5e-07
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	5e-07
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	6e-07
3f4k_A	257	Putative methyltransferase; structural genomics, P	6e-07
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	1e-06
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	1e-06
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	1e-06
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	2e-06
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	2e-06
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	2e-06
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	3e-06
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	3e-06
1xxl_A	239	YCGJ protein; structural genomics, protein structu	3e-06
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	4e-06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	4e-06
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	1e-05
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	1e-05
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	1e-05
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	1e-05
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	2e-05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-05
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	2e-05
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	2e-05
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	2e-05
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	2e-05
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	2e-05
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	3e-05
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	3e-05
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	5e-05
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	6e-05
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	8e-05
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	9e-05
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	9e-05
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	9e-05
2qm3_A	373	Predicted methyltransferase; putative methyltransf	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	1e-04
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	2e-04
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	2e-04
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	2e-04
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	2e-04
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	3e-04
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	3e-04
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	3e-04
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	3e-04
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	3e-04
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	3e-04
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	4e-04
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	4e-04
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	4e-04
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	4e-04
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	5e-04
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	5e-04
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	5e-04
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	6e-04
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	6e-04
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	6e-04
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	7e-04
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	7e-04

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score =  197 bits (502), Expect = 4e-62
 Identities = 105/259 (40%), Positives = 148/259 (57%), Gaps = 44/259 (16%)

Query: 77  LPSEFGSQRKKKRRRKKRSFELNYQEDLGDLENVPEEIWANPYLNKYYQQRYLYWSRYDE 136
           L SE    +KKK ++K +            +  +P EI A P L KY+ QRY  +SR+D+
Sbjct: 3   LGSEV---KKKKNKKKNKK-----------VNGLPPEIAAVPELAKYWAQRYRLFSRFDD 48

Query: 137 GILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDG 196
           GI +D E W+SVTPEK+A+HIA R                         +    DVV+D 
Sbjct: 49  GIKLDREGWFSVTPEKIAEHIAGRVS-----------------------QSFKCDVVVDA 85

Query: 197 FCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG 256
           FCG GGNTIQFA    +VI+IDIDP K+ LA++NA VYG++ KI+FI GDF  LA  L+ 
Sbjct: 86  FCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKA 145

Query: 257 DVVFLSPPWGGPEYARS-SFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIF 315
           DVVFLSPPWGGP+YA + +F I  +      G  +F++++ I+ N+ Y+LPR +D+ ++ 
Sbjct: 146 DVVFLSPPWGGPDYATAETFDIRTMMSP--DGFEIFRLSKKITNNIVYFLPRNADIDQVA 203

Query: 316 HDSGKKGSF----ISLTGR 330
             +G  G        L  +
Sbjct: 204 SLAGPGGQVEIEQNFLNNK 222

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score =  102 bits (255), Expect = 1e-24
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 4/114 (3%)

Query: 169 DGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQ 228
                 +    + + +   +    V+D   G G + I   +   + I I+ +      A+
Sbjct: 73  LSLEQSSGAVTSSYKSRFIREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAAR 132

Query: 229 HNASVYG-VSHKIQFIQGDFFALAPSLQG---DVVFLSPPWGGPEYARSSFSID 278
           HN  +       +  + GDF    P ++    D +++ P        R     D
Sbjct: 133 HNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPARRSGADKRVYAIAD 186

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336

 Score = 61.4 bits (149), Expect = 8e-11
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKI 240
             I  +   +DVV+D F G G  +I      +K+ +IDI+P  + L + N  +  + HKI
Sbjct: 187 ARIMKKVSLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKI 245

Query: 241 QFIQGDFFALAPSLQGDVVFLSPPWGGPEY 270
             I  D   +    +G+ V ++ P    ++
Sbjct: 246 IPILSDVREVDV--KGNRVIMNLPKFAHKF 273

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
           DV +D  CG GG T++ A   ++V +ID +P  +   + N   +G+   +  ++GD    
Sbjct: 35  DVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA 94

Query: 251 APSLQG-DVVFL 261
              +   D+  +
Sbjct: 95  LCKIPDIDIAVV 106

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 177 EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNA 231
             +AQ +      +    V+D F G G   ++ A+       V + D+D  +L LA+  A
Sbjct: 189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAA 248

Query: 232 SVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG 266
              G+S  I+F++ D   L     + D +  +PP G
Sbjct: 249 LASGLSW-IRFLRADARHLPRFFPEVDRILANPPHG 283

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 177 EKVAQHIASRCKAS-DVVIDGFCGCGGNTIQFA--AVCQKVISIDIDPAKLRLAQHNASV 233
             +A  +    +     V+D  CG G   I+ A      ++I I+     L  A+ NA  
Sbjct: 204 ASIANAMIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALA 263

Query: 234 YGVSHKIQFIQGDFFAL-APSLQGDVVFLSPPWG 266
            GV  KI+FIQGD   L       D    + P+G
Sbjct: 264 AGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYG 297

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 1/98 (1%)

Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHK 239
             +A   K  ++V+D F G G  ++  A     KVI+I+ DP   +    N  +  V  +
Sbjct: 117 VRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDR 176

Query: 240 IQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSI 277
           +     D          D + +       E+   + SI
Sbjct: 177 MSAYNMDNRDFPGENIADRILMGYVVRTHEFIPKALSI 214

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 54.1 bits (130), Expect = 6e-09
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQF 242
           +A       +V+D   G G +T   A + +KV + D+    L       S  G+ +  + 
Sbjct: 16  LAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIEN-TEL 74

Query: 243 IQGDFFALAPSLQGDV 258
           I      L   ++  +
Sbjct: 75  ILDGHENLDHYVREPI 90

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 10/106 (9%)

Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHK 239
             +    +  D V+D F   GG  I  A A   +VI ID  P  +  A+ NA + GV  +
Sbjct: 209 LALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDR 268

Query: 240 IQFIQGDFFALAPSLQG-----DVVFLSPPWGGPEYARSSFSIDNI 280
           ++FI G  F     LQ      D+V L P    P + +    +   
Sbjct: 269 MKFIVGSAFEEMEKLQKKGEKFDIVVLDP----PAFVQHEKDLKAG 310

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
           DVV+D  CG GG T++ A  C+ V +ID     + + + N + + + +  Q I+G    +
Sbjct: 37  DVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKN-CQIIKGRAEDV 95

Query: 251 APSLQGDVVFLSPPWGG 267
              L+ +  F+    GG
Sbjct: 96  LDKLEFNKAFI----GG 108

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 19/128 (14%)

Query: 177 EKVAQHIASRCKASDVVID-GFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNAS 232
               + +    +   VV     CG     +          +++ ID DP  L  A   A+
Sbjct: 106 GHFRRALQRHLRPGCVVASVP-CGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAA 164

Query: 233 VYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLF- 291
            + ++ +I   + D + L      D++              S  ++   P+      L+ 
Sbjct: 165 GHALAGQITLHRQDAWKLDTREGYDLLT-------------SNGLNIYEPDDARVTELYR 211

Query: 292 QVARGISP 299
           +  + + P
Sbjct: 212 RFWQALKP 219

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 191 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
           +++ D   G G  ++++     + I+I+    ++   Q N   YG+S +++ +QG   A 
Sbjct: 57  ELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA 116

Query: 251 APSLQG-DVVFLS 262
              L   + VF+ 
Sbjct: 117 LADLPLPEAVFIG 129

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKI 240
           +   +  +  + V+D +   GG  ++ A      +++D D   L +    A   G+    
Sbjct: 206 RLFEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVD- 264

Query: 241 QFIQGDFFALAPSLQG--DVVFLSPP 264
               G+       L+G    V L PP
Sbjct: 265 -IRHGEALPTLRGLEGPFHHVLLDPP 289

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 52.7 bits (126), Expect = 4e-08
 Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 7/112 (6%)

Query: 169 DGWYSVTP-EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLA 227
             W        +   + +        +   CG G + +  A+  + V+ +DI  + L  A
Sbjct: 45  TPWDQGRATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKA 104

Query: 228 QHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS------PPWGGPEYARS 273
                    +    F++ D F   P+   D++F         P   P +A+S
Sbjct: 105 NETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKS 156

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 52.7 bits (126), Expect = 5e-08
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 5/120 (4%)

Query: 143 ESWYSVTP--EKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGC 200
           ++W+ V    + +   +   CK  D      Y+ T        A++  +   V+D  CG 
Sbjct: 73  QAWHRVEALSDDLECTLGFYCKKEDYFSK-KYNTTAIHGDVVDAAKIISPCKVLDLGCGQ 131

Query: 201 GGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVF 260
           G N++  + +   V S D +   +           +   I     D  A       D + 
Sbjct: 132 GRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDFIV 189

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 12/130 (9%)

Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSH 238
           Q +A+       ++D         I       C   I+ ++     + A  N S +G++ 
Sbjct: 13  QKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTS 72

Query: 239 KIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGI- 297
           KI     +  +                GG         I +I        +L  V   + 
Sbjct: 73  KIDVRLANGLSAFEEADNIDTITICGMGG-------RLIADILNN--DIDKLQHVKTLVL 123

Query: 298 SPNVGYYLPR 307
            PN      R
Sbjct: 124 QPNNREDDLR 133

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} Length = 385

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 218 DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 266
           DID   + +A+ NA + GV   I+F  GD        +   +  +PP+G
Sbjct: 264 DIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYG 312

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} Length = 393

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 218 DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 266
           DID   + +A+ NA   G+   I F Q          +  VV  +PP+G
Sbjct: 270 DIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYG 318

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} Length = 384

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 218 DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 266
           D D   + +A+ NA   G+   ++  Q        +    V+  +PP+G
Sbjct: 263 DFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYG 311

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 193 VIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA 251
           +ID   G G   +  +   + K++ ++I      +A+ + +   +  +I+ I+ D   + 
Sbjct: 53  IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT 112

Query: 252 PSLQG---DVVFLSPPW 265
             +     D+V  +PP+
Sbjct: 113 DLIPKERADIVTCNPPY 129

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSH 238
           + +AS    ++ + D                     I+ ++     + AQ      G++ 
Sbjct: 13  EKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTE 72

Query: 239 KIQFIQGDFFAL 250
           +I   +G+  A+
Sbjct: 73  QIDVRKGNGLAV 84

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 247
           +  D V+D FCG G  T+  A     V+ ++  PA +   Q NA + G+ + + F   + 
Sbjct: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENL 343

Query: 248 FALAPSLQG-----DVVFLSPP 264
                         D V L P 
Sbjct: 344 EEDVTKQPWAKNGFDKVLLDPA 365

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 164 SDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPA 222
           S  +    Y +  E +          +   ID   G G  +I  A      + ++D    
Sbjct: 21  SKTLFAPIYPIIAENIINRFGIT---AGTCIDIGSGPGALSIALAKQSDFSIRALDFSKH 77

Query: 223 KLRLAQHNASVYGVSHKIQFIQGDFFAL 250
              +A  N +   ++ +IQ +QGD   +
Sbjct: 78  MNEIALKNIADANLNDRIQIVQGDVHNI 105

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
               ++ D  CG GG T+  A     +V  +D     + +   NA   G+ +++  I G 
Sbjct: 45  TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGS 104

Query: 247 FFAL 250
              L
Sbjct: 105 MDDL 108

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 48.4 bits (115), Expect = 6e-07
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVS 237
            +I    K  D V+D  CG G +T   A++     +V   DI    +       +   + 
Sbjct: 14  DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI 73

Query: 238 HKIQFIQGDFFALAPSLQGDV 258
            ++  I+     +   +   V
Sbjct: 74  DRVTLIKDGHQNMDKYIDCPV 94

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 49.1 bits (117), Expect = 6e-07
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
                + D  CG GG T+  A   + ++  ID+ P  + +   NA     + +++ I G 
Sbjct: 45  TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGS 104

Query: 247 FFAL 250
              L
Sbjct: 105 MDNL 108

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 198 CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD 257
           CG G N++  AA    V + D +   +   +   S+  + + +     D   L    Q D
Sbjct: 41  CGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLTFDRQYD 99

Query: 258 VVF 260
            + 
Sbjct: 100 FIL 102

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 154 AQHIASRCKASDVVIDGWYSVTPEKVAQ--HIASRCKASDVVIDGFCGCGGNTIQFAAVC 211
           AQ +       + +   ++     ++ +      R +  +  +    G    T    +  
Sbjct: 85  AQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHV 144

Query: 212 Q--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262
              +V  ++I+P    L++      GV   +  I GD   +   L+ DV+ ++
Sbjct: 145 YGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-DGLEFDVLMVA 195

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Length = 425

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249
            + ++D + G G   I  A     V   D +   + +A+ N  +  V      +  D   
Sbjct: 291 GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDA-EFEVASDREV 349

Query: 250 LAPSLQGDVVFLSPP 264
                  D V + PP
Sbjct: 350 SVKGF--DTVIVDPP 362

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 193 VIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP 252
            +D F   GG  +  A   ++V+++D     LR A+ NA + G+   ++ ++ + F L  
Sbjct: 213 ALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLR 271

Query: 253 SLQG-----DVVFLSPPWGGPEYARSSFSIDN 279
            L+      D+V L P    P +A+    ++ 
Sbjct: 272 RLEKEGERFDLVVLDP----PAFAKGKKDVER 299

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 192 VVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
           VV D   G G  +     +  ++VI +++D   + +   N   +    K +   G     
Sbjct: 52  VVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIG--DVS 107

Query: 251 APSLQGDVVFLSPPWG 266
             + + D+V ++PP+G
Sbjct: 108 EFNSRVDIVIMNPPFG 123

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} Length = 258

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 12/95 (12%)

Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPA-------KLRLAQHNASVYGVSHKI 240
            A   V D   G G ++   A++   V + +  PA        +R A  N      + +I
Sbjct: 82  TAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARI 141

Query: 241 QFIQGDFFALAPSL-----QGDVVFLSPPWGGPEY 270
               G+     P+L     + D+V+L P +     
Sbjct: 142 NLHFGNAAEQMPALVKTQGKPDIVYLDPMYPERRK 176

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGV 236
           + +AS      +++D   G     +    V     +  I+ ++     + A  N   +G+
Sbjct: 7   ELVASFVSQGAILLD--VGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL 64

Query: 237 SHKIQFIQGDFFAL 250
             KIQ    +  A 
Sbjct: 65  KEKIQVRLANGLAA 78

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 33/228 (14%), Positives = 66/228 (28%), Gaps = 30/228 (13%)

Query: 62  FNILEDVAYQETLNTLPSEFGSQRKKKRRRKKRSFELNYQEDLGDLEN----VPEEIWAN 117
            +   ++   ET+  +  E    +          ++    E +  L +      + I   
Sbjct: 49  HDAAHEI--IETIRWVCEEIPDLKLAMENYVLIDYDTKSFESMQRLCDKYNRAIDSIHQL 106

Query: 118 P-YLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTP 176
                +  +      +     IL    +     PEK+  +               Y  T 
Sbjct: 107 WKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFS--------PEVYGETS 158

Query: 177 EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNA- 231
             +   +         D+ +D   G G   +Q AA   C+    ++      + A+    
Sbjct: 159 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDR 218

Query: 232 ------SVYGVSH-KIQFIQGDFFAL---APSLQGDVVFLSPPWGGPE 269
                   YG  H +    +GDF +           V+F++    GPE
Sbjct: 219 EFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPE 266

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 184 ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI 243
            + C+A   V+D   G G   + F+   Q+ I +D     + +A   A   GV + ++F 
Sbjct: 16  TAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVEN-VRFQ 74

Query: 244 QGDFFAL 250
           QG   +L
Sbjct: 75  QGTAESL 81

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG 245
                V++  CG G  T+  A      ++ SIDI P  L  A+ N    G+ + ++F+Q 
Sbjct: 36  PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN-VKFLQA 94

Query: 246 DFFAL 250
           + F+L
Sbjct: 95  NIFSL 99

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 198 CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD 257
            G G  T   + +  +V ++D     +  A  +         ++F Q D F   P  Q D
Sbjct: 55  SGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHG-----LDNVEFRQQDLFDWTPDRQWD 109

Query: 258 VVF 260
            VF
Sbjct: 110 AVF 112

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGD 246
              D ++D  CG G   I  A   +     DI+   ++LA+ N  +  +  + I+ +  D
Sbjct: 51  DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD 110

Query: 247 FFALAPSLQGDVVFLSPP 264
            +      + + +  +PP
Sbjct: 111 LYENVKDRKYNKIITNPP 128

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 169 DGWYSVTPEKVAQHIASRCKASDVVID-GFCGCGGNTIQFAAVCQKVISIDIDPAKLRLA 227
           D  +          ++    A    ++ G C  G  T + A  C+++  ID+ P  +  A
Sbjct: 31  DNPFERERHTQLLRLSLSSGAVSNGLEIG-CAAGAFTEKLAPHCKRLTVIDVMPRAIGRA 89

Query: 228 QHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262
                 +     I +   D    + +   D++ ++
Sbjct: 90  CQRTKRWS---HISWAATDILQFSTAELFDLIVVA 121

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 193 VIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFAL 250
           V++ F   GG  +      C +V+S+D     L +A+ N  +  +   K +F++ D F L
Sbjct: 224 VLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL 283

Query: 251 APSLQG-----DVVFLSPP 264
             + +      DV+ + PP
Sbjct: 284 LRTYRDRGEKFDVIVMDPP 302

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP 264
           KV + ++D      A+ N      + ++    G           DV+F +PP
Sbjct: 81  KVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* Length = 703

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 218 DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD---VVFLSPPWG 266
           D D   ++ A+ NA + G+   I F   D   L   L       V  +PP+G
Sbjct: 263 DSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYG 314

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 140 MDEESWYSVTPEKVAQHIASRCKASDVVIDG-WYSVTPEKVAQHIASRCKASDVVIDGFC 198
           M + +W+    E   +   S  +  +      W S +   +        K    V+D  C
Sbjct: 7   MTKFNWH----ESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGC 62

Query: 199 GCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
           G G  T + +    K + +DI    ++  +           + FI+GD  +L
Sbjct: 63  GDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGE----GPDLSFIKGDLSSL 110

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} Length = 369

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 18/89 (20%)

Query: 193 VIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP 252
           +++ +CG G  ++  A    +V++ +I    +  AQ+N +   + + +Q I+        
Sbjct: 217 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDN-VQIIRMAAEEFTQ 275

Query: 253 SLQG-----------------DVVFLSPP 264
           ++ G                 + +F+ PP
Sbjct: 276 AMNGVREFNRLQGIDLKSYQCETIFVDPP 304

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 191 DVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249
             VID   G G        +  + V + DIDP  +  A+ N         + F+      
Sbjct: 53  RSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVA--DV 104

Query: 250 LAPSLQGDVVFLSPPWG 266
              S + D   ++PP+G
Sbjct: 105 SEISGKYDTWIMNPPFG 121

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV 236
           E +   +    K    V+D  CG GG +        +V+ +DI    +R A+  A     
Sbjct: 26  ETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRES 85

Query: 237 SHKIQFIQGDFFAL 250
              ++FI GD   L
Sbjct: 86  --NVEFIVGDARKL 97

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 5/77 (6%)

Query: 191 DVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 248
           + + D   G G   I++         +  +I   +      NA   GVS     +Q    
Sbjct: 27  ETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSD-RIAVQQGAP 85

Query: 249 ALAPSLQG--DVVFLSP 263
                +    DV+F+  
Sbjct: 86  RAFDDVPDNPDVIFIGG 102

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 1/64 (1%)

Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 246
           +     +D   G GG            +  ++I P + +  +   +  G++  I    G 
Sbjct: 81  QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS 140

Query: 247 FFAL 250
           F  +
Sbjct: 141 FLEI 144

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 249
            V + D+    + +A+ NA  +GVS +    +G+F  
Sbjct: 148 IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE 184

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 181 QHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS 237
             + +    ++ D V+D  CG G   ++ A     +V  I I   ++  A   A+  G++
Sbjct: 51  DEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA 110

Query: 238 HKIQFIQGDFFAL 250
           +++ F   D   L
Sbjct: 111 NRVTFSYADAMDL 123

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 9/80 (11%)

Query: 193 VIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFA 249
           V++ F      ++  AA+       S+D+      L+  +     +     Q +  D F 
Sbjct: 216 VLNLFSYTAAFSVA-AAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD 274

Query: 250 LAPSLQG-----DVVFLSPP 264
                +      D++ + PP
Sbjct: 275 YFKYARRHHLTYDIIIIDPP 294

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 5/92 (5%)

Query: 186 RCKASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQF 242
             +    +++   G G  +            +  ++ D   L+ A  N S +     ++ 
Sbjct: 107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRT 166

Query: 243 IQGDFFALAPSLQGDVVF--LSPPWGGPEYAR 272
            + D          D V   +  PW   +   
Sbjct: 167 SRSDIADFISDQMYDAVIADIPDPWNHVQKIA 198

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A Length = 258

 Score = 42.4 bits (99), Expect = 8e-05
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP--------AKLRLAQHNASVYGVSHK 239
                V+D   G G +    A+V  +V  ++ +P           R          +  +
Sbjct: 87  DYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQER 146

Query: 240 IQFIQGDFFALAPSL--QGDVVFLSPPWGGPE 269
           +Q I          +  +  VV+L P +   +
Sbjct: 147 LQLIHASSLTALTDITPRPQVVYLDPMFPHKQ 178

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 12/63 (19%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 204 TIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG---DV 258
           ++QFA++     V +I+ +   ++ A+ N + Y   ++++ I+G+      ++     D+
Sbjct: 86  SMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDM 145

Query: 259 VFL 261
           +F+
Sbjct: 146 IFI 148

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 42.6 bits (100), Expect = 9e-05
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 13/93 (13%)

Query: 186 RCKASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNAS---VYGVSHKI 240
               +  + D   G G   +  AA  +  +V   +        A+ +         S +I
Sbjct: 33  ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARI 92

Query: 241 QFIQGDFFALA--------PSLQGDVVFLSPPW 265
           + ++ D    A        P      V ++PP+
Sbjct: 93  EVLEADVTLRAKARVEAGLPDEHFHHVIMNPPY 125

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 11/77 (14%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 191 DVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 248
            V+ D   G    +I+ + +    ++ +++ +P  L   + N   +   + +  ++    
Sbjct: 42  LVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARN-VTLVEAFAP 100

Query: 249 ALAPSLQG-DVVFLSPP 264
                L   D VF+   
Sbjct: 101 EGLDDLPDPDRVFIGGS 117

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Length = 373

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 13/126 (10%)

Query: 151 EKVAQHIASRCKASDVVIDGWYSVTPEKV---AQHIASRCKASDVVIDGFCGCGGNT--- 204
           E+  + +  R +      D  Y VTPE        + +R    +  I    G    T   
Sbjct: 132 EQFREIVKDRPEP-LHEFDQAY-VTPETTVARVILMHTRGDLENKDI-FVLGDDDLTSIA 188

Query: 205 IQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF-FALAPSLQG--DVVFL 261
           +  + + +++  +DID    +  +  A+  G    I+    D    L        D    
Sbjct: 189 LMLSGLPKRIAVLDIDERLTKFIEKAANEIGYED-IEIFTFDLRKPLPDYALHKFDTFIT 247

Query: 262 SPPWGG 267
            PP   
Sbjct: 248 DPPETL 253

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 58/181 (32%)

Query: 67  DVAYQETLNTLPSEFGSQRKKKRRRKKRSFELNYQEDLGDLENV-----PEEIWANPYLN 121
              Y++ L+     F             +F+    +D+   +++      + I  +   +
Sbjct: 15  QYQYKDILSVFEDAF-----------VDNFDCKDVQDM--PKSILSKEEIDHIIMSK--D 59

Query: 122 KYYQQRYLYWS----------RYDEGILMDEESWYSVTPEKVAQHIASRCKA-------- 163
                  L+W+          ++ E +L     +       +   I +  +         
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-------LMSPIKTEQRQPSMMTRMY 112

Query: 164 --------SDVVIDGWYSVT-PEKVAQ---HIASRCKASDVVIDGFCGCGGNTIQFAAVC 211
                   +D  +   Y+V+  +   +    +     A +V+IDG  G  G T     VC
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVC 171

Query: 212 Q 212
            
Sbjct: 172 L 172

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 184 ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI 243
            +  K ++ V+D   G G     FA   +KV++ D+    L++A+      G    ++++
Sbjct: 32  IAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ-VEYV 90

Query: 244 QGDFFAL 250
           QGD   +
Sbjct: 91  QGDAEQM 97

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 198 CGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 250
           CG G   +    +     K   ID     L  A+    +       +F++GD   +
Sbjct: 31  CGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI 84

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG-DVVFL 261
           +V+ ID D   +  A+      G+  +++   GD   +A   +  D++F+
Sbjct: 83  RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFM 132

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 19/125 (15%)

Query: 150 PEKVAQHIASRCKASDVVIDGWYSVTPEKVA--QHIASRCKASDVV-IDGFCGCGGNTIQ 206
           P+ V + I + C   +  ++    V   K      +      S V+ +  +CG     ++
Sbjct: 22  PQSVLEAIDTYCTQKEWAMN----VGDAKGQIMDAVIREYSPSLVLELGAYCGYS--AVR 75

Query: 207 FAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG------- 256
            A + Q   ++++++I+P    + Q   +  G+  K+  + G    L P L+        
Sbjct: 76  MARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135

Query: 257 DVVFL 261
           D+VFL
Sbjct: 136 DMVFL 140

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV 236
           E + + +         V+D   G G  T+  A +  +V+ ++ D A +   Q       +
Sbjct: 221 EALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANAL 280

Query: 237 SHKIQFIQGDFF-ALAPSLQGDVVFLSPP 264
             K Q +  D   AL    + D++  +PP
Sbjct: 281 --KAQALHSDVDEALTEEARFDIIVTNPP 307

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 9/93 (9%)

Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY 234
             V   + S       VID  CG G            +++  +D+  + L  A+    + 
Sbjct: 19  GTVVAVLKSVNAKK--VIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID 76

Query: 235 GVSH----KIQFIQGDFFALAPSLQG-DVVFLS 262
            +      +I   Q           G D   + 
Sbjct: 77  RLPEMQRKRISLFQSSLVYRDKRFSGYDAATVI 109

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Length = 272

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSH 238
           + +A     ++VV+D F G G  TI  A     + V +I+ +P        N  +  +++
Sbjct: 111 KRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNN 170

Query: 239 KIQFIQGDFFALAPSLQGDVVFLSPP 264
            I  +  +       +   V+     
Sbjct: 171 VIPILADNRDVELKDVADRVIMGYVH 196

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Length = 332

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 13/135 (9%)

Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV 236
           E +   + +  +   V ++ F   G  ++  AA   +V  +D     +  A+ N  + G+
Sbjct: 142 EWLKNAVETADRPLKV-LNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGL 200

Query: 237 SHK-IQFIQGDFFALAPSLQG-----DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRL 290
               I++I  D        +      D++   P    P++ R +     ++        +
Sbjct: 201 EQAPIRWICEDAMKFIQREERRGSTYDIILTDP----PKFGRGTHG--EVWQLFDHLPLM 254

Query: 291 FQVARGISPNVGYYL 305
             + R I       L
Sbjct: 255 LDICREILSPKALGL 269

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 7/102 (6%)

Query: 178 KVAQHIASRCKAS--DVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNAS 232
           K A  I +    S  D +++   G G  T+  A +     +V+S +I     +LA  N  
Sbjct: 80  KDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK 139

Query: 233 VYGVSHKIQFIQGDFFALAPSLQGDVVFL--SPPWGGPEYAR 272
             G   ++     D +        D V L    P    E+A 
Sbjct: 140 WAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHAA 181

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 213 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG----DVVFL 261
            ++SI+ D  +   A  +    G+  +I+ + GD   L   L+     DV+F+
Sbjct: 80  TIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 247
           K+   V++   G G  T +     + V  I+       +A+          +    +GDF
Sbjct: 44  KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKL-----PKEFSITEGDF 98

Query: 248 FALAPSLQGDVVFLS 262
            +       D +  +
Sbjct: 99  LSFEVPTSIDTIVST 113

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 17/116 (14%), Positives = 28/116 (24%), Gaps = 18/116 (15%)

Query: 183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQF 242
           +        +V+D     G  T         V+S D++   L   +              
Sbjct: 17  LEREGLEMKIVLDLGTSTGVITE-QLRKRNTVVSTDLNIRALESHRGG----------NL 65

Query: 243 IQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFS-------IDNIFPEQGGGRRLF 291
           ++ D          DVV  +PP+                  ID        G    
Sbjct: 66  VRADLLCSINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAVTVGMLYL 121

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 179 VAQHIASRCKASDV--VIDGFCGCGGNTIQFAAVCQ-----KVISIDIDPAKLRLAQHNA 231
             Q +    K   V  +ID   G  G+    AA+ +         +++ P  + L   NA
Sbjct: 178 AIQLLLEEAKLDGVKKMID-VGGGIGDIS--AAMLKHFPELDSTILNL-PGAIDLVNENA 233

Query: 232 SVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 262
           +  GV+ +++ I  D +  +   + D V   
Sbjct: 234 AEKGVADRMRGIAVDIYKESYP-EADAVLFC 263

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 247
           +  + ++D  CG G  T + A    +V+  D     +  A+ N         + F   D 
Sbjct: 56  QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYP------HLHFDVADA 109

Query: 248 FALAPSLQGDVVF 260
                    D VF
Sbjct: 110 RNFRVDKPLDAVF 122

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 22/135 (16%), Positives = 37/135 (27%), Gaps = 14/135 (10%)

Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNAS-- 232
             V   +         VID  CG G            +++  +D+    L +AQ      
Sbjct: 19  NGVVAALKQSNARR--VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRL 76

Query: 233 --VYGVSHKIQFIQGDFFALAPSLQG-DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRR 289
                   ++Q IQG          G D   +       + +R       +F        
Sbjct: 77  RLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIV 136

Query: 290 LFQVARGISPNVGYY 304
           +        PN+ Y 
Sbjct: 137 IVTT-----PNIEYN 146

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 7/90 (7%)

Query: 171 WYSVTPEKVAQHIASRCKASD---VVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLA 227
           W +     V   +       +    +ID  CG G  T   +    +VI +D+  + L +A
Sbjct: 35  WDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIA 94

Query: 228 QHNASVYGVSHKIQFIQGDFFALAPSLQGD 257
               +   +S    +   D      + Q  
Sbjct: 95  AKENTAANIS----YRLLDGLVPEQAAQIH 120

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 40.5 bits (94), Expect = 5e-04
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 21/127 (16%)

Query: 146 YSVTPEKVAQHIASRCKASDVVIDGWY---SVTPEKVAQHIASR--------CKASDVVI 194
           Y  T +  A    S CK +  V +      +   ++V +                   V+
Sbjct: 29  YGKTLQSSADLKTSACKLAAAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVL 88

Query: 195 DGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHK-------IQFIQ 244
           D  CG G +    + +     KVI +D+   +L +A+     +            ++F++
Sbjct: 89  DLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLK 148

Query: 245 GDFFALA 251
           G    LA
Sbjct: 149 GFIENLA 155

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 26/112 (23%)

Query: 198 CGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG- 256
           CG G +  +F     +  + D  P  L+LA+ NA            + +     P+  G 
Sbjct: 57  CGHGPDAARFGPQAARWAAYDFSPELLKLARANAP------HADVYEWNGKGELPAGLGA 110

Query: 257 --DVVFLSPPWGGPEYARSSFSIDNIFPE-----QGGGRRLFQVARGISPNV 301
              ++             S     ++              L+   R   P V
Sbjct: 111 PFGLIV------------SRRGPTSVILRLPELAAPDAHFLYVGPRLNVPEV 150

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 175 TPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNA 231
           T EK A  +      K    ++D   G G     +A         ID+       A+  A
Sbjct: 21  TEEKYA-TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRA 79

Query: 232 SVYGVSHKIQFIQGDFFALAPSLQGDVV 259
              GVS ++ FI  D      + + DV 
Sbjct: 80  EELGVSERVHFIHNDAAGYVANEKCDVA 107

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 193 VIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP 252
           V+D  CG G  T++ A    +V+ +D+    LR+A+  A    +  KI+F+QGD   +A 
Sbjct: 45  VLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF 102

Query: 253 SLQGDVVF 260
             + D V 
Sbjct: 103 KNEFDAVT 110

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 27/161 (16%), Positives = 48/161 (29%), Gaps = 14/161 (8%)

Query: 183 IASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQ 241
           I    K  D V+D  CG GG+ +++      +   +DI    +  A+  A       K+ 
Sbjct: 58  IRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVF 117

Query: 242 FIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQ-VARGISPN 300
           F   D +                    +   S FS    F          + +AR + P 
Sbjct: 118 FRAQDSYGRHM----------DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG 167

Query: 301 --VGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQDM 339
                 +P    + E +        F  +   +M     + 
Sbjct: 168 GYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMES 208

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* Length = 392

 Score = 40.2 bits (93), Expect = 7e-04
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 7/93 (7%)

Query: 179 VAQHIASRCKASDVVIDGFCGCGGNTIQFAA---VCQKVISIDIDPAKLRLAQHNASVYG 235
             +++  +      V D     G   I+F       +K  + DI    + + + N  +  
Sbjct: 42  GLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN 101

Query: 236 VSHKIQFIQGDFFAL----APSLQGDVVFLSPP 264
           +      I G               D V L P 
Sbjct: 102 IPEDRYEIHGMEANFFLRKEWGFGFDYVDLDPF 134

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 6/73 (8%)

Query: 181 QHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS 237
           + I S      +  V+D   G GG  +            IDI    + +A         +
Sbjct: 45  KKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERV---SGN 101

Query: 238 HKIQFIQGDFFAL 250
           +KI F   D    
Sbjct: 102 NKIIFEANDILTK 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.91
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.85
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.85
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.84
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.69
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.64
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.63
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.62
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.62
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.61
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.61
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.6
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.59
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.58
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.58
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.57
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.57
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.57
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.57
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.56
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.54
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.54
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.54
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.53
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.53
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.52
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.51
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.51
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.5
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.5
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.5
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.49
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.49
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.48
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.48
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.48
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.48
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.48
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.48
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.48
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.46
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.45
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.45
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.44
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.43
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.43
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.42
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.42
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.42
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.42
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.41
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.4
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.4
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.4
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.4
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.39
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.38
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.38
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.37
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.37
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.37
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.37
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.37
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.37
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.36
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.36
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.35
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.35
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.35
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.34
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.34
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.34
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.34
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.34
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.33
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.33
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.33
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.32
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.32
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.32
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.32
3lkd_A	542	Type I restriction-modification system methyltrans	99.32
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.31
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.31
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.31
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.3
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.3
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.3
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.3
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.3
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.3
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.29
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.29
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.29
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.29
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.29
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.29
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.29
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.29
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.29
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.29
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.28
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.28
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.28
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.27
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.26
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.26
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.26
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.26
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.25
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.25
3ocj_A	305	Putative exported protein; structural genomics, PS	99.25
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.25
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.25
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.25
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.25
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.25
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.24
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.24
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.24
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.24
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.24
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.24
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.24
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.24
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.23
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.23
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.23
3khk_A	544	Type I restriction-modification system methylation	99.23
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.22
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.22
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.22
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.22
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.22
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.22
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.21
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.21
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.21
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.21
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.2
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.2
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.2
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.2
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.19
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.19
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.19
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.19
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.19
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.19
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.18
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.18
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.18
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.18
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.18
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.17
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.17
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.17
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.17
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.17
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.17
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.17
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.17
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.16
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.16
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.16
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.16
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.16
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.15
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.15
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.14
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.14
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.14
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.14
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.14
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.13
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.13
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.13
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.12
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.12
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.11
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.11
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.11
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.11
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.1
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.1
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.09
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.09
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.09
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.09
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.09
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.09
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.09
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.08
3ufb_A	530	Type I restriction-modification system methyltran	99.08
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.08
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.08
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.08
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.08
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.07
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.07
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.07
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.07
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.05
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.05
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.05
2o07_A	304	Spermidine synthase; structural genomics, structur	99.05
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.05
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.04
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.04
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.04
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.03
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.03
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.03
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	99.02
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.02
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.02
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.02
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.02
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.02
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.01
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.01
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.01
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.01
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.01
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.0
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.98
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.97
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.95
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.95
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.93
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.92
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.92
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.91
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.91
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.9
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.89
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.85
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.85
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.83
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.82
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.82
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.81
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.81
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.8
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.78
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.78
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.77
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.77
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.75
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.75
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.73
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.71
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.7
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.69
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.68
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.68
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.68
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.67
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.65
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.63
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.63
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.63
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.62
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.62
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.58
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.58
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.58
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.5
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.49
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	98.45
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.4
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.4
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.4
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.36
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.35
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.32
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.32
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.28
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	98.21
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.2
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.17
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.17
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.13
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.08
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.08
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	98.07
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.04
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.02
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	98.0
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.94
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.86
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.86
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.79
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	97.77
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.76
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.74
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.72
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.69
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.69
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.68
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.67
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.54
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.52
3me5_A	482	Cytosine-specific methyltransferase; structural ge	97.21
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.03
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.02
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.75
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	96.64
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	96.58
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.47
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	96.24
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	95.95
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	95.48
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	93.73
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	92.93
2zig_A	297	TTHA0409, putative modification methylase; methylt	92.84
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	92.6
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.48
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	90.94
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	90.63
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	90.62
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	89.99
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	89.17
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	88.77
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	88.41
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	88.13
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	87.81
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	87.76
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	87.29
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	87.24
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	86.91
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	86.76
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	86.7
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	86.64
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	86.55
2dpm_A	284	M.dpnii 1, protein (adenine-specific methyltransfe	86.19
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	85.85
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	85.83
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	85.53
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	85.52
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	85.24
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	85.05
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	84.82
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	84.37
1yf3_A	259	DNA adenine methylase; T4DAM, methyltransferase, t	84.21
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	84.06
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	83.82
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	83.8
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	83.78
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	83.71
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	83.44
4g65_A	461	TRK system potassium uptake protein TRKA; structur	83.43
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	83.3
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	83.15
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	83.04
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	82.68
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	82.61
2g1p_A	278	DNA adenine methylase; DAM methylation, GATC recog	82.57
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	82.55
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	82.49
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	82.46
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	82.37
2dpm_A	284	M.dpnii 1, protein (adenine-specific methyltransfe	82.23
2g1p_A	278	DNA adenine methylase; DAM methylation, GATC recog	81.83
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	81.71
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	81.43
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	81.35
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	81.26
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	81.24
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	81.2
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	81.04
3cxt_A	291	Dehydrogenase with different specificities; rossma	80.85
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	80.72
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	80.7
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	80.59
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	80.48
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	80.44
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	80.4
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	80.37
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	80.34
1id1_A	153	Putative potassium channel protein; RCK domain, E.	80.33
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	80.19
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	80.08

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.91  E-value=2.1e-23  Score=186.03  Aligned_cols=192  Identities=51%  Similarity=0.933  Sum_probs=161.5

Q ss_pred             CCCChhhhcCcchhHHhhccchhhhccCcccccCCccccccCHHHHHHHHHHHhhcccccccCCCCCCHHHHHHHHHHhc
Q psy15742        108 ENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRC  187 (342)
Q Consensus       108 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~  187 (342)
                      ..+|.....++.+.++|.++...+..++.++..+..+|++.+++.++..+...+..                       .
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~   76 (241)
T 3gdh_A           20 NGLPPEIAAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQ-----------------------S   76 (241)
T ss_dssp             --CCHHHHHCGGGHHHHHTHHHHCTTGGGTCCCCHHHHHHCCCHHHHHHHHHHHHH-----------------------H
T ss_pred             CCCChhhhccHHHHHHHHhhhhhHhhccCCceecccceeecCHHHHHHHHHHHhhh-----------------------c
Confidence            35666677778899999999999999888888888889988888776666554421                       1


Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      .++.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.|++|++.+++.++++++++|+.++++..+||+|++||||++
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  156 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGG  156 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSS
T ss_pred             cCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCC
Confidence            24789999999999999999999999999999999999999999999986689999999999877779999999999998


Q ss_pred             Ccccc-ccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEE
Q psy15742        268 PEYAR-SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSF  324 (342)
Q Consensus       268 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i  324 (342)
                      ..... ...++.+++.+  ||..+++......++..+++|++....++..++.+++.+
T Consensus       157 ~~~~~~~~~~~~~~L~p--gG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~  212 (241)
T 3gdh_A          157 PDYATAETFDIRTMMSP--DGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQV  212 (241)
T ss_dssp             GGGGGSSSBCTTTSCSS--CHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCE
T ss_pred             cchhhhHHHHHHhhcCC--cceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCE
Confidence            76544 44556667766  788889988999999999999999999999988776543

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.85  E-value=1.3e-20  Score=181.53  Aligned_cols=149  Identities=17%  Similarity=0.254  Sum_probs=114.9

Q ss_pred             cCCCCCCH---HHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy15742        169 DGWYSVTP---EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG  245 (342)
Q Consensus       169 ~~~~~~~~---e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~  245 (342)
                      .+||+.++   +.+.+.+.. +.++.+|||+|||+|.+++.+|+.+.+|+|+|+|+.+++.|++|++.+|+.  ++|+++
T Consensus       268 ~~F~q~n~~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~  344 (425)
T 2jjq_A          268 NSFFQTNSYQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVA  344 (425)
T ss_dssp             TSCCCSBHHHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEEC
T ss_pred             ccccccCHHHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEEC
Confidence            45666554   344455555 667889999999999999999999899999999999999999999999984  999999


Q ss_pred             cccccCCCCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCC--HHHHHHhhCCCcE
Q psy15742        246 DFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSD--VFEIFHDSGKKGS  323 (342)
Q Consensus       246 D~~~~~~~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~l~~~~~~~~~  323 (342)
                      |+.++++. +||+|++|||+.+...                  .+++....+.++.+++++.+..  ..++..+ .  |+
T Consensus       345 d~~~~~~~-~fD~Vv~dPPr~g~~~------------------~~~~~l~~l~p~givyvsc~p~tlarDl~~l-~--y~  402 (425)
T 2jjq_A          345 SDREVSVK-GFDTVIVDPPRAGLHP------------------RLVKRLNREKPGVIVYVSCNPETFARDVKML-D--YR  402 (425)
T ss_dssp             CTTTCCCT-TCSEEEECCCTTCSCH------------------HHHHHHHHHCCSEEEEEESCHHHHHHHHHHS-S--CC
T ss_pred             ChHHcCcc-CCCEEEEcCCccchHH------------------HHHHHHHhcCCCcEEEEECChHHHHhHHhhC-e--EE
Confidence            99998755 8999999999865521                  2333334456666666643322  1223333 2  99


Q ss_pred             EEEecccCCCCCCCccccC
Q psy15742        324 FISLTGRQMFSPSQDMETV  342 (342)
Q Consensus       324 i~~i~~~~~fp~t~h~e~~  342 (342)
                      +..+.+.||||+|.|+|+|
T Consensus       403 l~~~~~~DmFP~T~HvE~v  421 (425)
T 2jjq_A          403 IDEIVALDMFPHTPHVELV  421 (425)
T ss_dssp             EEEEEEECCSTTSSCCEEE
T ss_pred             EEEEEEECcCCCCceEEEE
Confidence            9999999999999999986

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.85  E-value=3.5e-21  Score=182.72  Aligned_cols=152  Identities=14%  Similarity=0.223  Sum_probs=113.3

Q ss_pred             cCCCCCCH---HHHHHHHHHhcC-CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy15742        169 DGWYSVTP---EKVAQHIASRCK-ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ  244 (342)
Q Consensus       169 ~~~~~~~~---e~~~~~i~~~~~-~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~  244 (342)
                      .+||++++   +.+...+.+... .+.+|||+|||+|.+++.+|+.+.+|+|+|+|+.+++.|++|++.+|+ ++++|++
T Consensus       189 ~~F~Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~  267 (369)
T 3bt7_A          189 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIR  267 (369)
T ss_dssp             TSCCCSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEEC
T ss_pred             CCeecCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEE
Confidence            45677766   455666666654 367899999999999999999888999999999999999999999999 4899999


Q ss_pred             ccccccCC---C--------------CCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCC
Q psy15742        245 GDFFALAP---S--------------LQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPR  307 (342)
Q Consensus       245 ~D~~~~~~---~--------------~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (342)
                      +|+.++.+   .              ..||+|++|||+.+...                  .+++...  .++.+.+++.
T Consensus       268 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~------------------~~~~~l~--~~g~ivyvsc  327 (369)
T 3bt7_A          268 MAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDS------------------ETEKMVQ--AYPRILYISC  327 (369)
T ss_dssp             CCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCCCH------------------HHHHHHT--TSSEEEEEES
T ss_pred             CCHHHHHHHHhhccccccccccccccCCCCEEEECcCccccHH------------------HHHHHHh--CCCEEEEEEC
Confidence            99987631   1              27999999999876421                  1122221  2334444432


Q ss_pred             CCC--HHHHHHhhCCCcEEEEecccCCCCCCCccccC
Q psy15742        308 TSD--VFEIFHDSGKKGSFISLTGRQMFSPSQDMETV  342 (342)
Q Consensus       308 ~~~--~~~l~~~~~~~~~i~~i~~~~~fp~t~h~e~~  342 (342)
                      +..  ..++..+. .+|++..+.+.||||+|+|+|+|
T Consensus       328 ~p~t~ard~~~l~-~~y~~~~~~~~D~FP~T~HvE~v  363 (369)
T 3bt7_A          328 NPETLCKNLETLS-QTHKVERLALFDQFPYTHHMQCG  363 (369)
T ss_dssp             CHHHHHHHHHHHH-HHEEEEEEEEECCSTTSSCCEEE
T ss_pred             CHHHHHHHHHHHh-hCcEEEEEEeeccCCCCCcEEEE
Confidence            221  23344444 47999999999999999999985

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.84  E-value=2.2e-20  Score=180.80  Aligned_cols=153  Identities=20%  Similarity=0.275  Sum_probs=117.4

Q ss_pred             CCCCCCH---HHHHHHHHHhc--CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy15742        170 GWYSVTP---EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ  244 (342)
Q Consensus       170 ~~~~~~~---e~~~~~i~~~~--~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~  244 (342)
                      .|++.++   +.+++.+.+.+  .++.+|||+|||+|.+++.+|+.+.+|+|+|+|+.+++.|++|++.+|+. +++|++
T Consensus       262 ~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~  340 (433)
T 1uwv_A          262 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYH  340 (433)
T ss_dssp             SCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEE
T ss_pred             cccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEE
Confidence            4566553   45666666554  46789999999999999999999899999999999999999999999985 899999


Q ss_pred             ccccccCC-----CCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCC--HHHHHHh
Q psy15742        245 GDFFALAP-----SLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSD--VFEIFHD  317 (342)
Q Consensus       245 ~D~~~~~~-----~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~l~~~  317 (342)
                      +|+.+..+     ..+||+|++||||.+..                   .+++......++.+.+++.+-.  ..++..+
T Consensus       341 ~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~~-------------------~~~~~l~~~~p~~ivyvsc~p~tlard~~~l  401 (433)
T 1uwv_A          341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAA-------------------GVMQQIIKLEPIRIVYVSCNPATLARDSEAL  401 (433)
T ss_dssp             CCTTSCCSSSGGGTTCCSEEEECCCTTCCH-------------------HHHHHHHHHCCSEEEEEESCHHHHHHHHHHH
T ss_pred             CCHHHHhhhhhhhcCCCCEEEECCCCccHH-------------------HHHHHHHhcCCCeEEEEECChHHHHhhHHHH
Confidence            99988532     35799999999998763                   1122222344555555533322  2345555


Q ss_pred             hCCCcEEEEecccCCCCCCCccccC
Q psy15742        318 SGKKGSFISLTGRQMFSPSQDMETV  342 (342)
Q Consensus       318 ~~~~~~i~~i~~~~~fp~t~h~e~~  342 (342)
                      ...||++..+.+.||||+|+|+|+|
T Consensus       402 ~~~Gy~~~~~~~~d~Fp~t~HvE~v  426 (433)
T 1uwv_A          402 LKAGYTIARLAMLDMFPHTGHLESM  426 (433)
T ss_dssp             HHTTCEEEEEEEECCSTTSSCCEEE
T ss_pred             HHCCcEEEEEEEeccCCCCCeEEEE
Confidence            5679999999999999999999985

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.69  E-value=9.1e-17  Score=152.94  Aligned_cols=153  Identities=14%  Similarity=0.191  Sum_probs=118.1

Q ss_pred             cccccCCc-cccccCHHHHHHHHHHHhhcccccccCCCCCCHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEE
Q psy15742        136 EGILMDEE-SWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKV  214 (342)
Q Consensus       136 ~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v  214 (342)
                      .+++++.. ++.+.+++.++.+....                          +.+|.+|||+|||+|..++.+++.+.+|
T Consensus        65 ~~l~~p~~~~~eQat~e~vA~~~a~~--------------------------l~~g~~VLDLgcG~G~~al~LA~~g~~V  118 (410)
T 3ll7_A           65 SSLYIPSRLSLEQSSGAVTSSYKSRF--------------------------IREGTKVVDLTGGLGIDFIALMSKASQG  118 (410)
T ss_dssp             TTCCCCCHHHHHHSCCHHHHHHGGGG--------------------------SCTTCEEEESSCSSSHHHHHHHTTCSEE
T ss_pred             CCeecCCCCChhhcCHHHHHHHHHHh--------------------------cCCCCEEEEeCCCchHHHHHHHhcCCEE
Confidence            34555555 66677777666554332                          2347899999999999999999999999


Q ss_pred             EEEeCCHHHHHHHHHHHHHc--CCCCcEEEEEccccccCC---CCCccEEEEcCCCCCCccccccccccccCcCCCCchh
Q psy15742        215 ISIDIDPAKLRLAQHNASVY--GVSHKIQFIQGDFFALAP---SLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRR  289 (342)
Q Consensus       215 ~gvD~s~~~l~~a~~n~~~~--gl~~~i~~~~~D~~~~~~---~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~  289 (342)
                      +|+|+|+.+++.|++|++.+  |+ ++++++++|+.++++   ..+||+|++||||.+. ...+.+++..+.|+   ...
T Consensus       119 ~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lDPPrr~~-~~grv~~led~~P~---l~~  193 (410)
T 3ll7_A          119 IYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVDPARRSG-ADKRVYAIADCEPD---LIP  193 (410)
T ss_dssp             EEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEECCEEC------CCCCGGGEESC---HHH
T ss_pred             EEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEECCCCcCC-CCceEEehhhcCCC---HHH
Confidence            99999999999999999998  88 689999999998643   2489999999999874 23478899999986   445


Q ss_pred             hhHhhhccCCCceeecCCCCCHHHHHHhhC
Q psy15742        290 LFQVARGISPNVGYYLPRTSDVFEIFHDSG  319 (342)
Q Consensus       290 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~  319 (342)
                      +.......++..++.+++..+...+...+.
T Consensus       194 ~~~~l~~~~~~~~vK~sP~ld~~~~~~~l~  223 (410)
T 3ll7_A          194 LATELLPFCSSILAKLSPMIDLWDTLQSLL  223 (410)
T ss_dssp             HHHHHGGGSSEEEEEECTTSCHHHHHHHCS
T ss_pred             HHHHHHhhCCcEEEEcCCCCChHHHHhhCC
Confidence            555555667788889999999986665544

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.64  E-value=4.4e-16  Score=158.71  Aligned_cols=146  Identities=14%  Similarity=0.186  Sum_probs=100.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccC--CCCCccEEEEcCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA--PSLQGDVVFLSPP  264 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~--~~~~~D~Ii~nPP  264 (342)
                      +|.+|||+|||||.+++.++..+ .+|+++|+|+.+++.|++|++.+|++ ++++++++|+.++.  ...+||+|++|||
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP  618 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP  618 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence            37899999999999999999874 56999999999999999999999996 58999999999864  3468999999999


Q ss_pred             CCCCcccc-ccccccccCcCCCCchhhhHhhhccCCCceeecCCCC---CHHHHHHhhCCCcEEEEecccCC---CCCCC
Q psy15742        265 WGGPEYAR-SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTS---DVFEIFHDSGKKGSFISLTGRQM---FSPSQ  337 (342)
Q Consensus       265 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~l~~~~~~~~~i~~i~~~~~---fp~t~  337 (342)
                      +...+-.. ..++....+..     .+....+.+.+++.++++.+.   ... ...+...++++..++...+   |+.+.
T Consensus       619 ~f~~~~~~~~~~~~~~~~~~-----ll~~a~~~LkpgG~L~~s~~~~~~~~~-~~~l~~~g~~~~~i~~~~lp~df~~~~  692 (703)
T 3v97_A          619 TFSNSKRMEDAFDVQRDHLA-----LMKDLKRLLRAGGTIMFSNNKRGFRMD-LDGLAKLGLKAQEITQKTLSQDFARNR  692 (703)
T ss_dssp             SBC-------CCBHHHHHHH-----HHHHHHHHEEEEEEEEEEECCTTCCCC-HHHHHHTTEEEEECTTTTCCGGGTTCS
T ss_pred             cccCCccchhHHHHHHHHHH-----HHHHHHHhcCCCcEEEEEECCcccccC-HHHHHHcCCceeeeeeccCCCCCCCCC
Confidence            75432110 11111111111     344555667777777775444   221 2222234677667766654   66655


Q ss_pred             ccc
Q psy15742        338 DME  340 (342)
Q Consensus       338 h~e  340 (342)
                      +++
T Consensus       693 ~ih  695 (703)
T 3v97_A          693 QIH  695 (703)
T ss_dssp             SCC
T ss_pred             cce
Confidence            554

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.63  E-value=2.5e-15  Score=143.13  Aligned_cols=80  Identities=18%  Similarity=0.188  Sum_probs=70.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccccCC-----CCCccEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFALAP-----SLQGDVVF  260 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~-~i~~~~~D~~~~~~-----~~~~D~Ii  260 (342)
                      .++.+|||+|||+|.+++.+|+.+ .+|+|+|+|+.+++.|++|++.+|+++ +++++++|+.++.+     ..+||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            457899999999999999999964 599999999999999999999999965 89999999988642     34899999


Q ss_pred             EcCCCCC
Q psy15742        261 LSPPWGG  267 (342)
Q Consensus       261 ~nPP~~~  267 (342)
                      +|||+.+
T Consensus       291 ~DPP~~~  297 (385)
T 2b78_A          291 IDPPSFA  297 (385)
T ss_dssp             ECCCCC-
T ss_pred             ECCCCCC
Confidence            9999864

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.62  E-value=4.4e-16  Score=147.93  Aligned_cols=120  Identities=18%  Similarity=0.298  Sum_probs=90.6

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC----------------------------------------CEEEEEeCCHHHHHHH
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC----------------------------------------QKVISIDIDPAKLRLA  227 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~----------------------------------------~~v~gvD~s~~~l~~a  227 (342)
                      +++..++|++||+|++++++|..+                                        .+|+|+|+|+.+++.|
T Consensus       193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A  272 (384)
T 3ldg_A          193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA  272 (384)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence            457899999999999999999763                                        3499999999999999


Q ss_pred             HHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCC
Q psy15742        228 QHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPR  307 (342)
Q Consensus       228 ~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (342)
                      ++|++.+|+.++++++++|+.++....+||+|++||||+..  .....++..+++.      +.+..+......++++..
T Consensus       273 r~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~r--l~~~~~l~~ly~~------lg~~lk~~~g~~~~iit~  344 (384)
T 3ldg_A          273 RKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGER--LLDDKAVDILYNE------MGETFAPLKTWSQFILTN  344 (384)
T ss_dssp             HHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTT--TSCHHHHHHHHHH------HHHHHTTCTTSEEEEEES
T ss_pred             HHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhc--cCCHHHHHHHHHH------HHHHHhhCCCcEEEEEEC
Confidence            99999999987899999999998766689999999999865  2222333333332      222333345566666666


Q ss_pred             CCCHHHHH
Q psy15742        308 TSDVFEIF  315 (342)
Q Consensus       308 ~~~~~~l~  315 (342)
                      +....+..
T Consensus       345 ~~~l~~~~  352 (384)
T 3ldg_A          345 DTDFEQKF  352 (384)
T ss_dssp             CTTHHHHH
T ss_pred             CHHHHHHh
Confidence            66655444

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.62  E-value=6e-15  Score=134.79  Aligned_cols=127  Identities=17%  Similarity=0.162  Sum_probs=91.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCc---cEEEEcCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG---DVVFLSPP  264 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~---D~Ii~nPP  264 (342)
                      ++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|++.+|+.++++++++|+.+..+ ++|   |+|++|||
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-~~f~~~D~IvsnPP  201 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-EKFASIEMILSNPP  201 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-GGTTTCCEEEECCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-cccCCCCEEEEcCC
Confidence            4679999999999999999998 889999999999999999999999997679999999998654 478   99999999


Q ss_pred             CCCCccccccccccccCcC------CCCchhhhHhh-hccCCCceeecC-CCCCHHHHHHhh
Q psy15742        265 WGGPEYARSSFSIDNIFPE------QGGGRRLFQVA-RGISPNVGYYLP-RTSDVFEIFHDS  318 (342)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~l~-~~~~~~~l~~~~  318 (342)
                      |..... ....++. +.|.      .++...+..+. +.+.+++.+++. .......+..++
T Consensus       202 yi~~~~-~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~  261 (284)
T 1nv8_A          202 YVKSSA-HLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIV  261 (284)
T ss_dssp             CBCGGG-SCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTS
T ss_pred             CCCccc-ccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHH
Confidence            997653 2111222 2221      01223445555 566677666662 233344444444

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.61  E-value=6.8e-16  Score=132.20  Aligned_cols=79  Identities=18%  Similarity=0.307  Sum_probs=71.0

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPP  264 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nPP  264 (342)
                      ++.+|||+|||+|.+++.++.. +.+|+|+|+|+.+++.|++|++.+++ ++++++++|+.+++   +..+||+|++|||
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p  122 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADPP  122 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECCC
Confidence            5789999999999999988877 45899999999999999999999998 68999999998874   3568999999999


Q ss_pred             CCCC
Q psy15742        265 WGGP  268 (342)
Q Consensus       265 ~~~~  268 (342)
                      |+..
T Consensus       123 ~~~~  126 (189)
T 3p9n_A          123 YNVD  126 (189)
T ss_dssp             TTSC
T ss_pred             CCcc
Confidence            9874

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.61  E-value=4e-15  Score=141.87  Aligned_cols=120  Identities=23%  Similarity=0.305  Sum_probs=90.6

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC----------------------------------------CEEEEEeCCHHHHHHH
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC----------------------------------------QKVISIDIDPAKLRLA  227 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~----------------------------------------~~v~gvD~s~~~l~~a  227 (342)
                      +++..|||++||+|++++++|..+                                        .+|+|+|+|+.+++.|
T Consensus       200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A  279 (393)
T 3k0b_A          200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA  279 (393)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence            347799999999999999999863                                        3499999999999999


Q ss_pred             HHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCC
Q psy15742        228 QHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPR  307 (342)
Q Consensus       228 ~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (342)
                      +.|+..+|+.++++++++|+.+.....+||+|++||||+..-  ....++..++..      +.+..+......++++..
T Consensus       280 r~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl--~~~~~l~~ly~~------lg~~lk~~~g~~~~iit~  351 (393)
T 3k0b_A          280 KQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERL--EDEEAVRQLYRE------MGIVYKRMPTWSVYVLTS  351 (393)
T ss_dssp             HHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSH--HHHHHHHHHHHH------HHHHHHTCTTCEEEEEEC
T ss_pred             HHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCcccc--CCchhHHHHHHH------HHHHHhcCCCCEEEEEEC
Confidence            999999999778999999999987667899999999998651  111223333332      222333355666777766


Q ss_pred             CCCHHHHH
Q psy15742        308 TSDVFEIF  315 (342)
Q Consensus       308 ~~~~~~l~  315 (342)
                      +....+..
T Consensus       352 ~~~l~~~~  359 (393)
T 3k0b_A          352 YELFEEVY  359 (393)
T ss_dssp             CTTHHHHH
T ss_pred             CHHHHHHh
Confidence            66665444

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.60  E-value=7.7e-15  Score=132.09  Aligned_cols=146  Identities=14%  Similarity=0.115  Sum_probs=95.0

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC---CCCccEEEEcCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVFLSPP  264 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~---~~~~D~Ii~nPP  264 (342)
                      ++.+|||+|||+|.+++.+++.+. +|+|+|+++.+++.|++|+..+++.++++++++|+.++..   ..+||+|++|||
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP  128 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP  128 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence            578999999999999999998844 9999999999999999999999998789999999998763   568999999999


Q ss_pred             CCCCcccc-----ccccccccCcCCCCchhhhHhhhccCCCceeec-CCCCCHHHHHHhh-CCCcEEEEecccCCCC
Q psy15742        265 WGGPEYAR-----SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL-PRTSDVFEIFHDS-GKKGSFISLTGRQMFS  334 (342)
Q Consensus       265 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~l~~~~-~~~~~i~~i~~~~~fp  334 (342)
                      |.......     ....+........-...+..+.+.+.+++.+++ .+.....++...+ ..++.+..+.+..-.+
T Consensus       129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~  205 (259)
T 3lpm_A          129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKRIQFVHPRS  205 (259)
T ss_dssp             C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEEEEEEESST
T ss_pred             CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEEEEEeecCC
Confidence            97541111     001111111000001133445555666655544 3334444454443 3467777666554333

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.59  E-value=6.4e-15  Score=140.16  Aligned_cols=120  Identities=27%  Similarity=0.385  Sum_probs=90.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC----------------------------------------CEEEEEeCCHHHHHHH
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC----------------------------------------QKVISIDIDPAKLRLA  227 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~----------------------------------------~~v~gvD~s~~~l~~a  227 (342)
                      .++.+|||+|||+|++++++|..+                                        .+|+|+|+|+.+++.|
T Consensus       194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A  273 (385)
T 3ldu_A          194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA  273 (385)
T ss_dssp             CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence            347899999999999999998863                                        4699999999999999


Q ss_pred             HHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCC
Q psy15742        228 QHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPR  307 (342)
Q Consensus       228 ~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (342)
                      +.|+..+|+.+++++.++|+.++....+||+|++||||+..-  ....++..++..      +-+..+......++++..
T Consensus       274 r~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl--~~~~~l~~ly~~------lg~~lk~~~g~~~~iit~  345 (385)
T 3ldu_A          274 RENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERL--EDKDSVKQLYKE------LGYAFRKLKNWSYYLITS  345 (385)
T ss_dssp             HHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSH--HHHHHHHHHHHH------HHHHHHTSBSCEEEEEES
T ss_pred             HHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCcc--CCHHHHHHHHHH------HHHHHhhCCCCEEEEEEC
Confidence            999999999778999999999987667899999999998642  112223333332      222333355666777766


Q ss_pred             CCCHHHHH
Q psy15742        308 TSDVFEIF  315 (342)
Q Consensus       308 ~~~~~~l~  315 (342)
                      +.......
T Consensus       346 ~~~l~~~~  353 (385)
T 3ldu_A          346 YEDFEYEF  353 (385)
T ss_dssp             CTTHHHHH
T ss_pred             CHHHHHhh
Confidence            66655444

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.58  E-value=5.4e-15  Score=134.30  Aligned_cols=78  Identities=22%  Similarity=0.241  Sum_probs=70.3

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  264 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP  264 (342)
                      +.++.+|||+|||+|.+++.+|+.+  .+|+|+|+|+.+++.|++|++.+++. ++.++++|+.+.....+||+|++|||
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~~~~~D~Vi~d~p  195 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVELKDVADRVIMGYV  195 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCCTTCEEEEEECCC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCccCCceEEEECCc
Confidence            4568899999999999999999984  49999999999999999999999985 78999999998833458999999999


Q ss_pred             C
Q psy15742        265 W  265 (342)
Q Consensus       265 ~  265 (342)
                      +
T Consensus       196 ~  196 (272)
T 3a27_A          196 H  196 (272)
T ss_dssp             S
T ss_pred             c
Confidence            7

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.58  E-value=9.9e-15  Score=132.95  Aligned_cols=84  Identities=21%  Similarity=0.283  Sum_probs=75.5

Q ss_pred             HHhcCCCCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742        184 ASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  262 (342)
Q Consensus       184 ~~~~~~~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n  262 (342)
                      ...++++.+|||+|||+|.+++.+|+.+. +|+|+|+|+.+++.|++|++.+++.++++++++|+.+++...+||+|++|
T Consensus       120 ~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~  199 (278)
T 2frn_A          120 AKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG  199 (278)
T ss_dssp             HHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred             HHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEEC
Confidence            34456788999999999999999999865 69999999999999999999999976799999999998877799999999


Q ss_pred             CCCCC
Q psy15742        263 PPWGG  267 (342)
Q Consensus       263 PP~~~  267 (342)
                      ||+..
T Consensus       200 ~p~~~  204 (278)
T 2frn_A          200 YVVRT  204 (278)
T ss_dssp             CCSSG
T ss_pred             CchhH
Confidence            99654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.57  E-value=1.9e-15  Score=128.53  Aligned_cols=79  Identities=25%  Similarity=0.370  Sum_probs=70.5

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----CCCccEEEEc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----SLQGDVVFLS  262 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----~~~~D~Ii~n  262 (342)
                      ++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.+++.|++|+..+++.++++++++|+.+..+     ..+||+|++|
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~  123 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD  123 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence            47799999999999999988874 79999999999999999999999986689999999988542     5689999999


Q ss_pred             CCCCC
Q psy15742        263 PPWGG  267 (342)
Q Consensus       263 PP~~~  267 (342)
                      |||+.
T Consensus       124 ~~~~~  128 (187)
T 2fhp_A          124 PPYAK  128 (187)
T ss_dssp             CCGGG
T ss_pred             CCCCc
Confidence            99863

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.57  E-value=2.3e-15  Score=130.50  Aligned_cols=78  Identities=23%  Similarity=0.360  Sum_probs=69.2

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccCC---CCC-ccEEEEc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALAP---SLQ-GDVVFLS  262 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~~---~~~-~D~Ii~n  262 (342)
                      ++.+|||+|||+|.+++.++..+ .+|+|+|+|+.+++.|++|++.+++. ++++++++|+.++.+   ..+ ||+|++|
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            47799999999999999877764 69999999999999999999999984 589999999988753   457 9999999


Q ss_pred             CCCC
Q psy15742        263 PPWG  266 (342)
Q Consensus       263 PP~~  266 (342)
                      |||+
T Consensus       133 ~~~~  136 (201)
T 2ift_A          133 PPFH  136 (201)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            9986

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.57  E-value=8.9e-15  Score=138.75  Aligned_cols=82  Identities=32%  Similarity=0.352  Sum_probs=73.6

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~--~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nP  263 (342)
                      .+++.+|||+|||+|.+++.+|..+.  +|+|+|+|+.+++.|++|++.+|+.++++++++|+.+++ +..+||+|++||
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np  294 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL  294 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence            45688999999999999999999866  999999999999999999999999778999999999986 346899999999


Q ss_pred             CCCCC
Q psy15742        264 PWGGP  268 (342)
Q Consensus       264 P~~~~  268 (342)
                      ||+..
T Consensus       295 Pyg~r  299 (373)
T 3tm4_A          295 PYGLK  299 (373)
T ss_dssp             CCC--
T ss_pred             CCCcc
Confidence            99864

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.57  E-value=1.3e-14  Score=131.64  Aligned_cols=88  Identities=22%  Similarity=0.285  Sum_probs=79.3

Q ss_pred             HHHHhcCCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEE
Q psy15742        182 HIASRCKASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVF  260 (342)
Q Consensus       182 ~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii  260 (342)
                      .+...+++|.+|||+|||+|.+++.+|+.+ .+|+++|+|+.+++.+++|++.||+.++++++++|+.++...+.||.|+
T Consensus       118 ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi  197 (278)
T 3k6r_A          118 RMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRIL  197 (278)
T ss_dssp             HHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEE
T ss_pred             HHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEE
Confidence            345556789999999999999999999885 6999999999999999999999999889999999999998888999999


Q ss_pred             EcCCCCCCc
Q psy15742        261 LSPPWGGPE  269 (342)
Q Consensus       261 ~nPP~~~~~  269 (342)
                      +|||+....
T Consensus       198 ~~~p~~~~~  206 (278)
T 3k6r_A          198 MGYVVRTHE  206 (278)
T ss_dssp             ECCCSSGGG
T ss_pred             ECCCCcHHH
Confidence            999976543

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.56  E-value=6e-15  Score=137.67  Aligned_cols=81  Identities=21%  Similarity=0.270  Sum_probs=71.9

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccccCC-----CCCccEEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFALAP-----SLQGDVVFL  261 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~-~i~~~~~D~~~~~~-----~~~~D~Ii~  261 (342)
                      .++.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.|++|++.+++++ +++++++|+.++.+     ..+||+|++
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~  231 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  231 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence            357799999999999999999987799999999999999999999999865 59999999988753     458999999


Q ss_pred             cCCCCCC
Q psy15742        262 SPPWGGP  268 (342)
Q Consensus       262 nPP~~~~  268 (342)
                      |||+.+.
T Consensus       232 dPP~~~~  238 (332)
T 2igt_A          232 DPPKFGR  238 (332)
T ss_dssp             CCCSEEE
T ss_pred             CCccccC
Confidence            9996543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.54  E-value=5.8e-14  Score=127.54  Aligned_cols=88  Identities=23%  Similarity=0.359  Sum_probs=75.7

Q ss_pred             HHHHHhc-CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCcc
Q psy15742        181 QHIASRC-KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD  257 (342)
Q Consensus       181 ~~i~~~~-~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D  257 (342)
                      +.+...+ .++.+|||+|||+|.+++.+++.  +.+|+|+|+|+.+++.|++|+..++++ +++++++|+.+..+.++||
T Consensus       100 ~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~fD  178 (276)
T 2b3t_A          100 EQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALAGQQFA  178 (276)
T ss_dssp             HHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGTTCCEE
T ss_pred             HHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhcccCCcc
Confidence            3333333 35779999999999999999976  689999999999999999999999985 7999999999876567899


Q ss_pred             EEEEcCCCCCCc
Q psy15742        258 VVFLSPPWGGPE  269 (342)
Q Consensus       258 ~Ii~nPP~~~~~  269 (342)
                      +|++||||....
T Consensus       179 ~Iv~npPy~~~~  190 (276)
T 2b3t_A          179 MIVSNPPYIDEQ  190 (276)
T ss_dssp             EEEECCCCBCTT
T ss_pred             EEEECCCCCCcc
Confidence            999999998764

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.54  E-value=4.2e-14  Score=135.16  Aligned_cols=135  Identities=18%  Similarity=0.192  Sum_probs=95.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEEccccccCC-----CCCccEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGV-SHKIQFIQGDFFALAP-----SLQGDVVF  260 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl-~~~i~~~~~D~~~~~~-----~~~~D~Ii  260 (342)
                      .++.+|||+|||+|++++.+|+. +.+|+|+|+|+.+++.|++|++.+|+ +++++++++|+.++.+     ..+||+|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            45789999999999999999998 46999999999999999999999998 6689999999988753     45899999


Q ss_pred             EcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec---CCCCCHHH-------HHHhhCCCcEEEEec
Q psy15742        261 LSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL---PRTSDVFE-------IFHDSGKKGSFISLT  328 (342)
Q Consensus       261 ~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~-------l~~~~~~~~~i~~i~  328 (342)
                      +|||+...+..    .+......  -...+....+.+.+++.+++   +.+.....       .....+..+++....
T Consensus       299 ~dpP~~~~~~~----~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~~  370 (396)
T 3c0k_A          299 MDPPKFVENKS----QLMGACRG--YKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQF  370 (396)
T ss_dssp             ECCSSTTTCSS----SSSCCCTH--HHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             ECCCCCCCChh----HHHHHHHH--HHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEEC
Confidence            99998765321    11111111  01134445666777766666   33444332       222334556666544

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.54  E-value=2.6e-14  Score=133.63  Aligned_cols=83  Identities=29%  Similarity=0.447  Sum_probs=74.6

Q ss_pred             HHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742        183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  262 (342)
Q Consensus       183 i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n  262 (342)
                      +...+.++.+|||+|||+|.+++. |+.+.+|+|+|+|+.+++.|++|++.+|+.++++++++|+.++.  .+||+|++|
T Consensus       189 i~~~~~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~Vi~d  265 (336)
T 2yx1_A          189 IMKKVSLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNRVIMN  265 (336)
T ss_dssp             HHHHCCTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEEEEEC
T ss_pred             HHHhcCCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcEEEEC
Confidence            344556788999999999999999 88888999999999999999999999999768999999999987  689999999


Q ss_pred             CCCCCC
Q psy15742        263 PPWGGP  268 (342)
Q Consensus       263 PP~~~~  268 (342)
                      ||+...
T Consensus       266 pP~~~~  271 (336)
T 2yx1_A          266 LPKFAH  271 (336)
T ss_dssp             CTTTGG
T ss_pred             CcHhHH
Confidence            997644

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.53  E-value=2.6e-14  Score=123.88  Aligned_cols=78  Identities=15%  Similarity=0.294  Sum_probs=69.1

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEEcCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPW  265 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~nPP~  265 (342)
                      ++.+|||+|||+|.+++.++..+ .+|+|+|+|+.+++.|++|++.+++ ++++++++|+.++.  ...+||+|++||||
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~  132 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPF  132 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence            47799999999999999877764 6999999999999999999999998 58999999998854  34589999999998


Q ss_pred             CC
Q psy15742        266 GG  267 (342)
Q Consensus       266 ~~  267 (342)
                      +.
T Consensus       133 ~~  134 (202)
T 2fpo_A          133 RR  134 (202)
T ss_dssp             ST
T ss_pred             CC
Confidence            74

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.53  E-value=8.5e-15  Score=122.53  Aligned_cols=76  Identities=21%  Similarity=0.387  Sum_probs=68.9

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----CCCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----SLQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----~~~~D~Ii~nP  263 (342)
                      ++.+|||+|||+|.++..+++.+..|+|+|+|+.+++.|++|+..+++  +++++++|+.+..+     ..+||+|++||
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            578999999999999999999888899999999999999999999987  79999999987532     23799999999


Q ss_pred             CCC
Q psy15742        264 PWG  266 (342)
Q Consensus       264 P~~  266 (342)
                      ||+
T Consensus       119 ~~~  121 (171)
T 1ws6_A          119 PYA  121 (171)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            997

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.52  E-value=1.7e-13  Score=120.69  Aligned_cols=82  Identities=15%  Similarity=0.176  Sum_probs=70.9

Q ss_pred             hcCCCCeEEeccCC-CcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc--CCCCCccEEEE
Q psy15742        186 RCKASDVVIDGFCG-CGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL--APSLQGDVVFL  261 (342)
Q Consensus       186 ~~~~~~~vLDlgcG-tG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~--~~~~~~D~Ii~  261 (342)
                      .++++.+|||+||| +|.+++.+++. +.+|+|+|+|+.+++.|++|+..+++  +++++++|+...  .++.+||+|++
T Consensus        52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~  129 (230)
T 3evz_A           52 FLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFS  129 (230)
T ss_dssp             TCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred             hcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEE
Confidence            34678899999999 99999999998 89999999999999999999999998  799999996433  24478999999


Q ss_pred             cCCCCCCc
Q psy15742        262 SPPWGGPE  269 (342)
Q Consensus       262 nPP~~~~~  269 (342)
                      ||||....
T Consensus       130 npp~~~~~  137 (230)
T 3evz_A          130 APPYYDKP  137 (230)
T ss_dssp             CCCCC---
T ss_pred             CCCCcCCc
Confidence            99998754

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.51  E-value=8.6e-14  Score=120.52  Aligned_cols=76  Identities=22%  Similarity=0.360  Sum_probs=69.3

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++|+..+++  +++++++|+.+++  .+||+|++||||+.
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~D~v~~~~p~~~  124 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--SRVDIVIMNPPFGS  124 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC--CCCSEEEECCCCSS
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC--CCCCEEEEcCCCcc
Confidence            57899999999999999999884 5799999999999999999999887  7999999999874  48999999999986


Q ss_pred             C
Q psy15742        268 P  268 (342)
Q Consensus       268 ~  268 (342)
                      .
T Consensus       125 ~  125 (207)
T 1wy7_A          125 Q  125 (207)
T ss_dssp             S
T ss_pred             c
Confidence            5

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.51  E-value=5.7e-14  Score=132.22  Aligned_cols=91  Identities=27%  Similarity=0.346  Sum_probs=76.3

Q ss_pred             HHHHHHHHHh--cCCCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC
Q psy15742        177 EKVAQHIASR--CKASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA  251 (342)
Q Consensus       177 e~~~~~i~~~--~~~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~  251 (342)
                      +.+...+...  .+++.+|||+|||+|++++.+|..+   .+++|+|+|+.+++.|++|++.+|++ +++++++|+.+++
T Consensus       189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~  267 (354)
T 3tma_A          189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLP  267 (354)
T ss_dssp             HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGG
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCc
Confidence            3344444433  3467899999999999999999964   89999999999999999999999996 8999999999976


Q ss_pred             -CCCCccEEEEcCCCCCC
Q psy15742        252 -PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       252 -~~~~~D~Ii~nPP~~~~  268 (342)
                       +...||+|++||||+..
T Consensus       268 ~~~~~~D~Ii~npPyg~r  285 (354)
T 3tma_A          268 RFFPEVDRILANPPHGLR  285 (354)
T ss_dssp             GTCCCCSEEEECCCSCC-
T ss_pred             cccCCCCEEEECCCCcCc
Confidence             34568999999999864

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.50  E-value=5.2e-14  Score=129.50  Aligned_cols=79  Identities=27%  Similarity=0.394  Sum_probs=67.5

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++|+..+++ ++++++++|+.+.+. .+||+|++||||..
T Consensus        41 ~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~-~~~D~Vv~n~py~~  118 (299)
T 2h1r_A           41 KSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF-PKFDVCTANIPYKI  118 (299)
T ss_dssp             CTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC-CCCSEEEEECCGGG
T ss_pred             CCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc-ccCCEEEEcCCccc
Confidence            4578999999999999999999888999999999999999999988887 589999999988754 37999999999976


Q ss_pred             C
Q psy15742        268 P  268 (342)
Q Consensus       268 ~  268 (342)
                      .
T Consensus       119 ~  119 (299)
T 2h1r_A          119 S  119 (299)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.50  E-value=1.4e-13  Score=123.23  Aligned_cols=81  Identities=15%  Similarity=0.094  Sum_probs=68.9

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc----cCC---CCCccEE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA----LAP---SLQGDVV  259 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~----~~~---~~~~D~I  259 (342)
                      ++.+|||+|||+|.+++.++..  +.+|+|+|+|+.+++.|++|++.+++.++++++++|+.+    ..+   +.+||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            4679999999999999999876  789999999999999999999999997679999999765    222   2579999


Q ss_pred             EEcCCCCCCc
Q psy15742        260 FLSPPWGGPE  269 (342)
Q Consensus       260 i~nPP~~~~~  269 (342)
                      ++||||....
T Consensus       145 ~~npp~~~~~  154 (254)
T 2h00_A          145 MCNPPFFANQ  154 (254)
T ss_dssp             EECCCCC---
T ss_pred             EECCCCccCc
Confidence            9999998653

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.50  E-value=1.2e-13  Score=117.49  Aligned_cols=84  Identities=18%  Similarity=0.229  Sum_probs=71.5

Q ss_pred             HHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEE
Q psy15742        183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVF  260 (342)
Q Consensus       183 i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii  260 (342)
                      +...++++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++|++.+|+ ++++++++|..++.  .+.+||+|+
T Consensus        16 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~   94 (185)
T 3mti_A           16 LAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAI   94 (185)
T ss_dssp             HHTTCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEE
T ss_pred             HHHhCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEE
Confidence            334567789999999999999999999899999999999999999999999998 68999998887742  356899999


Q ss_pred             EcCCCCC
Q psy15742        261 LSPPWGG  267 (342)
Q Consensus       261 ~nPP~~~  267 (342)
                      +|++|..
T Consensus        95 ~~~~~~~  101 (185)
T 3mti_A           95 FNLGYLP  101 (185)
T ss_dssp             EEEC---
T ss_pred             EeCCCCC
Confidence            9987654

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.49  E-value=1.1e-13  Score=124.87  Aligned_cols=81  Identities=19%  Similarity=0.246  Sum_probs=70.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHH---cCCCCcEEEEEccccccC--------CCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASV---YGVSHKIQFIQGDFFALA--------PSL  254 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~---~gl~~~i~~~~~D~~~~~--------~~~  254 (342)
                      .++.+|||+|||+|.+++.+++.  +.+|+|+|+++.+++.|++|+..   +++.++++++++|+.++.        +..
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  114 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE  114 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence            34779999999999999999987  47999999999999999999998   888768999999998872        356


Q ss_pred             CccEEEEcCCCCCC
Q psy15742        255 QGDVVFLSPPWGGP  268 (342)
Q Consensus       255 ~~D~Ii~nPP~~~~  268 (342)
                      +||+|++||||...
T Consensus       115 ~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A          115 HFHHVIMNPPYNDA  128 (260)
T ss_dssp             CEEEEEECCCC---
T ss_pred             CcCEEEECCCCcCC
Confidence            89999999999865

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.49  E-value=5.1e-14  Score=118.89  Aligned_cols=78  Identities=19%  Similarity=0.315  Sum_probs=69.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEEcCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPW  265 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~nPP~  265 (342)
                      ++.+|||+|||+|.+++.+++. ..+|+|+|+|+.+++.|++|++.+++.++++++++|+.+..  ....||+|++||||
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~  110 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY  110 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC
Confidence            5789999999999999999988 46999999999999999999999998668999999998853  23579999999998


Q ss_pred             C
Q psy15742        266 G  266 (342)
Q Consensus       266 ~  266 (342)
                      +
T Consensus       111 ~  111 (177)
T 2esr_A          111 A  111 (177)
T ss_dssp             H
T ss_pred             C
Confidence            5

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.48  E-value=1.2e-13  Score=131.42  Aligned_cols=110  Identities=18%  Similarity=0.270  Sum_probs=84.1

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----CCCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----SLQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----~~~~D~Ii~nP  263 (342)
                      ++.+|||+|||+|.+++.+|+.+.+|+|+|+|+.+++.|++|++.+|++ +++++++|+.++.+     ..+||+|++||
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp  287 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVLDP  287 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence            5789999999999999999998889999999999999999999999995 59999999988753     46899999999


Q ss_pred             CCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        264 PWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       264 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      |+.+.+..    .+......  -...+..+.+.+.+++.+++
T Consensus       288 P~~~~~~~----~~~~~~~~--~~~~l~~~~~~LkpgG~l~~  323 (382)
T 1wxx_A          288 PAFAKGKK----DVERAYRA--YKEVNLRAIKLLKEGGILAT  323 (382)
T ss_dssp             CCSCCSTT----SHHHHHHH--HHHHHHHHHHTEEEEEEEEE
T ss_pred             CCCCCChh----HHHHHHHH--HHHHHHHHHHhcCCCCEEEE
Confidence            98664321    11111110  01134445566677766665

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.48  E-value=6.7e-14  Score=133.75  Aligned_cols=82  Identities=33%  Similarity=0.466  Sum_probs=73.0

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----CCCccEEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----SLQGDVVFL  261 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----~~~~D~Ii~  261 (342)
                      +++.+|||+|||+|.+++.+|+. +.+|+|+|+|+.+++.|++|++.+|+.++++++++|+.+..+     ..+||+|++
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            36889999999999999999998 469999999999999999999999996589999999988642     468999999


Q ss_pred             cCCCCCCc
Q psy15742        262 SPPWGGPE  269 (342)
Q Consensus       262 nPP~~~~~  269 (342)
                      |||+...+
T Consensus       296 dpP~~~~~  303 (396)
T 2as0_A          296 DPPAFVQH  303 (396)
T ss_dssp             CCCCSCSS
T ss_pred             CCCCCCCC
Confidence            99987653

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.48  E-value=1.2e-13  Score=121.38  Aligned_cols=142  Identities=13%  Similarity=0.165  Sum_probs=100.5

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc----CCCCCccEEEEc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL----APSLQGDVVFLS  262 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~----~~~~~~D~Ii~n  262 (342)
                      ++.+|||+|||+|.+++.+|+.  ...|+|+|+|+.+++.|++|+..+|+. +++++++|+.+.    .++++||.|+++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            3679999999999999999987  568999999999999999999999984 799999999875    456799999998


Q ss_pred             --CCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCC--HHHHHHhhCCCcEEEEecccCCCCCCCc
Q psy15742        263 --PPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSD--VFEIFHDSGKKGSFISLTGRQMFSPSQD  338 (342)
Q Consensus       263 --PP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~l~~~~~~~~~i~~i~~~~~fp~t~h  338 (342)
                        +||.......     .++..    ...+..+.+.+.+++.+++..+..  ...+...+........+...+.|+++++
T Consensus       113 ~~~p~~~~~~~~-----rr~~~----~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (218)
T 3dxy_A          113 FPDPWHKARHNK-----RRIVQ----VPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSESNDYVPRPA  183 (218)
T ss_dssp             SCCCCCSGGGGG-----GSSCS----HHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEECCTTSSCBCCCT
T ss_pred             CCCCccchhhhh-----hhhhh----HHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCcccccCcCccCCCCC
Confidence              6665432111     11111    114555667788888877744433  2334443333333445555667777776


Q ss_pred             cc
Q psy15742        339 ME  340 (342)
Q Consensus       339 ~e  340 (342)
                      .+
T Consensus       184 ~~  185 (218)
T 3dxy_A          184 SR  185 (218)
T ss_dssp             TS
T ss_pred             CC
Confidence            54

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.48  E-value=1.7e-13  Score=130.59  Aligned_cols=80  Identities=19%  Similarity=0.238  Sum_probs=69.0

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEEcCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPP  264 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~nPP  264 (342)
                      .++|.+|||+|||||.+++.+|+.|..|+|+|+|+.+++.|++|++.+|+.  .++.++|+.++++  .+.||+|++|||
T Consensus       212 ~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~--~~~~~~D~~~~l~~~~~~fD~Ii~dpP  289 (393)
T 4dmg_A          212 VRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLR--VDIRHGEALPTLRGLEGPFHHVLLDPP  289 (393)
T ss_dssp             CCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred             hcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCC--CcEEEccHHHHHHHhcCCCCEEEECCC
Confidence            345889999999999999999999888999999999999999999999985  3577999988741  234999999999


Q ss_pred             CCCC
Q psy15742        265 WGGP  268 (342)
Q Consensus       265 ~~~~  268 (342)
                      +...
T Consensus       290 ~f~~  293 (393)
T 4dmg_A          290 TLVK  293 (393)
T ss_dssp             CCCS
T ss_pred             cCCC
Confidence            7443

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.48  E-value=3.5e-13  Score=127.73  Aligned_cols=80  Identities=16%  Similarity=0.253  Sum_probs=70.5

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCC--cEEEEEccccccCCCCCccEEEEcCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSH--KIQFIQGDFFALAPSLQGDVVFLSPP  264 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~--~i~~~~~D~~~~~~~~~~D~Ii~nPP  264 (342)
                      ++.+|||+|||+|.+++.+++.  +.+|+|+|+|+.+++.|++|+..+|+.+  +++++.+|+.+..+.++||+|++|||
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~npp  301 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPP  301 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECCC
T ss_pred             CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECCC
Confidence            3579999999999999999998  6899999999999999999999999753  58899999998777779999999999


Q ss_pred             CCCC
Q psy15742        265 WGGP  268 (342)
Q Consensus       265 ~~~~  268 (342)
                      |+..
T Consensus       302 fh~~  305 (375)
T 4dcm_A          302 FHQQ  305 (375)
T ss_dssp             C---
T ss_pred             cccC
Confidence            9864

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.48  E-value=2.6e-13  Score=128.87  Aligned_cols=78  Identities=21%  Similarity=0.245  Sum_probs=71.9

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC-CCccEEEEcCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-LQGDVVFLSPPWGG  267 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~-~~~D~Ii~nPP~~~  267 (342)
                      ++.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.|++|+..+++  +++++++|+.+.... .+||+|++||||+.
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANAL--KAQALHSDVDEALTEEARFDIIVTNPPFHV  310 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEcchhhccccCCCeEEEEECCchhh
Confidence            577999999999999999999988999999999999999999999998  489999999988644 78999999999986


Q ss_pred             C
Q psy15742        268 P  268 (342)
Q Consensus       268 ~  268 (342)
                      .
T Consensus       311 ~  311 (381)
T 3dmg_A          311 G  311 (381)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.48  E-value=5.6e-14  Score=121.88  Aligned_cols=144  Identities=11%  Similarity=0.090  Sum_probs=95.2

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcC-----------CCCcEEEEEccccccCCC--C
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYG-----------VSHKIQFIQGDFFALAPS--L  254 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~g-----------l~~~i~~~~~D~~~~~~~--~  254 (342)
                      +++.+|||+|||+|..+..+++.|.+|+|+|+|+.|++.|+++.....           ...+++++++|+.+++..  +
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~  100 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG  100 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence            568899999999999999999999999999999999999998865310           024799999999988643  5


Q ss_pred             CccEEEEcCCCCCCcccc---ccccccccCcCCCCch-hhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEeccc
Q psy15742        255 QGDVVFLSPPWGGPEYAR---SSFSIDNIFPEQGGGR-RLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGR  330 (342)
Q Consensus       255 ~~D~Ii~nPP~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~~  330 (342)
                      +||+|++.-.++......   ....+.+++++  ||. .+......  .....--|-.....++..++..++++..+...
T Consensus       101 ~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp--gG~~~l~~~~~~--~~~~~~~~~~~~~~el~~~~~~gf~i~~~~~~  176 (203)
T 1pjz_A          101 HCAAFYDRAAMIALPADMRERYVQHLEALMPQ--ACSGLLITLEYD--QALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQ  176 (203)
T ss_dssp             SEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS--EEEEEEEEESSC--SSSSSSCCCCCCHHHHHHTSCSSEEEEEEEES
T ss_pred             CEEEEEECcchhhCCHHHHHHHHHHHHHHcCC--CcEEEEEEEecC--ccccCCCCCCCCHHHHHHHhcCCcEEEEeccc
Confidence            899999876655432111   11233444544  442 11111100  00000001224567788877668999888877


Q ss_pred             CCCCC
Q psy15742        331 QMFSP  335 (342)
Q Consensus       331 ~~fp~  335 (342)
                      +....
T Consensus       177 ~~~~~  181 (203)
T 1pjz_A          177 DTLHS  181 (203)
T ss_dssp             SCTTT
T ss_pred             cchhc
Confidence            76543

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.46  E-value=3.6e-13  Score=113.39  Aligned_cols=136  Identities=16%  Similarity=0.106  Sum_probs=89.6

Q ss_pred             HHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCcc
Q psy15742        178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD  257 (342)
Q Consensus       178 ~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D  257 (342)
                      .+++.+.....++.+|||+|||+|.++..+++.+ +|+|+|+|+.+++.          .++++++++|+.+..+..+||
T Consensus        12 ~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~~~~fD   80 (170)
T 3q87_B           12 TLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES----------HRGGNLVRADLLCSINQESVD   80 (170)
T ss_dssp             HHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT----------CSSSCEEECSTTTTBCGGGCS
T ss_pred             HHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc----------ccCCeEEECChhhhcccCCCC
Confidence            3444433322456799999999999999999989 99999999999987          247899999998866667999


Q ss_pred             EEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec--CCCCCHHHHHHhh-CCCcEEEEecccC
Q psy15742        258 VVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL--PRTSDVFEIFHDS-GKKGSFISLTGRQ  331 (342)
Q Consensus       258 ~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~l~~~~-~~~~~i~~i~~~~  331 (342)
                      +|++||||........      +....++...+..+.+.+ +++.+++  +......++...+ ..++++..+....
T Consensus        81 ~i~~n~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~  150 (170)
T 3q87_B           81 VVVFNPPYVPDTDDPI------IGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRK  150 (170)
T ss_dssp             EEEECCCCBTTCCCTT------TBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             EEEECCCCccCCcccc------ccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeec
Confidence            9999999987543211      110000122333444444 5555544  3444455555443 3567776655443

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.45  E-value=1.1e-13  Score=141.10  Aligned_cols=81  Identities=25%  Similarity=0.382  Sum_probs=70.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC--------------------------------------------CEEEEEeCCHHH
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC--------------------------------------------QKVISIDIDPAK  223 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~--------------------------------------------~~v~gvD~s~~~  223 (342)
                      +++..|+|++||||++++++|..+                                            ..++|+|+|+.+
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            357799999999999999998752                                            479999999999


Q ss_pred             HHHHHHHHHHcCCCCcEEEEEccccccCCC---CCccEEEEcCCCCCC
Q psy15742        224 LRLAQHNASVYGVSHKIQFIQGDFFALAPS---LQGDVVFLSPPWGGP  268 (342)
Q Consensus       224 l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~---~~~D~Ii~nPP~~~~  268 (342)
                      ++.|+.|+..+|+.+.++|.++|+.++.+.   +.||+|++||||+..
T Consensus       269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~R  316 (703)
T 3v97_A          269 IQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGER  316 (703)
T ss_dssp             HHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC-
T ss_pred             HHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCcccc
Confidence            999999999999977799999999987432   279999999999854

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.45  E-value=2.7e-14  Score=123.77  Aligned_cols=89  Identities=18%  Similarity=0.222  Sum_probs=56.7

Q ss_pred             HHHHHHHhc---CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC
Q psy15742        179 VAQHIASRC---KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS  253 (342)
Q Consensus       179 ~~~~i~~~~---~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~  253 (342)
                      +++.+...+   .++.+|||+|||+|.++..+++.  +.+++|+|+|+.+++.|++|+..++.  +++++++|+.+..+.
T Consensus        17 ~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~   94 (215)
T 4dzr_A           17 LVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWLIE   94 (215)
T ss_dssp             HHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhhhh
Confidence            334444443   56789999999999999999998  56999999999999999999998887  799999999885544


Q ss_pred             -----CCccEEEEcCCCCCCc
Q psy15742        254 -----LQGDVVFLSPPWGGPE  269 (342)
Q Consensus       254 -----~~~D~Ii~nPP~~~~~  269 (342)
                           ++||+|++||||....
T Consensus        95 ~~~~~~~fD~i~~npp~~~~~  115 (215)
T 4dzr_A           95 RAERGRPWHAIVSNPPYIPTG  115 (215)
T ss_dssp             HHHTTCCBSEEEECCCCCC--
T ss_pred             hhhccCcccEEEECCCCCCCc
Confidence                 7899999999998654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.44  E-value=6.5e-13  Score=119.77  Aligned_cols=93  Identities=22%  Similarity=0.264  Sum_probs=76.4

Q ss_pred             CCCCCHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy15742        171 WYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD  246 (342)
Q Consensus       171 ~~~~~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D  246 (342)
                      +|....+.+...+...+++|.+|||+|||+|..++.+++.    +.+|+|+|+|+.|++.|++++...+...+++++++|
T Consensus        52 ~Y~~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D  131 (261)
T 4gek_A           52 GYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGD  131 (261)
T ss_dssp             THHHHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecc
Confidence            3333333444445556889999999999999999999985    569999999999999999999998887799999999


Q ss_pred             ccccCCCCCccEEEEcCC
Q psy15742        247 FFALAPSLQGDVVFLSPP  264 (342)
Q Consensus       247 ~~~~~~~~~~D~Ii~nPP  264 (342)
                      +.+++. ..||+|+++--
T Consensus       132 ~~~~~~-~~~d~v~~~~~  148 (261)
T 4gek_A          132 IRDIAI-ENASMVVLNFT  148 (261)
T ss_dssp             TTTCCC-CSEEEEEEESC
T ss_pred             cccccc-cccccceeeee
Confidence            998754 46999999644

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.43  E-value=3.4e-13  Score=126.45  Aligned_cols=77  Identities=21%  Similarity=0.194  Sum_probs=69.0

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-------QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  261 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-------~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~  261 (342)
                      ++.+|||+|||+|.+++.+++..       .+++|+|+|+.+++.|+.|+..+|+  ++.++++|++......+||+|++
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~~~~~fD~Ii~  207 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANLLVDPVDVVIS  207 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCccccCCccEEEE
Confidence            46799999999999999998762       7899999999999999999999988  68999999988665678999999


Q ss_pred             cCCCCC
Q psy15742        262 SPPWGG  267 (342)
Q Consensus       262 nPP~~~  267 (342)
                      ||||+.
T Consensus       208 NPPfg~  213 (344)
T 2f8l_A          208 DLPVGY  213 (344)
T ss_dssp             ECCCSE
T ss_pred             CCCCCC
Confidence            999864

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.43  E-value=2.5e-13  Score=121.41  Aligned_cols=81  Identities=27%  Similarity=0.462  Sum_probs=68.1

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHc---CCCCc----------------------
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVY---GVSHK----------------------  239 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~---gl~~~----------------------  239 (342)
                      ++.+|||+|||+|.+++.+++.    +.+|+|+|+|+.+++.|+.|+..+   ++.++                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            4679999999999999999876    578999999999999999999876   55322                      


Q ss_pred             ---EE-------------EEEccccccC------CCCCccEEEEcCCCCCCc
Q psy15742        240 ---IQ-------------FIQGDFFALA------PSLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       240 ---i~-------------~~~~D~~~~~------~~~~~D~Ii~nPP~~~~~  269 (342)
                         ++             ++++|+.+..      ...+||+|++||||....
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~  182 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERT  182 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSS
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccc
Confidence               66             9999998865      334899999999998653

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.42  E-value=1.6e-12  Score=110.47  Aligned_cols=79  Identities=20%  Similarity=0.368  Sum_probs=72.1

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~-~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++..+++.+ +++++++|+.+..+..+||+|++||||+.
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  131 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRA  131 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCSTT
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceEEEECCCccc
Confidence            57899999999999999999888999999999999999999999998853 49999999988766678999999999875

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.42  E-value=7.8e-14  Score=125.54  Aligned_cols=81  Identities=22%  Similarity=0.332  Sum_probs=70.0

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCH-------HHHHHHHHHHHHcCCCCcEEEEEccccccCC---C--CC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP-------AKLRLAQHNASVYGVSHKIQFIQGDFFALAP---S--LQ  255 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~-------~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~---~--~~  255 (342)
                      .++.+|||+|||+|.+++.+|+.+.+|+|+|+|+       .+++.|++|++.+++.++++++++|+.++.+   +  .+
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~  161 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGK  161 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCC
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCC
Confidence            3467999999999999999999988999999999       9999999999988876569999999988642   2  58


Q ss_pred             ccEEEEcCCCCCC
Q psy15742        256 GDVVFLSPPWGGP  268 (342)
Q Consensus       256 ~D~Ii~nPP~~~~  268 (342)
                      ||+|++||||...
T Consensus       162 fD~V~~dP~~~~~  174 (258)
T 2r6z_A          162 PDIVYLDPMYPER  174 (258)
T ss_dssp             CSEEEECCCC---
T ss_pred             ccEEEECCCCCCc
Confidence            9999999999764

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.42  E-value=8.8e-13  Score=113.17  Aligned_cols=81  Identities=17%  Similarity=0.302  Sum_probs=72.1

Q ss_pred             HhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEE
Q psy15742        185 SRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVV  259 (342)
Q Consensus       185 ~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~I  259 (342)
                      ..++++.+|||+|||+|.++..+++.   ..+|+|+|+|+.+++.|++|++.+|+.++++++++|+.++.  ...+||+|
T Consensus        18 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v   97 (197)
T 3eey_A           18 MFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAV   97 (197)
T ss_dssp             HHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred             hcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEE
Confidence            34567889999999999999999986   36999999999999999999999998678999999988774  34689999


Q ss_pred             EEcCCC
Q psy15742        260 FLSPPW  265 (342)
Q Consensus       260 i~nPP~  265 (342)
                      ++||||
T Consensus        98 ~~~~~~  103 (197)
T 3eey_A           98 MFNLGY  103 (197)
T ss_dssp             EEEESB
T ss_pred             EEcCCc
Confidence            999998

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.42  E-value=4.4e-13  Score=123.13  Aligned_cols=79  Identities=10%  Similarity=0.055  Sum_probs=72.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      +++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...|++++++++++|+.++  +++||+|+++..++
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~fD~v~~~~~~~  148 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPVDRIVSLGAFE  148 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCCSEEEEESCGG
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--CCCccEEEEcchHH
Confidence            56889999999999999999998 8999999999999999999999999977899999999987  67899999987765


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       149 ~~  150 (302)
T 3hem_A          149 HF  150 (302)
T ss_dssp             GT
T ss_pred             hc
Confidence            54

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.41  E-value=1.3e-12  Score=112.96  Aligned_cols=79  Identities=14%  Similarity=0.174  Sum_probs=70.4

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nP  263 (342)
                      .+++.+|||+|||+|.+++.+++.+  .+|+|+|+|+.+++.|++|++.+++ ++++++++|+.+..+ ...||+|++++
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~D~i~~~~  116 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDLPDPDRVFIGG  116 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTSCCCSEEEESC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcCCCCCEEEECC
Confidence            3468899999999999999999985  8999999999999999999999998 589999999977653 36899999998


Q ss_pred             CCC
Q psy15742        264 PWG  266 (342)
Q Consensus       264 P~~  266 (342)
                      ++.
T Consensus       117 ~~~  119 (204)
T 3e05_A          117 SGG  119 (204)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            865

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.40  E-value=7.8e-13  Score=116.14  Aligned_cols=130  Identities=15%  Similarity=0.049  Sum_probs=93.5

Q ss_pred             HHHHHhcCCCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC-Ccc
Q psy15742        181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-QGD  257 (342)
Q Consensus       181 ~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~-~~D  257 (342)
                      +.+.+.+++|.+|+|+|||+|.+++.+|+.+  .+|+|+|+|+.+++.|++|++.+|+.++++++++|.++..+.. +||
T Consensus         7 ~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D   86 (225)
T 3kr9_A            7 ELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVS   86 (225)
T ss_dssp             HHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCC
T ss_pred             HHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCC
Confidence            4556667888999999999999999999974  5899999999999999999999999878999999998766544 699


Q ss_pred             EEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhh-CCCcEEEEe
Q psy15742        258 VVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDS-GKKGSFISL  327 (342)
Q Consensus       258 ~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~i~~i  327 (342)
                      +|++.    +..    ..-+.++         +-.....+.+...+++.++.....+...+ ..||.+...
T Consensus        87 ~Ivia----G~G----g~~i~~I---------l~~~~~~L~~~~~lVlq~~~~~~~vr~~L~~~Gf~i~~e  140 (225)
T 3kr9_A           87 VITIA----GMG----GRLIARI---------LEEGLGKLANVERLILQPNNREDDLRIWLQDHGFQIVAE  140 (225)
T ss_dssp             EEEEE----EEC----HHHHHHH---------HHHTGGGCTTCCEEEEEESSCHHHHHHHHHHTTEEEEEE
T ss_pred             EEEEc----CCC----hHHHHHH---------HHHHHHHhCCCCEEEEECCCCHHHHHHHHHHCCCEEEEE
Confidence            98862    110    0001111         22233445566666666666666665433 455666544

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.40  E-value=1.2e-12  Score=117.34  Aligned_cols=143  Identities=15%  Similarity=0.058  Sum_probs=95.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH----------cC------CCCcEEEEEccccccC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASV----------YG------VSHKIQFIQGDFFALA  251 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~----------~g------l~~~i~~~~~D~~~~~  251 (342)
                      .++.+|||+|||+|..+..+|+.|.+|+|||+|+.|++.|+++...          .+      ...+++++++|+.+++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~  146 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP  146 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence            3578999999999999999999999999999999999999876532          00      1247999999999987


Q ss_pred             CC--CCccEEEEcCCCCCCcccc---ccccccccCcCCCCchhh-hHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEE
Q psy15742        252 PS--LQGDVVFLSPPWGGPEYAR---SSFSIDNIFPEQGGGRRL-FQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFI  325 (342)
Q Consensus       252 ~~--~~~D~Ii~nPP~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~  325 (342)
                      ..  ++||+|++.-.+.......   ....+.+++++  ||..+ .........  .---|-.....++..++..++++.
T Consensus       147 ~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp--GG~l~l~~~~~~~~~--~~g~~~~~~~~el~~~l~~~f~v~  222 (252)
T 2gb4_A          147 RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK--EFQYLVAVLSYDPTK--HAGPPFYVPSAELKRLFGTKCSMQ  222 (252)
T ss_dssp             GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE--EEEEEEEEEECCTTS--CCCSSCCCCHHHHHHHHTTTEEEE
T ss_pred             cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC--CeEEEEEEEecCCcc--CCCCCCCCCHHHHHHHhhCCeEEE
Confidence            43  6899999877666543211   11223344444  34332 211110000  000112356778888887789998


Q ss_pred             EecccCCCC
Q psy15742        326 SLTGRQMFS  334 (342)
Q Consensus       326 ~i~~~~~fp  334 (342)
                      .+...+.|.
T Consensus       223 ~~~~~~~~~  231 (252)
T 2gb4_A          223 CLEEVDALE  231 (252)
T ss_dssp             EEEEEECCC
T ss_pred             EEeccccch
Confidence            887766654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.40  E-value=7.9e-13  Score=117.27  Aligned_cols=81  Identities=14%  Similarity=0.085  Sum_probs=71.9

Q ss_pred             HHHHHhcCCCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC-Ccc
Q psy15742        181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-QGD  257 (342)
Q Consensus       181 ~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~-~~D  257 (342)
                      +.+.+.++++.+|+|+|||+|.+++.+++.+  .+|+|+|+|+.+++.|++|++.+|+.++++++++|.++..... +||
T Consensus        13 ~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D   92 (244)
T 3gnl_A           13 EKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAID   92 (244)
T ss_dssp             HHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCC
T ss_pred             HHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCcccccc
Confidence            4455667788999999999999999999974  4799999999999999999999999878999999999887654 599


Q ss_pred             EEEE
Q psy15742        258 VVFL  261 (342)
Q Consensus       258 ~Ii~  261 (342)
                      +|++
T Consensus        93 ~Ivi   96 (244)
T 3gnl_A           93 TIVI   96 (244)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9887

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.40  E-value=9.3e-13  Score=115.87  Aligned_cols=130  Identities=12%  Similarity=0.029  Sum_probs=93.4

Q ss_pred             HHHHHhcCCCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC-Ccc
Q psy15742        181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-QGD  257 (342)
Q Consensus       181 ~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~-~~D  257 (342)
                      +.+.+.+++|.+|+|+|||+|.+++.+++.+  .+|+|+|+|+.+++.|++|++.+|+.++++++++|.++..... +||
T Consensus        13 ~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D   92 (230)
T 3lec_A           13 QKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNID   92 (230)
T ss_dssp             HHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCC
T ss_pred             HHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccC
Confidence            3455667788999999999999999999974  5799999999999999999999999888999999999887554 699


Q ss_pred             EEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhh-CCCcEEEEe
Q psy15742        258 VVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDS-GKKGSFISL  327 (342)
Q Consensus       258 ~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~i~~i  327 (342)
                      +|++-    +..    ..-+.++++         +....+.+...+.+.++.....+...+ ..||.+...
T Consensus        93 ~Ivia----GmG----g~lI~~IL~---------~~~~~l~~~~~lIlqp~~~~~~lr~~L~~~Gf~i~~E  146 (230)
T 3lec_A           93 TITIC----GMG----GRLIADILN---------NDIDKLQHVKTLVLQPNNREDDLRKWLAANDFEIVAE  146 (230)
T ss_dssp             EEEEE----EEC----HHHHHHHHH---------HTGGGGTTCCEEEEEESSCHHHHHHHHHHTTEEEEEE
T ss_pred             EEEEe----CCc----hHHHHHHHH---------HHHHHhCcCCEEEEECCCChHHHHHHHHHCCCEEEEE
Confidence            98861    110    011111221         122344556667776677777666533 345555543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.39  E-value=2.5e-12  Score=111.46  Aligned_cols=134  Identities=13%  Similarity=0.060  Sum_probs=96.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      +++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++|+..++++ +++++.+|+.+.. +..+||+|+++.+..
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~D~i~~~~~~~  154 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQARAPFDAIIVTAAPP  154 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEEEESSBCS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCccCCCccEEEEccchh
Confidence            45889999999999999999999999999999999999999999999985 7999999998865 346899999987654


Q ss_pred             CCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEecccCCCCCCCcccc
Q psy15742        267 GPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQDMET  341 (342)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~~~~fp~t~h~e~  341 (342)
                      ...     ..+.+++++  ||..++.+..  .......         + .....++....+.+..++|-+..+++
T Consensus       155 ~~~-----~~~~~~L~p--gG~lv~~~~~--~~~~~~~---------~-~~~~~~~~~~~~~~~~f~pl~~~~~~  210 (210)
T 3lbf_A          155 EIP-----TALMTQLDE--GGILVLPVGE--EHQYLKR---------V-RRRGGEFIIDTVEAVRFVPLVKGELA  210 (210)
T ss_dssp             SCC-----THHHHTEEE--EEEEEEEECS--SSCEEEE---------E-EEETTEEEEEEEEECCCCBCCCSSCC
T ss_pred             hhh-----HHHHHhccc--CcEEEEEEcC--CceEEEE---------E-EEcCCeEEEEEeccEEEEEccCccCC
Confidence            431     123333433  3333332221  1111111         1 11245678888899999999887653

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.38  E-value=3.6e-12  Score=110.58  Aligned_cols=77  Identities=19%  Similarity=0.312  Sum_probs=69.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  264 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP  264 (342)
                      .++.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.|++|++.+|++++++++++|+.+.. ....||+|++++.
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~  131 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGG  131 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCc
Confidence            4578999999999999999999999999999999999999999999999668999999999854 3457999999874

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.38  E-value=1.3e-12  Score=112.54  Aligned_cols=74  Identities=24%  Similarity=0.351  Sum_probs=63.1

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++|+.      +++++++|+.+++  .+||+|++||||+
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~--~~~D~v~~~~p~~  121 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS--GKYDTWIMNPPFG  121 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC--CCEEEEEECCCC-
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC--CCeeEEEECCCch
Confidence            357899999999999999999885 479999999999999999975      6899999999864  5899999999998


Q ss_pred             CCc
Q psy15742        267 GPE  269 (342)
Q Consensus       267 ~~~  269 (342)
                      ...
T Consensus       122 ~~~  124 (200)
T 1ne2_A          122 SVV  124 (200)
T ss_dssp             ---
T ss_pred             hcc
Confidence            753

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.37  E-value=1.5e-12  Score=117.29  Aligned_cols=96  Identities=18%  Similarity=0.253  Sum_probs=78.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      +++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..|++++++++++|+.+++ +.++||+|+++.++
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~  124 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAI  124 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCc
Confidence            46889999999999999999988 55999999999999999999999999778999999998876 45789999999887


Q ss_pred             CCCccccccccccccCcC
Q psy15742        266 GGPEYARSSFSIDNIFPE  283 (342)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~  283 (342)
                      ...+.......+.+++++
T Consensus       125 ~~~~~~~~l~~~~~~Lkp  142 (267)
T 3kkz_A          125 YNIGFERGLNEWRKYLKK  142 (267)
T ss_dssp             GGTCHHHHHHHHGGGEEE
T ss_pred             eecCHHHHHHHHHHHcCC
Confidence            765332223333444433

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.37  E-value=6.7e-12  Score=114.29  Aligned_cols=80  Identities=18%  Similarity=0.048  Sum_probs=61.0

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCC-EEEEEeC-CHHHHHHHHHHH-----HHcCCC----CcEEEEEcccccc----C-
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDI-DPAKLRLAQHNA-----SVYGVS----HKIQFIQGDFFAL----A-  251 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~-s~~~l~~a~~n~-----~~~gl~----~~i~~~~~D~~~~----~-  251 (342)
                      .++.+|||+|||+|.+++.+++.+. +|+|+|+ |+.+++.|++|+     +.+++.    ++++++..|+.+.    . 
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            3578999999999999999998865 9999999 899999999999     555553    4688886665432    1 


Q ss_pred             --CCCCccEEEE-cCCCCC
Q psy15742        252 --PSLQGDVVFL-SPPWGG  267 (342)
Q Consensus       252 --~~~~~D~Ii~-nPP~~~  267 (342)
                        +..+||+|++ |++|+.
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~  176 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFH  176 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCG
T ss_pred             hccCCCCCEEEEeCcccCh
Confidence              2468999987 877764

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.37  E-value=1.8e-12  Score=120.16  Aligned_cols=136  Identities=15%  Similarity=0.143  Sum_probs=96.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP  263 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nP  263 (342)
                      +++.+|||+|||+|.++..+++.+   .+|+|+|+|+.+++.|++|++.+|++ +++++.+|+.+.+ +.++||+|++++
T Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~~~~~fD~Iv~~~  152 (317)
T 1dl5_A           74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPEFSPYDVIFVTV  152 (317)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred             CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhccccCCCeEEEEEcC
Confidence            468899999999999999999874   35999999999999999999999985 5999999998854 356899999999


Q ss_pred             CCCCCccccccccccccCcCCCCchhhhHhhhcc-CCCceeecCCCCCHHHHHHhhCCCcEEEEecccCCCCCCCcccc
Q psy15742        264 PWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGI-SPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQDMET  341 (342)
Q Consensus       264 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~~~~fp~t~h~e~  341 (342)
                      ++....     ..+.+++++  ||..++.+.... ....+..         +. .....+...++.+..++|.+.|++.
T Consensus       153 ~~~~~~-----~~~~~~Lkp--gG~lvi~~~~~~~~~~~~~~---------~~-~~~~~~~~~~i~~~~~~p~~~~~~~  214 (317)
T 1dl5_A          153 GVDEVP-----ETWFTQLKE--GGRVIVPINLKLSRRQPAFL---------FK-KKDPYLVGNYKLETRFITAGGNLGN  214 (317)
T ss_dssp             BBSCCC-----HHHHHHEEE--EEEEEEEBCBGGGTBCEEEE---------EE-EETTEEEEEEEEECCCCBCCGGGSC
T ss_pred             CHHHHH-----HHHHHhcCC--CcEEEEEECCCCcccceEEE---------EE-EeCCcEEEEEeccEEEEEccCcccc
Confidence            987542     223334433  343333321110 0000110         00 1134577888999999999999874

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.37  E-value=3.6e-12  Score=116.63  Aligned_cols=78  Identities=26%  Similarity=0.255  Sum_probs=68.9

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++..  . ++++++++|+.+.. +...||.|++|+||.
T Consensus        49 ~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~--~-~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~  125 (295)
T 3gru_A           49 TKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL--Y-NNIEIIWGDALKVDLNKLDFNKVVANLPYQ  125 (295)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH--C-SSEEEEESCTTTSCGGGSCCSEEEEECCGG
T ss_pred             CCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc--C-CCeEEEECchhhCCcccCCccEEEEeCccc
Confidence            4678999999999999999999999999999999999999999873  2 48999999999865 344799999999997


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       126 is  127 (295)
T 3gru_A          126 IS  127 (295)
T ss_dssp             GH
T ss_pred             cc
Confidence            54

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.37  E-value=2.1e-12  Score=115.31  Aligned_cols=82  Identities=20%  Similarity=0.270  Sum_probs=73.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      +++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++..+|++++++++++|+.+++ +.++||+|+++..+
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  124 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI  124 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCS
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChH
Confidence            467899999999999999999984 4999999999999999999999999777999999998876 45789999999887


Q ss_pred             CCCc
Q psy15742        266 GGPE  269 (342)
Q Consensus       266 ~~~~  269 (342)
                      +..+
T Consensus       125 ~~~~  128 (257)
T 3f4k_A          125 YNIG  128 (257)
T ss_dssp             CCCC
T ss_pred             hhcC
Confidence            7664

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.37  E-value=2.3e-12  Score=114.98  Aligned_cols=79  Identities=22%  Similarity=0.175  Sum_probs=70.9

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      +++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..|+.++++++++|+.+.+.+++||+|++....+
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~V~~~~~~~  114 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATW  114 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCCCCEEEECCChH
Confidence            46889999999999999999987 78999999999999999999999998778999999999876667899999865543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.36  E-value=1.8e-12  Score=111.54  Aligned_cols=142  Identities=13%  Similarity=0.011  Sum_probs=93.8

Q ss_pred             HHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742        184 ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  262 (342)
Q Consensus       184 ~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n  262 (342)
                      ...++++ +|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...+.  +++++++|+.+.+ +.++||+|+++
T Consensus        25 ~~~~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~  101 (202)
T 2kw5_A           25 ANQIPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSI  101 (202)
T ss_dssp             HHHSCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEEEE
T ss_pred             HHhCCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEEEE
Confidence            3345567 999999999999999999888999999999999999999988887  7999999998876 45689999996


Q ss_pred             CCCCCCcc-ccccccccccCcCCCCchhhhHhhhccCC----CceeecCCCCCHHHHHHhhCCCcEEEEecccC
Q psy15742        263 PPWGGPEY-ARSSFSIDNIFPEQGGGRRLFQVARGISP----NVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQ  331 (342)
Q Consensus       263 PP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~~~  331 (342)
                      ........ ......+.+++++  ||..++........    .............++..++. |++++.+....
T Consensus       102 ~~~~~~~~~~~~l~~~~~~L~p--gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-Gf~v~~~~~~~  172 (202)
T 2kw5_A          102 FCHLPSSLRQQLYPKVYQGLKP--GGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP-SLNWLIANNLE  172 (202)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCS--SEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS-SSCEEEEEEEE
T ss_pred             hhcCCHHHHHHHHHHHHHhcCC--CcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc-CceEEEEEEEE
Confidence            43221110 1122233344444  44433322111000    00000012346777888877 88887765443

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.36  E-value=6.2e-12  Score=110.95  Aligned_cols=79  Identities=19%  Similarity=0.243  Sum_probs=70.8

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~  268 (342)
                      +.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...+...+++++++|+.+..+..+||+|+++..+...
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~  145 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAI  145 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTS
T ss_pred             CCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcC
Confidence            4599999999999999999888999999999999999999998766556899999999998777799999998777655

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.35  E-value=6.2e-12  Score=108.60  Aligned_cols=84  Identities=19%  Similarity=0.144  Sum_probs=72.6

Q ss_pred             HHHHHhcCCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEE
Q psy15742        181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVV  259 (342)
Q Consensus       181 ~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~I  259 (342)
                      +.+...++++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++|+..+++. +++++++|+.+..+ .+||+|
T Consensus        52 ~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~-~~fD~i  129 (205)
T 3grz_A           52 LGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY-DIALQKTSLLADVD-GKFDLI  129 (205)
T ss_dssp             HHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-CCEEEESSTTTTCC-SCEEEE
T ss_pred             HHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeccccccCC-CCceEE
Confidence            3444456678899999999999999999874 49999999999999999999999985 49999999988654 689999


Q ss_pred             EEcCCCC
Q psy15742        260 FLSPPWG  266 (342)
Q Consensus       260 i~nPP~~  266 (342)
                      ++++|+.
T Consensus       130 ~~~~~~~  136 (205)
T 3grz_A          130 VANILAE  136 (205)
T ss_dssp             EEESCHH
T ss_pred             EECCcHH
Confidence            9999864

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.35  E-value=1.3e-11  Score=112.18  Aligned_cols=79  Identities=16%  Similarity=0.104  Sum_probs=72.7

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~  268 (342)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++..+++  +++++++|+.+....++||+|+++++++..
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~i~~~~~~~~~  197 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDFIVSTVVFMFL  197 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCCSCEEEEEECSSGGGS
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccccCCccEEEEccchhhC
Confidence            577999999999999999999988999999999999999999999988  899999999987767789999999988755


Q ss_pred             c
Q psy15742        269 E  269 (342)
Q Consensus       269 ~  269 (342)
                      +
T Consensus       198 ~  198 (286)
T 3m70_A          198 N  198 (286)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.35  E-value=1.7e-12  Score=116.08  Aligned_cols=78  Identities=22%  Similarity=0.295  Sum_probs=72.1

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      ..++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++|++.+|++++++++++|+.+..+..+||+|++||
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~  170 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDL  170 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEEECS
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEEECC
Confidence            356889999999999999999988   78999999999999999999999999767999999999877777899999999


Q ss_pred             C
Q psy15742        264 P  264 (342)
Q Consensus       264 P  264 (342)
                      |
T Consensus       171 ~  171 (255)
T 3mb5_A          171 P  171 (255)
T ss_dssp             S
T ss_pred             C
Confidence            8

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.34  E-value=4.7e-12  Score=106.65  Aligned_cols=76  Identities=26%  Similarity=0.458  Sum_probs=69.5

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  264 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP  264 (342)
                      .++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++|+..+++ ++++++++|+.+..+..+||+|++++|
T Consensus        34 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~D~i~~~~~  109 (183)
T 2yxd_A           34 NKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDVLDKLEFNKAFIGGT  109 (183)
T ss_dssp             CTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHHGGGCCCSEEEECSC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccccccCCCCcEEEECCc
Confidence            3578999999999999999999888999999999999999999999998 479999999988555568999999998

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.34  E-value=8.4e-12  Score=104.89  Aligned_cols=79  Identities=20%  Similarity=0.202  Sum_probs=68.6

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEEEcC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSP  263 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii~nP  263 (342)
                      .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.|++|+..+++++++ ++++|+.+..+.  .+||+|+++.
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~  102 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGG  102 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECC
Confidence            45789999999999999999987  789999999999999999999999986688 889998665443  6899999998


Q ss_pred             CCCC
Q psy15742        264 PWGG  267 (342)
Q Consensus       264 P~~~  267 (342)
                      +.+.
T Consensus       103 ~~~~  106 (178)
T 3hm2_A          103 GLTA  106 (178)
T ss_dssp             -TTC
T ss_pred             cccH
Confidence            8654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.34  E-value=7.6e-12  Score=111.09  Aligned_cols=77  Identities=17%  Similarity=0.211  Sum_probs=71.0

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  264 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP  264 (342)
                      .++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.|++|...+++.++++++.+|+.+.. +...||+|++|||
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  167 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVR  167 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECSS
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECCc
Confidence            4688999999999999999998888999999999999999999999998678999999999876 5668999999988

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.34  E-value=3.5e-12  Score=116.43  Aligned_cols=80  Identities=21%  Similarity=0.299  Sum_probs=71.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++..++..++++++++|+.+.... .||+|++|+||..
T Consensus        27 ~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~-~fD~vv~nlpy~~  105 (285)
T 1zq9_A           27 RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTCVANLPYQI  105 (285)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-CCSEEEEECCGGG
T ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch-hhcEEEEecCccc
Confidence            457899999999999999999998999999999999999999998777656899999999886433 7999999999976


Q ss_pred             C
Q psy15742        268 P  268 (342)
Q Consensus       268 ~  268 (342)
                      .
T Consensus       106 ~  106 (285)
T 1zq9_A          106 S  106 (285)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.34  E-value=2.7e-12  Score=124.44  Aligned_cols=95  Identities=24%  Similarity=0.386  Sum_probs=80.6

Q ss_pred             CHHHHHHHHHHhcC--CCCeEEeccCCCcHHHHHHHHh---------------CCEEEEEeCCHHHHHHHHHHHHHcCCC
Q psy15742        175 TPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV---------------CQKVISIDIDPAKLRLAQHNASVYGVS  237 (342)
Q Consensus       175 ~~e~~~~~i~~~~~--~~~~vLDlgcGtG~~~~~~a~~---------------~~~v~gvD~s~~~l~~a~~n~~~~gl~  237 (342)
                      ||..+++.+.+.+.  ++.+|+|+|||||++++.+++.               ..+++|+|+++.+++.|+.|+..+|+.
T Consensus       155 TP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~  234 (445)
T 2okc_A          155 TPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  234 (445)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            67777777777654  4679999999999999998864               367999999999999999999999984


Q ss_pred             C-cEEEEEccccccCCCCCccEEEEcCCCCCCc
Q psy15742        238 H-KIQFIQGDFFALAPSLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       238 ~-~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~~  269 (342)
                      . ++.++++|.+......+||+|++||||++..
T Consensus       235 ~~~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~  267 (445)
T 2okc_A          235 TDRSPIVCEDSLEKEPSTLVDVILANPPFGTRP  267 (445)
T ss_dssp             SSCCSEEECCTTTSCCSSCEEEEEECCCSSCCC
T ss_pred             cCCCCEeeCCCCCCcccCCcCEEEECCCCCCcc
Confidence            3 6789999998876556899999999999864

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.33  E-value=2.5e-12  Score=115.46  Aligned_cols=88  Identities=26%  Similarity=0.272  Sum_probs=76.3

Q ss_pred             HHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCc
Q psy15742        177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQG  256 (342)
Q Consensus       177 e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~  256 (342)
                      ..+++.+...++++.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.|++|+..+++.  ++++++|+.+..+..+|
T Consensus       108 ~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~~~~f  185 (254)
T 2nxc_A          108 RLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPFGPF  185 (254)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGGCCE
T ss_pred             HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCcCCCC
Confidence            4555666666778899999999999999999998779999999999999999999999984  89999999875545689


Q ss_pred             cEEEEcCCCC
Q psy15742        257 DVVFLSPPWG  266 (342)
Q Consensus       257 D~Ii~nPP~~  266 (342)
                      |+|++|++.+
T Consensus       186 D~Vv~n~~~~  195 (254)
T 2nxc_A          186 DLLVANLYAE  195 (254)
T ss_dssp             EEEEEECCHH
T ss_pred             CEEEECCcHH
Confidence            9999998743

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.33  E-value=3.5e-12  Score=117.85  Aligned_cols=79  Identities=13%  Similarity=0.097  Sum_probs=70.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      +++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...|+.++++++++|+.+++  ++||+|+++..+.
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~fD~v~~~~~l~  166 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAFE  166 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCCSEEEEESCGG
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--CCcCEEEEeChHH
Confidence            46789999999999999999987 88999999999999999999999998778999999998874  6899999987665


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       167 ~~  168 (318)
T 2fk8_A          167 HF  168 (318)
T ss_dssp             GT
T ss_pred             hc
Confidence            44

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.33  E-value=2.2e-12  Score=117.33  Aligned_cols=79  Identities=9%  Similarity=0.086  Sum_probs=69.9

Q ss_pred             CCCCeEEeccCCCcHHHHHHHH-hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAA-VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~-~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      +++.+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.|++++...++.++++++.+|+.+++  ++||+|++.-.+.
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~fD~v~~~~~l~  140 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFE  140 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCSEEEEESCGG
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CCeeEEEEeCchh
Confidence            4678999999999999999995 488999999999999999999998888778999999998775  7899999986655


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       141 ~~  142 (287)
T 1kpg_A          141 HF  142 (287)
T ss_dssp             GT
T ss_pred             hc
Confidence            43

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.32  E-value=5.6e-12  Score=116.75  Aligned_cols=84  Identities=23%  Similarity=0.335  Sum_probs=73.7

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLS  262 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~n  262 (342)
                      .+++.+|||+|||+|..+..+++.   +.+|+|+|+|+.+++.+++|++.+|+. +++++++|+.++.. ...||+|++|
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Il~d  194 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDKILLD  194 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhcccccccCCEEEEe
Confidence            456889999999999999999975   378999999999999999999999985 79999999988753 4589999999


Q ss_pred             CCCCCCccc
Q psy15742        263 PPWGGPEYA  271 (342)
Q Consensus       263 PP~~~~~~~  271 (342)
                      ||+.+....
T Consensus       195 ~Pcsg~g~~  203 (315)
T 1ixk_A          195 APCTGSGTI  203 (315)
T ss_dssp             CCTTSTTTC
T ss_pred             CCCCCcccc
Confidence            999876543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.32  E-value=4.6e-12  Score=111.85  Aligned_cols=143  Identities=11%  Similarity=0.044  Sum_probs=92.0

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVF  260 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii  260 (342)
                      +++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.+.++++.+   .+++++++|+.+..    ...+||+|+
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D~V~  152 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVDVIF  152 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEEEEE
Confidence            45789999999999999999987   379999999999999998888876   37999999998732    346899999


Q ss_pred             EcCCCCCCccccc-cccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEecccCCCCCCCcc
Q psy15742        261 LSPPWGGPEYARS-SFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQDM  339 (342)
Q Consensus       261 ~nPP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~~~~fp~t~h~  339 (342)
                      +|+|  ..+.... ...+..++++  ||..++.+.........-  +...-..++..+...||++..+...+.||.+.++
T Consensus       153 ~~~~--~~~~~~~~~~~~~~~Lkp--gG~l~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~  226 (233)
T 2ipx_A          153 ADVA--QPDQTRIVALNAHTFLRN--GGHFVISIKANCIDSTAS--AEAVFASEVKKMQQENMKPQEQLTLEPYERDHAV  226 (233)
T ss_dssp             ECCC--CTTHHHHHHHHHHHHEEE--EEEEEEEEEHHHHCSSSC--HHHHHHHHHHTTGGGTEEEEEEEECTTTSSSEEE
T ss_pred             EcCC--CccHHHHHHHHHHHHcCC--CeEEEEEEcccccccCCC--HHHHHHHHHHHHHHCCCceEEEEecCCccCCcEE
Confidence            9999  1111110 1123334433  343333322110000000  0000011233334568999998899999988653

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.32  E-value=1.6e-12  Score=122.92  Aligned_cols=94  Identities=19%  Similarity=0.243  Sum_probs=72.5

Q ss_pred             CHHHHHHHHHHh--cCCCCeEEeccCCCcHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHH-------HHcCCC-CcEEE
Q psy15742        175 TPEKVAQHIASR--CKASDVVIDGFCGCGGNTIQFAAV-CQ-KVISIDIDPAKLRLAQHNA-------SVYGVS-HKIQF  242 (342)
Q Consensus       175 ~~e~~~~~i~~~--~~~~~~vLDlgcGtG~~~~~~a~~-~~-~v~gvD~s~~~l~~a~~n~-------~~~gl~-~~i~~  242 (342)
                      ++...+..+...  +.++.+|||+|||+|.+++.+|.. +. +|+|||+|+.+++.|+.|+       +.+|+. ++++|
T Consensus       157 t~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVef  236 (438)
T 3uwp_A          157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  236 (438)
T ss_dssp             THHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence            333444444443  457899999999999999999975 44 6999999999999999875       345662 58999


Q ss_pred             EEccccccCCC---CCccEEEEcCCCCCC
Q psy15742        243 IQGDFFALAPS---LQGDVVFLSPPWGGP  268 (342)
Q Consensus       243 ~~~D~~~~~~~---~~~D~Ii~nPP~~~~  268 (342)
                      +++|+.+.+..   ..||+|++|+++...
T Consensus       237 i~GD~~~lp~~d~~~~aDVVf~Nn~~F~p  265 (438)
T 3uwp_A          237 ERGDFLSEEWRERIANTSVIFVNNFAFGP  265 (438)
T ss_dssp             EECCTTSHHHHHHHHTCSEEEECCTTCCH
T ss_pred             EECcccCCccccccCCccEEEEcccccCc
Confidence            99999887521   379999999997543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.32  E-value=2.9e-12  Score=116.26  Aligned_cols=82  Identities=20%  Similarity=0.342  Sum_probs=71.0

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----CCCccE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--C-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----SLQGDV  258 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----~~~~D~  258 (342)
                      .+++.+|||+|||+|+.+..++..  + .+|+|+|+|+.+++.+++|++.+|+. +++++++|+.++..     ...||+
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~  159 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFDK  159 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCCE
Confidence            356889999999999999999984  3 79999999999999999999999985 89999999987653     568999


Q ss_pred             EEEcCCCCCCc
Q psy15742        259 VFLSPPWGGPE  269 (342)
Q Consensus       259 Ii~nPP~~~~~  269 (342)
                      |++||||.+..
T Consensus       160 Vl~d~Pcs~~g  170 (274)
T 3ajd_A          160 ILLDAPCSGNI  170 (274)
T ss_dssp             EEEEECCC---
T ss_pred             EEEcCCCCCCc
Confidence            99999998754

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.32  E-value=4.5e-12  Score=125.26  Aligned_cols=94  Identities=18%  Similarity=0.241  Sum_probs=78.6

Q ss_pred             CHHHHHHHHHHhcC------CCCeEEeccCCCcHHHHHHHHh-----CCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEE
Q psy15742        175 TPEKVAQHIASRCK------ASDVVIDGFCGCGGNTIQFAAV-----CQKVISIDIDPAKLRLAQHNASVYGVS-HKIQF  242 (342)
Q Consensus       175 ~~e~~~~~i~~~~~------~~~~vLDlgcGtG~~~~~~a~~-----~~~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~  242 (342)
                      ||..+++.+...+.      ++.+|+|++||||++.+.+++.     ...++|+|+++.++..|+.|+..+|+. +++.+
T Consensus       201 TP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I  280 (542)
T 3lkd_A          201 TPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFL  280 (542)
T ss_dssp             CCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             ccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccce
Confidence            66666666665543      5779999999999999999876     578999999999999999999999985 47899


Q ss_pred             EEcccccc--C--CCCCccEEEEcCCCCCC
Q psy15742        243 IQGDFFAL--A--PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       243 ~~~D~~~~--~--~~~~~D~Ii~nPP~~~~  268 (342)
                      .++|.+..  +  ...+||+|++||||+..
T Consensus       281 ~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~  310 (542)
T 3lkd_A          281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAK  310 (542)
T ss_dssp             EESCTTTSCSCCSSCCCBSEEEECCCTTCC
T ss_pred             EecceecccccccccccccEEEecCCcCCc
Confidence            99999865  3  34689999999999953

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.31  E-value=5.8e-12  Score=111.32  Aligned_cols=78  Identities=17%  Similarity=0.282  Sum_probs=70.3

Q ss_pred             CCCeEEeccCCCcHHHHHHHH--hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC---CCCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~--~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~---~~~~D~Ii~nP  263 (342)
                      ++.+|||+|||+|..++.+++  .+.+|+|+|+|+.+++.|++|++..++.++++++++|+.+..+   ..+||+|++|+
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~  150 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA  150 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence            477999999999999999998  4789999999999999999999999997789999999988654   57899999998


Q ss_pred             CCC
Q psy15742        264 PWG  266 (342)
Q Consensus       264 P~~  266 (342)
                      +..
T Consensus       151 ~~~  153 (232)
T 3ntv_A          151 AKA  153 (232)
T ss_dssp             TSS
T ss_pred             cHH
Confidence            744

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.31  E-value=3.4e-12  Score=113.27  Aligned_cols=77  Identities=12%  Similarity=0.005  Sum_probs=67.1

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSP  263 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nP  263 (342)
                      .+|.+|||+|||+|..+..+++. +.+++|||+|+.+++.|+++....+.  +++++.+|+.+..   ++++||.|+.|+
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~FD~i~~D~  136 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYDT  136 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhcccccccCCceEEEee
Confidence            45889999999999999999887 57899999999999999999988775  7899999987653   567899999997


Q ss_pred             CCC
Q psy15742        264 PWG  266 (342)
Q Consensus       264 P~~  266 (342)
                      ...
T Consensus       137 ~~~  139 (236)
T 3orh_A          137 YPL  139 (236)
T ss_dssp             CCC
T ss_pred             eec
Confidence            754

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.31  E-value=1.6e-11  Score=107.35  Aligned_cols=83  Identities=24%  Similarity=0.319  Sum_probs=72.6

Q ss_pred             HHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccE
Q psy15742        180 AQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDV  258 (342)
Q Consensus       180 ~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~  258 (342)
                      .+.+...++++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++..++  .+++++++|+.+.. +.++||+
T Consensus        29 ~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~~D~  106 (227)
T 1ve3_A           29 EPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKTFDY  106 (227)
T ss_dssp             HHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTCEEE
T ss_pred             HHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCCCCcEEE
Confidence            34555556678899999999999999999988899999999999999999998887  37999999998865 4568999


Q ss_pred             EEEcCC
Q psy15742        259 VFLSPP  264 (342)
Q Consensus       259 Ii~nPP  264 (342)
                      |+++++
T Consensus       107 v~~~~~  112 (227)
T 1ve3_A          107 VIFIDS  112 (227)
T ss_dssp             EEEESC
T ss_pred             EEEcCc
Confidence            999999

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.30  E-value=1.2e-11  Score=114.17  Aligned_cols=85  Identities=26%  Similarity=0.381  Sum_probs=71.7

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC----CCccEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS----LQGDVV  259 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~----~~~D~I  259 (342)
                      .++|.+|||+|||+|+.+..+|..   ...|+|+|+++.+++.+++|++.+|+. +++++++|+.++...    .+||.|
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~fD~V  178 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHEVHYI  178 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCccccccCCCCEE
Confidence            457889999999999999999985   479999999999999999999999984 799999999887532    479999


Q ss_pred             EEcCCCCCCcccc
Q psy15742        260 FLSPPWGGPEYAR  272 (342)
Q Consensus       260 i~nPP~~~~~~~~  272 (342)
                      ++|||+.+.....
T Consensus       179 l~D~PcSg~G~~~  191 (309)
T 2b9e_A          179 LLDPSCSGSGMPS  191 (309)
T ss_dssp             EECCCCCC-----
T ss_pred             EEcCCcCCCCCCc
Confidence            9999998865433

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.30  E-value=9.3e-13  Score=118.48  Aligned_cols=86  Identities=16%  Similarity=0.239  Sum_probs=71.6

Q ss_pred             HHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCC
Q psy15742        177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQ  255 (342)
Q Consensus       177 e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~  255 (342)
                      +.+.+.+....+.+.+|||+|||+|.++..++..+.+|+|+|+|+.|++.|+++       .+++++++|+.+++ ++++
T Consensus        27 ~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~~s   99 (257)
T 4hg2_A           27 RALFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPPAS   99 (257)
T ss_dssp             HHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCSSC
T ss_pred             HHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccCCc
Confidence            445556666666678999999999999999999999999999999999877642       37999999999876 6679


Q ss_pred             ccEEEEcCCCCCCc
Q psy15742        256 GDVVFLSPPWGGPE  269 (342)
Q Consensus       256 ~D~Ii~nPP~~~~~  269 (342)
                      ||+|++.-.++..+
T Consensus       100 fD~v~~~~~~h~~~  113 (257)
T 4hg2_A          100 VDVAIAAQAMHWFD  113 (257)
T ss_dssp             EEEEEECSCCTTCC
T ss_pred             ccEEEEeeehhHhh
Confidence            99999987776554

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.30  E-value=1e-11  Score=108.10  Aligned_cols=133  Identities=16%  Similarity=0.005  Sum_probs=91.5

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nP  263 (342)
                      ++.+|||+|||+|.+++.+++.  +.+++|+|+|+.+++.|++|+..+++ ++++++++|+.+++   +.++||+|++++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~~  119 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNF  119 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence            4779999999999999999987  57999999999999999999999998 58999999998754   456899999998


Q ss_pred             CCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCC-C-HHHHHH-hhCCCcEEEEecc
Q psy15742        264 PWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTS-D-VFEIFH-DSGKKGSFISLTG  329 (342)
Q Consensus       264 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~l~~-~~~~~~~i~~i~~  329 (342)
                      |-....   .......+.    ....+..+.+.+.+++.+++.... . ...+.. +...++.+..+..
T Consensus       120 ~~~~~~---~~~~~~~~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  181 (214)
T 1yzh_A          120 SDPWPK---KRHEKRRLT----YKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWL  181 (214)
T ss_dssp             CCCCCS---GGGGGGSTT----SHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEES
T ss_pred             CCCccc---cchhhhccC----CHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeeccc
Confidence            832211   000000010    111444555667777777664322 1 122222 2234677776654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.30  E-value=1.1e-11  Score=106.10  Aligned_cols=79  Identities=18%  Similarity=0.102  Sum_probs=71.0

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~  268 (342)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++..++++ +++++++|+.+.+...+||+|+++.+++..
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~  110 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTFDRQYDFILSTVVLMFL  110 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCCCCCCEEEEEEESCGGGS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCCCCCCceEEEEcchhhhC
Confidence            4679999999999999999999889999999999999999999988874 699999999987656689999999877654

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.30  E-value=8.1e-12  Score=109.44  Aligned_cols=78  Identities=21%  Similarity=0.356  Sum_probs=68.2

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC---C----CCccE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---S----LQGDV  258 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~---~----~~~D~  258 (342)
                      ++.+|||+|||+|..++.+|+.   +.+|+|+|+|+.+++.|++|++.+|+.++++++++|+.+..+   .    .+||+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~  137 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  137 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence            4679999999999999999984   679999999999999999999999997789999999876532   1    58999


Q ss_pred             EEEcCCCC
Q psy15742        259 VFLSPPWG  266 (342)
Q Consensus       259 Ii~nPP~~  266 (342)
                      |++|.+..
T Consensus       138 V~~d~~~~  145 (221)
T 3u81_A          138 VFLDHWKD  145 (221)
T ss_dssp             EEECSCGG
T ss_pred             EEEcCCcc
Confidence            99997643

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.30  E-value=4.5e-12  Score=115.23  Aligned_cols=81  Identities=23%  Similarity=0.240  Sum_probs=71.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...|+.++++++++|+.+.+  ..++||+|+++-.+
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l  146 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL  146 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred             CCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence            4567999999999999999999999999999999999999999999998678999999999886  56789999998776


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      ...
T Consensus       147 ~~~  149 (285)
T 4htf_A          147 EWV  149 (285)
T ss_dssp             GGC
T ss_pred             hcc
Confidence            544

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.29  E-value=1.1e-11  Score=108.83  Aligned_cols=89  Identities=15%  Similarity=0.069  Sum_probs=73.8

Q ss_pred             HHHHHHHHhcC--CCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccC
Q psy15742        178 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA  251 (342)
Q Consensus       178 ~~~~~i~~~~~--~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~  251 (342)
                      .++..+....+  ++.+|||+|||+|..++.+|+.   +.+|+++|+|+.+++.|++|++.+|+. ++++++++|+.+..
T Consensus        43 ~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l  122 (221)
T 3dr5_A           43 QLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM  122 (221)
T ss_dssp             HHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG
T ss_pred             HHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH
Confidence            44445544443  2349999999999999999985   679999999999999999999999997 78999999998864


Q ss_pred             C---CCCccEEEEcCCCC
Q psy15742        252 P---SLQGDVVFLSPPWG  266 (342)
Q Consensus       252 ~---~~~~D~Ii~nPP~~  266 (342)
                      +   .++||+|++|++..
T Consensus       123 ~~~~~~~fD~V~~d~~~~  140 (221)
T 3dr5_A          123 SRLANDSYQLVFGQVSPM  140 (221)
T ss_dssp             GGSCTTCEEEEEECCCTT
T ss_pred             HHhcCCCcCeEEEcCcHH
Confidence            2   56899999998743

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.29  E-value=5.7e-12  Score=116.30  Aligned_cols=81  Identities=11%  Similarity=0.141  Sum_probs=72.6

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      +++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++|+..+|+.++++++++|+.+.+ +.++||+|+++-.+
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  195 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNEST  195 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCG
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCch
Confidence            46789999999999999999998 89999999999999999999999999778999999999875 45789999997665


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      ...
T Consensus       196 ~~~  198 (312)
T 3vc1_A          196 MYV  198 (312)
T ss_dssp             GGS
T ss_pred             hhC
Confidence            544

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.29  E-value=1.1e-11  Score=111.63  Aligned_cols=81  Identities=22%  Similarity=0.339  Sum_probs=72.9

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...|+.++++++.+|+.+.+ ++++||+|++...+
T Consensus        60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  139 (273)
T 3bus_A           60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESL  139 (273)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechh
Confidence            46889999999999999999986 88999999999999999999999998778999999998875 45689999998887


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      ...
T Consensus       140 ~~~  142 (273)
T 3bus_A          140 HHM  142 (273)
T ss_dssp             TTS
T ss_pred             hhC
Confidence            765

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.29  E-value=2.4e-11  Score=102.99  Aligned_cols=79  Identities=24%  Similarity=0.401  Sum_probs=70.5

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC-CCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-LQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~-~~~D~Ii~nPP~~  266 (342)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++|+..+++.++++++++|+.+..+. ..||+|+++++++
T Consensus        32 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~  111 (192)
T 1l3i_A           32 GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGG  111 (192)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECCchH
Confidence            467899999999999999999888899999999999999999999999866899999999874333 5899999998864

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.29  E-value=4.8e-12  Score=122.57  Aligned_cols=84  Identities=25%  Similarity=0.258  Sum_probs=73.3

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFL  261 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~  261 (342)
                      ..+|.+|||+|||+|+.+..+|..   ...|+|+|+|+.+++.+++|++.+|+.  +.++++|+.++.  ....||+|++
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~Il~  176 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHRVLL  176 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCEEEE
Confidence            456889999999999999999975   368999999999999999999999994  999999998765  2468999999


Q ss_pred             cCCCCCCcccc
Q psy15742        262 SPPWGGPEYAR  272 (342)
Q Consensus       262 nPP~~~~~~~~  272 (342)
                      |||+.+.....
T Consensus       177 D~PcSg~G~~r  187 (464)
T 3m6w_A          177 DAPCSGEGMFR  187 (464)
T ss_dssp             ECCCCCGGGTT
T ss_pred             CCCcCCccccc
Confidence            99998865443

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.29  E-value=9e-12  Score=105.73  Aligned_cols=86  Identities=17%  Similarity=0.051  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC
Q psy15742        177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL  254 (342)
Q Consensus       177 e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~  254 (342)
                      +.+-..+.+++++..+|||+|||+|.+++.++..  +.+++|+|+|+.|++.+++|+..+|+..++++  +|.....+.+
T Consensus        37 d~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~  114 (200)
T 3fzg_A           37 NDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKG  114 (200)
T ss_dssp             HHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTS
T ss_pred             HHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCC
Confidence            3444556666777889999999999999999776  66999999999999999999999998656666  6766656677


Q ss_pred             CccEEEEcCC
Q psy15742        255 QGDVVFLSPP  264 (342)
Q Consensus       255 ~~D~Ii~nPP  264 (342)
                      +||+|++.--
T Consensus       115 ~~DvVLa~k~  124 (200)
T 3fzg_A          115 TYDVVFLLKM  124 (200)
T ss_dssp             EEEEEEEETC
T ss_pred             CcChhhHhhH
Confidence            8999998533

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.29  E-value=6.7e-12  Score=112.62  Aligned_cols=77  Identities=17%  Similarity=0.192  Sum_probs=66.9

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----CCCccEEEEc
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----SLQGDVVFLS  262 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----~~~~D~Ii~n  262 (342)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++..   .++++++++|+.++..     ..+|| |++|
T Consensus        28 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~N  103 (255)
T 3tqs_A           28 QKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSSVKTDKPLR-VVGN  103 (255)
T ss_dssp             CTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGGSCCSSCEE-EEEE
T ss_pred             CCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHHhccCCCeE-EEec
Confidence            4578999999999999999999999999999999999999999865   2489999999998752     24688 9999


Q ss_pred             CCCCCC
Q psy15742        263 PPWGGP  268 (342)
Q Consensus       263 PP~~~~  268 (342)
                      |||...
T Consensus       104 lPY~is  109 (255)
T 3tqs_A          104 LPYNIS  109 (255)
T ss_dssp             CCHHHH
T ss_pred             CCcccC
Confidence            998653

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.29  E-value=1.3e-11  Score=106.50  Aligned_cols=120  Identities=13%  Similarity=-0.001  Sum_probs=87.9

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      ++.+|||+|||+|.++..++..  +.+++|+|+|+.+++.|++|+..++++ +++++++|+.+..+.++||+|+++.- .
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~-~  142 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPSEPPFDGVISRAF-A  142 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCCCSCEEEEECSCS-S
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCCccCCcCEEEEecc-C
Confidence            3679999999999999999986  789999999999999999999999985 59999999998876678999998642 0


Q ss_pred             CCccccccccccccCcCCCCchhhhHhhhccCCCceeecC-CCCCHHHHHHhhCCCcEEEEecc
Q psy15742        267 GPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLP-RTSDVFEIFHDSGKKGSFISLTG  329 (342)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~~~~~~~~~i~~i~~  329 (342)
                        +.                ...+..+.+.+.+++.+++. .......+..+.. ++++..+..
T Consensus       143 --~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~-g~~~~~~~~  187 (207)
T 1jsx_A          143 --SL----------------NDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE-EYQVESVVK  187 (207)
T ss_dssp             --SH----------------HHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT-TEEEEEEEE
T ss_pred             --CH----------------HHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc-CCceeeeee
Confidence              10                01233344445555555442 2234555555544 888776553

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.29  E-value=4.7e-12  Score=122.42  Aligned_cols=85  Identities=24%  Similarity=0.263  Sum_probs=74.3

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFL  261 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~  261 (342)
                      ..+|.+|||+|||+|+.++.+|..   ...|+|+|+|+.+++.+++|++.+|+. ++.++++|+.++.  ..+.||+|++
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~~~~FD~Il~  181 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHFSGFFDRIVV  181 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhccccCCEEEE
Confidence            456889999999999999999975   369999999999999999999999995 7999999998764  2468999999


Q ss_pred             cCCCCCCcccc
Q psy15742        262 SPPWGGPEYAR  272 (342)
Q Consensus       262 nPP~~~~~~~~  272 (342)
                      |||+.+.....
T Consensus       182 DaPCSg~G~~r  192 (456)
T 3m4x_A          182 DAPCSGEGMFR  192 (456)
T ss_dssp             ECCCCCGGGTT
T ss_pred             CCCCCCccccc
Confidence            99998875444

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.29  E-value=1.2e-11  Score=107.14  Aligned_cols=78  Identities=19%  Similarity=0.153  Sum_probs=70.2

Q ss_pred             CeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCCCC
Q psy15742        191 DVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~~~  268 (342)
                      .+|||+|||+|.++..+++. +.+++|+|+|+.+++.|++++...++.++++++++|+.+.+ +.++||+|+++..++..
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~  124 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW  124 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGC
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhc
Confidence            39999999999999999997 77999999999999999999999998778999999999875 45689999998876544

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.28  E-value=4e-12  Score=111.27  Aligned_cols=77  Identities=13%  Similarity=0.128  Sum_probs=68.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC------CCccEE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS------LQGDVV  259 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~------~~~D~I  259 (342)
                      ++.+|||+|||+|..+..+++.   +.+|+|+|+++.+++.|++|+...|+.++++++++|+.+..+.      .+||+|
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v  137 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI  137 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence            4679999999999999999987   6899999999999999999999999977899999999875421      579999


Q ss_pred             EEcCCC
Q psy15742        260 FLSPPW  265 (342)
Q Consensus       260 i~nPP~  265 (342)
                      ++|++.
T Consensus       138 ~~d~~~  143 (223)
T 3duw_A          138 FIDADK  143 (223)
T ss_dssp             EECSCG
T ss_pred             EEcCCc
Confidence            999883

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.28  E-value=1.1e-11  Score=109.56  Aligned_cols=73  Identities=11%  Similarity=0.044  Sum_probs=63.9

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc--C-CCCCccEEEEc
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL--A-PSLQGDVVFLS  262 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~--~-~~~~~D~Ii~n  262 (342)
                      +++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++.+..+.  +++++++|+.+.  + ++++||+|++|
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~fD~V~~d  135 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYD  135 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCC--CeEEEecCHHHhhcccCCCceEEEEEC
Confidence            457899999999999999998764 4899999999999999999987773  899999999887  3 55789999995

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.28  E-value=4.3e-12  Score=113.87  Aligned_cols=81  Identities=21%  Similarity=0.342  Sum_probs=67.1

Q ss_pred             CCC--CeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc-------C-CCCcEEEEEccccccCC--CCC
Q psy15742        188 KAS--DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY-------G-VSHKIQFIQGDFFALAP--SLQ  255 (342)
Q Consensus       188 ~~~--~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~-------g-l~~~i~~~~~D~~~~~~--~~~  255 (342)
                      +++  .+|||+|||+|..++.+|..+.+|+++|+++.+.+.+++|++..       + +.++++++++|+.++++  ...
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~  164 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPR  164 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSC
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCccc
Confidence            445  89999999999999999999889999999999877777776533       3 32479999999988753  237


Q ss_pred             ccEEEEcCCCCCC
Q psy15742        256 GDVVFLSPPWGGP  268 (342)
Q Consensus       256 ~D~Ii~nPP~~~~  268 (342)
                      ||+|++||||...
T Consensus       165 fDvV~lDP~y~~~  177 (258)
T 2oyr_A          165 PQVVYLDPMFPHK  177 (258)
T ss_dssp             CSEEEECCCCCCC
T ss_pred             CCEEEEcCCCCCc
Confidence            9999999999764

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.27  E-value=9e-12  Score=110.18  Aligned_cols=135  Identities=16%  Similarity=0.106  Sum_probs=92.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++|+..+|+. +++++.+|+.... ....||+|+++.+.
T Consensus        90 ~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~Ii~~~~~  168 (235)
T 1jg1_A           90 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPPKAPYDVIIVTAGA  168 (235)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcccCCCCCCCccEEEECCcH
Confidence            457899999999999999999885 89999999999999999999999985 6999999974333 33459999998875


Q ss_pred             CCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEecccCCCCCCCccc
Q psy15742        266 GGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQMFSPSQDME  340 (342)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~~~~fp~t~h~e  340 (342)
                      ....     ..+.+.+++  ||..++.+........+..         +.+ ...+++...+.+.+++|.+.|..
T Consensus       169 ~~~~-----~~~~~~L~p--gG~lvi~~~~~~~~~~l~~---------~~~-~~~~~~~~~~~~~~f~p~~~~~~  226 (235)
T 1jg1_A          169 PKIP-----EPLIEQLKI--GGKLIIPVGSYHLWQELLE---------VRK-TKDGIKIKNHGGVAFVPLIGEYG  226 (235)
T ss_dssp             SSCC-----HHHHHTEEE--EEEEEEEECSSSSCEEEEE---------EEE-ETTEEEEEEEEEECCCBCBSTTS
T ss_pred             HHHH-----HHHHHhcCC--CcEEEEEEecCCCccEEEE---------EEE-eCCeEEEEEeccEEEEEccCCCc
Confidence            5331     122233332  3332222211110001111         111 13567888899999999998864

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.26  E-value=1.3e-11  Score=107.40  Aligned_cols=80  Identities=18%  Similarity=0.255  Sum_probs=70.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP  263 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nP  263 (342)
                      .++.+|||+|||+|.++..+++.+   .+|+|+|+|+.+++.|++++..++++ +++++++|+.+.+ +.++||+|+++.
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~  114 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDNTVDFIFMAF  114 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSSCEEEEEEES
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCCCeeEEEeeh
Confidence            457899999999999999999875   79999999999999999999999985 7999999998875 456899999987


Q ss_pred             CCCCC
Q psy15742        264 PWGGP  268 (342)
Q Consensus       264 P~~~~  268 (342)
                      .++..
T Consensus       115 ~l~~~  119 (219)
T 3dh0_A          115 TFHEL  119 (219)
T ss_dssp             CGGGC
T ss_pred             hhhhc
Confidence            66544

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.26  E-value=8.8e-12  Score=113.06  Aligned_cols=78  Identities=23%  Similarity=0.293  Sum_probs=71.1

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      +.++.+|||+|||+|.+++.+++.   +.+|+++|+|+.+++.|++|++.+++.++++++.+|+.+..+...||+|++||
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~~  189 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDV  189 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEECC
Confidence            456889999999999999999987   57999999999999999999999998668999999999876667899999999


Q ss_pred             C
Q psy15742        264 P  264 (342)
Q Consensus       264 P  264 (342)
                      |
T Consensus       190 ~  190 (277)
T 1o54_A          190 P  190 (277)
T ss_dssp             S
T ss_pred             c
Confidence            8

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.26  E-value=6.3e-12  Score=119.30  Aligned_cols=77  Identities=18%  Similarity=0.209  Sum_probs=68.2

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccccccCC---CCCccEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--C-QKVISIDIDPAKLRLAQHNASVYGVSHK-IQFIQGDFFALAP---SLQGDVVF  260 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~-i~~~~~D~~~~~~---~~~~D~Ii  260 (342)
                      ++|.+|||+|||+|.+++.+|+.  | .+|+++|+|+.+++.+++|++.||++++ ++++++|+.++..   ...||+|+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~  130 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD  130 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence            35789999999999999999985  3 6899999999999999999999999766 9999999987654   34799999


Q ss_pred             EcCC
Q psy15742        261 LSPP  264 (342)
Q Consensus       261 ~nPP  264 (342)
                      +|||
T Consensus       131 lDP~  134 (392)
T 3axs_A          131 LDPF  134 (392)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            9994

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.26  E-value=2.7e-11  Score=106.77  Aligned_cols=74  Identities=18%  Similarity=0.135  Sum_probs=64.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc----cCCCCCccEEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA----LAPSLQGDVVFL  261 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~----~~~~~~~D~Ii~  261 (342)
                      +++.+|||+|||+|.++..+++..  .+|+|+|+|+.+++.|++|++.+   +++.++.+|+.+    .+....||+|+.
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVDVIYE  149 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTSCCEEEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccCccEEEEEE
Confidence            457899999999999999999873  79999999999999999998765   489999999987    443368999998


Q ss_pred             cCC
Q psy15742        262 SPP  264 (342)
Q Consensus       262 nPP  264 (342)
                      ++|
T Consensus       150 ~~~  152 (230)
T 1fbn_A          150 DVA  152 (230)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            876

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.25  E-value=1.1e-11  Score=112.45  Aligned_cols=77  Identities=14%  Similarity=0.173  Sum_probs=69.5

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGDFFALAPSLQGDVVFLS  262 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~-gl~~~i~~~~~D~~~~~~~~~~D~Ii~n  262 (342)
                      +.++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++|++.+ |. ++++++++|+.+..+..+||+|++|
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~~~~fD~Vi~~  186 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFISDQMYDAVIAD  186 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCCSCCEEEEEEC
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCcCCCccEEEEc
Confidence            346789999999999999999987   789999999999999999999988 85 5899999999986666789999999


Q ss_pred             CC
Q psy15742        263 PP  264 (342)
Q Consensus       263 PP  264 (342)
                      +|
T Consensus       187 ~~  188 (275)
T 1yb2_A          187 IP  188 (275)
T ss_dssp             CS
T ss_pred             Cc
Confidence            88

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.25  E-value=2.4e-11  Score=108.49  Aligned_cols=76  Identities=16%  Similarity=0.239  Sum_probs=68.4

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----CCCccEEEE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFL  261 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----~~~~D~Ii~  261 (342)
                      ++.+|||+|||+|..+..+++.   +.+|+|+|+|+.+++.|++|++..|+.++++++.+|+.+..+    ..+||+|++
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~  142 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI  142 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence            4779999999999999999987   689999999999999999999999997789999999987532    348999999


Q ss_pred             cCC
Q psy15742        262 SPP  264 (342)
Q Consensus       262 nPP  264 (342)
                      |.+
T Consensus       143 d~~  145 (248)
T 3tfw_A          143 DAD  145 (248)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            986

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.25  E-value=5.1e-12  Score=116.25  Aligned_cols=88  Identities=18%  Similarity=0.154  Sum_probs=75.9

Q ss_pred             HHHHHhcCCCCeEEeccCCCcHHHHHHH--Hh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCcc
Q psy15742        181 QHIASRCKASDVVIDGFCGCGGNTIQFA--AV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGD  257 (342)
Q Consensus       181 ~~i~~~~~~~~~vLDlgcGtG~~~~~~a--~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D  257 (342)
                      +.+...++++.+|||+|||+|.++..++  .. +.+|+|+|+|+.+++.|++|+..+|+.++++++++|+.+.+..++||
T Consensus       110 ~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  189 (305)
T 3ocj_A          110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYD  189 (305)
T ss_dssp             HHHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEE
T ss_pred             HHHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeE
Confidence            3344556788999999999999999985  23 67999999999999999999999998777999999999987558999


Q ss_pred             EEEEcCCCCCC
Q psy15742        258 VVFLSPPWGGP  268 (342)
Q Consensus       258 ~Ii~nPP~~~~  268 (342)
                      +|+++.+++..
T Consensus       190 ~v~~~~~~~~~  200 (305)
T 3ocj_A          190 LLTSNGLNIYE  200 (305)
T ss_dssp             EEECCSSGGGC
T ss_pred             EEEECChhhhc
Confidence            99999887654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.25  E-value=3.4e-11  Score=108.90  Aligned_cols=78  Identities=17%  Similarity=0.131  Sum_probs=68.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEEEcCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSPP  264 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii~nPP  264 (342)
                      +.++ +|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++.  +  ++++++++|+.++...  ..+|.|++|+|
T Consensus        45 ~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~--~--~~v~vi~~D~l~~~~~~~~~~~~iv~NlP  119 (271)
T 3fut_A           45 PFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS--G--LPVRLVFQDALLYPWEEVPQGSLLVANLP  119 (271)
T ss_dssp             CCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT--T--SSEEEEESCGGGSCGGGSCTTEEEEEEEC
T ss_pred             CCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC--C--CCEEEEECChhhCChhhccCccEEEecCc
Confidence            3467 99999999999999999999999999999999999999986  2  4899999999987532  36899999999


Q ss_pred             CCCCc
Q psy15742        265 WGGPE  269 (342)
Q Consensus       265 ~~~~~  269 (342)
                      |...+
T Consensus       120 y~iss  124 (271)
T 3fut_A          120 YHIAT  124 (271)
T ss_dssp             SSCCH
T ss_pred             ccccH
Confidence            98764

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.25  E-value=2.5e-11  Score=105.49  Aligned_cols=131  Identities=17%  Similarity=0.108  Sum_probs=92.5

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEcC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSP  263 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nP  263 (342)
                      .++.+|||+|||+|.++..+++.+   .+|+|+|+|+.+++.|++++..+++. +++++.+|+....+ ..+||+|+++.
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~~  154 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYEPLAPYDRIYTTA  154 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCCCCCeeEEEECC
Confidence            457899999999999999999874   89999999999999999999988884 69999999866543 56899999998


Q ss_pred             CCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHh--hCCCcEEEEecccCCCCCCCccc
Q psy15742        264 PWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHD--SGKKGSFISLTGRQMFSPSQDME  340 (342)
Q Consensus       264 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~--~~~~~~i~~i~~~~~fp~t~h~e  340 (342)
                      +++...     ..+.+++++  ||..++.+.            .. . ..+...  ....+....+.+..++|.+.+.+
T Consensus       155 ~~~~~~-----~~~~~~L~p--gG~lv~~~~------------~~-~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  212 (215)
T 2yxe_A          155 AGPKIP-----EPLIRQLKD--GGKLLMPVG------------RY-L-QRLVLAEKRGDEIIIKDCGPVAFVPLVGKEG  212 (215)
T ss_dssp             BBSSCC-----HHHHHTEEE--EEEEEEEES------------SS-S-EEEEEEEEETTEEEEEEEEEECCCBCBSTTS
T ss_pred             chHHHH-----HHHHHHcCC--CcEEEEEEC------------CC-C-cEEEEEEEeCCEEEEEEeccEEEEecccccc
Confidence            866432     122333333  333222221            11 1 111111  12456777888888888887765

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.25  E-value=1.8e-11  Score=107.19  Aligned_cols=76  Identities=21%  Similarity=0.173  Sum_probs=68.5

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC-------CCccE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-------LQGDV  258 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~-------~~~D~  258 (342)
                      ++.+|||+|||+|..++.+++.   +.+|+|+|+|+.+++.|+++++.+|+.++++++++|+.+..+.       .+||+
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL  143 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence            4679999999999999999987   7899999999999999999999999977899999999775421       68999


Q ss_pred             EEEcCC
Q psy15742        259 VFLSPP  264 (342)
Q Consensus       259 Ii~nPP  264 (342)
                      |++|++
T Consensus       144 v~~~~~  149 (225)
T 3tr6_A          144 IYIDAD  149 (225)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            999998

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.25  E-value=3.4e-11  Score=105.01  Aligned_cols=130  Identities=11%  Similarity=0.010  Sum_probs=88.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nP  263 (342)
                      ++.+|||+|||+|.+++.+|+.  +.+++|+|+|+.+++.|++|+..+|+ .+++++++|+.++.   +.+.||.|+++.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~~  116 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNF  116 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence            3679999999999999999987  78999999999999999999999998 47999999998753   456899999875


Q ss_pred             C--CCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCC-C-HHHHHH-hhCCCcEEEEec
Q psy15742        264 P--WGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTS-D-VFEIFH-DSGKKGSFISLT  328 (342)
Q Consensus       264 P--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~l~~-~~~~~~~i~~i~  328 (342)
                      |  |....     ....++..    ...+..+.+.+.+++.+++.... . ...+.. +...++....+.
T Consensus       117 ~~p~~~~~-----~~~~rl~~----~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~~~~  177 (213)
T 2fca_A          117 SDPWPKKR-----HEKRRLTY----SHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYVS  177 (213)
T ss_dssp             CCCCCSGG-----GGGGSTTS----HHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCcCcc-----ccccccCc----HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccccc
Confidence            4  22110     00011110    11445566677777777663322 1 222222 223356666554

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.25  E-value=1.4e-11  Score=113.00  Aligned_cols=78  Identities=15%  Similarity=0.302  Sum_probs=68.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---C---CCCccEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---P---SLQGDVV  259 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~---~~~~D~I  259 (342)
                      +++.+|||+|||+|+.+..+++.  +.+|+|+|+|+.+++.|++|++.+|  ++++++++|+.++.   .   ..+||.|
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g~~~~D~V  102 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKVDGI  102 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcCCCCCCEE
Confidence            46789999999999999999987  5899999999999999999999887  48999999998763   1   1479999


Q ss_pred             EEcCCCCC
Q psy15742        260 FLSPPWGG  267 (342)
Q Consensus       260 i~nPP~~~  267 (342)
                      ++|||+..
T Consensus       103 l~D~gvSs  110 (301)
T 1m6y_A          103 LMDLGVST  110 (301)
T ss_dssp             EEECSCCH
T ss_pred             EEcCccch
Confidence            99999863

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.24  E-value=2.6e-11  Score=113.76  Aligned_cols=80  Identities=18%  Similarity=0.174  Sum_probs=70.6

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+ +++.|+++++.+|+.++++++++|+.++....+||+|++++++.
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~  127 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY  127 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBT
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchh
Confidence            357899999999999999999884 5999999996 88999999999999779999999999876456899999999865


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       128 ~~  129 (348)
T 2y1w_A          128 ML  129 (348)
T ss_dssp             TB
T ss_pred             cC
Confidence            43

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.24  E-value=2.2e-11  Score=114.01  Aligned_cols=76  Identities=18%  Similarity=0.339  Sum_probs=67.9

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      ++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.|++|+..+++  +++++.+|+.+.. .++||+|++||||+
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~Iv~~~~~~  272 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV--EGEVFASNVFSEV-KGRFDMIISNPPFH  272 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTC-CSCEEEEEECCCCC
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCEEEEccccccc-cCCeeEEEECCCcc
Confidence            46699999999999999999874  5899999999999999999999988  4678999998765 56899999999998


Q ss_pred             C
Q psy15742        267 G  267 (342)
Q Consensus       267 ~  267 (342)
                      .
T Consensus       273 ~  273 (343)
T 2pjd_A          273 D  273 (343)
T ss_dssp             S
T ss_pred             c
Confidence            5

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.24  E-value=2.9e-11  Score=117.92  Aligned_cols=82  Identities=20%  Similarity=0.259  Sum_probs=72.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~nP  263 (342)
                      ++.+|||+|||+|+.+..+|..   ...|+|+|+|+.+++.+++|++.+|+. ++.++++|+.++.  ....||.|++||
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~~fD~Il~D~  195 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPEMFDAILLDA  195 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhccccCCEEEECC
Confidence            7889999999999999999986   379999999999999999999999985 7999999998764  346899999999


Q ss_pred             CCCCCccc
Q psy15742        264 PWGGPEYA  271 (342)
Q Consensus       264 P~~~~~~~  271 (342)
                      |+.+....
T Consensus       196 PcSg~G~~  203 (479)
T 2frx_A          196 PCSGEGVV  203 (479)
T ss_dssp             CCCCGGGG
T ss_pred             CcCCcccc
Confidence            99876543

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.24  E-value=3.3e-11  Score=114.17  Aligned_cols=78  Identities=15%  Similarity=0.118  Sum_probs=69.2

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc-cCC--CCCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA-LAP--SLQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~-~~~--~~~~D~Ii~nP  263 (342)
                      ++.+|||+| |+|.+++.++..+  .+|+|+|+|+.+++.|++|++.+|+. +++++++|+.+ ++.  .++||+|++||
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~~  249 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITDP  249 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEECC
Confidence            478999999 9999999999874  69999999999999999999999986 89999999998 432  35899999999


Q ss_pred             CCCCC
Q psy15742        264 PWGGP  268 (342)
Q Consensus       264 P~~~~  268 (342)
                      ||+..
T Consensus       250 p~~~~  254 (373)
T 2qm3_A          250 PETLE  254 (373)
T ss_dssp             CSSHH
T ss_pred             CCchH
Confidence            98753

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.24  E-value=2.9e-11  Score=106.68  Aligned_cols=140  Identities=14%  Similarity=0.049  Sum_probs=90.7

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVV  259 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~I  259 (342)
                      +++|.+|||+|||+|.++..+|+.   ..+|+|+|+++.|++.++++++..+   ++..+.+|..+..    ....+|+|
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~---ni~~V~~d~~~p~~~~~~~~~vDvV  151 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR---NIFPILGDARFPEKYRHLVEGVDGL  151 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT---TEEEEESCTTCGGGGTTTCCCEEEE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc---CeeEEEEeccCccccccccceEEEE
Confidence            468999999999999999999986   4689999999999999999987543   7899999887642    34589999


Q ss_pred             EEcCCCCCCccccccccccccCcCCCCchhhhHh-hhccCCCceeecCCCCC-HHHHHHhhCCCcEEEEecccCCCCCC
Q psy15742        260 FLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQV-ARGISPNVGYYLPRTSD-VFEIFHDSGKKGSFISLTGRQMFSPS  336 (342)
Q Consensus       260 i~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~i~~i~~~~~fp~t  336 (342)
                      ++|.|+.... ......+...+++  ||..++.+ .+..    ....|.... ......+...||++.+.....-|+.+
T Consensus       152 f~d~~~~~~~-~~~l~~~~r~LKp--GG~lvI~ik~r~~----d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~pf~~~  223 (233)
T 4df3_A          152 YADVAQPEQA-AIVVRNARFFLRD--GGYMLMAIKARSI----DVTTEPSEVYKREIKTLMDGGLEIKDVVHLDPFDRD  223 (233)
T ss_dssp             EECCCCTTHH-HHHHHHHHHHEEE--EEEEEEEEECCHH----HHHTCCCHHHHHHHHHHHHTTCCEEEEEECTTTSTT
T ss_pred             EEeccCChhH-HHHHHHHHHhccC--CCEEEEEEecccC----CCCCChHHHHHHHHHHHHHCCCEEEEEEccCCCCCc
Confidence            9998866421 1112222334433  33322211 0000    000011111 22333445678999888877777764

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.24  E-value=2.8e-11  Score=114.60  Aligned_cols=78  Identities=22%  Similarity=0.212  Sum_probs=68.4

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc---------------CCCCcEEEEEccccccC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY---------------GVSHKIQFIQGDFFALA  251 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~---------------gl~~~i~~~~~D~~~~~  251 (342)
                      ++.+|||+|||+|.+++.+|+.  +.+|+++|+|+.+++.+++|++.+               |+. +++++++|+.++.
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHH
Confidence            4789999999999999999987  468999999999999999999999               884 4999999998765


Q ss_pred             C--CCCccEEEEcCCCCC
Q psy15742        252 P--SLQGDVVFLSPPWGG  267 (342)
Q Consensus       252 ~--~~~~D~Ii~nPP~~~  267 (342)
                      .  ...||+|++|||+..
T Consensus       126 ~~~~~~fD~I~lDP~~~~  143 (378)
T 2dul_A          126 AERHRYFHFIDLDPFGSP  143 (378)
T ss_dssp             HHSTTCEEEEEECCSSCC
T ss_pred             HhccCCCCEEEeCCCCCH
Confidence            2  347999999998643

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.24  E-value=1.2e-11  Score=113.36  Aligned_cols=91  Identities=14%  Similarity=0.106  Sum_probs=73.6

Q ss_pred             HHHHHHHHhc-CCCCeEEeccCCCcHHHHHHHH---hCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccccccC-
Q psy15742        178 KVAQHIASRC-KASDVVIDGFCGCGGNTIQFAA---VCQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGDFFALA-  251 (342)
Q Consensus       178 ~~~~~i~~~~-~~~~~vLDlgcGtG~~~~~~a~---~~~~v~gvD~s~~~l~~a~~n~~~~-gl~~~i~~~~~D~~~~~-  251 (342)
                      .+.+.+.... +++.+|||+|||+|.++..+++   .+.+|+|+|+|+.+++.|+++++.. +...+++++++|+.+++ 
T Consensus        24 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~  103 (299)
T 3g5t_A           24 DFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKF  103 (299)
T ss_dssp             HHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGG
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCc
Confidence            3334444443 4688999999999999999995   5889999999999999999999887 44468999999998865 


Q ss_pred             CC------CCccEEEEcCCCCCC
Q psy15742        252 PS------LQGDVVFLSPPWGGP  268 (342)
Q Consensus       252 ~~------~~~D~Ii~nPP~~~~  268 (342)
                      +.      ++||+|+++..++..
T Consensus       104 ~~~~~~~~~~fD~V~~~~~l~~~  126 (299)
T 3g5t_A          104 LGADSVDKQKIDMITAVECAHWF  126 (299)
T ss_dssp             GCTTTTTSSCEEEEEEESCGGGS
T ss_pred             cccccccCCCeeEEeHhhHHHHh
Confidence            33      689999998776655

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.24  E-value=1.7e-11  Score=111.97  Aligned_cols=80  Identities=14%  Similarity=0.201  Sum_probs=71.5

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...|+.++++++++|+.+.+ ++++||+|++.-..
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  160 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF  160 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchh
Confidence            56889999999999999999987 88999999999999999999999998778999999999876 45689999997665


Q ss_pred             CC
Q psy15742        266 GG  267 (342)
Q Consensus       266 ~~  267 (342)
                      ..
T Consensus       161 ~~  162 (297)
T 2o57_A          161 LH  162 (297)
T ss_dssp             GG
T ss_pred             hh
Confidence            44

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.23  E-value=1e-11  Score=111.03  Aligned_cols=76  Identities=20%  Similarity=0.239  Sum_probs=68.3

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--------CCCcc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--------SLQGD  257 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--------~~~~D  257 (342)
                      ++.+|||+|||+|..++.+++.   +.+|+++|+|+.+++.|++|++..|+.++++++.+|+.+..+        .++||
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  158 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  158 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence            4679999999999999999986   689999999999999999999999987789999999987532        46899


Q ss_pred             EEEEcCC
Q psy15742        258 VVFLSPP  264 (342)
Q Consensus       258 ~Ii~nPP  264 (342)
                      +|++|.+
T Consensus       159 ~V~~d~~  165 (247)
T 1sui_A          159 FIFVDAD  165 (247)
T ss_dssp             EEEECSC
T ss_pred             EEEEcCc
Confidence            9999976

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.23  E-value=3.3e-11  Score=109.72  Aligned_cols=75  Identities=23%  Similarity=0.254  Sum_probs=66.0

Q ss_pred             hcCCCCeEEeccCCCcHHH-HHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742        186 RCKASDVVIDGFCGCGGNT-IQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  262 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~-~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n  262 (342)
                      .++++.+|||+|||+|.++ +.+|+. +.+|+|+|+|+++++.|+++++..|+ ++++++++|+.+++ +.+||+|+++
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~-d~~FDvV~~~  195 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID-GLEFDVLMVA  195 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG-GCCCSEEEEC
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC-CCCcCEEEEC
Confidence            4567999999999998765 556664 88999999999999999999999999 79999999999875 5789999985

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.23  E-value=1e-11  Score=119.12  Aligned_cols=84  Identities=24%  Similarity=0.406  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhcC--CCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q psy15742        176 PEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  250 (342)
Q Consensus       176 ~e~~~~~i~~~~~--~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~  250 (342)
                      |+.+++.+.+.+.  ++.+|||+|||+|.+++.+++.   +.+++|+|+++.+++.|          .+++++++|+.++
T Consensus        24 P~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~   93 (421)
T 2ih2_A           24 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLW   93 (421)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGC
T ss_pred             CHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhc
Confidence            3444444444443  3669999999999999999974   57999999999999877          3789999999998


Q ss_pred             CCCCCccEEEEcCCCCCCc
Q psy15742        251 APSLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       251 ~~~~~~D~Ii~nPP~~~~~  269 (342)
                      .+..+||+|++||||....
T Consensus        94 ~~~~~fD~Ii~NPPy~~~~  112 (421)
T 2ih2_A           94 EPGEAFDLILGNPPYGIVG  112 (421)
T ss_dssp             CCSSCEEEEEECCCCCCBS
T ss_pred             CccCCCCEEEECcCccCcc
Confidence            7667899999999998764

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.23  E-value=1.4e-11  Score=122.01  Aligned_cols=96  Identities=23%  Similarity=0.347  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHhcCC-CCeEEeccCCCcHHHHHHHHh-----------------CCEEEEEeCCHHHHHHHHHHHHHcC
Q psy15742        174 VTPEKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAV-----------------CQKVISIDIDPAKLRLAQHNASVYG  235 (342)
Q Consensus       174 ~~~e~~~~~i~~~~~~-~~~vLDlgcGtG~~~~~~a~~-----------------~~~v~gvD~s~~~l~~a~~n~~~~g  235 (342)
                      .||..+++.+...+.+ ..+|+|++||||++.+.+++.                 ...++|+|+++.+++.|+.|+..+|
T Consensus       228 yTP~~Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g  307 (544)
T 3khk_A          228 YTPKSIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG  307 (544)
T ss_dssp             CCCHHHHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT
T ss_pred             eCCHHHHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC
Confidence            4777788887776643 349999999999999988642                 3589999999999999999999999


Q ss_pred             CCCcEEEEEccccccC--CCCCccEEEEcCCCCCCc
Q psy15742        236 VSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       236 l~~~i~~~~~D~~~~~--~~~~~D~Ii~nPP~~~~~  269 (342)
                      +..++.+.++|.+..+  +..+||+|++||||+...
T Consensus       308 i~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~  343 (544)
T 3khk_A          308 IDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKD  343 (544)
T ss_dssp             CCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCS
T ss_pred             CCcccceeccchhcCcccccccccEEEECCCcCCcc
Confidence            8656555899987654  346899999999999753

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.22  E-value=1.7e-11  Score=115.07  Aligned_cols=79  Identities=20%  Similarity=0.142  Sum_probs=69.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+| .+++.|+++++.+++.++++++++|+.++. +.++||+|+++++.
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            357899999999999999999985 599999999 599999999999999778999999999875 45789999999864


Q ss_pred             CC
Q psy15742        266 GG  267 (342)
Q Consensus       266 ~~  267 (342)
                      ..
T Consensus       144 ~~  145 (349)
T 3q7e_A          144 YC  145 (349)
T ss_dssp             BT
T ss_pred             cc
Confidence            43

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.22  E-value=3.4e-11  Score=106.30  Aligned_cols=87  Identities=18%  Similarity=0.279  Sum_probs=73.3

Q ss_pred             HHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCc
Q psy15742        178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQG  256 (342)
Q Consensus       178 ~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~  256 (342)
                      .+++.+...++++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++..    ..+++++++|+.+.+ +..+|
T Consensus        42 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~f  117 (242)
T 3l8d_A           42 TIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGE----GPDLSFIKGDLSSLPFENEQF  117 (242)
T ss_dssp             THHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTC----BTTEEEEECBTTBCSSCTTCE
T ss_pred             HHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcc----cCCceEEEcchhcCCCCCCCc
Confidence            3445556666778899999999999999999999999999999999999998752    247999999999876 46789


Q ss_pred             cEEEEcCCCCCC
Q psy15742        257 DVVFLSPPWGGP  268 (342)
Q Consensus       257 D~Ii~nPP~~~~  268 (342)
                      |+|++...++..
T Consensus       118 D~v~~~~~l~~~  129 (242)
T 3l8d_A          118 EAIMAINSLEWT  129 (242)
T ss_dssp             EEEEEESCTTSS
T ss_pred             cEEEEcChHhhc
Confidence            999998777655

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.22  E-value=2.5e-11  Score=114.60  Aligned_cols=75  Identities=16%  Similarity=0.175  Sum_probs=68.3

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  264 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP  264 (342)
                      +|++|||+|||||.+++.+|+.| .+|+|||.|+ +++.|+++++.||+.++++++++|+.++....++|+|++++-
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~  158 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWM  158 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCC
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecc
Confidence            57899999999999999999984 6899999996 899999999999998899999999998875678999999765

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.22  E-value=4.2e-11  Score=106.87  Aligned_cols=77  Identities=23%  Similarity=0.229  Sum_probs=69.3

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEcccccc-CCCCCccEEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGDFFAL-APSLQGDVVFL  261 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~-gl~~~i~~~~~D~~~~-~~~~~~D~Ii~  261 (342)
                      +.++.+|||+|||+|.++..+++.   +.+|+++|+|+.+++.|++|++.+ |. ++++++++|+.+. .+...||+|++
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~~~~~~D~v~~  172 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV-ENVRFHLGKLEEAELEEAAYDGVAL  172 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC-CCEEEEESCGGGCCCCTTCEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-CCEEEEECchhhcCCCCCCcCEEEE
Confidence            357889999999999999999987   689999999999999999999988 74 5899999999987 45568999999


Q ss_pred             cCC
Q psy15742        262 SPP  264 (342)
Q Consensus       262 nPP  264 (342)
                      |+|
T Consensus       173 ~~~  175 (258)
T 2pwy_A          173 DLM  175 (258)
T ss_dssp             ESS
T ss_pred             CCc
Confidence            988

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.22  E-value=6.3e-11  Score=114.95  Aligned_cols=85  Identities=19%  Similarity=0.254  Sum_probs=74.4

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC---CCCccEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--C-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVF  260 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~---~~~~D~Ii  260 (342)
                      .+++.+|||+|||+|+.+..++..  + .+|+|+|+|+.+++.+++|++.+|+. +++++++|+.+..+   ++.||+|+
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vl  335 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEIIGEEVADKVL  335 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSSCSSCEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhhccCCCCEEE
Confidence            567889999999999999999985  3 79999999999999999999999984 79999999988752   25799999


Q ss_pred             EcCCCCCCcccc
Q psy15742        261 LSPPWGGPEYAR  272 (342)
Q Consensus       261 ~nPP~~~~~~~~  272 (342)
                      +|||+.+.....
T Consensus       336 ~D~Pcsg~g~~~  347 (450)
T 2yxl_A          336 LDAPCTSSGTIG  347 (450)
T ss_dssp             EECCCCCGGGTT
T ss_pred             EcCCCCCCeeec
Confidence            999998875544

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.22  E-value=3.7e-11  Score=103.36  Aligned_cols=73  Identities=15%  Similarity=0.147  Sum_probs=64.5

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~~~  268 (342)
                      +.+|||+|||+|.++..++..+.+|+|+|+|+.+++.|+++.      .+++++++|+.+++ +.++||+|+++..++..
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  115 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHM  115 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTTC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhcC
Confidence            679999999999999999999889999999999999999883      37899999999876 45789999998776654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.21  E-value=2.2e-11  Score=109.08  Aligned_cols=79  Identities=22%  Similarity=0.275  Sum_probs=69.1

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...+++ +++++++|+.+++ ++++||+|+++-..+
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~~~fD~V~~~~~l~  114 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPFTDERFHIVTCRIAAH  114 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCCCCCCCEEEEEEhhhhH
Confidence            45789999999999999999998889999999999999999999988874 7999999998875 457899999986554


Q ss_pred             C
Q psy15742        267 G  267 (342)
Q Consensus       267 ~  267 (342)
                      .
T Consensus       115 ~  115 (260)
T 1vl5_A          115 H  115 (260)
T ss_dssp             G
T ss_pred             h
Confidence            4

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.21  E-value=1.2e-11  Score=111.00  Aligned_cols=82  Identities=15%  Similarity=0.182  Sum_probs=69.8

Q ss_pred             HHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEE
Q psy15742        181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVF  260 (342)
Q Consensus       181 ~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii  260 (342)
                      +.+....+++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++.      +++++++|+.+++...+||+|+
T Consensus        42 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~fD~v~  115 (263)
T 3pfg_A           42 ALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSLGRRFSAVT  115 (263)
T ss_dssp             HHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCCSCCEEEEE
T ss_pred             HHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCccCCcCEEE
Confidence            4444555667899999999999999999998899999999999999999863      6899999999887677999999


Q ss_pred             EcC-CCCCC
Q psy15742        261 LSP-PWGGP  268 (342)
Q Consensus       261 ~nP-P~~~~  268 (342)
                      ++. .++..
T Consensus       116 ~~~~~l~~~  124 (263)
T 3pfg_A          116 CMFSSIGHL  124 (263)
T ss_dssp             ECTTGGGGS
T ss_pred             EcCchhhhc
Confidence            986 55543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.21  E-value=2.9e-11  Score=105.94  Aligned_cols=81  Identities=21%  Similarity=0.088  Sum_probs=69.1

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEEccccccC-CCCCccE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGV----SHKIQFIQGDFFALA-PSLQGDV  258 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~--~~v~gvD~s~~~l~~a~~n~~~~gl----~~~i~~~~~D~~~~~-~~~~~D~  258 (342)
                      ++++.+|||+|||+|..+..+++. +  .+|+|+|+|+.+++.|++|+..+++    .++++++++|+.... ....||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            456889999999999999999986 3  6999999999999999999988764    358999999998654 3458999


Q ss_pred             EEEcCCCCC
Q psy15742        259 VFLSPPWGG  267 (342)
Q Consensus       259 Ii~nPP~~~  267 (342)
                      |+++.|+..
T Consensus       155 i~~~~~~~~  163 (226)
T 1i1n_A          155 IHVGAAAPV  163 (226)
T ss_dssp             EEECSBBSS
T ss_pred             EEECCchHH
Confidence            999988643

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.21  E-value=5.8e-11  Score=105.88  Aligned_cols=76  Identities=17%  Similarity=0.231  Sum_probs=65.5

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++|+...   ++++++++|+.+++..  ..| .|++||||
T Consensus        29 ~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~~~~~~-~vv~nlPy  104 (244)
T 1qam_A           29 NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPKNQSY-KIFGNIPY  104 (244)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCSSCCC-EEEEECCG
T ss_pred             CCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCcccCCCe-EEEEeCCc
Confidence            35789999999999999999999999999999999999999998642   4899999999987532  244 68999999


Q ss_pred             CC
Q psy15742        266 GG  267 (342)
Q Consensus       266 ~~  267 (342)
                      ..
T Consensus       105 ~~  106 (244)
T 1qam_A          105 NI  106 (244)
T ss_dssp             GG
T ss_pred             cc
Confidence            64

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.20  E-value=4.6e-11  Score=103.25  Aligned_cols=82  Identities=18%  Similarity=0.166  Sum_probs=68.6

Q ss_pred             HHHhcCCCCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEE
Q psy15742        183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVF  260 (342)
Q Consensus       183 i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii  260 (342)
                      +...++++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++...  . ++++++++|+.+.+ +.++||+|+
T Consensus        36 l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~-~~i~~~~~d~~~~~~~~~~fD~v~  112 (215)
T 2pxx_A           36 LEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--V-PQLRWETMDVRKLDFPSASFDVVL  112 (215)
T ss_dssp             HGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--C-TTCEEEECCTTSCCSCSSCEEEEE
T ss_pred             HHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--C-CCcEEEEcchhcCCCCCCcccEEE
Confidence            334456688999999999999999998865 899999999999999999864  2 47899999998864 456899999


Q ss_pred             EcCCCCC
Q psy15742        261 LSPPWGG  267 (342)
Q Consensus       261 ~nPP~~~  267 (342)
                      ++++++.
T Consensus       113 ~~~~~~~  119 (215)
T 2pxx_A          113 EKGTLDA  119 (215)
T ss_dssp             EESHHHH
T ss_pred             ECcchhh
Confidence            9988643

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.20  E-value=1.6e-11  Score=106.44  Aligned_cols=78  Identities=17%  Similarity=0.029  Sum_probs=67.7

Q ss_pred             HHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        184 ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       184 ~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      ...++++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++       +++++.+|+.+.++.++||+|+++.
T Consensus        38 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~fD~v~~~~  110 (211)
T 3e23_A           38 LGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLDAIDAYDAVWAHA  110 (211)
T ss_dssp             HTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCCCCSCEEEEEECS
T ss_pred             HHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCCCCCcEEEEEecC
Confidence            334556889999999999999999999899999999999999999987       3568899999888778999999987


Q ss_pred             CCCCC
Q psy15742        264 PWGGP  268 (342)
Q Consensus       264 P~~~~  268 (342)
                      .+...
T Consensus       111 ~l~~~  115 (211)
T 3e23_A          111 CLLHV  115 (211)
T ss_dssp             CGGGS
T ss_pred             chhhc
Confidence            76554

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.20  E-value=3.3e-11  Score=119.33  Aligned_cols=95  Identities=22%  Similarity=0.305  Sum_probs=77.2

Q ss_pred             CHHHHHHHHHHhcC--CCCeEEeccCCCcHHHHHHHHh--------------------CCEEEEEeCCHHHHHHHHHHHH
Q psy15742        175 TPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV--------------------CQKVISIDIDPAKLRLAQHNAS  232 (342)
Q Consensus       175 ~~e~~~~~i~~~~~--~~~~vLDlgcGtG~~~~~~a~~--------------------~~~v~gvD~s~~~l~~a~~n~~  232 (342)
                      ||..+++.+...+.  ++.+|+|++||||++.+.+++.                    ...++|+|+++.+++.|+.|+.
T Consensus       153 TP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~  232 (541)
T 2ar0_A          153 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  232 (541)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH
Confidence            56666666666543  4679999999999999998764                    1379999999999999999999


Q ss_pred             HcCCCC----cEEEEEccccccC--CCCCccEEEEcCCCCCCc
Q psy15742        233 VYGVSH----KIQFIQGDFFALA--PSLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       233 ~~gl~~----~i~~~~~D~~~~~--~~~~~D~Ii~nPP~~~~~  269 (342)
                      .+|+..    ++.+.++|.+...  ...+||+|++||||++..
T Consensus       233 l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~  275 (541)
T 2ar0_A          233 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAA  275 (541)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCS
T ss_pred             HhCCCccccccCCeEeCCCcccccccccCCeEEEECCCccccc
Confidence            999853    2789999988653  345899999999999864

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.20  E-value=3e-11  Score=105.31  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=68.7

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCC----cEEEEEccccccC-CCCCccEEEE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSH----KIQFIQGDFFALA-PSLQGDVVFL  261 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~----~i~~~~~D~~~~~-~~~~~D~Ii~  261 (342)
                      ++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.|++++..+++++    +++++++|+.... +..+||+|++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  108 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATV  108 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEE
Confidence            57799999999999999999875  699999999999999999998887754    7999999996654 3468999999


Q ss_pred             cCCCCCC
Q psy15742        262 SPPWGGP  268 (342)
Q Consensus       262 nPP~~~~  268 (342)
                      +-.+...
T Consensus       109 ~~~l~~~  115 (219)
T 3jwg_A          109 IEVIEHL  115 (219)
T ss_dssp             ESCGGGC
T ss_pred             HHHHHhC
Confidence            7766554

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.19  E-value=7.8e-11  Score=111.67  Aligned_cols=76  Identities=18%  Similarity=0.137  Sum_probs=69.5

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  264 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP  264 (342)
                      .++.+|||+|||+|.+++.+++.+. +|+|+|+| .+++.|+++++.+++.++++++++|+.++....+||+|++++.
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~  138 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWM  138 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCC
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcCh
Confidence            4578999999999999999999865 99999999 9999999999999998789999999998865578999999984

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.19  E-value=9e-11  Score=102.15  Aligned_cols=80  Identities=19%  Similarity=0.174  Sum_probs=68.6

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCC----cEEEEEccccccC-CCCCccEEEE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSH----KIQFIQGDFFALA-PSLQGDVVFL  261 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~----~i~~~~~D~~~~~-~~~~~D~Ii~  261 (342)
                      ++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.|++++..+++.+    +++++++|+.... +.++||+|++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  108 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV  108 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence            57799999999999999999874  699999999999999999998888754    7999999986554 3358999999


Q ss_pred             cCCCCCC
Q psy15742        262 SPPWGGP  268 (342)
Q Consensus       262 nPP~~~~  268 (342)
                      +-.+...
T Consensus       109 ~~~l~~~  115 (217)
T 3jwh_A          109 IEVIEHL  115 (217)
T ss_dssp             ESCGGGC
T ss_pred             HHHHHcC
Confidence            8776544

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.19  E-value=2.6e-11  Score=106.71  Aligned_cols=79  Identities=15%  Similarity=0.111  Sum_probs=69.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||+|.++..+++.  +.+++|+|+|+.+++.|++++...+   +++++++|+.+.+..++||+|+++.++
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~~fD~v~~~~~l  119 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFEEKYDMVVSALSI  119 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCCSCEEEEEEESCG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCCCCceEEEEeCcc
Confidence            35789999999999999999998  7899999999999999999986554   799999999998766899999999877


Q ss_pred             CCCc
Q psy15742        266 GGPE  269 (342)
Q Consensus       266 ~~~~  269 (342)
                      +...
T Consensus       120 ~~~~  123 (234)
T 3dtn_A          120 HHLE  123 (234)
T ss_dssp             GGSC
T ss_pred             ccCC
Confidence            6653

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.19  E-value=1e-10  Score=109.35  Aligned_cols=78  Identities=23%  Similarity=0.240  Sum_probs=68.9

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcC-C
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP-P  264 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nP-P  264 (342)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+ +++.|+++++.+|+.++++++++|+.++. +..+||+|++++ +
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  141 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  141 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCch
Confidence            457899999999999999999885 5999999996 99999999999999779999999999875 346899999998 4


Q ss_pred             CC
Q psy15742        265 WG  266 (342)
Q Consensus       265 ~~  266 (342)
                      |.
T Consensus       142 ~~  143 (340)
T 2fyt_A          142 YF  143 (340)
T ss_dssp             TT
T ss_pred             hh
Confidence            43

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.19  E-value=8.4e-11  Score=114.81  Aligned_cols=76  Identities=18%  Similarity=0.251  Sum_probs=68.7

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      ++.+|||+|||+|.+++.+++. +.+|+|+|+|+ +++.|+++++.+|+.++++++++|+.++....+||+|+++||.
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~  234 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMG  234 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCH
T ss_pred             CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCch
Confidence            5789999999999999999987 46999999998 9999999999999977999999999986544689999999983

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.19  E-value=4.5e-11  Score=106.88  Aligned_cols=73  Identities=16%  Similarity=0.122  Sum_probs=66.0

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----CCCccEEEEc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFLS  262 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----~~~~D~Ii~n  262 (342)
                      ++.+|||+|||+|..++.+|..  +.+|+|+|+|+.+++.|++|++.+|+. +++++++|+.++..    ..+||+|+++
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccccCCCceEEEEC
Confidence            4789999999999999999986  689999999999999999999999995 69999999998764    3689999995

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.18  E-value=2.8e-11  Score=107.16  Aligned_cols=80  Identities=25%  Similarity=0.341  Sum_probs=70.4

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      ++++.+|||+|||+|.++..++..+.+|+|+|+|+.+++.|++++..++++ +++++++|+.+++ ++++||+|+++-..
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~~~l   97 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFPDDSFDIITCRYAA   97 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCCCCCcEEEEEECCch
Confidence            456889999999999999999998889999999999999999999998884 7999999998875 45689999998554


Q ss_pred             CC
Q psy15742        266 GG  267 (342)
Q Consensus       266 ~~  267 (342)
                      +.
T Consensus        98 ~~   99 (239)
T 1xxl_A           98 HH   99 (239)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.18  E-value=7.6e-11  Score=104.11  Aligned_cols=74  Identities=12%  Similarity=0.069  Sum_probs=64.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++...     +++++++|+.+..++++||+|++.--.+.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  115 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQLPRRYDNIVLTHVLEH  115 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCCSSCEEEEEEESCGGG
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcCcCCcccEEEEhhHHHh
Confidence            467899999999999999999888999999999999999998642     68999999998876778999999755443

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.18  E-value=2.4e-11  Score=106.81  Aligned_cols=80  Identities=15%  Similarity=0.150  Sum_probs=68.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-C-------CEEEEEeCCHHHHHHHHHHHHHcC-----CCCcEEEEEccccccCCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-C-------QKVISIDIDPAKLRLAQHNASVYG-----VSHKIQFIQGDFFALAPS  253 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~-------~~v~gvD~s~~~l~~a~~n~~~~g-----l~~~i~~~~~D~~~~~~~  253 (342)
                      ++++.+|||+|||+|.++..+++. +       .+|+|+|+++.+++.|++|+..++     . ++++++.+|+.+..+.
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~  160 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS-GQLLIVEGDGRKGYPP  160 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH-TSEEEEESCGGGCCGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCC-CceEEEECCcccCCCc
Confidence            456889999999999999999985 4       499999999999999999998776     3 4799999999874433


Q ss_pred             -CCccEEEEcCCCCC
Q psy15742        254 -LQGDVVFLSPPWGG  267 (342)
Q Consensus       254 -~~~D~Ii~nPP~~~  267 (342)
                       .+||+|+++.+...
T Consensus       161 ~~~fD~I~~~~~~~~  175 (227)
T 1r18_A          161 NAPYNAIHVGAAAPD  175 (227)
T ss_dssp             GCSEEEEEECSCBSS
T ss_pred             CCCccEEEECCchHH
Confidence             68999999988654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.18  E-value=3.1e-11  Score=100.85  Aligned_cols=133  Identities=14%  Similarity=0.118  Sum_probs=87.6

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      .+++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++     . ++++++.+| .. .+.++||+|+++..++
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~-~~v~~~~~d-~~-~~~~~~D~v~~~~~l~   86 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK-----F-DSVITLSDP-KE-IPDNSVDFILFANSFH   86 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH-----C-TTSEEESSG-GG-SCTTCEEEEEEESCST
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh-----C-CCcEEEeCC-CC-CCCCceEEEEEccchh
Confidence            35677999999999999999998866999999999999999998     2 478999999 33 3456899999988877


Q ss_pred             CCcccc-ccccccccCcCCCCchh-hhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEEecccC
Q psy15742        267 GPEYAR-SSFSIDNIFPEQGGGRR-LFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFISLTGRQ  331 (342)
Q Consensus       267 ~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~~~  331 (342)
                      ...... ....+.+++++  ||.. +.+........ .-.....+...++..++. |+++..+....
T Consensus        87 ~~~~~~~~l~~~~~~L~p--gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-Gf~~~~~~~~~  149 (170)
T 3i9f_A           87 DMDDKQHVISEVKRILKD--DGRVIIIDWRKENTGI-GPPLSIRMDEKDYMGWFS-NFVVEKRFNPT  149 (170)
T ss_dssp             TCSCHHHHHHHHHHHEEE--EEEEEEEEECSSCCSS-SSCGGGCCCHHHHHHHTT-TEEEEEEECSS
T ss_pred             cccCHHHHHHHHHHhcCC--CCEEEEEEcCcccccc-CchHhhhcCHHHHHHHHh-CcEEEEccCCC
Confidence            653211 11222333333  2322 22211111100 001122345677888877 99988776654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.18  E-value=1.8e-10  Score=102.43  Aligned_cols=73  Identities=30%  Similarity=0.447  Sum_probs=66.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  262 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n  262 (342)
                      +++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...+.  +++++++|+.+.+...+||+|++.
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~v~~~  112 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFKNEFDAVTMF  112 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCCSCEEEEEEC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccCCCccEEEEc
Confidence            3567999999999999999999999999999999999999999988876  799999999987656789999974

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.17  E-value=4.2e-11  Score=105.07  Aligned_cols=78  Identities=14%  Similarity=0.053  Sum_probs=68.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----C---CCcc
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----S---LQGD  257 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----~---~~~D  257 (342)
                      .++.+|||+|||+|..++.+++.   +.+|+++|+|+.+++.|++|++.+|+.++++++++|+.+..+    .   .+||
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  147 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  147 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence            45679999999999999999985   679999999999999999999999987789999999976532    1   6899


Q ss_pred             EEEEcCCC
Q psy15742        258 VVFLSPPW  265 (342)
Q Consensus       258 ~Ii~nPP~  265 (342)
                      +|++|+|.
T Consensus       148 ~v~~d~~~  155 (229)
T 2avd_A          148 VAVVDADK  155 (229)
T ss_dssp             EEEECSCS
T ss_pred             EEEECCCH
Confidence            99999983

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.17  E-value=1.6e-10  Score=102.03  Aligned_cols=82  Identities=20%  Similarity=0.233  Sum_probs=71.0

Q ss_pred             HHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccE
Q psy15742        179 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDV  258 (342)
Q Consensus       179 ~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~  258 (342)
                      ..+.+...++++.+|||+|||+|.++..+++. .+++|+|+|+.+++.|++++..++.  +++++++|+.+.+...+||+
T Consensus        23 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~   99 (243)
T 3d2l_A           23 WVAWVLEQVEPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNR--HVDFWVQDMRELELPEPVDA   99 (243)
T ss_dssp             HHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCGGGCCCSSCEEE
T ss_pred             HHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCC--ceEEEEcChhhcCCCCCcCE
Confidence            34455556677889999999999999999988 8999999999999999999988774  79999999998765578999


Q ss_pred             EEEcC
Q psy15742        259 VFLSP  263 (342)
Q Consensus       259 Ii~nP  263 (342)
                      |++++
T Consensus       100 v~~~~  104 (243)
T 3d2l_A          100 ITILC  104 (243)
T ss_dssp             EEECT
T ss_pred             EEEeC
Confidence            99975

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.17  E-value=8e-11  Score=103.23  Aligned_cols=81  Identities=15%  Similarity=0.101  Sum_probs=69.5

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCC-------EEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEEccccccC----
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQ-------KVISIDIDPAKLRLAQHNASVYGV----SHKIQFIQGDFFALA----  251 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~-------~v~gvD~s~~~l~~a~~n~~~~gl----~~~i~~~~~D~~~~~----  251 (342)
                      ++++.+|||+|||+|.++..+++...       +|+|+|+|+.+++.|++|+..+++    .++++++.+|+.+..    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            45688999999999999999998753       999999999999999999998873    358999999998753    


Q ss_pred             -CCCCccEEEEcCCCCC
Q psy15742        252 -PSLQGDVVFLSPPWGG  267 (342)
Q Consensus       252 -~~~~~D~Ii~nPP~~~  267 (342)
                       ...+||+|+++++...
T Consensus       158 ~~~~~fD~I~~~~~~~~  174 (227)
T 2pbf_A          158 KELGLFDAIHVGASASE  174 (227)
T ss_dssp             HHHCCEEEEEECSBBSS
T ss_pred             ccCCCcCEEEECCchHH
Confidence             3458999999988653

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.17  E-value=1.1e-10  Score=102.39  Aligned_cols=72  Identities=17%  Similarity=0.203  Sum_probs=62.4

Q ss_pred             hcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--C-CCCccEEEEc
Q psy15742        186 RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--P-SLQGDVVFLS  262 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~-~~~~D~Ii~n  262 (342)
                      ..+++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++.      .+++++++|+.+..  + +++||+|+++
T Consensus        45 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~~fD~v~~~  118 (226)
T 3m33_A           45 LLTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANA------PHADVYEWNGKGELPAGLGAPFGLIVSR  118 (226)
T ss_dssp             HCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHC------TTSEEEECCSCSSCCTTCCCCEEEEEEE
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhC------CCceEEEcchhhccCCcCCCCEEEEEeC
Confidence            3567889999999999999999999899999999999999999982      37899999996533  2 5689999998


Q ss_pred             C
Q psy15742        263 P  263 (342)
Q Consensus       263 P  263 (342)
                      +
T Consensus       119 ~  119 (226)
T 3m33_A          119 R  119 (226)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.17  E-value=8.1e-11  Score=102.06  Aligned_cols=76  Identities=21%  Similarity=0.267  Sum_probs=66.9

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~nP  263 (342)
                      ++.+|||+|||+|..++.+++.   +.+|+++|+|+.+++.|++|++..++.++++++++|+.+..+  .+ ||+|++|.
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~  134 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC  134 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence            4679999999999999999987   679999999999999999999999987689999999987532  34 99999996


Q ss_pred             CC
Q psy15742        264 PW  265 (342)
Q Consensus       264 P~  265 (342)
                      +.
T Consensus       135 ~~  136 (210)
T 3c3p_A          135 DV  136 (210)
T ss_dssp             TT
T ss_pred             Ch
Confidence            63

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.17  E-value=1e-10  Score=103.73  Aligned_cols=76  Identities=22%  Similarity=0.184  Sum_probs=68.1

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--------CCCcc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--------SLQGD  257 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--------~~~~D  257 (342)
                      ++.+|||+|||+|..++.+++.   +.+++++|+|+.+++.|++|++..|+.++++++.+|+.+..+        .++||
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  149 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD  149 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence            4679999999999999999986   689999999999999999999999997789999999987532        46899


Q ss_pred             EEEEcCC
Q psy15742        258 VVFLSPP  264 (342)
Q Consensus       258 ~Ii~nPP  264 (342)
                      +|++|.+
T Consensus       150 ~I~~d~~  156 (237)
T 3c3y_A          150 FGFVDAD  156 (237)
T ss_dssp             EEEECSC
T ss_pred             EEEECCc
Confidence            9999976

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.17  E-value=7.4e-11  Score=102.45  Aligned_cols=77  Identities=17%  Similarity=0.245  Sum_probs=68.5

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~  268 (342)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...+   +++++++|+.+..+.++||+|+++..++..
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~  127 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFSTAELFDLIVVAEVLYYL  127 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCCCSCCEEEEEEESCGGGS
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCCCCCCccEEEEccHHHhC
Confidence            46799999999999999999988899999999999999999987543   799999999998877899999998766544

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.17  E-value=1.6e-10  Score=101.46  Aligned_cols=78  Identities=23%  Similarity=0.171  Sum_probs=68.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++..++   +++++++|+.+.. ..++||+|+++.++.
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~fD~v~~~~~~~  145 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEEKPYDRVVVWATAP  145 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccCCCccEEEECCcHH
Confidence            457899999999999999999988999999999999999999998765   7999999998743 356899999998876


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       146 ~~  147 (231)
T 1vbf_A          146 TL  147 (231)
T ss_dssp             SC
T ss_pred             HH
Confidence            43

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.16  E-value=4.8e-11  Score=105.85  Aligned_cols=74  Identities=11%  Similarity=0.107  Sum_probs=65.9

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----CCCccEEEEc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFLS  262 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----~~~~D~Ii~n  262 (342)
                      ++.+|||+|||+|..++.++..  +.+|+|+|+|+.+++.|++|++.+|++ +++++++|+.++..    ..+||+|+++
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEEEEe
Confidence            4779999999999999999963  789999999999999999999999985 69999999988752    4689999996


Q ss_pred             C
Q psy15742        263 P  263 (342)
Q Consensus       263 P  263 (342)
                      .
T Consensus       149 ~  149 (240)
T 1xdz_A          149 A  149 (240)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.16  E-value=1e-10  Score=112.83  Aligned_cols=84  Identities=25%  Similarity=0.316  Sum_probs=73.3

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFL  261 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~  261 (342)
                      ..++.+|||+|||+|+.+..++...  .+|+|+|+|+.+++.+++|++.+|+  +++++++|+.+..   +...||+|++
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~  321 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGEQQFDRILL  321 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhcccCCCCEEEE
Confidence            4578899999999999999999873  6999999999999999999999998  5799999998764   3468999999


Q ss_pred             cCCCCCCcccc
Q psy15742        262 SPPWGGPEYAR  272 (342)
Q Consensus       262 nPP~~~~~~~~  272 (342)
                      |||+.+.....
T Consensus       322 D~Pcsg~g~~~  332 (429)
T 1sqg_A          322 DAPCSATGVIR  332 (429)
T ss_dssp             ECCCCCGGGTT
T ss_pred             eCCCCcccccC
Confidence            99999865443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.16  E-value=1e-10  Score=103.11  Aligned_cols=79  Identities=22%  Similarity=0.328  Sum_probs=70.2

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----CCCccEEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFL  261 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----~~~~D~Ii~  261 (342)
                      .++.+|||+|||+|..+..+++.  +.+|+|+|+|+.+++.|++|+..+|+.++++++.+|+.+..+    .++||+|++
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  132 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI  132 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence            35779999999999999999987  689999999999999999999999987689999999987532    468999999


Q ss_pred             cCCCC
Q psy15742        262 SPPWG  266 (342)
Q Consensus       262 nPP~~  266 (342)
                      |+|..
T Consensus       133 ~~~~~  137 (233)
T 2gpy_A          133 DAAKG  137 (233)
T ss_dssp             EGGGS
T ss_pred             CCCHH
Confidence            98854

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.16  E-value=1.2e-10  Score=102.02  Aligned_cols=85  Identities=22%  Similarity=0.285  Sum_probs=73.1

Q ss_pred             HHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC----CcEEEEEccccccC-CCCCccE
Q psy15742        184 ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS----HKIQFIQGDFFALA-PSLQGDV  258 (342)
Q Consensus       184 ~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~----~~i~~~~~D~~~~~-~~~~~D~  258 (342)
                      ...++++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...++.    ++++++++|+.+.+ +..+||+
T Consensus        25 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  104 (235)
T 3sm3_A           25 HNYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDF  104 (235)
T ss_dssp             HHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEE
T ss_pred             HHhCCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeE
Confidence            334567889999999999999999999999999999999999999999887762    36899999998875 4568999


Q ss_pred             EEEcCCCCCC
Q psy15742        259 VFLSPPWGGP  268 (342)
Q Consensus       259 Ii~nPP~~~~  268 (342)
                      |+++..+...
T Consensus       105 v~~~~~l~~~  114 (235)
T 3sm3_A          105 AVMQAFLTSV  114 (235)
T ss_dssp             EEEESCGGGC
T ss_pred             EEEcchhhcC
Confidence            9998776654

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.16  E-value=6.9e-11  Score=107.52  Aligned_cols=79  Identities=16%  Similarity=0.127  Sum_probs=69.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  264 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP  264 (342)
                      .++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++++...+.  +++++++|+.+++..++||+|+++..
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~v~~~~~   98 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELNDKYDIAICHAF   98 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCSSCEEEEEEESC
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCcCCCeeEEEECCh
Confidence            46789999999999999999987   58999999999999999999987765  89999999998876678999999876


Q ss_pred             CCCC
Q psy15742        265 WGGP  268 (342)
Q Consensus       265 ~~~~  268 (342)
                      .+..
T Consensus        99 l~~~  102 (284)
T 3gu3_A           99 LLHM  102 (284)
T ss_dssp             GGGC
T ss_pred             hhcC
Confidence            5543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.15  E-value=1.4e-10  Score=107.92  Aligned_cols=78  Identities=22%  Similarity=0.285  Sum_probs=69.3

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|+| .+++.|+++++.+++.++++++++|+.++. +..+||+|+++++..
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~  116 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred             CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence            57799999999999999999885 599999999 699999999999999878999999999875 336899999998854


Q ss_pred             C
Q psy15742        267 G  267 (342)
Q Consensus       267 ~  267 (342)
                      .
T Consensus       117 ~  117 (328)
T 1g6q_1          117 F  117 (328)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.15  E-value=3.6e-11  Score=107.46  Aligned_cols=80  Identities=21%  Similarity=0.221  Sum_probs=68.4

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      ++++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++ ..+ ..+++++++|+.+++ ++++||+|+++-.+
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  114 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGV-DRKVQVVQADARAIPLPDESVHGVIVVHLW  114 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTS-CTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hcc-CCceEEEEcccccCCCCCCCeeEEEECCch
Confidence            456789999999999999999988899999999999999999998 222 358999999998875 45689999998776


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      +..
T Consensus       115 ~~~  117 (263)
T 2yqz_A          115 HLV  117 (263)
T ss_dssp             GGC
T ss_pred             hhc
Confidence            554

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.14  E-value=1.4e-10  Score=105.01  Aligned_cols=78  Identities=19%  Similarity=0.198  Sum_probs=68.9

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHc-C-CCCcEEEEEccccccC-CCCCccEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVY-G-VSHKIQFIQGDFFALA-PSLQGDVVF  260 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~-g-l~~~i~~~~~D~~~~~-~~~~~D~Ii  260 (342)
                      +.++.+|||+|||+|.++..+++.   +.+|+++|+|+.+++.|++|++.+ | +.++++++++|+.+.. +...||+|+
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~  176 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAV  176 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEE
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEE
Confidence            456889999999999999999985   689999999999999999999888 5 4468999999998875 456899999


Q ss_pred             EcCC
Q psy15742        261 LSPP  264 (342)
Q Consensus       261 ~nPP  264 (342)
                      +|+|
T Consensus       177 ~~~~  180 (280)
T 1i9g_A          177 LDML  180 (280)
T ss_dssp             EESS
T ss_pred             ECCc
Confidence            9987

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.14  E-value=1.4e-10  Score=102.36  Aligned_cols=78  Identities=18%  Similarity=0.154  Sum_probs=69.5

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC-CCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP-PWGG  267 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP-P~~~  267 (342)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++...+.  +++++++|+.+.+...+||+|+++. .++.
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCccCCceEEEEcCccccc
Confidence            578999999999999999999989999999999999999999988876  7899999999876557899999987 6554


Q ss_pred             C
Q psy15742        268 P  268 (342)
Q Consensus       268 ~  268 (342)
                      .
T Consensus       115 ~  115 (246)
T 1y8c_A          115 I  115 (246)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.14  E-value=7e-11  Score=106.67  Aligned_cols=80  Identities=26%  Similarity=0.437  Sum_probs=71.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  264 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP  264 (342)
                      +++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.|++++..++++ +++++.+|+.+.+ +.++||+|+++..
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCCCCCCeeEEEEech
Confidence            56889999999999999999987  789999999999999999999999884 7999999999876 4578999999877


Q ss_pred             CCCC
Q psy15742        265 WGGP  268 (342)
Q Consensus       265 ~~~~  268 (342)
                      +...
T Consensus       115 l~~~  118 (276)
T 3mgg_A          115 LEHL  118 (276)
T ss_dssp             GGGC
T ss_pred             hhhc
Confidence            6554

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.14  E-value=1.1e-10  Score=116.38  Aligned_cols=83  Identities=13%  Similarity=0.082  Sum_probs=70.8

Q ss_pred             HHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEE
Q psy15742        184 ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVF  260 (342)
Q Consensus       184 ~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii  260 (342)
                      ...+..+.+|||+|||+|.++..+|+.|..|+|||.++.+++.|+..+...|.. ++++.++|+.++.   +.++||+|+
T Consensus        61 ~~~~~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~  139 (569)
T 4azs_A           61 SRALGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAI  139 (569)
T ss_dssp             HHHHTSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEE
T ss_pred             HhhcCCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEE
Confidence            334456779999999999999999999999999999999999999999888742 7999999998873   456899999


Q ss_pred             EcCCCCC
Q psy15742        261 LSPPWGG  267 (342)
Q Consensus       261 ~nPP~~~  267 (342)
                      +--.+.+
T Consensus       140 ~~e~~eh  146 (569)
T 4azs_A          140 GLSVFHH  146 (569)
T ss_dssp             EESCHHH
T ss_pred             ECcchhc
Confidence            9655544

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.14  E-value=2.6e-11  Score=107.97  Aligned_cols=76  Identities=18%  Similarity=0.140  Sum_probs=68.6

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-------CCCccE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-------SLQGDV  258 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-------~~~~D~  258 (342)
                      ++.+|||+|||+|..++.+|+.   +.+|+|+|+|+.+++.|++|++.+|+.++++++++|+.+.++       .++||+
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~  139 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF  139 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence            4679999999999999999984   579999999999999999999999997799999999987643       468999


Q ss_pred             EEEcCC
Q psy15742        259 VFLSPP  264 (342)
Q Consensus       259 Ii~nPP  264 (342)
                      |++|.+
T Consensus       140 V~~d~~  145 (242)
T 3r3h_A          140 IFIDAD  145 (242)
T ss_dssp             EEEESC
T ss_pred             EEEcCC
Confidence            999987

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.13  E-value=1.8e-10  Score=100.28  Aligned_cols=75  Identities=15%  Similarity=0.173  Sum_probs=66.4

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~  268 (342)
                      ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|++++.     .+++++++|+.+++..++||+|+++..++..
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~  119 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVPTSIDTIVSTYAFHHL  119 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCCSCCSEEEEESCGGGS
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCCCCeEEEEECcchhcC
Confidence            47799999999999999999999999999999999999999875     3789999999987654799999998776554

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.13  E-value=8.1e-11  Score=106.89  Aligned_cols=76  Identities=11%  Similarity=0.101  Sum_probs=64.0

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCE----EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC-------Cc
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQK----VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-------QG  256 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~----v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~-------~~  256 (342)
                      .++.+|||+|||+|.++..+++.+..    |+|+|+|+.+++.++++.     .++++++++|+.++....       ..
T Consensus        41 ~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~~~~~~~~~~~~~  115 (279)
T 3uzu_A           41 ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFDFGSIARPGDEPS  115 (279)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCCGGGGSCSSSSCC
T ss_pred             CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCChhHhcccccCCc
Confidence            45789999999999999999998766    999999999999999993     248999999999875221       24


Q ss_pred             cEEEEcCCCCCC
Q psy15742        257 DVVFLSPPWGGP  268 (342)
Q Consensus       257 D~Ii~nPP~~~~  268 (342)
                      +.|++||||...
T Consensus       116 ~~vv~NlPY~is  127 (279)
T 3uzu_A          116 LRIIGNLPYNIS  127 (279)
T ss_dssp             EEEEEECCHHHH
T ss_pred             eEEEEccCcccc
Confidence            579999998754

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.13  E-value=7e-11  Score=102.41  Aligned_cols=77  Identities=22%  Similarity=0.288  Sum_probs=66.8

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      .+++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++    .+. .+++++++|+.+..+.++||+|+++-.++
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~~~~~~D~v~~~~~l~  118 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWTPDRQWDAVFFAHWLA  118 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCCCSSCEEEEEEESCGG
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCCCCCceeEEEEechhh
Confidence            3457799999999999999999999999999999999999988    454 47999999999887677999999986655


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       119 ~~  120 (218)
T 3ou2_A          119 HV  120 (218)
T ss_dssp             GS
T ss_pred             cC
Confidence            44

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.12  E-value=8.4e-11  Score=105.65  Aligned_cols=78  Identities=9%  Similarity=-0.175  Sum_probs=59.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc-ccCCCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF-ALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~-~~~~~~~~D~Ii~nPP~~  266 (342)
                      +++.+|||+|||+|.+++.+++.+.+|+|+|+|+.|++.|++|+..+.+  +..+...+.. .....++||+|+++..++
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v--~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~  121 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCV--TIDLLDITAEIPKELAGHFDFVLNDRLIN  121 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCC--EEEECCTTSCCCGGGTTCCSEEEEESCGG
T ss_pred             CCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccc--eeeeeecccccccccCCCccEEEEhhhhH
Confidence            4588999999999999999999999999999999999999999865422  2333332320 011245899999998765


Q ss_pred             C
Q psy15742        267 G  267 (342)
Q Consensus       267 ~  267 (342)
                      .
T Consensus       122 ~  122 (261)
T 3iv6_A          122 R  122 (261)
T ss_dssp             G
T ss_pred             h
Confidence            4

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.12  E-value=4.7e-10  Score=107.61  Aligned_cols=78  Identities=22%  Similarity=0.248  Sum_probs=64.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-C-CEEEEEeCCHHHHHHH-------HHHHHHcCCC-CcEEEEEcccccc----C-C
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-C-QKVISIDIDPAKLRLA-------QHNASVYGVS-HKIQFIQGDFFAL----A-P  252 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~-~~v~gvD~s~~~l~~a-------~~n~~~~gl~-~~i~~~~~D~~~~----~-~  252 (342)
                      +++.+|||+|||+|.+++.+|+. + .+|+|+|+|+.+++.|       +.|++.+|+. ++++++++|....    . .
T Consensus       241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~  320 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  320 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc
Confidence            46889999999999999999986 4 5899999999999999       9999999953 5899999865421    0 1


Q ss_pred             CCCccEEEEcCCC
Q psy15742        253 SLQGDVVFLSPPW  265 (342)
Q Consensus       253 ~~~~D~Ii~nPP~  265 (342)
                      ...||+|+++...
T Consensus       321 ~~~FDvIvvn~~l  333 (433)
T 1u2z_A          321 IPQCDVILVNNFL  333 (433)
T ss_dssp             GGGCSEEEECCTT
T ss_pred             cCCCCEEEEeCcc
Confidence            3579999998553

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.11  E-value=9.4e-11  Score=104.41  Aligned_cols=76  Identities=25%  Similarity=0.204  Sum_probs=66.2

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++.    ..+++++++|+.+++ +.++||+|+++-.++
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  119 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAYNVVLSSLALH  119 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTCEEEEEEESCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCCeEEEEEchhhh
Confidence            578999999999999999999866 99999999999999999876    248999999998876 457899999987665


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       120 ~~  121 (253)
T 3g5l_A          120 YI  121 (253)
T ss_dssp             GC
T ss_pred             hh
Confidence            44

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.11  E-value=1.9e-10  Score=105.20  Aligned_cols=74  Identities=20%  Similarity=0.253  Sum_probs=65.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEEccccccCCCCCccEEEEc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS--HKIQFIQGDFFALAPSLQGDVVFLS  262 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~--~~i~~~~~D~~~~~~~~~~D~Ii~n  262 (342)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...++.  .+++++++|+.+++...+||+|++.
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~  157 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVIS  157 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEEC
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEEC
Confidence            3559999999999999999999999999999999999999999877642  4799999999998767799999864

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.11  E-value=3.8e-10  Score=95.68  Aligned_cols=126  Identities=13%  Similarity=0.107  Sum_probs=86.1

Q ss_pred             hcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCC
Q psy15742        186 RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  264 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP  264 (342)
                      .++++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++..      +++++++|+.+.+ +.++||+|+++|+
T Consensus        43 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~~~D~i~~~~~  116 (195)
T 3cgg_A           43 MAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQISETDFDLIVSAGN  116 (195)
T ss_dssp             HSCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTSCCCCCCEEEEEECCC
T ss_pred             hccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCC------CCcEEEcccccCCCCCCceeEEEECCc
Confidence            35678899999999999999999988999999999999999999863      5889999998864 4568999999966


Q ss_pred             CCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec----CCCCCHHHHHHhh-CCCcEEEEecc
Q psy15742        265 WGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL----PRTSDVFEIFHDS-GKKGSFISLTG  329 (342)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~l~~~~-~~~~~i~~i~~  329 (342)
                      ....  .. ..+.         ...+..+.+.+.+++.+++    ........+...+ ..|+++..+..
T Consensus       117 ~~~~--~~-~~~~---------~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  174 (195)
T 3cgg_A          117 VMGF--LA-EDGR---------EPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFE  174 (195)
T ss_dssp             CGGG--SC-HHHH---------HHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEES
T ss_pred             HHhh--cC-hHHH---------HHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeec
Confidence            3221  00 0000         1123334444555554444    2223455555443 34778776643

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.10  E-value=3e-10  Score=101.52  Aligned_cols=78  Identities=21%  Similarity=0.223  Sum_probs=68.2

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      +++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...   ++++++++|+.+.+ +.++||+|+++..+
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  130 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFPENNFDLIYSRDAI  130 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCCTTCEEEEEEESCG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCCCCcEEEEeHHHHH
Confidence            46789999999999999999997 899999999999999999987654   48999999998875 45789999998776


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      +..
T Consensus       131 ~~~  133 (266)
T 3ujc_A          131 LAL  133 (266)
T ss_dssp             GGS
T ss_pred             Hhc
Confidence            654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.10  E-value=1.9e-10  Score=107.25  Aligned_cols=78  Identities=24%  Similarity=0.340  Sum_probs=64.9

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHHHHcC----------CCCcEEEEEccccccC--
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYG----------VSHKIQFIQGDFFALA--  251 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~--~~v~gvD~s~~~l~~a~~n~~~~g----------l~~~i~~~~~D~~~~~--  251 (342)
                      +.++.+|||+|||+|.++..+++. +  .+|+|+|+++.+++.|++|+...+          ..++++++.+|+.+..  
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~  182 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  182 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence            457889999999999999999986 4  899999999999999999998643          2358999999998863  


Q ss_pred             -CCCCccEEEEcCC
Q psy15742        252 -PSLQGDVVFLSPP  264 (342)
Q Consensus       252 -~~~~~D~Ii~nPP  264 (342)
                       +.+.||+|++|+|
T Consensus       183 ~~~~~fD~V~~~~~  196 (336)
T 2b25_A          183 IKSLTFDAVALDML  196 (336)
T ss_dssp             -----EEEEEECSS
T ss_pred             cCCCCeeEEEECCC
Confidence             3457999999987

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.09  E-value=3.5e-10  Score=102.87  Aligned_cols=81  Identities=21%  Similarity=0.241  Sum_probs=70.2

Q ss_pred             hcCCCCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEEc
Q psy15742        186 RCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLS  262 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~n  262 (342)
                      .++++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++...++..+++++++|+.+.+  +.++||+|+++
T Consensus        61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  140 (298)
T 1ri5_A           61 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  140 (298)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence            356788999999999999999888754 999999999999999999998887668999999998764  35689999998


Q ss_pred             CCCC
Q psy15742        263 PPWG  266 (342)
Q Consensus       263 PP~~  266 (342)
                      -..+
T Consensus       141 ~~l~  144 (298)
T 1ri5_A          141 FSFH  144 (298)
T ss_dssp             SCGG
T ss_pred             chhh
Confidence            6553

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.09  E-value=2.2e-10  Score=104.79  Aligned_cols=76  Identities=22%  Similarity=0.330  Sum_probs=62.3

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-----------------------------
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS-----------------------------  237 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~-----------------------------  237 (342)
                      ++.+|||+|||+|.+++.+++.  +.+|+|+|+|+.+++.|++++...+..                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            3789999999999999999997  789999999999999999998765532                             


Q ss_pred             ----------------------------CcEEEEEccccccC------CCCCccEEEEcCC
Q psy15742        238 ----------------------------HKIQFIQGDFFALA------PSLQGDVVFLSPP  264 (342)
Q Consensus       238 ----------------------------~~i~~~~~D~~~~~------~~~~~D~Ii~nPP  264 (342)
                                                  ++++|+++|+....      ....||+|++.-.
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~v  186 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSL  186 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESC
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChH
Confidence                                        58999999998654      4568999999655

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.09  E-value=2e-10  Score=101.71  Aligned_cols=78  Identities=18%  Similarity=0.158  Sum_probs=66.1

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nPP~~  266 (342)
                      ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+. .+++++++|+.+++. .++||+|+++-.++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC-ceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            4789999999999999998887 56999999999999999999987653 478999999988763 44899999985544


Q ss_pred             C
Q psy15742        267 G  267 (342)
Q Consensus       267 ~  267 (342)
                      .
T Consensus       158 ~  158 (241)
T 2ex4_A          158 H  158 (241)
T ss_dssp             G
T ss_pred             h
Confidence            3

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.09  E-value=1.4e-10  Score=103.60  Aligned_cols=76  Identities=14%  Similarity=0.142  Sum_probs=63.5

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCC--CccEEEEcCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL--QGDVVFLSPP  264 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~--~~D~Ii~nPP  264 (342)
                      .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++ .    ..+++++++|+.++....  ....|++|||
T Consensus        30 ~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~~~v~~i~~D~~~~~~~~~~~~~~vv~NlP  104 (249)
T 3ftd_A           30 EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----DERLEVINEDASKFPFCSLGKELKVVGNLP  104 (249)
T ss_dssp             CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----CTTEEEECSCTTTCCGGGSCSSEEEEEECC
T ss_pred             CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----CCCeEEEEcchhhCChhHccCCcEEEEECc
Confidence            35789999999999999999998 58999999999999999987 2    248999999999875221  1348999999


Q ss_pred             CCCC
Q psy15742        265 WGGP  268 (342)
Q Consensus       265 ~~~~  268 (342)
                      |...
T Consensus       105 y~i~  108 (249)
T 3ftd_A          105 YNVA  108 (249)
T ss_dssp             TTTH
T ss_pred             hhcc
Confidence            9764

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.09  E-value=3.6e-10  Score=99.06  Aligned_cols=74  Identities=20%  Similarity=0.152  Sum_probs=64.1

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVF  260 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii  260 (342)
                      .++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.+++|++.+   .+++++++|+.+..    ...+||+|+
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v~  148 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDVIF  148 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCceEEE
Confidence            45789999999999999999976   379999999999999999999765   48999999998732    234799999


Q ss_pred             EcCC
Q psy15742        261 LSPP  264 (342)
Q Consensus       261 ~nPP  264 (342)
                      +|+|
T Consensus       149 ~~~~  152 (227)
T 1g8a_A          149 EDVA  152 (227)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9998

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.09  E-value=3.1e-10  Score=100.97  Aligned_cols=74  Identities=16%  Similarity=0.305  Sum_probs=63.5

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHc--------CCCCcEEEEEccccccC----CC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVY--------GVSHKIQFIQGDFFALA----PS  253 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~--------gl~~~i~~~~~D~~~~~----~~  253 (342)
                      +++.+|||+|||+|.+++.+|+.+  .+|+|+|+|+.+++.|++|++.+        ++ .+++++++|+.+.+    +.
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhccc
Confidence            357799999999999999999873  58999999999999999999887        77 48999999998743    35


Q ss_pred             CCccEEEEc
Q psy15742        254 LQGDVVFLS  262 (342)
Q Consensus       254 ~~~D~Ii~n  262 (342)
                      +.+|.|+++
T Consensus       127 ~~~d~v~~~  135 (246)
T 2vdv_E          127 GQLSKMFFC  135 (246)
T ss_dssp             TCEEEEEEE
T ss_pred             cccCEEEEE
Confidence            689988765

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.09  E-value=4e-10  Score=102.22  Aligned_cols=108  Identities=16%  Similarity=0.119  Sum_probs=80.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccccccC--CCCCccEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY--GV-SHKIQFIQGDFFALA--PSLQGDVVF  260 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~--gl-~~~i~~~~~D~~~~~--~~~~~D~Ii  260 (342)
                      +.+.+|||+|||+|.++..+++.  ..+|+++|+|+.+++.|++|+...  ++ .++++++.+|+.++.  ...+||+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            34679999999999999999987  479999999999999999998652  34 358999999998764  246899999


Q ss_pred             EcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecC
Q psy15742        261 LSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLP  306 (342)
Q Consensus       261 ~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  306 (342)
                      +|+|..... .      ..+.    ....+..+.+.+.+++++++.
T Consensus       154 ~d~~~~~~~-~------~~l~----~~~~~~~~~~~L~pgG~lv~~  188 (275)
T 1iy9_A          154 VDSTEPVGP-A------VNLF----TKGFYAGIAKALKEDGIFVAQ  188 (275)
T ss_dssp             ESCSSCCSC-C------CCCS----TTHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCCCCCCc-c------hhhh----HHHHHHHHHHhcCCCcEEEEE
Confidence            999863211 0      0111    112444566677777777763

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.08  E-value=7.9e-12  Score=111.48  Aligned_cols=77  Identities=19%  Similarity=0.261  Sum_probs=66.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++|+.  + .++++++++|+.+.+.  ..+| .|++||||
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~-~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py  103 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--L-NTRVTLIHQDILQFQFPNKQRY-KIVGNIPY  103 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--T-CSEEEECCSCCTTTTCCCSSEE-EEEEECCS
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--c-CCceEEEECChhhcCcccCCCc-EEEEeCCc
Confidence            357799999999999999999988999999999999999998876  2 2489999999998752  2578 89999999


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      ...
T Consensus       104 ~~~  106 (245)
T 1yub_A          104 HLS  106 (245)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            875

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=99.08  E-value=2.9e-10  Score=112.22  Aligned_cols=94  Identities=20%  Similarity=0.324  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHhcC--CCCeEEeccCCCcHHHHHHHHh---------------CCEEEEEeCCHHHHHHHHHHHHHcCC
Q psy15742        174 VTPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV---------------CQKVISIDIDPAKLRLAQHNASVYGV  236 (342)
Q Consensus       174 ~~~e~~~~~i~~~~~--~~~~vLDlgcGtG~~~~~~a~~---------------~~~v~gvD~s~~~l~~a~~n~~~~gl  236 (342)
                      .||..+++.+...+.  ++.+|+|++||||++.+.+.+.               ...++|+|+++.+...|+.|+-.+|.
T Consensus       200 yTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~  279 (530)
T 3ufb_A          200 YTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL  279 (530)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC
Confidence            378888888888764  5779999999999999988653               24699999999999999999999998


Q ss_pred             CCcEEEEEccccccC-----CCCCccEEEEcCCCCCC
Q psy15742        237 SHKIQFIQGDFFALA-----PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       237 ~~~i~~~~~D~~~~~-----~~~~~D~Ii~nPP~~~~  268 (342)
                      . ...+.++|.+..+     +..+||+|++||||+..
T Consensus       280 ~-~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~  315 (530)
T 3ufb_A          280 E-YPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGE  315 (530)
T ss_dssp             S-CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCB
T ss_pred             c-cccccccccccCchhhhcccccceEEEecCCCCcc
Confidence            4 4678889987643     22479999999999864

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.08  E-value=3.2e-10  Score=103.95  Aligned_cols=108  Identities=11%  Similarity=0.062  Sum_probs=76.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHH--cCC-CCcEEEEEccccccC--CCCCccEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASV--YGV-SHKIQFIQGDFFALA--PSLQGDVVF  260 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~--~gl-~~~i~~~~~D~~~~~--~~~~~D~Ii  260 (342)
                      +.+.+|||+|||+|.++..+++.  ..+|+++|+|+.+++.|++|+..  .++ .++++++.+|+.++.  ...+||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            44679999999999999999987  57999999999999999999865  333 358999999998764  245799999


Q ss_pred             EcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        261 LSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       261 ~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      +|+|.......      ..+.    ....+..+.+.+.+++.+++
T Consensus       169 ~d~~~~~~~~~------~~l~----~~~~l~~~~~~LkpgG~lv~  203 (296)
T 1inl_A          169 IDSTDPTAGQG------GHLF----TEEFYQACYDALKEDGVFSA  203 (296)
T ss_dssp             EEC----------------CC----SHHHHHHHHHHEEEEEEEEE
T ss_pred             EcCCCcccCch------hhhh----HHHHHHHHHHhcCCCcEEEE
Confidence            99874311100      0000    11244455666777777766

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.08  E-value=2.5e-10  Score=105.84  Aligned_cols=77  Identities=14%  Similarity=0.156  Sum_probs=65.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHH--cCC-CCcEEEEEccccccC--CCCCccEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASV--YGV-SHKIQFIQGDFFALA--PSLQGDVVF  260 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~--~gl-~~~i~~~~~D~~~~~--~~~~~D~Ii  260 (342)
                      +++.+|||+|||+|.++..+++.  +.+|+++|+|+.+++.|++|+..  +++ .++++++++|+.++.  ..++||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            45679999999999999999987  57999999999999999999876  333 358999999998764  346899999


Q ss_pred             EcCC
Q psy15742        261 LSPP  264 (342)
Q Consensus       261 ~nPP  264 (342)
                      +|++
T Consensus       195 ~d~~  198 (321)
T 2pt6_A          195 VDSS  198 (321)
T ss_dssp             EECC
T ss_pred             ECCc
Confidence            9985

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.08  E-value=3.5e-10  Score=105.32  Aligned_cols=78  Identities=17%  Similarity=0.152  Sum_probs=66.5

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccccccC---CCCCccE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY--GV-SHKIQFIQGDFFALA---PSLQGDV  258 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~--gl-~~~i~~~~~D~~~~~---~~~~~D~  258 (342)
                      .+++.+|||+|||+|.++..+++.  ..+|+++|+|+.+++.|++|+...  ++ .++++++.+|+.+++   +.++||+
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence            345789999999999999999987  579999999999999999998753  44 348999999998763   3468999


Q ss_pred             EEEcCC
Q psy15742        259 VFLSPP  264 (342)
Q Consensus       259 Ii~nPP  264 (342)
                      |++|++
T Consensus       198 Ii~d~~  203 (334)
T 1xj5_A          198 VIVDSS  203 (334)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999987

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.08  E-value=3.2e-10  Score=103.19  Aligned_cols=79  Identities=19%  Similarity=0.202  Sum_probs=66.3

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC---CcEEEEEccccccC----CCCCccEEEE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS---HKIQFIQGDFFALA----PSLQGDVVFL  261 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~---~~i~~~~~D~~~~~----~~~~~D~Ii~  261 (342)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...+..   .++.+..+|+.+.+    +.++||+|++
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~  136 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC  136 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEE
Confidence            4779999999999999999999889999999999999999988554432   36889999998865    5678999999


Q ss_pred             c-CCCCC
Q psy15742        262 S-PPWGG  267 (342)
Q Consensus       262 n-PP~~~  267 (342)
                      . ..++.
T Consensus       137 ~g~~l~~  143 (293)
T 3thr_A          137 LGNSFAH  143 (293)
T ss_dssp             CTTCGGG
T ss_pred             cChHHhh
Confidence            7 44443

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.07  E-value=7.3e-10  Score=95.43  Aligned_cols=81  Identities=17%  Similarity=0.133  Sum_probs=66.2

Q ss_pred             hcCCCCeEEeccCCCcHHHH-HHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcC
Q psy15742        186 RCKASDVVIDGFCGCGGNTI-QFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP  263 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~-~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nP  263 (342)
                      ..+++.+|||+|||+|.++. .++..+.+|+|+|+|+.+++.|++++...+.  +++++++|+.+.+ +.++||+|+++.
T Consensus        20 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~   97 (209)
T 2p8j_A           20 ESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLPFKDESMSFVYSYG   97 (209)
T ss_dssp             HSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSCCSCTTCEEEEEECS
T ss_pred             ccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhCCCCCCceeEEEEcC
Confidence            34567899999999999744 4455688999999999999999999987774  7899999998875 456899999976


Q ss_pred             CCCCC
Q psy15742        264 PWGGP  268 (342)
Q Consensus       264 P~~~~  268 (342)
                      +....
T Consensus        98 ~l~~~  102 (209)
T 2p8j_A           98 TIFHM  102 (209)
T ss_dssp             CGGGS
T ss_pred             hHHhC
Confidence            55443

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.07  E-value=2.8e-10  Score=100.47  Aligned_cols=76  Identities=21%  Similarity=0.228  Sum_probs=66.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----C--CCccE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----S--LQGDV  258 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----~--~~~D~  258 (342)
                      ++.+|||+|||+|..++.+++.   +.+|+++|+|+.+++.|++|++.+|+.++++++.+|+.+..+     +  ++||+
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~  151 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL  151 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence            4679999999999999999986   569999999999999999999999987789999999866421     2  68999


Q ss_pred             EEEcCC
Q psy15742        259 VFLSPP  264 (342)
Q Consensus       259 Ii~nPP  264 (342)
                      |++|.+
T Consensus       152 V~~d~~  157 (232)
T 3cbg_A          152 IFIDAD  157 (232)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            999976

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.07  E-value=2.1e-10  Score=103.34  Aligned_cols=83  Identities=17%  Similarity=0.101  Sum_probs=70.1

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-C--CEEEEEeCCHH------HHHHHHHHHHHcCCCCcEEEEEcc-cc--ccC-CC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPA------KLRLAQHNASVYGVSHKIQFIQGD-FF--ALA-PS  253 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~--~~v~gvD~s~~------~l~~a~~n~~~~gl~~~i~~~~~D-~~--~~~-~~  253 (342)
                      ++++.+|||+|||+|.++..+++. +  .+|+|+|+|+.      +++.|++++...++.++++++++| +.  ..+ +.
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  120 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIAD  120 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCC
Confidence            457889999999999999999987 4  89999999997      999999999988886689999998 32  322 45


Q ss_pred             CCccEEEEcCCCCCCc
Q psy15742        254 LQGDVVFLSPPWGGPE  269 (342)
Q Consensus       254 ~~~D~Ii~nPP~~~~~  269 (342)
                      ++||+|+++.+++...
T Consensus       121 ~~fD~v~~~~~l~~~~  136 (275)
T 3bkx_A          121 QHFDRVVLAHSLWYFA  136 (275)
T ss_dssp             CCCSEEEEESCGGGSS
T ss_pred             CCEEEEEEccchhhCC
Confidence            6899999998876543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.07  E-value=2.6e-10  Score=103.79  Aligned_cols=78  Identities=19%  Similarity=0.198  Sum_probs=65.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHc--CC--------CCcEEEEEccccccCC-CCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVY--GV--------SHKIQFIQGDFFALAP-SLQ  255 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~--gl--------~~~i~~~~~D~~~~~~-~~~  255 (342)
                      +++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|++|+ ..  ++        .++++++.+|+.++.+ ..+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            45679999999999999999987 569999999999999999998 43  32        3589999999877542 458


Q ss_pred             ccEEEEcCCCC
Q psy15742        256 GDVVFLSPPWG  266 (342)
Q Consensus       256 ~D~Ii~nPP~~  266 (342)
                      ||+|++|+|..
T Consensus       153 fD~Ii~d~~~~  163 (281)
T 1mjf_A          153 FDVIIADSTDP  163 (281)
T ss_dssp             EEEEEEECCCC
T ss_pred             eeEEEECCCCC
Confidence            99999999853

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.05  E-value=1.7e-10  Score=101.63  Aligned_cols=79  Identities=24%  Similarity=0.233  Sum_probs=65.6

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCC-HHHHHHH---HHHHHHcCCCCcEEEEEccccccCC--CCCccEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDID-PAKLRLA---QHNASVYGVSHKIQFIQGDFFALAP--SLQGDVV  259 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s-~~~l~~a---~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~I  259 (342)
                      +++.+|||+|||+|.++..+|+.  +.+|+|+|+| +.+++.|   ++++...+++ ++.++++|+.+++.  ...+|.|
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~~d~v~~i  101 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFELKNIADSI  101 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGGTTCEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhccCeEEEE
Confidence            45789999999999999999954  7899999999 6666666   8888888884 79999999998853  2568889


Q ss_pred             EEcCCCCC
Q psy15742        260 FLSPPWGG  267 (342)
Q Consensus       260 i~nPP~~~  267 (342)
                      .+++|+..
T Consensus       102 ~~~~~~~~  109 (225)
T 3p2e_A          102 SILFPWGT  109 (225)
T ss_dssp             EEESCCHH
T ss_pred             EEeCCCcH
Confidence            99998653

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.05  E-value=1.1e-09  Score=96.76  Aligned_cols=73  Identities=19%  Similarity=0.192  Sum_probs=62.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nP  263 (342)
                      ++++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++         ++++.+|+.+..   ++++||+|+++-
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~~  109 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMISH  109 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEES
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEECC
Confidence            45678999999999999999999888999999999999998876         678899988752   567899999976


Q ss_pred             CCCCC
Q psy15742        264 PWGGP  268 (342)
Q Consensus       264 P~~~~  268 (342)
                      .++..
T Consensus       110 ~l~~~  114 (240)
T 3dli_A          110 FVEHL  114 (240)
T ss_dssp             CGGGS
T ss_pred             chhhC
Confidence            65544

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.05  E-value=3.7e-10  Score=99.98  Aligned_cols=77  Identities=18%  Similarity=0.192  Sum_probs=67.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC------------
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP------------  252 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~------------  252 (342)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+|+.+++.|++++..+|+.++++++.+|+.+..+            
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  138 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA  138 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence            35779999999999999999987   679999999999999999999999986679999999876422            


Q ss_pred             -----C-CCccEEEEcCC
Q psy15742        253 -----S-LQGDVVFLSPP  264 (342)
Q Consensus       253 -----~-~~~D~Ii~nPP  264 (342)
                           . ++||+|++|..
T Consensus       139 ~~f~~~~~~fD~I~~~~~  156 (239)
T 2hnk_A          139 SDFAFGPSSIDLFFLDAD  156 (239)
T ss_dssp             TTTCCSTTCEEEEEECSC
T ss_pred             ccccCCCCCcCEEEEeCC
Confidence                 2 68999999854

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.05  E-value=4.4e-10  Score=103.42  Aligned_cols=79  Identities=19%  Similarity=0.161  Sum_probs=66.2

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHH--cCC-CCcEEEEEccccccC--CCCCccEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASV--YGV-SHKIQFIQGDFFALA--PSLQGDVVF  260 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~--~gl-~~~i~~~~~D~~~~~--~~~~~D~Ii  260 (342)
                      +++.+|||+|||+|.++..+++.  ..+|+++|+|+.+++.|++|+..  .++ .++++++.+|+.+++  ...+||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            45679999999999999999987  47999999999999999999875  344 358999999998753  346899999


Q ss_pred             EcCCCC
Q psy15742        261 LSPPWG  266 (342)
Q Consensus       261 ~nPP~~  266 (342)
                      +|+|..
T Consensus       174 ~d~~~~  179 (304)
T 2o07_A          174 TDSSDP  179 (304)
T ss_dssp             EECC--
T ss_pred             ECCCCC
Confidence            999853

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.05  E-value=4.7e-10  Score=99.35  Aligned_cols=75  Identities=19%  Similarity=0.232  Sum_probs=63.4

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHH------cCCCCcEEEEEccccc-c---CCCCCc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASV------YGVSHKIQFIQGDFFA-L---APSLQG  256 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~------~gl~~~i~~~~~D~~~-~---~~~~~~  256 (342)
                      ++.+|||+|||+|.+++.+|+.  +..|+|+|+|+.+++.|+++++.      .++ .+++++++|+.+ +   .+.++|
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCcCe
Confidence            4668999999999999999987  57999999999999999998764      355 489999999987 3   246789


Q ss_pred             cEEEEcCC
Q psy15742        257 DVVFLSPP  264 (342)
Q Consensus       257 D~Ii~nPP  264 (342)
                      |.|+++.|
T Consensus       125 D~v~~~~~  132 (235)
T 3ckk_A          125 TKMFFLFP  132 (235)
T ss_dssp             EEEEEESC
T ss_pred             eEEEEeCC
Confidence            99998644

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.04  E-value=7.9e-10  Score=96.18  Aligned_cols=74  Identities=8%  Similarity=0.025  Sum_probs=60.6

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc----CCCCCccEEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL----APSLQGDVVFL  261 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~----~~~~~~D~Ii~  261 (342)
                      ++|.+|||+|||+|..+..+++..  .+|+|+|+|+.+++.+.++++..   .++.++.+|+.+.    +..++||+|++
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~fD~V~~  132 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDLIYQ  132 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccccceeEEEE
Confidence            468899999999999999999863  79999999999988777766643   3789999998764    22368999999


Q ss_pred             cCC
Q psy15742        262 SPP  264 (342)
Q Consensus       262 nPP  264 (342)
                      |.+
T Consensus       133 ~~~  135 (210)
T 1nt2_A          133 DIA  135 (210)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            854

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.04  E-value=8.9e-10  Score=97.87  Aligned_cols=77  Identities=13%  Similarity=0.008  Sum_probs=66.0

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      ++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++...   .+++++++|+.+.+ +.++||+|++....+
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  169 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYDLIVIQWTAI  169 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCCCCeEEEEEcchhh
Confidence            5789999999999999999887 668999999999999999998654   47999999998875 456899999977655


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       170 ~~  171 (254)
T 1xtp_A          170 YL  171 (254)
T ss_dssp             GS
T ss_pred             hC
Confidence            44

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.04  E-value=2e-10  Score=102.39  Aligned_cols=75  Identities=19%  Similarity=0.209  Sum_probs=66.0

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||+|.++..+++.  +.+++|+|+|+.+++.|+++.      .+++++++|+.++++..+||+|+++..+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~fD~v~~~~~l  105 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL------PNTNFGKADLATWKPAQKADLLYANAVF  105 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS------TTSEEEECCTTTCCCSSCEEEEEEESCG
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------CCcEEEECChhhcCccCCcCEEEEeCch
Confidence            35779999999999999999987  889999999999999999882      3789999999988766789999998876


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      +..
T Consensus       106 ~~~  108 (259)
T 2p35_A          106 QWV  108 (259)
T ss_dssp             GGS
T ss_pred             hhC
Confidence            654

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.03  E-value=1.3e-10  Score=104.14  Aligned_cols=76  Identities=16%  Similarity=0.051  Sum_probs=62.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCE--EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC------CCccEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQK--VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS------LQGDVV  259 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~--v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~------~~~D~I  259 (342)
                      .++.+|||+|||+|.++. +++ +.+  |+|+|+|+.+++.+++++..+   ++++++++|+.++...      ...|.|
T Consensus        20 ~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~~~~~~v   94 (252)
T 1qyr_A           20 QKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAEKMGQPLRV   94 (252)
T ss_dssp             CTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHHHHTSCEEE
T ss_pred             CCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHhhcccCCceEE
Confidence            467899999999999999 654 567  999999999999999987543   3799999999986411      235799


Q ss_pred             EEcCCCCCC
Q psy15742        260 FLSPPWGGP  268 (342)
Q Consensus       260 i~nPP~~~~  268 (342)
                      ++||||...
T Consensus        95 vsNlPY~i~  103 (252)
T 1qyr_A           95 FGNLPYNIS  103 (252)
T ss_dssp             EEECCTTTH
T ss_pred             EECCCCCcc
Confidence            999999864

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.03  E-value=4.6e-10  Score=103.71  Aligned_cols=107  Identities=18%  Similarity=0.125  Sum_probs=77.1

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccccccC--CCCCccEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY--GV-SHKIQFIQGDFFALA--PSLQGDVVF  260 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~--gl-~~~i~~~~~D~~~~~--~~~~~D~Ii  260 (342)
                      +++.+|||+|||+|.++..+++.  ..+|+++|+|+.+++.|++++...  ++ .++++++.+|+.+++  ...+||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            45679999999999999999987  579999999999999999998754  44 358999999998764  356899999


Q ss_pred             EcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        261 LSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       261 ~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      +|++-.... .      ..+.    ....+..+.+.+.+++++++
T Consensus       187 ~d~~~~~~~-~------~~l~----t~~~l~~~~~~LkpgG~lv~  220 (314)
T 2b2c_A          187 TDSSDPVGP-A------ESLF----GQSYYELLRDALKEDGILSS  220 (314)
T ss_dssp             ECCC------------------------HHHHHHHHEEEEEEEEE
T ss_pred             EcCCCCCCc-c------hhhh----HHHHHHHHHhhcCCCeEEEE
Confidence            999632110 0      0111    01144455666777777766

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.03  E-value=9.4e-10  Score=96.71  Aligned_cols=75  Identities=17%  Similarity=0.246  Sum_probs=63.7

Q ss_pred             HHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEE
Q psy15742        181 QHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVF  260 (342)
Q Consensus       181 ~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii  260 (342)
                      +.+....+++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.|+++.      .+++++++|+.+.+...+||+|+
T Consensus        32 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~D~v~  105 (239)
T 3bxo_A           32 DLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRLGRKFSAVV  105 (239)
T ss_dssp             HHHHHHCTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCCSSCEEEEE
T ss_pred             HHHHHhcCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcccCCCCcEEE
Confidence            333444456789999999999999999998779999999999999999875      26899999998876666899999


Q ss_pred             E
Q psy15742        261 L  261 (342)
Q Consensus       261 ~  261 (342)
                      +
T Consensus       106 ~  106 (239)
T 3bxo_A          106 S  106 (239)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=99.02  E-value=3.5e-10  Score=114.38  Aligned_cols=80  Identities=19%  Similarity=0.218  Sum_probs=62.7

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-----CEEEEEeCCHHHHHHH--HHHHHHcCCC---CcEEEEEccccccC--CCCCc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-----QKVISIDIDPAKLRLA--QHNASVYGVS---HKIQFIQGDFFALA--PSLQG  256 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-----~~v~gvD~s~~~l~~a--~~n~~~~gl~---~~i~~~~~D~~~~~--~~~~~  256 (342)
                      ++.+|+|+|||+|++++.+++..     .+++|+|+++.+++.|  +.|+..+++.   +...+...|+....  ...+|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            47799999999999999998863     4799999999999999  8887663331   23456677776632  34589


Q ss_pred             cEEEEcCCCCCC
Q psy15742        257 DVVFLSPPWGGP  268 (342)
Q Consensus       257 D~Ii~nPP~~~~  268 (342)
                      |+|++||||+..
T Consensus       401 DVVIgNPPYg~~  412 (878)
T 3s1s_A          401 SVVVMNPPYVSG  412 (878)
T ss_dssp             EEEEECCBCCSS
T ss_pred             CEEEECCCcccc
Confidence            999999999763

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.02  E-value=5.3e-10  Score=99.17  Aligned_cols=85  Identities=14%  Similarity=0.139  Sum_probs=72.7

Q ss_pred             HHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCC
Q psy15742        178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ  255 (342)
Q Consensus       178 ~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~  255 (342)
                      .+-..+...+.+..+|||+|||+|-+++.++..  ...++++|+|+.+++.++.|+..+|+  +.++...|.....+...
T Consensus       121 ~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~--~~~~~v~D~~~~~p~~~  198 (281)
T 3lcv_B          121 EFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV--PHRTNVADLLEDRLDEP  198 (281)
T ss_dssp             HHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC--CEEEEECCTTTSCCCSC
T ss_pred             HHHHHHHhccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeecccCCCCC
Confidence            333445555666789999999999999999876  67999999999999999999999998  58999999998888889


Q ss_pred             ccEEEEcCC
Q psy15742        256 GDVVFLSPP  264 (342)
Q Consensus       256 ~D~Ii~nPP  264 (342)
                      ||+++++--
T Consensus       199 ~DvaL~lkt  207 (281)
T 3lcv_B          199 ADVTLLLKT  207 (281)
T ss_dssp             CSEEEETTC
T ss_pred             cchHHHHHH
Confidence            999999533

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.02  E-value=2e-10  Score=99.97  Aligned_cols=71  Identities=15%  Similarity=0.085  Sum_probs=61.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-----CCCCCccEEEEcC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-----APSLQGDVVFLSP  263 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~-----~~~~~~D~Ii~nP  263 (342)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++       .++.++.+|+.+.     .+..+||+|+++.
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~  124 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDLICANF  124 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCccEEEECc
Confidence            367999999999999999999989999999999999999987       2567889988876     2444699999998


Q ss_pred             CCC
Q psy15742        264 PWG  266 (342)
Q Consensus       264 P~~  266 (342)
                      .++
T Consensus       125 ~l~  127 (227)
T 3e8s_A          125 ALL  127 (227)
T ss_dssp             CCC
T ss_pred             hhh
Confidence            877

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.02  E-value=1.2e-09  Score=95.89  Aligned_cols=72  Identities=18%  Similarity=0.176  Sum_probs=65.9

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  262 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n  262 (342)
                      .++.+|||+|||+|-+++.++ .+..++|+|+|+.+++.++.++..+|.  +..+..+|....++.++||+|+++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~~~~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPPAEAGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCCCCBCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCCCCCcchHHHH
Confidence            457799999999999999988 778999999999999999999999986  789999999988877799999985

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.02  E-value=7.6e-10  Score=101.81  Aligned_cols=107  Identities=19%  Similarity=0.131  Sum_probs=76.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHH---cCCCCcEEEEEccccccC---CCCCccEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASV---YGVSHKIQFIQGDFFALA---PSLQGDVV  259 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~---~gl~~~i~~~~~D~~~~~---~~~~~D~I  259 (342)
                      +++.+|||+|||+|.++..+++.  ..+|+++|+|+.+++.|++++..   ....++++++.+|+.+++   ...+||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            45789999999999999999986  57999999999999999998843   112358999999998875   35689999


Q ss_pred             EEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        260 FLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       260 i~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      ++|+|..... .      ..+.    ....+..+.+.+.+++.+++
T Consensus       174 i~d~~~~~~~-~------~~l~----~~~~l~~~~~~LkpgG~lv~  208 (304)
T 3bwc_A          174 IIDTTDPAGP-A------SKLF----GEAFYKDVLRILKPDGICCN  208 (304)
T ss_dssp             EEECC----------------C----CHHHHHHHHHHEEEEEEEEE
T ss_pred             EECCCCcccc-c------hhhh----HHHHHHHHHHhcCCCcEEEE
Confidence            9998853211 0      0000    01234455666677666665

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.02  E-value=2.8e-10  Score=102.10  Aligned_cols=74  Identities=19%  Similarity=0.136  Sum_probs=64.0

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+.+.       +++++++|+.+++ ++++||+|++....+
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  105 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPDKSVDGVISILAIH  105 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCTTCBSEEEEESCGG
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCCCCEeEEEEcchHh
Confidence            45789999999999999999998899999999999998877654       7899999998876 457899999987665


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       106 ~~  107 (261)
T 3ege_A          106 HF  107 (261)
T ss_dssp             GC
T ss_pred             hc
Confidence            43

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.01  E-value=6.2e-10  Score=100.73  Aligned_cols=75  Identities=20%  Similarity=0.205  Sum_probs=65.9

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++.      .+++++.+|+.+++..++||+|+++..++.
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  129 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVDKPLDAVFSNAMLHW  129 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCSSCEEEEEEESCGGG
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcCCCcCEEEEcchhhh
Confidence            35789999999999999999998899999999999999999875      368899999998776678999999877655


Q ss_pred             C
Q psy15742        268 P  268 (342)
Q Consensus       268 ~  268 (342)
                      .
T Consensus       130 ~  130 (279)
T 3ccf_A          130 V  130 (279)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.01  E-value=9.2e-10  Score=95.12  Aligned_cols=74  Identities=16%  Similarity=0.104  Sum_probs=62.9

Q ss_pred             hcCCCCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcC
Q psy15742        186 RCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP  263 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nP  263 (342)
                      ...++.+|||+|||+|.++..+   +. +++|+|+|+.+++.|+++.      .+++++++|+.+.+ ++++||+|+++.
T Consensus        33 ~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~  103 (211)
T 2gs9_A           33 LLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFDVVLLFT  103 (211)
T ss_dssp             TCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEEEEEEES
T ss_pred             hcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEEEEEEcC
Confidence            3446889999999999999887   56 9999999999999999987      36889999998875 456899999987


Q ss_pred             CCCCC
Q psy15742        264 PWGGP  268 (342)
Q Consensus       264 P~~~~  268 (342)
                      ..+..
T Consensus       104 ~l~~~  108 (211)
T 2gs9_A          104 TLEFV  108 (211)
T ss_dssp             CTTTC
T ss_pred             hhhhc
Confidence            77655

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.01  E-value=9.9e-10  Score=96.81  Aligned_cols=76  Identities=18%  Similarity=0.124  Sum_probs=65.5

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++...    .+++++++|+.+.+ +..+||+|+++..++
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  118 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFDLAYSSLALH  118 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEEEEEEESCGG
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCceEEEEecccc
Confidence            477999999999999999998877 999999999999999988643    36899999998875 456899999987765


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       119 ~~  120 (243)
T 3bkw_A          119 YV  120 (243)
T ss_dssp             GC
T ss_pred             cc
Confidence            54

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.01  E-value=9.4e-10  Score=97.40  Aligned_cols=79  Identities=16%  Similarity=0.261  Sum_probs=66.5

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC------CCccEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS------LQGDVVF  260 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~------~~~D~Ii  260 (342)
                      ++++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++.   . .+++++++|+.+....      ..||+|+
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~---~-~~~~~~~~d~~~~~~~~~~~~~~~~d~v~  129 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT---A-ANISYRLLDGLVPEQAAQIHSEIGDANIY  129 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC---C-TTEEEEECCTTCHHHHHHHHHHHCSCEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc---c-cCceEEECcccccccccccccccCccEEE
Confidence            4567899999999999999999998899999999999999999872   1 3799999999886421      2489999


Q ss_pred             EcCCCCCCc
Q psy15742        261 LSPPWGGPE  269 (342)
Q Consensus       261 ~nPP~~~~~  269 (342)
                      ++..++...
T Consensus       130 ~~~~~~~~~  138 (245)
T 3ggd_A          130 MRTGFHHIP  138 (245)
T ss_dssp             EESSSTTSC
T ss_pred             EcchhhcCC
Confidence            998777664

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.01  E-value=3.6e-10  Score=107.36  Aligned_cols=81  Identities=23%  Similarity=0.313  Sum_probs=68.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHc-----C-CC-CcEEEEEcccccc------C
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVY-----G-VS-HKIQFIQGDFFAL------A  251 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~-----g-l~-~~i~~~~~D~~~~------~  251 (342)
                      .++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++|++.+     | .. .+++++++|+.++      +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            45789999999999999999885   569999999999999999998766     4 32 4899999999885      3


Q ss_pred             -CCCCccEEEEcCCCCCC
Q psy15742        252 -PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       252 -~~~~~D~Ii~nPP~~~~  268 (342)
                       ++++||+|+++..++..
T Consensus       162 ~~~~~fD~V~~~~~l~~~  179 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLS  179 (383)
T ss_dssp             CCTTCEEEEEEESCGGGC
T ss_pred             CCCCCEEEEEEccchhcC
Confidence             45689999999876654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.00  E-value=1.3e-09  Score=100.62  Aligned_cols=79  Identities=18%  Similarity=0.142  Sum_probs=66.9

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHH--cC-C-CCcEEEEEccccccC--CCCCccEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASV--YG-V-SHKIQFIQGDFFALA--PSLQGDVV  259 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~--~g-l-~~~i~~~~~D~~~~~--~~~~~D~I  259 (342)
                      +++.+|||+|||+|.++..+++.  +.+|+++|+|+.+++.|++++..  .+ + .++++++.+|+.++.  ..++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            45679999999999999999987  57999999999999999999865  22 2 358999999998864  35689999


Q ss_pred             EEcCCCC
Q psy15742        260 FLSPPWG  266 (342)
Q Consensus       260 i~nPP~~  266 (342)
                      ++|+|..
T Consensus       156 i~d~~~~  162 (314)
T 1uir_A          156 IIDLTDP  162 (314)
T ss_dssp             EEECCCC
T ss_pred             EECCCCc
Confidence            9998854

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.98  E-value=1.9e-09  Score=99.25  Aligned_cols=82  Identities=20%  Similarity=0.201  Sum_probs=65.7

Q ss_pred             hcCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcC------CCCcEEEEEccccccC-------
Q psy15742        186 RCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYG------VSHKIQFIQGDFFALA-------  251 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~g------l~~~i~~~~~D~~~~~-------  251 (342)
                      ..+++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++....+      ...+++++++|+.+.+       
T Consensus        31 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~  110 (313)
T 3bgv_A           31 KKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD  110 (313)
T ss_dssp             TC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred             ccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence            3346789999999999999999876 6799999999999999999987652      1237999999998864       


Q ss_pred             CCCCccEEEEcCCCCC
Q psy15742        252 PSLQGDVVFLSPPWGG  267 (342)
Q Consensus       252 ~~~~~D~Ii~nPP~~~  267 (342)
                      +.++||+|+++-..+.
T Consensus       111 ~~~~fD~V~~~~~l~~  126 (313)
T 3bgv_A          111 PQMCFDICSCQFVCHY  126 (313)
T ss_dssp             TTCCEEEEEEETCGGG
T ss_pred             CCCCEEEEEEecchhh
Confidence            2348999999766543

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.97  E-value=1.7e-09  Score=109.61  Aligned_cols=91  Identities=16%  Similarity=0.174  Sum_probs=73.4

Q ss_pred             HHHHHHHHHhcC--CCCeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHc------CCCCcEEEEEc
Q psy15742        177 EKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVY------GVSHKIQFIQG  245 (342)
Q Consensus       177 e~~~~~i~~~~~--~~~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~------gl~~~i~~~~~  245 (342)
                      +..++.+...+.  ++.+|||+|||+|.++..+++.+   .+|+|+|+|+.+++.|++++...      ++ .+++++++
T Consensus       707 eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqG  785 (950)
T 3htx_A          707 KQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDG  785 (950)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEES
T ss_pred             HHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEEC
Confidence            344555555443  68899999999999999999986   79999999999999999977542      55 48999999


Q ss_pred             cccccC-CCCCccEEEEcCCCCCC
Q psy15742        246 DFFALA-PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       246 D~~~~~-~~~~~D~Ii~nPP~~~~  268 (342)
                      |+.+++ ..+.||+|++.-.++..
T Consensus       786 Da~dLp~~d~sFDlVV~~eVLeHL  809 (950)
T 3htx_A          786 SILEFDSRLHDVDIGTCLEVIEHM  809 (950)
T ss_dssp             CTTSCCTTSCSCCEEEEESCGGGS
T ss_pred             chHhCCcccCCeeEEEEeCchhhC
Confidence            999876 34689999997666554

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.95  E-value=3.4e-09  Score=94.85  Aligned_cols=75  Identities=17%  Similarity=0.135  Sum_probs=62.5

Q ss_pred             HHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEE
Q psy15742        183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFL  261 (342)
Q Consensus       183 i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~  261 (342)
                      +...++++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++..     .+  ++++|+.+++ ++++||+|++
T Consensus        48 l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~~~~~~~fD~v~~  120 (260)
T 2avn_A           48 LEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDLPFPSGAFEAVLA  120 (260)
T ss_dssp             HHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSCCSCTTCEEEEEE
T ss_pred             HHHhcCCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHCCCCCCCEEEEEE
Confidence            33444567899999999999999999988899999999999999998864     12  8899998775 4568999999


Q ss_pred             cCC
Q psy15742        262 SPP  264 (342)
Q Consensus       262 nPP  264 (342)
                      ..+
T Consensus       121 ~~~  123 (260)
T 2avn_A          121 LGD  123 (260)
T ss_dssp             CSS
T ss_pred             cch
Confidence            654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.93  E-value=2.6e-09  Score=95.99  Aligned_cols=82  Identities=17%  Similarity=0.247  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhc-CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-C
Q psy15742        177 EKVAQHIASRC-KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P  252 (342)
Q Consensus       177 e~~~~~i~~~~-~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~  252 (342)
                      +.+.+.+...+ .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.|+++.      .++.++.+|+.+.+ +
T Consensus        72 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~  145 (269)
T 1p91_A           72 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFS  145 (269)
T ss_dssp             HHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBC
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCC
Confidence            44445555554 56889999999999999999987  789999999999999998875      26789999998765 4


Q ss_pred             CCCccEEEEcCC
Q psy15742        253 SLQGDVVFLSPP  264 (342)
Q Consensus       253 ~~~~D~Ii~nPP  264 (342)
                      +++||+|+++.+
T Consensus       146 ~~~fD~v~~~~~  157 (269)
T 1p91_A          146 DTSMDAIIRIYA  157 (269)
T ss_dssp             TTCEEEEEEESC
T ss_pred             CCceeEEEEeCC
Confidence            568999998644

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.92  E-value=6.6e-09  Score=91.62  Aligned_cols=76  Identities=13%  Similarity=0.044  Sum_probs=61.1

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVV  259 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~I  259 (342)
                      +++|.+|||+|||+|+++..+|+.   ..+|+|+|+|+.+++...+.++..   .++.++++|+....    ...+||+|
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~~~~~~D~I  150 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKSVVENVDVL  150 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTTTCCCEEEE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhccccceEEE
Confidence            457899999999999999999985   459999999999986665555443   37999999997642    13589999


Q ss_pred             EEcCCC
Q psy15742        260 FLSPPW  265 (342)
Q Consensus       260 i~nPP~  265 (342)
                      ++|-|.
T Consensus       151 ~~d~a~  156 (232)
T 3id6_C          151 YVDIAQ  156 (232)
T ss_dssp             EECCCC
T ss_pred             EecCCC
Confidence            999774

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.92  E-value=2.5e-09  Score=98.37  Aligned_cols=74  Identities=15%  Similarity=0.072  Sum_probs=63.6

Q ss_pred             CeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcCCC
Q psy15742        191 DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPPW  265 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nPP~  265 (342)
                      .+|||+|||+|.++..+++.  +.+|++||+|+.+++.|++++.... .++++++.+|+.++.   +..+||+|++|.+.
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            39999999999999999983  6799999999999999999986543 258999999998875   34689999999753

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.91  E-value=1.8e-09  Score=89.73  Aligned_cols=70  Identities=21%  Similarity=0.185  Sum_probs=58.6

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---------CCCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---------APSL  254 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---------~~~~  254 (342)
                      .+++.+|||+|||+|.++..+++.   +.+++|+|+|+ +++.           .+++++++|+.+.         .+..
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCC
Confidence            456889999999999999999987   37999999999 6532           3789999999876         3456


Q ss_pred             CccEEEEcCCCCCC
Q psy15742        255 QGDVVFLSPPWGGP  268 (342)
Q Consensus       255 ~~D~Ii~nPP~~~~  268 (342)
                      +||+|++|+|++..
T Consensus        88 ~~D~i~~~~~~~~~  101 (180)
T 1ej0_A           88 KVQVVMSDMAPNMS  101 (180)
T ss_dssp             CEEEEEECCCCCCC
T ss_pred             ceeEEEECCCcccc
Confidence            89999999998754

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.91  E-value=3.5e-09  Score=97.26  Aligned_cols=75  Identities=11%  Similarity=0.039  Sum_probs=57.5

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEEccc------ccc---CCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSH-----KIQFIQGDF------FAL---APS  253 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~-----~i~~~~~D~------~~~---~~~  253 (342)
                      ++.+|||+|||+|..+..++.. +.+|+|+|+|+.|++.|++++...+...     ++++.++|+      .++   .+.
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            4789999999999876665555 6799999999999999999987666421     267888887      322   245


Q ss_pred             CCccEEEEcC
Q psy15742        254 LQGDVVFLSP  263 (342)
Q Consensus       254 ~~~D~Ii~nP  263 (342)
                      ++||+|+|.-
T Consensus       128 ~~FD~V~~~~  137 (302)
T 2vdw_A          128 GKFNIIDWQF  137 (302)
T ss_dssp             SCEEEEEEES
T ss_pred             CCeeEEEECc
Confidence            6899999853

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.90  E-value=3.2e-09  Score=96.64  Aligned_cols=107  Identities=13%  Similarity=0.099  Sum_probs=78.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccccC--CCCCccEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALA--PSLQGDVVF  260 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~g--l-~~~i~~~~~D~~~~~--~~~~~D~Ii  260 (342)
                      +++.+|||+|||+|.++..+++.  ..+|+++|+|+.+++.|++++...+  + .++++++.+|+.++.  ...+||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            45679999999999999999986  5799999999999999999986542  2 358999999998764  246899999


Q ss_pred             EcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        261 LSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       261 ~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      +|++..... .      ..+.    ....+..+.+.+.+++.+.+
T Consensus       157 ~d~~~~~~~-~------~~l~----~~~~l~~~~~~L~pgG~lv~  190 (283)
T 2i7c_A          157 VDSSDPIGP-A------ETLF----NQNFYEKIYNALKPNGYCVA  190 (283)
T ss_dssp             EECCCTTTG-G------GGGS----SHHHHHHHHHHEEEEEEEEE
T ss_pred             EcCCCCCCc-c------hhhh----HHHHHHHHHHhcCCCcEEEE
Confidence            998743210 0      0111    01244455666777777765

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.89  E-value=1.8e-09  Score=93.95  Aligned_cols=77  Identities=22%  Similarity=0.352  Sum_probs=61.6

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----HHHHcCCCCcEEEEEccccccCC-CCCccEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQH----NASVYGVSHKIQFIQGDFFALAP-SLQGDVVF  260 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~----n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii  260 (342)
                      +++.+|||+|||+|.++..+++.  +.+|+|+|+|+.|++.+.+    +....++ ++++++++|+.+++. ... |.|+
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~-d~v~  103 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSGV-GELH  103 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCCE-EEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCCC-CEEE
Confidence            45789999999999999999998  7899999999998886433    3444566 489999999998763 334 8888


Q ss_pred             EcCCCC
Q psy15742        261 LSPPWG  266 (342)
Q Consensus       261 ~nPP~~  266 (342)
                      +..||.
T Consensus       104 ~~~~~~  109 (218)
T 3mq2_A          104 VLMPWG  109 (218)
T ss_dssp             EESCCH
T ss_pred             EEccch
Confidence            777754

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.85  E-value=1.2e-09  Score=96.75  Aligned_cols=69  Identities=20%  Similarity=0.289  Sum_probs=58.0

Q ss_pred             CCeEEeccCCCcHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---C--CCCCccE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---A--PSLQGDV  258 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~------~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---~--~~~~~D~  258 (342)
                      +.+|||+|||+|..+..+|+.      +.+|+|+|+|+.+++.|+      ++.++++++++|+.+.   .  ...+||+
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~~~~fD~  155 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLREMAHPL  155 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhccCCCCE
Confidence            579999999999999999986      689999999999998887      1225899999999874   2  2337999


Q ss_pred             EEEcCC
Q psy15742        259 VFLSPP  264 (342)
Q Consensus       259 Ii~nPP  264 (342)
                      |++|..
T Consensus       156 I~~d~~  161 (236)
T 2bm8_A          156 IFIDNA  161 (236)
T ss_dssp             EEEESS
T ss_pred             EEECCc
Confidence            999865

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.85  E-value=1.1e-08  Score=94.88  Aligned_cols=79  Identities=23%  Similarity=0.225  Sum_probs=68.2

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||+|.++..+++.  +.+++++|++ .+++.|++++...++.++++++.+|+.+......||+|++.-..
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l  242 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFL  242 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchh
Confidence            56789999999999999999987  6799999999 99999999999999877899999999876433459999996554


Q ss_pred             CC
Q psy15742        266 GG  267 (342)
Q Consensus       266 ~~  267 (342)
                      +.
T Consensus       243 ~~  244 (335)
T 2r3s_A          243 HH  244 (335)
T ss_dssp             GG
T ss_pred             cc
Confidence            43

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.83  E-value=7.6e-09  Score=88.56  Aligned_cols=68  Identities=25%  Similarity=0.299  Sum_probs=55.8

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---------C---CC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------P---SL  254 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---------~---~~  254 (342)
                      ++++.+|||+|||+|.++..+++.+.+|+|+|+++..           .. .+++++++|+.+..         .   .+
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALREEGIE   90 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence            4578899999999999999999988899999999741           22 37899999998753         1   03


Q ss_pred             CccEEEEcCCCC
Q psy15742        255 QGDVVFLSPPWG  266 (342)
Q Consensus       255 ~~D~Ii~nPP~~  266 (342)
                      +||+|++|+|..
T Consensus        91 ~~D~Vlsd~~~~  102 (191)
T 3dou_A           91 KVDDVVSDAMAK  102 (191)
T ss_dssp             SEEEEEECCCCC
T ss_pred             cceEEecCCCcC
Confidence            899999998754

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.82  E-value=3.4e-08  Score=93.15  Aligned_cols=79  Identities=16%  Similarity=0.204  Sum_probs=68.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      +++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.|++++...++.++++++.+|+.+..+. .||+|++.-..
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~-~~D~v~~~~vl  278 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPD-GADVYLIKHVL  278 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCS-SCSEEEEESCG
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCC-CceEEEhhhhh
Confidence            45789999999999999999987  679999999 999999999999999878999999999854444 79999997665


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      +..
T Consensus       279 h~~  281 (369)
T 3gwz_A          279 HDW  281 (369)
T ss_dssp             GGS
T ss_pred             ccC
Confidence            543

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.82  E-value=1.6e-08  Score=95.20  Aligned_cols=79  Identities=24%  Similarity=0.259  Sum_probs=68.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      +++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.|++++..+++.++++++.+|+.+..+. .||+|+++..+
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~v~~~~vl  258 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPV-TADVVLLSFVL  258 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC-CEEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCC-CCCEEEEeccc
Confidence            46789999999999999999987  579999999 999999999999999877899999999874443 49999998776


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      +..
T Consensus       259 ~~~  261 (374)
T 1qzz_A          259 LNW  261 (374)
T ss_dssp             GGS
T ss_pred             cCC
Confidence            543

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.81  E-value=3.5e-09  Score=95.28  Aligned_cols=75  Identities=9%  Similarity=-0.165  Sum_probs=63.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY--GV-SHKIQFIQGDFFALAPSLQGDVVFLSPP  264 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~--gl-~~~i~~~~~D~~~~~~~~~~D~Ii~nPP  264 (342)
                      +.+.+|||+|||+|.++..+++.+.+|+++|+|+.+++.|++++...  ++ .++++++.+|+.+++  .+||+|++|.+
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d~~  148 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCLQE  148 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEESSC
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEECCC
Confidence            34679999999999999998876689999999999999999887431  22 248999999999876  68999999954

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.81  E-value=2.1e-08  Score=94.42  Aligned_cols=80  Identities=15%  Similarity=0.098  Sum_probs=68.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc--CCCCCccEEEEcC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL--APSLQGDVVFLSP  263 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~--~~~~~~D~Ii~nP  263 (342)
                      .++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.|++++...++.++++++.+|+++.  +....||+|++.-
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~  256 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ  256 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence            35679999999999999999985  679999999 999999999999888877899999999985  2226899999976


Q ss_pred             CCCCC
Q psy15742        264 PWGGP  268 (342)
Q Consensus       264 P~~~~  268 (342)
                      -.+..
T Consensus       257 vlh~~  261 (363)
T 3dp7_A          257 FLDCF  261 (363)
T ss_dssp             CSTTS
T ss_pred             hhhhC
Confidence            65543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.80  E-value=2.8e-09  Score=95.82  Aligned_cols=139  Identities=12%  Similarity=-0.008  Sum_probs=84.0

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC----------------------------CC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGV----------------------------SH  238 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl----------------------------~~  238 (342)
                      .++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++++.+..                            ..
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            357799999999998888777665 4799999999999999998765421                            01


Q ss_pred             cEE-EEEccccccC-----CCCCccEEEEcCCCCCC-----ccccccccccccCcCCCCchhhhHhhhccCCCce-----
Q psy15742        239 KIQ-FIQGDFFALA-----PSLQGDVVFLSPPWGGP-----EYARSSFSIDNIFPEQGGGRRLFQVARGISPNVG-----  302 (342)
Q Consensus       239 ~i~-~~~~D~~~~~-----~~~~~D~Ii~nPP~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  302 (342)
                      ++. ++++|+.+..     ...+||+|+++--.+..     ++......+.+++++  ||..++...  ......     
T Consensus       134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP--GG~li~~~~--~~~~~~~~g~~  209 (263)
T 2a14_A          134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP--GGHLVTTVT--LRLPSYMVGKR  209 (263)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE--EEEEEEEEE--SSCCEEEETTE
T ss_pred             hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC--CcEEEEEEe--ecCccceeCCe
Confidence            243 8999998742     24589999996332211     111223334456655  454433311  111110     


Q ss_pred             eecCCCCCHHHHHHhh-CCCcEEEEeccc
Q psy15742        303 YYLPRTSDVFEIFHDS-GKKGSFISLTGR  330 (342)
Q Consensus       303 ~~l~~~~~~~~l~~~~-~~~~~i~~i~~~  330 (342)
                      .+........++...+ ..|+++..+...
T Consensus       210 ~~~~~~~~~~~l~~~l~~aGF~i~~~~~~  238 (263)
T 2a14_A          210 EFSCVALEKGEVEQAVLDAGFDIEQLLHS  238 (263)
T ss_dssp             EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             EeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence            0111123555555544 467888776543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.78  E-value=3e-09  Score=92.60  Aligned_cols=73  Identities=19%  Similarity=0.155  Sum_probs=60.6

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPP  264 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nPP  264 (342)
                      .++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.++++.        .+++.+|+.+..   ++++||+|+++-.
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~~~~~  102 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVIFGDV  102 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEEECCh
Confidence            35789999999999999999988899999999999999998764        268899987632   3468999999766


Q ss_pred             CCCC
Q psy15742        265 WGGP  268 (342)
Q Consensus       265 ~~~~  268 (342)
                      ++..
T Consensus       103 l~~~  106 (230)
T 3cc8_A          103 LEHL  106 (230)
T ss_dssp             GGGS
T ss_pred             hhhc
Confidence            5543

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.78  E-value=5.9e-09  Score=83.99  Aligned_cols=73  Identities=14%  Similarity=0.084  Sum_probs=58.3

Q ss_pred             HHHHHHHHhcCCCCeEEeccCCCc-HHHHHHHH-hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--
Q psy15742        178 KVAQHIASRCKASDVVIDGFCGCG-GNTIQFAA-VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--  253 (342)
Q Consensus       178 ~~~~~i~~~~~~~~~vLDlgcGtG-~~~~~~a~-~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--  253 (342)
                      .+.+.+.+...++.+|||+|||.| ..+..+++ .+..|+++|+++.+++                +++.|+++...+  
T Consensus        24 ~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P~~~~Y   87 (153)
T 2k4m_A           24 DLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSPRMEIY   87 (153)
T ss_dssp             HHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSCCHHHH
T ss_pred             HHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCCccccc
Confidence            344555555566779999999999 69999998 6999999999997665                889999985432  


Q ss_pred             CCccEE-EEcCCCC
Q psy15742        254 LQGDVV-FLSPPWG  266 (342)
Q Consensus       254 ~~~D~I-i~nPP~~  266 (342)
                      ..||+| -.|||..
T Consensus        88 ~~~DLIYsirPP~E  101 (153)
T 2k4m_A           88 RGAALIYSIRPPAE  101 (153)
T ss_dssp             TTEEEEEEESCCTT
T ss_pred             CCcCEEEEcCCCHH
Confidence            389999 7899943

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.77  E-value=4e-09  Score=94.13  Aligned_cols=78  Identities=15%  Similarity=0.019  Sum_probs=63.0

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCC----------------------------CCc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGV----------------------------SHK  239 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~-~v~gvD~s~~~l~~a~~n~~~~gl----------------------------~~~  239 (342)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...+.                            ..+
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  135 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA  135 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence            467999999999999999988876 999999999999999999865431                            012


Q ss_pred             E-EEEEccccccC--CC---CCccEEEEcCCCC
Q psy15742        240 I-QFIQGDFFALA--PS---LQGDVVFLSPPWG  266 (342)
Q Consensus       240 i-~~~~~D~~~~~--~~---~~~D~Ii~nPP~~  266 (342)
                      + +++++|+.+..  +.   ++||+|+++-..+
T Consensus       136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~  168 (265)
T 2i62_A          136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLD  168 (265)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH
T ss_pred             heeEEEeeeccCCCCCccccCCccEEEEhhhhh
Confidence            7 89999998764  34   6899999965433

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.77  E-value=2.7e-08  Score=92.35  Aligned_cols=77  Identities=22%  Similarity=0.204  Sum_probs=66.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      ++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.|++++...++.++++++.+|+.+..+. .||+|++.--.+
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~-~~D~v~~~~vlh  246 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPA-GAGGYVLSAVLH  246 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC-SCSEEEEESCGG
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCC-CCcEEEEehhhc
Confidence            4679999999999999999986  678999999 999999999999999877999999999854444 899999965554


Q ss_pred             C
Q psy15742        267 G  267 (342)
Q Consensus       267 ~  267 (342)
                      .
T Consensus       247 ~  247 (332)
T 3i53_A          247 D  247 (332)
T ss_dssp             G
T ss_pred             c
Confidence            3

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.75  E-value=1.5e-08  Score=95.20  Aligned_cols=79  Identities=18%  Similarity=0.221  Sum_probs=68.2

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      +++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.|++++...++.++++++.+|+.+.+.. .+|+|++.-.+
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~v~~~~vl  266 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRIL  266 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC-CCSEEEEESCG
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC-CCCEEEEechh
Confidence            46789999999999999999987  679999999 999999999999999877799999999886433 34999997776


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      +..
T Consensus       267 h~~  269 (359)
T 1x19_A          267 YSA  269 (359)
T ss_dssp             GGS
T ss_pred             ccC
Confidence            543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.75  E-value=2.6e-08  Score=93.42  Aligned_cols=79  Identities=22%  Similarity=0.277  Sum_probs=68.2

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      +++.+|||+|||+|.++..+++.  ..+++++|+ +.+++.|++|+..+++.++++++.+|+.+..+. .||+|+++..+
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~v~~~~vl  259 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPR-KADAIILSFVL  259 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSS-CEEEEEEESCG
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCC-CccEEEEcccc
Confidence            46789999999999999999987  578999999 999999999999999877899999999874443 49999998776


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      +..
T Consensus       260 ~~~  262 (360)
T 1tw3_A          260 LNW  262 (360)
T ss_dssp             GGS
T ss_pred             cCC
Confidence            543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.73  E-value=5e-08  Score=83.39  Aligned_cols=69  Identities=19%  Similarity=0.190  Sum_probs=55.5

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------  251 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------  251 (342)
                      ++++.+|||+|||+|.++..+++.    +.+|+|+|+|+.+           .. ++++++++|+.+..           
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~   87 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYID   87 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC-------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhccccccc
Confidence            456889999999999999999986    3789999999831           22 36899999998764           


Q ss_pred             ---------------CCCCccEEEEcCCCCC
Q psy15742        252 ---------------PSLQGDVVFLSPPWGG  267 (342)
Q Consensus       252 ---------------~~~~~D~Ii~nPP~~~  267 (342)
                                     +..+||+|++|++++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~  118 (201)
T 2plw_A           88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPC  118 (201)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECCCCCC
T ss_pred             cccchhhHHHHHhhcCCCcccEEEeCCCcCC
Confidence                           3458999999987543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.71  E-value=6.4e-08  Score=87.47  Aligned_cols=72  Identities=22%  Similarity=0.209  Sum_probs=55.7

Q ss_pred             CCeEEeccCCCcH----HHHHHHHh------CCEEEEEeCCHHHHHHHHHHHHH-----------------------cC-
Q psy15742        190 SDVVIDGFCGCGG----NTIQFAAV------CQKVISIDIDPAKLRLAQHNASV-----------------------YG-  235 (342)
Q Consensus       190 ~~~vLDlgcGtG~----~~~~~a~~------~~~v~gvD~s~~~l~~a~~n~~~-----------------------~g-  235 (342)
                      +.+|||+|||||.    +++.+++.      +.+|+|+|+|+.|++.|++++..                       .| 
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            5699999999998    56666654      25899999999999999998510                       01 


Q ss_pred             --C----CCcEEEEEccccccC-C-CCCccEEEE
Q psy15742        236 --V----SHKIQFIQGDFFALA-P-SLQGDVVFL  261 (342)
Q Consensus       236 --l----~~~i~~~~~D~~~~~-~-~~~~D~Ii~  261 (342)
                        +    ..++.|.++|+.+.+ + .++||+|+|
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~c  219 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFC  219 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEE
T ss_pred             eeechhhcccCeEEecccCCCCCCcCCCeeEEEE
Confidence              1    126999999999843 2 468999999

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.70  E-value=2.8e-08  Score=90.30  Aligned_cols=79  Identities=11%  Similarity=-0.013  Sum_probs=57.7

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHc-----------------CCC------------C
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVY-----------------GVS------------H  238 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~-----------------gl~------------~  238 (342)
                      ++.+|||+|||+|..+..++.. +.+|+|+|+|+.|++.|++++...                 +..            .
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            5779999999999966555553 789999999999999999876432                 100            0


Q ss_pred             cEEEEEccccccC-------CCCCccEEEEcCCCCC
Q psy15742        239 KIQFIQGDFFALA-------PSLQGDVVFLSPPWGG  267 (342)
Q Consensus       239 ~i~~~~~D~~~~~-------~~~~~D~Ii~nPP~~~  267 (342)
                      .++++.+|+.+..       +.++||+|+++-.++.
T Consensus       151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~  186 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEA  186 (289)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHH
T ss_pred             hceEEecccCCCCCccccccCCCCCCEEEehhhhhh
Confidence            1567888998732       2346999999865443

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.69  E-value=3.7e-08  Score=92.03  Aligned_cols=78  Identities=18%  Similarity=0.143  Sum_probs=68.8

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEEcCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPW  265 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~nPP~  265 (342)
                      +.+|||+|||+|.++..+++.  +.+++++|+ +.+++.|++++...++.++++++.+|+.+..  ....||+|++.-..
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl  258 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL  258 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence            779999999999999999987  679999999 8899999999999998778999999999875  55679999997665


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      +..
T Consensus       259 h~~  261 (352)
T 3mcz_A          259 HYF  261 (352)
T ss_dssp             GGS
T ss_pred             ccC
Confidence            543

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.68  E-value=4.4e-08  Score=91.70  Aligned_cols=84  Identities=17%  Similarity=0.202  Sum_probs=72.1

Q ss_pred             HhcCCCCeEEeccCCCcHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEEEccccccC--CCCC
Q psy15742        185 SRCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVS-----HKIQFIQGDFFALA--PSLQ  255 (342)
Q Consensus       185 ~~~~~~~~vLDlgcGtG~~~~~~a~~~--~~v~gvD~s~~~l~~a~~n~~~~gl~-----~~i~~~~~D~~~~~--~~~~  255 (342)
                      -..++|.+|||+|||.|+-+.++|..+  ..|+++|+|+..++..++|+++.+..     .++.+...|...+.  ....
T Consensus       144 L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~  223 (359)
T 4fzv_A          144 LGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDT  223 (359)
T ss_dssp             HCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTC
T ss_pred             hCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcccc
Confidence            345679999999999999999998863  47999999999999999999988753     47899999988764  3568


Q ss_pred             ccEEEEcCCCCCC
Q psy15742        256 GDVVFLSPPWGGP  268 (342)
Q Consensus       256 ~D~Ii~nPP~~~~  268 (342)
                      ||.|++|+|+++.
T Consensus       224 fD~VLlDaPCSg~  236 (359)
T 4fzv_A          224 YDRVLVDVPCTTD  236 (359)
T ss_dssp             EEEEEEECCCCCH
T ss_pred             CCEEEECCccCCC
Confidence            9999999999873

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.68  E-value=4.2e-09  Score=94.61  Aligned_cols=76  Identities=11%  Similarity=0.184  Sum_probs=66.0

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEEcCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPP  264 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~nPP  264 (342)
                      +..+||+++|||.+++++.+.+.+++.+|.++..++..++|++.   .+++++++.|....+     +..+||+|++|||
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP  168 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS  168 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred             CCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence            45789999999999999999889999999999999999999975   358999999987643     3347999999999


Q ss_pred             CCCC
Q psy15742        265 WGGP  268 (342)
Q Consensus       265 ~~~~  268 (342)
                      |...
T Consensus       169 Ye~k  172 (283)
T 2oo3_A          169 YERK  172 (283)
T ss_dssp             CCST
T ss_pred             CCCC
Confidence            9853

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.68  E-value=3.5e-08  Score=85.80  Aligned_cols=67  Identities=10%  Similarity=0.068  Sum_probs=56.7

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~~~  268 (342)
                      +.+|||+|||+|.++..++..    +|+|+|+.+++.|+++        +++++++|+.+.+ +.++||+|+++..+...
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  115 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICFV  115 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGGS
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHhhc
Confidence            779999999999999988755    9999999999999987        4689999998765 34589999998665543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.67  E-value=4.4e-08  Score=90.86  Aligned_cols=75  Identities=23%  Similarity=0.323  Sum_probs=65.9

Q ss_pred             CeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        191 DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      .+|||+|||+|..+..+++.  +.+++++|+ +.+++.|++++...++.++++++.+|+.+..+ ..||+|++.-..+.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~v~~~~vl~~  245 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVP-SNGDIYLLSRIIGD  245 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCC-SSCSEEEEESCGGG
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCC-CCCCEEEEchhccC
Confidence            79999999999999999987  679999999 99999999999888876789999999988434 57999999766553

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.65  E-value=1.9e-07  Score=80.24  Aligned_cols=75  Identities=19%  Similarity=0.232  Sum_probs=63.6

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEEcccccc---------------
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGV--SHKIQFIQGDFFAL---------------  250 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl--~~~i~~~~~D~~~~---------------  250 (342)
                      +.++|||+||  |+.++.+|+. +.+|+++|.+++..+.|++|++.+|+  .++++++.+|+.+.               
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            4679999998  5788888886 78999999999999999999999998  78999999997543               


Q ss_pred             ---------C-CCCCccEEEEcCCC
Q psy15742        251 ---------A-PSLQGDVVFLSPPW  265 (342)
Q Consensus       251 ---------~-~~~~~D~Ii~nPP~  265 (342)
                               . ..++||+||+|-.+
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~k  132 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGRF  132 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSSS
T ss_pred             HHHhhhhhccccCCCCCEEEEeCCC
Confidence                     1 23689999999753

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.63  E-value=1e-07  Score=85.52  Aligned_cols=76  Identities=20%  Similarity=0.265  Sum_probs=65.7

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------CCCCccEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDVVF  260 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~~~~~D~Ii  260 (342)
                      +++++.++|.+||.|+.+..+++.+.+|+|+|.|+.+++.|++ +..    ++++++++|+.++.      ...++|.|+
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g~~~vDgIL   94 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALGVERVDGIL   94 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcCCCCcCEEE
Confidence            3568899999999999999999987899999999999999998 643    48999999998763      224799999


Q ss_pred             EcCCCCC
Q psy15742        261 LSPPWGG  267 (342)
Q Consensus       261 ~nPP~~~  267 (342)
                      +|+.+..
T Consensus        95 ~DLGvSS  101 (285)
T 1wg8_A           95 ADLGVSS  101 (285)
T ss_dssp             EECSCCH
T ss_pred             eCCcccc
Confidence            9999875

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.63  E-value=2.1e-07  Score=84.09  Aligned_cols=76  Identities=14%  Similarity=0.048  Sum_probs=60.7

Q ss_pred             CCeEEeccCCC---cHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc------------CC
Q psy15742        190 SDVVIDGFCGC---GGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL------------AP  252 (342)
Q Consensus       190 ~~~vLDlgcGt---G~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~------------~~  252 (342)
                      ..+|||+|||+   |.++..+++.  +.+|+++|+|+.|++.|++++..   .++++++++|+.+.            .+
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~~d  154 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRMID  154 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhccCC
Confidence            47999999999   9887766654  68999999999999999999853   24799999999753            22


Q ss_pred             CCCccEEEEcCCCCCC
Q psy15742        253 SLQGDVVFLSPPWGGP  268 (342)
Q Consensus       253 ~~~~D~Ii~nPP~~~~  268 (342)
                      ..+||+|+++--++..
T Consensus       155 ~~~~d~v~~~~vlh~~  170 (274)
T 2qe6_A          155 FSRPAAIMLVGMLHYL  170 (274)
T ss_dssp             TTSCCEEEETTTGGGS
T ss_pred             CCCCEEEEEechhhhC
Confidence            2479999997665544

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.63  E-value=3.7e-09  Score=95.80  Aligned_cols=75  Identities=16%  Similarity=0.133  Sum_probs=56.5

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEE--EccccccCCCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS-VYGVSHKIQFI--QGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~-~~gl~~~i~~~--~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      ++++.+|||+|||+|.++..+++. .+|+|+|+++ ++..++++.. ......++.++  ++|+.+++ +.+||+|++|.
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~fD~Vvsd~  156 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME-PFQADTVLCDI  156 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-CCCCSEEEECC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-CCCcCEEEECC
Confidence            356889999999999999999988 7899999998 5433322210 01111268999  99998875 56899999997


Q ss_pred             C
Q psy15742        264 P  264 (342)
Q Consensus       264 P  264 (342)
                      .
T Consensus       157 ~  157 (276)
T 2wa2_A          157 G  157 (276)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.62  E-value=2e-08  Score=91.43  Aligned_cols=79  Identities=6%  Similarity=-0.034  Sum_probs=56.6

Q ss_pred             CCCeEEeccCCCcHHHHHHH----Hh--CCEE--EEEeCCHHHHHHHHHHHHHc-CCCCcE--EEEEccccccC------
Q psy15742        189 ASDVVIDGFCGCGGNTIQFA----AV--CQKV--ISIDIDPAKLRLAQHNASVY-GVSHKI--QFIQGDFFALA------  251 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a----~~--~~~v--~gvD~s~~~l~~a~~n~~~~-gl~~~i--~~~~~D~~~~~------  251 (342)
                      ++.+|||+|||+|.++..++    ..  +..|  +|+|.|+.|++.|++++... ++ .++  .+..+++.++.      
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhccc
Confidence            46799999999998765432    22  3444  99999999999999998754 44 344  44566765543      


Q ss_pred             -CCCCccEEEEcCCCCCC
Q psy15742        252 -PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       252 -~~~~~D~Ii~nPP~~~~  268 (342)
                       ++++||+|++.--.+..
T Consensus       131 ~~~~~fD~V~~~~~l~~~  148 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYV  148 (292)
T ss_dssp             TCCCCEEEEEEESCGGGC
T ss_pred             cCCCceeEEEEeeeeeec
Confidence             35689999997655544

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.62  E-value=7.3e-09  Score=93.30  Aligned_cols=75  Identities=17%  Similarity=0.145  Sum_probs=56.1

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEE--EccccccCCCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASV-YGVSHKIQFI--QGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~-~gl~~~i~~~--~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      ++++.+|||+|||+|.++..+++. .+|+|+|+++ ++..++++... .....++.++  ++|+.+++ +.+||+|++|.
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~fD~V~sd~  148 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP-VERTDVIMCDV  148 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-CCCCSEEEECC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC-CCCCcEEEEeC
Confidence            457889999999999999999988 7899999998 53322211100 0111168899  99999875 56899999997


Q ss_pred             C
Q psy15742        264 P  264 (342)
Q Consensus       264 P  264 (342)
                      .
T Consensus       149 ~  149 (265)
T 2oxt_A          149 G  149 (265)
T ss_dssp             C
T ss_pred             c
Confidence            7

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.58  E-value=2.1e-08  Score=91.19  Aligned_cols=87  Identities=13%  Similarity=0.054  Sum_probs=60.2

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE-EEccccccC----CCCCccEEEEc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQF-IQGDFFALA----PSLQGDVVFLS  262 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~-~~~D~~~~~----~~~~~D~Ii~n  262 (342)
                      ++.+|||+|||||.++..+++.+ .+|+|+|+|+.|++++.++-      .++.. ...|+....    +...||+|++|
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d  158 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRYAEPVDFTEGLPSFASID  158 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGGCCGGGCTTCCCSEEEEC
T ss_pred             cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceecccCceecchhhCCCCCCCEEEEE
Confidence            47799999999999999998884 69999999999999865431      13322 233443332    23359999999


Q ss_pred             CCCCCCccccccccccccCcC
Q psy15742        263 PPWGGPEYARSSFSIDNIFPE  283 (342)
Q Consensus       263 PP~~~~~~~~~~~~~~~~~~~  283 (342)
                      -.|+..  ......+.+++++
T Consensus       159 ~sf~sl--~~vL~e~~rvLkp  177 (291)
T 3hp7_A          159 VSFISL--NLILPALAKILVD  177 (291)
T ss_dssp             CSSSCG--GGTHHHHHHHSCT
T ss_pred             eeHhhH--HHHHHHHHHHcCc
Confidence            888743  2334445566654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.58  E-value=1.8e-08  Score=87.29  Aligned_cols=60  Identities=20%  Similarity=0.097  Sum_probs=49.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      .++.+|||+|||+|.++..++   .+++|+|+|+.                +++++++|+.+.+ +.++||+|+++..++
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  126 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR---NPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLSLM  126 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC---SCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESCCC
T ss_pred             CCCCeEEEECCcCCHHHHHhh---ccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehhcc
Confidence            457799999999999988773   78999999986                3568899998865 456899999988775

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.58  E-value=1.6e-08  Score=89.30  Aligned_cols=90  Identities=10%  Similarity=-0.007  Sum_probs=57.0

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCC--cEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSH--KIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~--~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      ++.+|||+|||||.++..+++.+ .+|+|+|+|+.|+++|+++........  ++.+...  .++ +...+|.+.+|..|
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~d~~~~D~v~  113 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVL--ADF-EQGRPSFTSIDVSF  113 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCG--GGC-CSCCCSEEEECCSS
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCH--hHc-CcCCCCEEEEEEEh
Confidence            36799999999999999999986 599999999999999887653221100  1111111  111 11135777777776


Q ss_pred             CCCccccccccccccCcC
Q psy15742        266 GGPEYARSSFSIDNIFPE  283 (342)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~  283 (342)
                      ...  ......+.+++++
T Consensus       114 ~~l--~~~l~~i~rvLkp  129 (232)
T 3opn_A          114 ISL--DLILPPLYEILEK  129 (232)
T ss_dssp             SCG--GGTHHHHHHHSCT
T ss_pred             hhH--HHHHHHHHHhccC
Confidence            543  2233444555554

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.50  E-value=1.7e-07  Score=79.68  Aligned_cols=68  Identities=15%  Similarity=0.089  Sum_probs=53.9

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-C----------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-EccccccC---
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-C----------QKVISIDIDPAKLRLAQHNASVYGVSHKIQFI-QGDFFALA---  251 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~----------~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~-~~D~~~~~---  251 (342)
                      ++++.+|||+|||+|.++..+++. +          .+|+|+|+|+.+           .+ .+++++ .+|+.+..   
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHH
Confidence            456889999999999999999987 3          789999999831           22 368899 99976542   


Q ss_pred             ------CCCCccEEEEcCCCC
Q psy15742        252 ------PSLQGDVVFLSPPWG  266 (342)
Q Consensus       252 ------~~~~~D~Ii~nPP~~  266 (342)
                            ++.+||+|++|++..
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~  108 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPN  108 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCC
T ss_pred             HHHHhcCCCCCcEEEeCCCCC
Confidence                  234799999998654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.49  E-value=1.5e-08  Score=96.98  Aligned_cols=77  Identities=8%  Similarity=0.088  Sum_probs=57.6

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEE-EEEccccccC-CCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQ-FIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~-~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      +++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++    ++..... +...+...++ ++++||+|+++-.+
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl  181 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTEGPANVIYAANTL  181 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHHCCEEEEEEESCG
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCCCCEEEEEECChH
Confidence            4678999999999999999999989999999999999999876    4421111 2233333332 34689999998766


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      ++.
T Consensus       182 ~h~  184 (416)
T 4e2x_A          182 CHI  184 (416)
T ss_dssp             GGC
T ss_pred             Hhc
Confidence            554

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=98.45  E-value=3.2e-07  Score=85.67  Aligned_cols=139  Identities=14%  Similarity=0.174  Sum_probs=80.8

Q ss_pred             CeEEeccCCCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC----CCccEEEEcC
Q psy15742        191 DVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS----LQGDVVFLSP  263 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~~---~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~----~~~D~Ii~nP  263 (342)
                      .+|+|+|||.|++++.+.+.|   ..|.++|+++.+++..+.|..      +..++++|+.++...    ..+|+|+.+|
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~~~~~D~l~~gp   76 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcCcCCcCEEEEcC
Confidence            479999999999999998876   368999999999999999974      345788999887521    2699999999


Q ss_pred             CCCCCccccccccccccCcCCCCchhhhHhhhccC--CCceee--cCCC---CCHHHHHH-hhCCCcEEEE--ecccCC-
Q psy15742        264 PWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGIS--PNVGYY--LPRT---SDVFEIFH-DSGKKGSFIS--LTGRQM-  332 (342)
Q Consensus       264 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--l~~~---~~~~~l~~-~~~~~~~i~~--i~~~~~-  332 (342)
                      |+.+.+..+......+ ... .-...++++...+.  |..+++  ++.-   .....+.. +..-||.+..  +.+.++ 
T Consensus        77 PCq~fS~ag~~~g~~d-~r~-~l~~~~~~~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~G  154 (343)
T 1g55_A           77 PCQPFTRIGRQGDMTD-SRT-NSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLG  154 (343)
T ss_dssp             C--------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEEEECGGGGT
T ss_pred             CCcchhhcCCcCCccC-ccc-hHHHHHHHHHHHhcCCCCEEEEeCCccccCHHHHHHHHHHHHHCCCeeEEEEEEHHHCC
Confidence            9876654432111111 010 00113556666665  666555  3431   11222222 2234666554  445555 


Q ss_pred             CCCCC
Q psy15742        333 FSPSQ  337 (342)
Q Consensus       333 fp~t~  337 (342)
                      .|+++
T Consensus       155 vPQ~R  159 (343)
T 1g55_A          155 IPNSR  159 (343)
T ss_dssp             CSCCC
T ss_pred             CCCcc
Confidence            55554

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.40  E-value=5.1e-08  Score=89.56  Aligned_cols=75  Identities=20%  Similarity=0.294  Sum_probs=56.1

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeC----CHHHHHHHHHHHHHcCCCCcEEEEEc-cccccCCCCCccEEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDI----DPAKLRLAQHNASVYGVSHKIQFIQG-DFFALAPSLQGDVVFL  261 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~----s~~~l~~a~~n~~~~gl~~~i~~~~~-D~~~~~~~~~~D~Ii~  261 (342)
                      ++++.+|||+|||+|.++..+++. .+|+|+|+    ++.+++.+.  .+..+. +++.++++ |+.+++ ..+||+|++
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~l~-~~~fD~V~s  154 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFFIP-PERCDTLLC  154 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTTSC-CCCCSEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEeccccccCC-cCCCCEEEE
Confidence            456889999999999999999988 58999999    554432111  111122 47999999 998764 458999999


Q ss_pred             cCCCC
Q psy15742        262 SPPWG  266 (342)
Q Consensus       262 nPP~~  266 (342)
                      |-++.
T Consensus       155 d~~~~  159 (305)
T 2p41_A          155 DIGES  159 (305)
T ss_dssp             CCCCC
T ss_pred             CCccc
Confidence            97764

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.40  E-value=9.1e-08  Score=89.40  Aligned_cols=76  Identities=21%  Similarity=0.239  Sum_probs=59.0

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      +++.+|||+|||+|.++..+++.  ..+++++|+ +.++.  +.+++..++.++++++.+|+++..+  .||+|++.--.
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p--~~D~v~~~~vl  257 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREVP--HADVHVLKRIL  257 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCCC--CCSEEEEESCG
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCCC--CCcEEEEehhc
Confidence            46779999999999999999986  568999999 44554  4444445666689999999985444  89999997666


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      +..
T Consensus       258 h~~  260 (348)
T 3lst_A          258 HNW  260 (348)
T ss_dssp             GGS
T ss_pred             cCC
Confidence            543

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.40  E-value=1.6e-06  Score=79.23  Aligned_cols=60  Identities=23%  Similarity=0.351  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHh-cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcC
Q psy15742        176 PEKVAQHIASR-CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYG  235 (342)
Q Consensus       176 ~e~~~~~i~~~-~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~g  235 (342)
                      |+.+++.+... ..+|+.|||+|||+|++++.+++.|.+++|+|+++.+++.|++|++...
T Consensus       221 p~~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          221 PLELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             CHHHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            35555555544 4578899999999999999999999999999999999999999997653

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.36  E-value=4.4e-06  Score=75.76  Aligned_cols=109  Identities=12%  Similarity=0.069  Sum_probs=80.9

Q ss_pred             hcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc--C-C-CCcEEEEEccccccCC--CCCcc
Q psy15742        186 RCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY--G-V-SHKIQFIQGDFFALAP--SLQGD  257 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~--g-l-~~~i~~~~~D~~~~~~--~~~~D  257 (342)
                      ..+..++||=+|.|.|+.+.++++.  ..+|+.||+|+..++.|++.+...  + + +++++++.+|+.++..  ..+||
T Consensus        80 ~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yD  159 (294)
T 3o4f_A           80 AHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFD  159 (294)
T ss_dssp             HSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred             hCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCC
Confidence            3455789999999999999999986  579999999999999999987432  2 1 3589999999999873  35899


Q ss_pred             EEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        258 VVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       258 ~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      +|++|.+-..    .  .. ..+.    ....+..+.+.+.+++++..
T Consensus       160 vIi~D~~dp~----~--~~-~~L~----t~eFy~~~~~~L~p~Gv~v~  196 (294)
T 3o4f_A          160 VIISDCTDPI----G--PG-ESLF----TSAFYEGCKRCLNPGGIFVA  196 (294)
T ss_dssp             EEEESCCCCC----C--TT-CCSS----CCHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEeCCCcC----C--Cc-hhhc----CHHHHHHHHHHhCCCCEEEE
Confidence            9999976211    1  00 1111    22255567777888888775

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.35  E-value=8.4e-07  Score=80.68  Aligned_cols=62  Identities=15%  Similarity=0.091  Sum_probs=47.9

Q ss_pred             cCCCCeEEeccCCC------cHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE-EEccccccCCCCCc
Q psy15742        187 CKASDVVIDGFCGC------GGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQF-IQGDFFALAPSLQG  256 (342)
Q Consensus       187 ~~~~~~vLDlgcGt------G~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~-~~~D~~~~~~~~~~  256 (342)
                      ++++.+|||+|||+      |+  ..+++.   +.+|+|+|+|+.             + .++++ +++|+.+.....+|
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~~~~~f  124 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVHTANKW  124 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCCCSSCE
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCCccCcc
Confidence            45688999999944      77  333443   479999999997             1 25788 99999987655689


Q ss_pred             cEEEEcCC
Q psy15742        257 DVVFLSPP  264 (342)
Q Consensus       257 D~Ii~nPP  264 (342)
                      |+|++|++
T Consensus       125 D~Vvsn~~  132 (290)
T 2xyq_A          125 DLIISDMY  132 (290)
T ss_dssp             EEEEECCC
T ss_pred             cEEEEcCC
Confidence            99999975

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.32  E-value=1.7e-06  Score=77.40  Aligned_cols=62  Identities=19%  Similarity=0.353  Sum_probs=51.5

Q ss_pred             CHHHHHHHHHHh-cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC
Q psy15742        175 TPEKVAQHIASR-CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV  236 (342)
Q Consensus       175 ~~e~~~~~i~~~-~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl  236 (342)
                      -|..+++.+... .++|+.|||+|||+|+.++.+++.|.+++|+|+++.+++.|++|++.+++
T Consensus       197 ~p~~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          197 KPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             CCHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhccC
Confidence            456666665544 56889999999999999999999999999999999999999999987664

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.32  E-value=1.2e-06  Score=87.60  Aligned_cols=74  Identities=12%  Similarity=0.139  Sum_probs=61.5

Q ss_pred             CCeEEeccCCCcHHH---HHHHHh-CC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        190 SDVVIDGFCGCGGNT---IQFAAV-CQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~---~~~a~~-~~--~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      +..|+|+|||+|-++   +.+++. +.  +|++||.|+ +...|++..+.||+.++|+++++|+.++....++|+||+..
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEw  436 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSEL  436 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEc
Confidence            357999999999994   444444 33  689999998 66688999999999999999999999987667999999965


Q ss_pred             C
Q psy15742        264 P  264 (342)
Q Consensus       264 P  264 (342)
                      -
T Consensus       437 M  437 (637)
T 4gqb_A          437 L  437 (637)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.28  E-value=2.5e-07  Score=87.25  Aligned_cols=76  Identities=18%  Similarity=0.103  Sum_probs=56.9

Q ss_pred             HHHHHHHH-hcCCCCeEEeccCC------CcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q psy15742        178 KVAQHIAS-RCKASDVVIDGFCG------CGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF  247 (342)
Q Consensus       178 ~~~~~i~~-~~~~~~~vLDlgcG------tG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~  247 (342)
                      .+.+.+.. ...++.+|||+|||      +|+.++.+++.   +.+|+|+|+|+.|.        . . .++++++++|+
T Consensus       204 ~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~-~-~~rI~fv~GDa  273 (419)
T 3sso_A          204 PHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V-D-ELRIRTIQGDQ  273 (419)
T ss_dssp             HHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G-C-BTTEEEEECCT
T ss_pred             HHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h-c-CCCcEEEEecc
Confidence            34444443 34567899999999      78888887764   67999999999872        1 1 24899999999


Q ss_pred             cccC-C------CCCccEEEEcC
Q psy15742        248 FALA-P------SLQGDVVFLSP  263 (342)
Q Consensus       248 ~~~~-~------~~~~D~Ii~nP  263 (342)
                      .+.+ .      .++||+|++|-
T Consensus       274 ~dlpf~~~l~~~d~sFDlVisdg  296 (419)
T 3sso_A          274 NDAEFLDRIARRYGPFDIVIDDG  296 (419)
T ss_dssp             TCHHHHHHHHHHHCCEEEEEECS
T ss_pred             cccchhhhhhcccCCccEEEECC
Confidence            8753 2      46899999974

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=98.21  E-value=3.3e-06  Score=79.68  Aligned_cols=105  Identities=19%  Similarity=0.203  Sum_probs=72.4

Q ss_pred             CeEEeccCCCcHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---------CCCCccEEE
Q psy15742        191 DVVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------PSLQGDVVF  260 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~~~~-v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---------~~~~~D~Ii  260 (342)
                      .+++|+|||.|++++.+.+.|.+ |.++|+++.+++..+.|..      +..++++|+.++.         ....+|+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~   76 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDGII   76 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence            47999999999999999888765 5699999999999998863      4678899998764         235799999


Q ss_pred             EcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceee
Q psy15742        261 LSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYY  304 (342)
Q Consensus       261 ~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (342)
                      .+||+.+.+..+.. ...+- .+ .=...++++...+.|..+++
T Consensus        77 ggpPCQ~fS~ag~~-~~~d~-r~-~L~~~~~~~v~~~~P~~~v~  117 (376)
T 3g7u_A           77 GGPPCQGFSSIGKG-NPDDS-RN-QLYMHFYRLVSELQPLFFLA  117 (376)
T ss_dssp             ECCCCCTTC--------CHH-HH-HHHHHHHHHHHHHCCSEEEE
T ss_pred             ecCCCCCcccccCC-CCCCc-hH-HHHHHHHHHHHHhCCCEEEE
Confidence            99999876544421 11100 00 00114556666667766655

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.20  E-value=2.3e-06  Score=85.61  Aligned_cols=74  Identities=14%  Similarity=0.052  Sum_probs=58.6

Q ss_pred             CCeEEeccCCCcHHHH---HHHHh-C-----------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--
Q psy15742        190 SDVVIDGFCGCGGNTI---QFAAV-C-----------QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--  252 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~---~~a~~-~-----------~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--  252 (342)
                      +..|+|+|||+|.++.   .+++. +           .+|+|||.|+.++..++.... +|+.++|+++.+|+.++..  
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            4589999999999964   33332 2           399999999988766555544 8888889999999999853  


Q ss_pred             ----CCCccEEEEcCC
Q psy15742        253 ----SLQGDVVFLSPP  264 (342)
Q Consensus       253 ----~~~~D~Ii~nPP  264 (342)
                          ..++|+||+...
T Consensus       489 ~~~~~ekVDIIVSElm  504 (745)
T 3ua3_A          489 KDRGFEQPDIIVSELL  504 (745)
T ss_dssp             HHTTCCCCSEEEECCC
T ss_pred             ccCCCCcccEEEEecc
Confidence                568999999776

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.17  E-value=1.6e-06  Score=77.84  Aligned_cols=78  Identities=18%  Similarity=0.101  Sum_probs=57.0

Q ss_pred             CCeEEeccCCC--cHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---C----CCCcc
Q psy15742        190 SDVVIDGFCGC--GGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---P----SLQGD  257 (342)
Q Consensus       190 ~~~vLDlgcGt--G~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~----~~~~D  257 (342)
                      ..+|||+|||+  |.+...+++.   +.+|+++|.|+.|++.|+.++...+. .+++++++|+.+..   .    ...||
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~-~~~~~v~aD~~~~~~~l~~~~~~~~~D  157 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE-GRTAYVEADMLDPASILDAPELRDTLD  157 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS-SEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC-CcEEEEEecccChhhhhcccccccccC
Confidence            36899999997  4445555543   68999999999999999999865432 47999999998852   1    23455


Q ss_pred             -----EEEEcCCCCCC
Q psy15742        258 -----VVFLSPPWGGP  268 (342)
Q Consensus       258 -----~Ii~nPP~~~~  268 (342)
                           .|++|--.+..
T Consensus       158 ~~~p~av~~~avLH~l  173 (277)
T 3giw_A          158 LTRPVALTVIAIVHFV  173 (277)
T ss_dssp             TTSCCEEEEESCGGGS
T ss_pred             cCCcchHHhhhhHhcC
Confidence                 57776655544

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.17  E-value=1.5e-06  Score=81.18  Aligned_cols=72  Identities=19%  Similarity=0.267  Sum_probs=58.3

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP  264 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP  264 (342)
                      ++++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.|++      . ++++++.+|+.+..+  .||+|++.-.
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~~p--~~D~v~~~~~  255 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFTSIP--NADAVLLKYI  255 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTTCCC--CCSEEEEESC
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------C-CCcEEEeccccCCCC--CccEEEeehh
Confidence            346789999999999999999986  679999999 999988764      1 359999999987433  3999999766


Q ss_pred             CCCC
Q psy15742        265 WGGP  268 (342)
Q Consensus       265 ~~~~  268 (342)
                      .+..
T Consensus       256 lh~~  259 (352)
T 1fp2_A          256 LHNW  259 (352)
T ss_dssp             GGGS
T ss_pred             hccC
Confidence            5543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.13  E-value=2.6e-06  Score=80.19  Aligned_cols=70  Identities=20%  Similarity=0.280  Sum_probs=56.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||+|.++..+++.  ..+++++|+ +.+++.|+.+       ++++++.+|+++..+..  |+|++.-..
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~p~~--D~v~~~~vl  271 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDGVPKG--DAIFIKWIC  271 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCCC--SEEEEESCG
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCCCCCC--CEEEEechh
Confidence            35679999999999999999986  678999999 8888776642       47999999998744433  999997665


Q ss_pred             CC
Q psy15742        266 GG  267 (342)
Q Consensus       266 ~~  267 (342)
                      +.
T Consensus       272 h~  273 (368)
T 3reo_A          272 HD  273 (368)
T ss_dssp             GG
T ss_pred             hc
Confidence            53

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.08  E-value=8e-06  Score=76.11  Aligned_cols=72  Identities=18%  Similarity=0.127  Sum_probs=57.2

Q ss_pred             HhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEcC
Q psy15742        185 SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSP  263 (342)
Q Consensus       185 ~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~nP  263 (342)
                      ..+++|.+++|+||++|+++..+++.+.+|+|||..+ +-    ..+.  .. ++++++++|++.+.+ ...+|+|+||-
T Consensus       207 ~~l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~----~~l~--~~-~~V~~~~~d~~~~~~~~~~~D~vvsDm  278 (375)
T 4auk_A          207 ERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MA----QSLM--DT-GQVTWLREDGFKFRPTRSNISWMVCDM  278 (375)
T ss_dssp             HHSCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CC----HHHH--TT-TCEEEECSCTTTCCCCSSCEEEEEECC
T ss_pred             ccCCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cC----hhhc--cC-CCeEEEeCccccccCCCCCcCEEEEcC
Confidence            3467899999999999999999999999999999764 11    1121  11 479999999998865 45899999985


Q ss_pred             C
Q psy15742        264 P  264 (342)
Q Consensus       264 P  264 (342)
                      -
T Consensus       279 ~  279 (375)
T 4auk_A          279 V  279 (375)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.08  E-value=9e-06  Score=76.02  Aligned_cols=73  Identities=23%  Similarity=0.306  Sum_probs=59.5

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      .+..+|+|+|||+|.++..+++.  ..+++..|. |.+++.|++++...+ .++++++.+|+++.+. ..+|++++.=
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~-~~~D~~~~~~  252 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL-PEADLYILAR  252 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCC-CCCSEEEEES
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCC-CCceEEEeee
Confidence            35679999999999999999987  678888887 889999999987655 4699999999987543 3589999843

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=98.07  E-value=1.6e-05  Score=73.49  Aligned_cols=75  Identities=19%  Similarity=0.182  Sum_probs=60.7

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEEEcCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSPPWG  266 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~-v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii~nPP~~  266 (342)
                      +.+++|+|||+|++++.+.+.|.+ +.++|+++.+++..+.|....     .   ++|+.++...  ..+|+|+.+||+.
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~~~~~D~l~~gpPCQ   82 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKTIPDHDILCAGFPCQ   82 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGGSCCCSEEEEECCCT
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhhCCCCCEEEECCCCC
Confidence            468999999999999999888654 778999999999999997421     1   6888876522  3699999999999


Q ss_pred             CCcccc
Q psy15742        267 GPEYAR  272 (342)
Q Consensus       267 ~~~~~~  272 (342)
                      +.+..+
T Consensus        83 ~fS~ag   88 (327)
T 2c7p_A           83 AFSISG   88 (327)
T ss_dssp             TTCTTS
T ss_pred             Ccchhc
Confidence            876554

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.04  E-value=8.6e-06  Score=76.47  Aligned_cols=69  Identities=22%  Similarity=0.303  Sum_probs=55.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      +++.+|||+|||+|.++..+++.  ..+++++|+ +.+++.|+.+       ++++++.+|+++..+. . |+|++.--.
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-~-D~v~~~~vl  269 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFKEVPS-G-DTILMKWIL  269 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCC-C-SEEEEESCG
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCCCCCC-C-CEEEehHHh
Confidence            45689999999999999999986  678999999 8888776642       4899999999884343 3 999986554


Q ss_pred             C
Q psy15742        266 G  266 (342)
Q Consensus       266 ~  266 (342)
                      +
T Consensus       270 h  270 (364)
T 3p9c_A          270 H  270 (364)
T ss_dssp             G
T ss_pred             c
Confidence            4

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.02  E-value=4.7e-06  Score=78.42  Aligned_cols=71  Identities=25%  Similarity=0.341  Sum_probs=57.3

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      +++.+|||+|||+|.++..+++.  ..+++++|+ +.+++.|++      . ++++++.+|+.+..+.  ||+|++.-..
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~~~~--~D~v~~~~~l  277 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFASVPQ--GDAMILKAVC  277 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTTCCCC--EEEEEEESSG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCcccCCCC--CCEEEEeccc
Confidence            45789999999999999999987  568899999 999987764      1 3699999999884333  9999997665


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      +..
T Consensus       278 h~~  280 (372)
T 1fp1_D          278 HNW  280 (372)
T ss_dssp             GGS
T ss_pred             ccC
Confidence            543

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=98.00  E-value=2.4e-06  Score=78.98  Aligned_cols=78  Identities=15%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             CCHHHHHHHHHH-hcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC
Q psy15742        174 VTPEKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP  252 (342)
Q Consensus       174 ~~~e~~~~~i~~-~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~  252 (342)
                      .-|..+++.+.. ..++|+.|||++||+|+.++.+.+.|.+.+|+|+++.+++.|+.+++..+.  ....++.|+.+++.
T Consensus       236 ~kp~~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~~--~~~~~~~~~~~i~~  313 (323)
T 1boo_A          236 RFPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNI--SEEKITDIYNRILN  313 (323)
T ss_dssp             CCCTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSCS--CHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHc
Confidence            344556666554 457899999999999999999999999999999999999999999987775  45666777776654


Q ss_pred             C
Q psy15742        253 S  253 (342)
Q Consensus       253 ~  253 (342)
                      .
T Consensus       314 ~  314 (323)
T 1boo_A          314 G  314 (323)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.94  E-value=9e-06  Score=76.01  Aligned_cols=71  Identities=23%  Similarity=0.283  Sum_probs=57.2

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      +++.+|||+|||+|.++..+++.  ..+++++|+ +.+++.|+.      . .+++++.+|+.+..+  .||+|++.-.+
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~~~--~~D~v~~~~vl  261 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFKSIP--SADAVLLKWVL  261 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTTCCC--CCSEEEEESCG
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-CCcEEEeCccCCCCC--CceEEEEcccc
Confidence            45679999999999999999987  568999999 788877654      2 369999999988323  59999997766


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      +..
T Consensus       262 h~~  264 (358)
T 1zg3_A          262 HDW  264 (358)
T ss_dssp             GGS
T ss_pred             cCC
Confidence            543

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.86  E-value=4.9e-05  Score=68.64  Aligned_cols=75  Identities=16%  Similarity=0.139  Sum_probs=61.4

Q ss_pred             CCeEEeccCCCcHHHHHHHHh-------CCEEEEEeCCH--------------------------HHHHHHHHHHHHcCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV-------CQKVISIDIDP--------------------------AKLRLAQHNASVYGV  236 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~-------~~~v~gvD~s~--------------------------~~l~~a~~n~~~~gl  236 (342)
                      .+.|||+|+..|..++.+|..       +.+|+++|..+                          ..++.+++|++..|+
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            459999999999999988753       56899999642                          147789999999999


Q ss_pred             C-CcEEEEEccccccCC---CCCccEEEEcCC
Q psy15742        237 S-HKIQFIQGDFFALAP---SLQGDVVFLSPP  264 (342)
Q Consensus       237 ~-~~i~~~~~D~~~~~~---~~~~D~Ii~nPP  264 (342)
                      . ++++++.||+.+.++   ..+||+|++|--
T Consensus       187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD  218 (282)
T 2wk1_A          187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD  218 (282)
T ss_dssp             CSTTEEEEESCHHHHSTTCCCCCEEEEEECCC
T ss_pred             CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC
Confidence            4 799999999988653   357999999853

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.86  E-value=4.5e-05  Score=70.68  Aligned_cols=76  Identities=18%  Similarity=0.341  Sum_probs=61.4

Q ss_pred             CeEEeccCCCcHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----CCCccEEEEcC
Q psy15742        191 DVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFLSP  263 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~~~---~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----~~~~D~Ii~nP  263 (342)
                      -+++|++||.|+++..+.+.|.   .|.++|+++.+.+..+.|..      ...++.+|+.++..    ...+|+++..|
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~~~~~D~l~ggp   77 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIKKWNVDTILMSP   77 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhccCCCCEEEecC
Confidence            3799999999999999988763   57899999999999988863      34567889887752    23699999999


Q ss_pred             CCCCCcccc
Q psy15742        264 PWGGPEYAR  272 (342)
Q Consensus       264 P~~~~~~~~  272 (342)
                      |+.+.+..+
T Consensus        78 PCQ~fS~ag   86 (333)
T 4h0n_A           78 PCQPFTRNG   86 (333)
T ss_dssp             CCCCSEETT
T ss_pred             CCcchhhhh
Confidence            999876544

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.79  E-value=6.3e-05  Score=69.04  Aligned_cols=77  Identities=25%  Similarity=0.392  Sum_probs=62.9

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---C----CCCc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---P----SLQG  256 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~----~~~~  256 (342)
                      +++|+.++|.+||.|+.+..+++.   ..+|+|+|.|+.+++.|+ ++  .  .++++++++++.++.   +    .+++
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~--~~Rv~lv~~nF~~l~~~L~~~g~~~~v  129 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D--DPRFSIIHGPFSALGEYVAERDLIGKI  129 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C--CTTEEEEESCGGGHHHHHHHTTCTTCE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c--CCcEEEEeCCHHHHHHHHHhcCCCCcc
Confidence            357889999999999999999876   469999999999999984 44  2  358999999988763   1    1269


Q ss_pred             cEEEEcCCCCCC
Q psy15742        257 DVVFLSPPWGGP  268 (342)
Q Consensus       257 D~Ii~nPP~~~~  268 (342)
                      |.|+.|..++..
T Consensus       130 DgILfDLGVSS~  141 (347)
T 3tka_A          130 DGILLDLGVSSP  141 (347)
T ss_dssp             EEEEEECSCCHH
T ss_pred             cEEEECCccCHH
Confidence            999999888753

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=97.77  E-value=9.5e-05  Score=67.25  Aligned_cols=78  Identities=12%  Similarity=0.074  Sum_probs=62.7

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCE---EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----CCCccEEE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQK---VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----SLQGDVVF  260 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~---v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----~~~~D~Ii  260 (342)
                      .+.+++|++||.|++++.+.+.|.+   |.++|+++.+++..+.|..      ...++.+|+.++..     ...+|+++
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~~~~~Dll~   88 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQEWGPFDLVI   88 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHHTCCCSEEE
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcccCCcCEEE
Confidence            3568999999999999999888755   4899999999988888752      34678899988752     13699999


Q ss_pred             EcCCCCCCcccc
Q psy15742        261 LSPPWGGPEYAR  272 (342)
Q Consensus       261 ~nPP~~~~~~~~  272 (342)
                      ..||+.+.+..+
T Consensus        89 ggpPCQ~fS~ag  100 (295)
T 2qrv_A           89 GGSPCNDLSIVN  100 (295)
T ss_dssp             ECCCCGGGBTTC
T ss_pred             ecCCCccccccC
Confidence            999998765543

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.76  E-value=4e-05  Score=70.74  Aligned_cols=74  Identities=19%  Similarity=0.286  Sum_probs=60.6

Q ss_pred             eEEeccCCCcHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEEEcCCCCCC
Q psy15742        192 VVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSPPWGGP  268 (342)
Q Consensus       192 ~vLDlgcGtG~~~~~~a~~~~~-v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii~nPP~~~~  268 (342)
                      +|+|++||.|++++.+.+.|.+ +.++|+++.+++.-+.|.       ...++.+|+.++...  ...|+++..||+.+.
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~-------~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~f   74 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-------SAKLIKGDISKISSDEFPKCDGIIGGPPSQSW   74 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC-------CSEEEESCGGGCCGGGSCCCSEEECCCCGGGT
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-------CCCcccCChhhCCHhhCCcccEEEecCCCCCc
Confidence            6999999999999999887665 469999999999888885       236789999887532  379999999999876


Q ss_pred             cccc
Q psy15742        269 EYAR  272 (342)
Q Consensus       269 ~~~~  272 (342)
                      +..+
T Consensus        75 S~ag   78 (331)
T 3ubt_Y           75 SEGG   78 (331)
T ss_dssp             EETT
T ss_pred             CCCC
Confidence            6544

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.74  E-value=0.00012  Score=68.25  Aligned_cols=75  Identities=11%  Similarity=0.083  Sum_probs=60.4

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------CCCC------
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQ------  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~~~~------  255 (342)
                      +..|||+|.|.|.++..++..  +.+|+++|+|+..+...++.. .   .++++++++|++++.      ....      
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~l~~~~~~~l~~~~~l~~~~~  134 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDPYDWSTYSNLIDEERIFVPEV  134 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCTTCHHHHHHHTTTTCSSCCCC
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCccchhhHHHhhcccccccccc
Confidence            578999999999999999986  679999999999999988876 2   258999999998763      1110      


Q ss_pred             -----c---cEEEEcCCCCCC
Q psy15742        256 -----G---DVVFLSPPWGGP  268 (342)
Q Consensus       256 -----~---D~Ii~nPP~~~~  268 (342)
                           +   =.|+.|-||...
T Consensus       135 ~~~~~~~~~~~vvaNLPYnIs  155 (353)
T 1i4w_A          135 QSSDHINDKFLTVANVTGEGS  155 (353)
T ss_dssp             CCTTSEEEEEEEEEECCSTTH
T ss_pred             cccccCCCceEEEEECCCchH
Confidence                 1   178999999654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.72  E-value=7.8e-05  Score=68.65  Aligned_cols=61  Identities=18%  Similarity=0.198  Sum_probs=49.2

Q ss_pred             CHHHHHHHHHH-hcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCH---HHHHHHHHHHHHcC
Q psy15742        175 TPEKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP---AKLRLAQHNASVYG  235 (342)
Q Consensus       175 ~~e~~~~~i~~-~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~---~~l~~a~~n~~~~g  235 (342)
                      -|..+++.+.. ..++|+.|||++||+|+.++.+.+.+.+.+|+|+++   .+++.|+++++..|
T Consensus       227 kp~~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          227 KPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            34556565554 456899999999999999999999999999999999   99999999987655

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.69  E-value=2.9e-05  Score=69.27  Aligned_cols=75  Identities=23%  Similarity=0.210  Sum_probs=54.5

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-------C-------CEEEEEeCCH---HHHH-----------HHHHHHHHc------
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-------C-------QKVISIDIDP---AKLR-----------LAQHNASVY------  234 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-------~-------~~v~gvD~s~---~~l~-----------~a~~n~~~~------  234 (342)
                      ++.+|||+|+|+|..++.+++.       .       .+++++|..+   +.+.           .|+.+++.+      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            3568999999999998886543       1       4899999876   4444           677776642      


Q ss_pred             ----CCC---CcEEEEEccccccCCC------CCccEEEEcC
Q psy15742        235 ----GVS---HKIQFIQGDFFALAPS------LQGDVVFLSP  263 (342)
Q Consensus       235 ----gl~---~~i~~~~~D~~~~~~~------~~~D~Ii~nP  263 (342)
                          .+.   .+++++.+|+.+..+.      ..||+|+.||
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~  181 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG  181 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC
Confidence                111   3678999999885432      2799999997

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.69  E-value=7.5e-05  Score=68.96  Aligned_cols=72  Identities=22%  Similarity=0.295  Sum_probs=58.4

Q ss_pred             CCeEEeccCCCcHHHHHHHHhC---CEE-EEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----CCCccEEEE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVC---QKV-ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFL  261 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~---~~v-~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----~~~~D~Ii~  261 (342)
                      .-+++|++||.|+++..+.+.|   ..| .++|+++.+++..+.|..      .. ++++|+.++..    ...+|+++.
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~------~~-~~~~DI~~~~~~~i~~~~~Dil~g   82 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK------EE-VQVKNLDSISIKQIESLNCNTWFM   82 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC------CC-CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC------CC-cccCChhhcCHHHhccCCCCEEEe
Confidence            4589999999999999998876   356 699999999999999973      11 56788887642    226899999


Q ss_pred             cCCCCCC
Q psy15742        262 SPPWGGP  268 (342)
Q Consensus       262 nPP~~~~  268 (342)
                      .||+.+-
T Consensus        83 gpPCQ~f   89 (327)
T 3qv2_A           83 SPPCQPY   89 (327)
T ss_dssp             CCCCTTC
T ss_pred             cCCccCc
Confidence            9998876

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.68  E-value=2e-05  Score=65.66  Aligned_cols=63  Identities=10%  Similarity=-0.031  Sum_probs=50.5

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEEEc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLS  262 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii~n  262 (342)
                      +++|.+|||+|||+              +++|+|+.|++.|+++..     .+++++++|+.+++    ++++||+|+++
T Consensus        10 ~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~V~~~   70 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHKESSFDIILSG   70 (176)
T ss_dssp             CCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred             CCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCCCCCEeEEEEC
Confidence            46789999999996              249999999999998864     24889999998875    35689999997


Q ss_pred             CCCCCC
Q psy15742        263 PPWGGP  268 (342)
Q Consensus       263 PP~~~~  268 (342)
                      -..+..
T Consensus        71 ~~l~~~   76 (176)
T 2ld4_A           71 LVPGST   76 (176)
T ss_dssp             CSTTCC
T ss_pred             Chhhhc
Confidence            555543

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.67  E-value=4.7e-05  Score=71.22  Aligned_cols=76  Identities=14%  Similarity=0.070  Sum_probs=61.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHc--C-C----CCcEEEEEccccccCC-----CCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVY--G-V----SHKIQFIQGDFFALAP-----SLQ  255 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~--g-l----~~~i~~~~~D~~~~~~-----~~~  255 (342)
                      ++++||=+|.|.|+.+.++.+. ..+|+.||+|+..+++|++.+...  + +    .++++++.+|+.++..     ..+
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            4679999999999999999886 678999999999999999876321  1 1    1358999999988762     357


Q ss_pred             ccEEEEcCC
Q psy15742        256 GDVVFLSPP  264 (342)
Q Consensus       256 ~D~Ii~nPP  264 (342)
                      ||+|++|.+
T Consensus       285 yDvIIvDl~  293 (381)
T 3c6k_A          285 FDYVINDLT  293 (381)
T ss_dssp             EEEEEEECC
T ss_pred             eeEEEECCC
Confidence            999999955

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.54  E-value=0.00012  Score=65.45  Aligned_cols=75  Identities=21%  Similarity=0.197  Sum_probs=52.5

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccccCCCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG-DFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~-D~~~~~~~~~~D~Ii~nP  263 (342)
                      ++++.+|+|+||++|+++.+++..  +..|+|+|+-..--+.= ...+..+- +-+.+..+ |+....+ .++|+|+||-
T Consensus        92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w-~lV~~~~~~Dv~~l~~-~~~D~ivcDi  168 (321)
T 3lkz_A           92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGW-NIVTMKSGVDVFYRPS-ECCDTLLCDI  168 (321)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTG-GGEEEECSCCTTSSCC-CCCSEEEECC
T ss_pred             CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCC-cceEEEeccCHhhCCC-CCCCEEEEEC
Confidence            567889999999999999988876  45799999976411000 00001111 24788888 8877665 5799999997


Q ss_pred             C
Q psy15742        264 P  264 (342)
Q Consensus       264 P  264 (342)
                      -
T Consensus       169 g  169 (321)
T 3lkz_A          169 G  169 (321)
T ss_dssp             C
T ss_pred             c
Confidence            7

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.52  E-value=0.00011  Score=63.70  Aligned_cols=74  Identities=24%  Similarity=0.314  Sum_probs=54.0

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccccCCCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG-DFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~-D~~~~~~~~~~D~Ii~nP  263 (342)
                      ++++.+|+|+||++|+++..++..  +.+|+|+|+-..--+.- ...+.+|- +.++|..+ |++...+ .++|+|+||-
T Consensus        76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gw-n~v~fk~gvDv~~~~~-~~~DtllcDI  152 (267)
T 3p8z_A           76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGW-NIVKLMSGKDVFYLPP-EKCDTLLCDI  152 (267)
T ss_dssp             SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTT-TSEEEECSCCGGGCCC-CCCSEEEECC
T ss_pred             CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCc-CceEEEeccceeecCC-ccccEEEEec
Confidence            467889999999999999988876  46799999876422100 00122343 47999999 9876655 6799999994

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=97.21  E-value=0.00041  Score=67.21  Aligned_cols=80  Identities=19%  Similarity=0.201  Sum_probs=59.7

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----------------
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----------------  252 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~-v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----------------  252 (342)
                      .-+++|+|||.|++++.+.+.|.+ |.++|+++.+++.-+.|...   .+...++++|+.++..                
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~---~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~  164 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYC---DPATHHFNEDIRDITLSHQEGVSDEAAAEHIR  164 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCC---CTTTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhccc---CCCcceeccchhhhhhccccccchhhHHhhhh
Confidence            358999999999999999877655 78999999999888888621   1234577889877641                


Q ss_pred             --CCCccEEEEcCCCCCCcccc
Q psy15742        253 --SLQGDVVFLSPPWGGPEYAR  272 (342)
Q Consensus       253 --~~~~D~Ii~nPP~~~~~~~~  272 (342)
                        ...+|+++..||+.+.+..+
T Consensus       165 ~~~~~~Dvl~gGpPCQ~FS~AG  186 (482)
T 3me5_A          165 QHIPEHDVLLAGFPCQPFSLAG  186 (482)
T ss_dssp             HHSCCCSEEEEECCCCCC----
T ss_pred             hcCCCCCEEEecCCCcchhhhC
Confidence              13689999999998765443

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.03  E-value=0.00011  Score=65.61  Aligned_cols=75  Identities=19%  Similarity=0.121  Sum_probs=46.1

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-CCCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-APSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~-~~~~~~D~Ii~nP  263 (342)
                      ++++.+|||+|||+|+++..+++.  ...++|+|+...+...... ....|.  ++..+.+++... .+..+||+|++|-
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-~~~~g~--~ii~~~~~~dv~~l~~~~~DlVlsD~  148 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-VQSLGW--NIITFKDKTDIHRLEPVKCDTLLCDI  148 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-CCBTTG--GGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-cCcCCC--CeEEEeccceehhcCCCCccEEEecC
Confidence            456889999999999999998865  4578888887432100000 000111  344455554221 2446899999985


Q ss_pred             C
Q psy15742        264 P  264 (342)
Q Consensus       264 P  264 (342)
                      .
T Consensus       149 a  149 (277)
T 3evf_A          149 G  149 (277)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.02  E-value=0.00017  Score=64.40  Aligned_cols=74  Identities=20%  Similarity=0.342  Sum_probs=47.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc--cccccCCCCCccEEEEc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG--DFFALAPSLQGDVVFLS  262 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~--D~~~~~~~~~~D~Ii~n  262 (342)
                      ++++.+|||+|||.|+++..+++.  ..+|+|+|+...+...+... ...+.  ++.....  |+..+ +..++|+|+||
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g~--~ii~~~~~~dv~~l-~~~~~DvVLSD  163 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLGW--NLIRFKDKTDVFNM-EVIPGDTLLCD  163 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTTG--GGEEEECSCCGGGS-CCCCCSEEEEC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCCC--ceEEeeCCcchhhc-CCCCcCEEEec
Confidence            467889999999999999998864  45789999976432211110 00121  3333332  54443 44689999999


Q ss_pred             CC
Q psy15742        263 PP  264 (342)
Q Consensus       263 PP  264 (342)
                      -.
T Consensus       164 mA  165 (282)
T 3gcz_A          164 IG  165 (282)
T ss_dssp             CC
T ss_pred             Cc
Confidence            44

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.75  E-value=0.00022  Score=62.70  Aligned_cols=72  Identities=22%  Similarity=0.252  Sum_probs=45.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEEEc-cccccCCCCCccEEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASV--YGVSHKIQFIQG-DFFALAPSLQGDVVFL  261 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~--~gl~~~i~~~~~-D~~~~~~~~~~D~Ii~  261 (342)
                      ++++.+|+|+||+.|+.+..+++.  ...|.|.++.... ..  .-+..  .|+ +-++|.++ |+++.. ..++|+|+|
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~--~P~~~~~~Gv-~~i~~~~G~Df~~~~-~~~~DvVLS  145 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HE--EPMLMQSYGW-NIVTMKSGVDVFYKP-SEISDTLLC  145 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SC--CCCCCCSTTG-GGEEEECSCCGGGSC-CCCCSEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-cc--CCCcccCCCc-eEEEeeccCCccCCC-CCCCCEEEe
Confidence            578999999999999999999986  3244444443220 00  00000  121 12356657 998853 447999999


Q ss_pred             cC
Q psy15742        262 SP  263 (342)
Q Consensus       262 nP  263 (342)
                      |-
T Consensus       146 DM  147 (269)
T 2px2_A          146 DI  147 (269)
T ss_dssp             CC
T ss_pred             CC
Confidence            94

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=96.64  E-value=0.0041  Score=65.21  Aligned_cols=77  Identities=18%  Similarity=0.202  Sum_probs=59.3

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-----------------
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-----------------  250 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~--~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~-----------------  250 (342)
                      .-+++|+|||.|++++.+.+.|.  .+.++|+++.+.+.-+.|..      +..++.+|+.++                 
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~~di~~~~~~~l  613 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP------GSTVFTEDCNILLKLVMAGETTNSRGQRL  613 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT------TSEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred             CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC------CCccccccHHHHhhhccchhhhhhhhhhc
Confidence            34799999999999999988886  57899999999998888852      455666665332                 


Q ss_pred             CCCCCccEEEEcCCCCCCcccc
Q psy15742        251 APSLQGDVVFLSPPWGGPEYAR  272 (342)
Q Consensus       251 ~~~~~~D~Ii~nPP~~~~~~~~  272 (342)
                      +..+.+|+|+..||+.+.+..+
T Consensus       614 p~~~~vDll~GGpPCQ~FS~ag  635 (1002)
T 3swr_A          614 PQKGDVEMLCGGPPCQGFSGMN  635 (1002)
T ss_dssp             CCTTTCSEEEECCCCTTCCSSS
T ss_pred             ccCCCeeEEEEcCCCcchhhhC
Confidence            1234799999999998765443

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=96.58  E-value=0.0047  Score=63.63  Aligned_cols=42  Identities=17%  Similarity=0.363  Sum_probs=35.7

Q ss_pred             CCeEEeccCCCcHHHHHHHHhC-------CEEEEEeCCHHHHHHHHHHH
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVC-------QKVISIDIDPAKLRLAQHNA  231 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~-------~~v~gvD~s~~~l~~a~~n~  231 (342)
                      ..+|+|+|||.|+++.-+.+.|       .-+.++|+++.+++.-+.|.
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            3479999999999998887654       35789999999999988885

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.47  E-value=0.0071  Score=57.44  Aligned_cols=61  Identities=15%  Similarity=0.073  Sum_probs=50.1

Q ss_pred             CCCCeEEeccCCCcHHHHHHH-Hh-C--CEEEEEeCCHHHHHHHHHHHHH--cC-CCCcEEEEEcccc
Q psy15742        188 KASDVVIDGFCGCGGNTIQFA-AV-C--QKVISIDIDPAKLRLAQHNASV--YG-VSHKIQFIQGDFF  248 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a-~~-~--~~v~gvD~s~~~l~~a~~n~~~--~g-l~~~i~~~~~D~~  248 (342)
                      +++..|+|+||+.|..++.++ +. +  .+|+++|.+|...+..++|++.  |+ .++++++++.-+-
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            578899999999999999988 43 2  6999999999999999999998  43 3257877765443

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=96.24  E-value=0.019  Score=54.22  Aligned_cols=82  Identities=11%  Similarity=-0.007  Sum_probs=58.4

Q ss_pred             CeEEeccCCCcHHHHHHHHhC---CE----EEEEeCCHHHHHHHHHHHHHcCCC--CcE---------------------
Q psy15742        191 DVVIDGFCGCGGNTIQFAAVC---QK----VISIDIDPAKLRLAQHNASVYGVS--HKI---------------------  240 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~~---~~----v~gvD~s~~~l~~a~~n~~~~gl~--~~i---------------------  240 (342)
                      -+|+|+|||.|+++..+.+.|   .-    |.++|+++.+++.-+.|.......  +.+                     
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~i~   90 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYGIK   90 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHHHH
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccccccc
Confidence            489999999999999987765   23    888999999999988887532100  000                     


Q ss_pred             --------EE---------EEccccccCCC---CCccEEEEcCCCCCCcccc
Q psy15742        241 --------QF---------IQGDFFALAPS---LQGDVVFLSPPWGGPEYAR  272 (342)
Q Consensus       241 --------~~---------~~~D~~~~~~~---~~~D~Ii~nPP~~~~~~~~  272 (342)
                              .+         ..+|+.++...   ..+|+++..||+.+.+..+
T Consensus        91 ~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip~~vDll~ggpPCQ~fS~ag  142 (403)
T 4dkj_A           91 KINNTIKASYLNYAKKHFNNLFDIKKVNKDNFPKNIDIFTYSFPCQDLSVQG  142 (403)
T ss_dssp             HHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSCSSCSEEEECCCCTTTCTTS
T ss_pred             cccHHHHHHHHhhcccCCCcccchhhcCHhhCCCCCcEEEEeCCCCCHHHhC
Confidence                    00         34777776422   2479999999998776544

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=95.95  E-value=0.017  Score=62.14  Aligned_cols=77  Identities=18%  Similarity=0.211  Sum_probs=58.9

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-----------------
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-----------------  250 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~--~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~-----------------  250 (342)
                      ..+++|+|||.|++++.+.+.|.  .+.++|+++.+++.-+.|..      ...++.+|+.++                 
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~gdi~~~~~~~l  924 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP------GTTVFTEDCNVLLKLVMAGEVTNSLGQRL  924 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT------TSEEECSCHHHHHHHHTTTCSBCSSCCBC
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC------CCcEeeccHHHHhHhhhccchhhhhhhhc
Confidence            45799999999999999988875  47899999999998888852      345666665421                 


Q ss_pred             CCCCCccEEEEcCCCCCCcccc
Q psy15742        251 APSLQGDVVFLSPPWGGPEYAR  272 (342)
Q Consensus       251 ~~~~~~D~Ii~nPP~~~~~~~~  272 (342)
                      +..+.+|+|+.-||+.+.+..+
T Consensus       925 p~~~~vDvl~GGpPCQ~FS~ag  946 (1330)
T 3av4_A          925 PQKGDVEMLCGGPPCQGFSGMN  946 (1330)
T ss_dssp             CCTTTCSEEEECCCCTTTCSSS
T ss_pred             cccCccceEEecCCCccccccc
Confidence            1224689999999999876444

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=95.48  E-value=0.018  Score=51.58  Aligned_cols=69  Identities=12%  Similarity=0.027  Sum_probs=46.5

Q ss_pred             cCCCCeEEeccC------CCcHHHHHHHH-hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEE
Q psy15742        187 CKASDVVIDGFC------GCGGNTIQFAA-VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVV  259 (342)
Q Consensus       187 ~~~~~~vLDlgc------GtG~~~~~~a~-~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~I  259 (342)
                      ++.|.+|||+|+      -.|+..+.-.. .|..|+++|+.+-..           . .+ .++++|+.......+||+|
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s-----------d-a~-~~IqGD~~~~~~~~k~DLV  173 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS-----------D-AD-STLIGDCATVHTANKWDLI  173 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC-----------S-SS-EEEESCGGGEEESSCEEEE
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc-----------C-CC-eEEEccccccccCCCCCEE
Confidence            356899999996      56773222111 245999999987321           1 13 4599998877666789999


Q ss_pred             EEc--CCCCCC
Q psy15742        260 FLS--PPWGGP  268 (342)
Q Consensus       260 i~n--PP~~~~  268 (342)
                      ++|  |+-.|.
T Consensus       174 ISDMAPNtTG~  184 (344)
T 3r24_A          174 ISDMYDPRTKH  184 (344)
T ss_dssp             EECCCCTTSCS
T ss_pred             EecCCCCcCCc
Confidence            999  554443

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=93.73  E-value=0.048  Score=48.91  Aligned_cols=75  Identities=20%  Similarity=0.274  Sum_probs=45.6

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccccCCCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG-DFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~-D~~~~~~~~~~D~Ii~nP  263 (342)
                      ++++.+|||+||++|+++..+++.  ...|+|+|+...+...... ....+. +-+.+..+ |+..+ ....+|+|++|-
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~l-~~~~~DlVlsD~  155 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFTM-PTEPSDTLLCDI  155 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTTS-CCCCCSEEEECC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceEEeecCceeeec-CCCCcCEEeecC
Confidence            467899999999999999999974  4578999997532100000 000011 11223222 44433 345899999994


Q ss_pred             C
Q psy15742        264 P  264 (342)
Q Consensus       264 P  264 (342)
                      .
T Consensus       156 A  156 (300)
T 3eld_A          156 G  156 (300)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=92.93  E-value=0.37  Score=44.88  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=45.0

Q ss_pred             CCeEEeccCCCcHHHHHHHHh-----------------CCEEEEEeCCHHHHHHHHHHHHHcC-----------CCCcEE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV-----------------CQKVISIDIDPAKLRLAQHNASVYG-----------VSHKIQ  241 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~-----------------~~~v~gvD~s~~~l~~a~~n~~~~g-----------l~~~i~  241 (342)
                      +.+|+|+|||+|.+++.++..                 ..+|+..|+-.......=+.+....           ...+.-
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            568999999999999988432                 1355666654444333222222110           000111


Q ss_pred             EEE---ccccc-cCCCCCccEEEEcCCCCCCc
Q psy15742        242 FIQ---GDFFA-LAPSLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       242 ~~~---~D~~~-~~~~~~~D~Ii~nPP~~~~~  269 (342)
                      |+.   +.+.. ..++.++|+|+++-..+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls  164 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLS  164 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCS
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeec
Confidence            222   22222 23667999999998877765

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=92.84  E-value=0.047  Score=49.24  Aligned_cols=31  Identities=23%  Similarity=0.248  Sum_probs=25.2

Q ss_pred             CcEEEEEccccccC---CCCCccEEEEcCCCCCC
Q psy15742        238 HKIQFIQGDFFALA---PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       238 ~~i~~~~~D~~~~~---~~~~~D~Ii~nPP~~~~  268 (342)
                      .+++++++|+.+.+   ++++||+|++||||...
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~   53 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTL   53 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCC
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCc
Confidence            36899999998854   45689999999999754

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=92.60  E-value=0.65  Score=43.39  Aligned_cols=78  Identities=15%  Similarity=-0.056  Sum_probs=49.8

Q ss_pred             CCeEEeccCCCcHHHHHHHHh-------------------CCEEEEEeCC-----------HHHHHHHHHHHHHcCCCCc
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV-------------------CQKVISIDID-----------PAKLRLAQHNASVYGVSHK  239 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~-------------------~~~v~gvD~s-----------~~~l~~a~~n~~~~gl~~~  239 (342)
                      .-+|+|+||++|.+++.+...                   ...|+..|+-           +...+.++.   ..|-..+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence            468999999999999988654                   1357788876           444443322   1232112


Q ss_pred             EEEEEccccc---c-CCCCCccEEEEcCCCCCCcc
Q psy15742        240 IQFIQGDFFA---L-APSLQGDVVFLSPPWGGPEY  270 (342)
Q Consensus       240 i~~~~~D~~~---~-~~~~~~D~Ii~nPP~~~~~~  270 (342)
                      .-|+.+....   - .++.++|+|+++-..+..+.
T Consensus       130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~  164 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQ  164 (384)
T ss_dssp             SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSS
T ss_pred             ceEEEecchhhhhccCCCCceEEEEecceeeecCC
Confidence            3465554433   2 36789999999977776543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.48  E-value=0.45  Score=37.14  Aligned_cols=65  Identities=12%  Similarity=0.042  Sum_probs=45.6

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVF  260 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii  260 (342)
                      ..+++=+||  |.++..+++    .|.+|+++|.+++.++.++.    .    .+.++.+|..+..     .-..+|+|+
T Consensus         6 ~~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~----~~~~~~gd~~~~~~l~~~~~~~~d~vi   75 (141)
T 3llv_A            6 RYEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----E----GFDAVIADPTDESFYRSLDLEGVSAVL   75 (141)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T----TCEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----C----CCcEEECCCCCHHHHHhCCcccCCEEE
Confidence            346777777  455555544    48999999999988776654    2    3567888887542     224689999


Q ss_pred             EcCC
Q psy15742        261 LSPP  264 (342)
Q Consensus       261 ~nPP  264 (342)
                      ...|
T Consensus        76 ~~~~   79 (141)
T 3llv_A           76 ITGS   79 (141)
T ss_dssp             ECCS
T ss_pred             EecC
Confidence            8777

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=90.94  E-value=0.12  Score=47.18  Aligned_cols=31  Identities=26%  Similarity=0.348  Sum_probs=25.6

Q ss_pred             CcEEEEEccccccC---CCCCccEEEEcCCCCCC
Q psy15742        238 HKIQFIQGDFFALA---PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       238 ~~i~~~~~D~~~~~---~~~~~D~Ii~nPP~~~~  268 (342)
                      ++..++++|+.+.+   +++++|+|++||||...
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~   46 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQ   46 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSS
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCC
Confidence            46889999998643   56789999999999765

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=90.63  E-value=0.98  Score=39.62  Aligned_cols=72  Identities=18%  Similarity=0.137  Sum_probs=55.0

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~  255 (342)
                      |+.+|=-|++.|.   .+..+|+.|.+|+.+|.+++.++.+.+.++..|.  ++.++.+|+.+..           .-++
T Consensus         7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   84 (254)
T 4fn4_A            7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFETYSR   84 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            6677777766654   3444555699999999999999998888887774  7899999998652           1247


Q ss_pred             ccEEEEcC
Q psy15742        256 GDVVFLSP  263 (342)
Q Consensus       256 ~D~Ii~nP  263 (342)
                      .|++|.|-
T Consensus        85 iDiLVNNA   92 (254)
T 4fn4_A           85 IDVLCNNA   92 (254)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999875

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=90.62  E-value=0.44  Score=37.39  Aligned_cols=65  Identities=8%  Similarity=0.015  Sum_probs=44.3

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVF  260 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii  260 (342)
                      ..+|+=+|||  .++..+++    .|..|+++|.+++.++.++.    .    .+.++.+|..+..     .-..+|+|+
T Consensus         7 ~~~viIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~----g~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (140)
T 3fwz_A            7 CNHALLVGYG--RVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R----GVRAVLGNAANEEIMQLAHLECAKWLI   76 (140)
T ss_dssp             CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T----TCEEEESCTTSHHHHHHTTGGGCSEEE
T ss_pred             CCCEEEECcC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c----CCCEEECCCCCHHHHHhcCcccCCEEE
Confidence            3467777764  45544443    48999999999998877664    2    3567889886531     123689998


Q ss_pred             EcCC
Q psy15742        261 LSPP  264 (342)
Q Consensus       261 ~nPP  264 (342)
                      +--|
T Consensus        77 ~~~~   80 (140)
T 3fwz_A           77 LTIP   80 (140)
T ss_dssp             ECCS
T ss_pred             EECC
Confidence            7655

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=89.99  E-value=0.09  Score=46.40  Aligned_cols=30  Identities=13%  Similarity=0.231  Sum_probs=23.7

Q ss_pred             cEEEEEccccccC---CCCCccEEEEcCCCCCC
Q psy15742        239 KIQFIQGDFFALA---PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       239 ~i~~~~~D~~~~~---~~~~~D~Ii~nPP~~~~  268 (342)
                      ..+++++|+.+.+   +.+++|+|++||||...
T Consensus         4 ~~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~   36 (260)
T 1g60_A            4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYNLS   36 (260)
T ss_dssp             SSSEEECCHHHHHHHSCTTCEEEEEECCCCSSC
T ss_pred             cCeEEechHHHHHHhccccccCEEEECCCCCCC
Confidence            3568899987653   55689999999999754

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=89.17  E-value=1.3  Score=38.83  Aligned_cols=74  Identities=15%  Similarity=0.040  Sum_probs=54.7

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~  255 (342)
                      |+++|=-|++.|.   .+..+++.|.+|+..|.+++.++.+.+.+...|.  ++.++.+|+.+..           .-++
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   86 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDAEGIH   86 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            6667766655543   3444455699999999999999888888887775  7889999987642           2357


Q ss_pred             ccEEEEcCCC
Q psy15742        256 GDVVFLSPPW  265 (342)
Q Consensus       256 ~D~Ii~nPP~  265 (342)
                      .|++|.|--.
T Consensus        87 iDiLVNNAG~   96 (255)
T 4g81_D           87 VDILINNAGI   96 (255)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            8999988643

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=88.77  E-value=2.9  Score=35.71  Aligned_cols=74  Identities=12%  Similarity=0.061  Sum_probs=54.1

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      ++++|=.| |+|+++..++    +.|.+|+.++.++...+.....++..+.  ++.++.+|+.+..           ..+
T Consensus         5 ~k~vlITG-as~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (247)
T 3lyl_A            5 EKVALVTG-ASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGF--KARGLVLNISDIESIQNFFAEIKAENL   81 (247)
T ss_dssp             TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            55666555 5566555554    4589999999999998888877777664  7899999987642           224


Q ss_pred             CccEEEEcCCCC
Q psy15742        255 QGDVVFLSPPWG  266 (342)
Q Consensus       255 ~~D~Ii~nPP~~  266 (342)
                      ..|++|.|.-..
T Consensus        82 ~id~li~~Ag~~   93 (247)
T 3lyl_A           82 AIDILVNNAGIT   93 (247)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999987544

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=88.41  E-value=0.19  Score=45.89  Aligned_cols=30  Identities=13%  Similarity=0.196  Sum_probs=24.3

Q ss_pred             cEEEE-EccccccC---CCCCccEEEEcCCCCCC
Q psy15742        239 KIQFI-QGDFFALA---PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       239 ~i~~~-~~D~~~~~---~~~~~D~Ii~nPP~~~~  268 (342)
                      ..+++ ++|+.+.+   +.+++|+|++||||...
T Consensus        38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~   71 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIM   71 (319)
T ss_dssp             EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCC
T ss_pred             cceEEECCcHHHHHHhCccCCcCEEEECCCCCCC
Confidence            46788 99998753   55689999999999764

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=88.13  E-value=2.6  Score=36.64  Aligned_cols=72  Identities=15%  Similarity=0.017  Sum_probs=52.7

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~  255 (342)
                      ++++|=.|++.|.   ++..+++.|.+|+.++.+++.++.+.+.+...+.  ++.++.+|+.+..           ..+.
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGR--RALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5677766665442   3334455599999999999999888887776664  7899999988752           1247


Q ss_pred             ccEEEEcC
Q psy15742        256 GDVVFLSP  263 (342)
Q Consensus       256 ~D~Ii~nP  263 (342)
                      .|++|.|.
T Consensus        89 id~lv~nA   96 (264)
T 3ucx_A           89 VDVVINNA   96 (264)
T ss_dssp             CSEEEECC
T ss_pred             CcEEEECC
Confidence            89999886

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=87.81  E-value=3.2  Score=37.38  Aligned_cols=125  Identities=14%  Similarity=0.018  Sum_probs=67.0

Q ss_pred             CeEEeccCCCcHHHHHHHH----h--C--CEEEEEeCCH--------H-HHHHHHHHHHHcC-C-CC--cEEEEEccccc
Q psy15742        191 DVVIDGFCGCGGNTIQFAA----V--C--QKVISIDIDP--------A-KLRLAQHNASVYG-V-SH--KIQFIQGDFFA  249 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~----~--~--~~v~gvD~s~--------~-~l~~a~~n~~~~g-l-~~--~i~~~~~D~~~  249 (342)
                      -+|+|+|=|||.+.+....    .  .  .+.+++|..+        + .-+..+.-..... . .+  ..++..+|+.+
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~  177 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK  177 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence            4799999999997654432    1  2  3567777532        1 1112222122110 0 12  35678899877


Q ss_pred             cC---CCCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHH-HhhCCCcEEE
Q psy15742        250 LA---PSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIF-HDSGKKGSFI  325 (342)
Q Consensus       250 ~~---~~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-~~~~~~~~i~  325 (342)
                      ..   +...+|+|+.|+ |....           -|.+|....+..+++...+++.+.- -+... .+. .+...||.|.
T Consensus       178 ~l~~l~~~~~Da~flDg-FsP~k-----------NPeLWs~e~f~~l~~~~~pgg~laT-Ytaag-~VRR~L~~aGF~V~  243 (308)
T 3vyw_A          178 RIKEVENFKADAVFHDA-FSPYK-----------NPELWTLDFLSLIKERIDEKGYWVS-YSSSL-SVRKSLLTLGFKVG  243 (308)
T ss_dssp             HGGGCCSCCEEEEEECC-SCTTT-----------SGGGGSHHHHHHHHTTEEEEEEEEE-SCCCH-HHHHHHHHTTCEEE
T ss_pred             HHhhhcccceeEEEeCC-CCccc-----------CcccCCHHHHHHHHHHhCCCcEEEE-EeCcH-HHHHHHHHCCCEEE
Confidence            64   334799999996 44331           1222333355566666677666652 11222 222 2445677777


Q ss_pred             Eecc
Q psy15742        326 SLTG  329 (342)
Q Consensus       326 ~i~~  329 (342)
                      .+-+
T Consensus       244 k~~G  247 (308)
T 3vyw_A          244 SSRE  247 (308)
T ss_dssp             EEEC
T ss_pred             ecCC
Confidence            6654

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=87.76  E-value=0.63  Score=43.45  Aligned_cols=43  Identities=26%  Similarity=0.183  Sum_probs=36.2

Q ss_pred             hcCCCCeEEeccCCC-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHH
Q psy15742        186 RCKASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQ  228 (342)
Q Consensus       186 ~~~~~~~vLDlgcGt-G~~~~~~a~~-~~-~v~gvD~s~~~l~~a~  228 (342)
                      .+++|++||-.|||. |.+++.+|+. |. +|+++|.+++.++.++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  227 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS  227 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence            456899999999876 7788888875 76 9999999999888775

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=87.29  E-value=1.1  Score=40.97  Aligned_cols=67  Identities=18%  Similarity=0.131  Sum_probs=47.0

Q ss_pred             hcCCCCeEEeccCCC-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742        186 RCKASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  262 (342)
Q Consensus       186 ~~~~~~~vLDlgcGt-G~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n  262 (342)
                      .+++|++||-.|+|. |..++.+|+. |.+|+++|.+++.++.+++    .|.+  . ++ .|...+ .. .+|+|+-.
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~--~-v~-~~~~~~-~~-~~D~vid~  241 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGVK--H-FY-TDPKQC-KE-ELDFIIST  241 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTCS--E-EE-SSGGGC-CS-CEEEEEEC
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCCC--e-ec-CCHHHH-hc-CCCEEEEC
Confidence            456899999998864 6777777776 8899999999998887754    4542  2 22 443332 22 78988853

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=87.24  E-value=2.2  Score=38.02  Aligned_cols=74  Identities=18%  Similarity=0.069  Sum_probs=54.5

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------CC
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------SL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~~  254 (342)
                      ++++|=.|++ |+++..++    +.|.+|+.++.++..++.+.+.+...+.  ++.++.+|+.+...           .+
T Consensus        31 gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           31 GRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF--DAHGVVCDVRHLDEMVRLADEAFRLLG  107 (301)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            5667766655 55555544    4589999999999999888887776664  78999999887521           13


Q ss_pred             CccEEEEcCCCC
Q psy15742        255 QGDVVFLSPPWG  266 (342)
Q Consensus       255 ~~D~Ii~nPP~~  266 (342)
                      ..|++|.|.-..
T Consensus       108 ~id~lvnnAg~~  119 (301)
T 3tjr_A          108 GVDVVFSNAGIV  119 (301)
T ss_dssp             SCSEEEECCCCC
T ss_pred             CCCEEEECCCcC
Confidence            789999986554

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=86.91  E-value=0.27  Score=45.53  Aligned_cols=80  Identities=14%  Similarity=0.109  Sum_probs=53.1

Q ss_pred             CCeEEeccCCCcHHHHHHHHh------------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc---ccc
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV------------------CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG---DFF  248 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~------------------~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~---D~~  248 (342)
                      .-+|+|+||++|.+++.+...                  ...|+..|+-......+-+++....-..+.-|+.+   .++
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            357999999999988766433                  24688999888877777766643110012244444   333


Q ss_pred             cc-CCCCCccEEEEcCCCCCCc
Q psy15742        249 AL-APSLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       249 ~~-~~~~~~D~Ii~nPP~~~~~  269 (342)
                      .- .++.++|+|+++-..+..+
T Consensus       132 ~rlfp~~S~d~v~Ss~aLHWls  153 (359)
T 1m6e_X          132 GRLFPRNTLHFIHSSYSLMWLS  153 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCS
T ss_pred             hccCCCCceEEEEehhhhhhcc
Confidence            33 3778999999987766654

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=86.76  E-value=2.6  Score=37.90  Aligned_cols=76  Identities=13%  Similarity=-0.020  Sum_probs=54.7

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      ++++|=.|++ |+++..++    +.|.+|++++.++..++.+...+...+...++.++.+|+.+..           ..+
T Consensus         8 ~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            8 GRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             TCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            5567766655 55555554    4589999999999998888887776654347899999987642           124


Q ss_pred             CccEEEEcCCCC
Q psy15742        255 QGDVVFLSPPWG  266 (342)
Q Consensus       255 ~~D~Ii~nPP~~  266 (342)
                      ..|++|.|.-..
T Consensus        87 ~id~lv~nAg~~   98 (319)
T 3ioy_A           87 PVSILCNNAGVN   98 (319)
T ss_dssp             CEEEEEECCCCC
T ss_pred             CCCEEEECCCcC
Confidence            689999986543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=86.70  E-value=0.24  Score=50.05  Aligned_cols=75  Identities=24%  Similarity=0.230  Sum_probs=50.2

Q ss_pred             CCeEEeccCCCcHHHHHHHHhC--------------CEEEEEeC---CHHHHHHHHH-----------HHHHc-----C-
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVC--------------QKVISIDI---DPAKLRLAQH-----------NASVY-----G-  235 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~--------------~~v~gvD~---s~~~l~~a~~-----------n~~~~-----g-  235 (342)
                      .-+|+|+|.|+|.+.+.+.+..              .+++++|.   +.+-+..|-.           -++.+     | 
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            3489999999999888775531              57899998   5555543321           11211     1 


Q ss_pred             ----CCC---cEEEEEccccccCC------CCCccEEEEcCC
Q psy15742        236 ----VSH---KIQFIQGDFFALAP------SLQGDVVFLSPP  264 (342)
Q Consensus       236 ----l~~---~i~~~~~D~~~~~~------~~~~D~Ii~nPP  264 (342)
                          +++   .+++..+|+.+.++      ...+|.++.|+.
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f  180 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGF  180 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSS
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCC
Confidence                111   56788899987653      357999999974

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=86.64  E-value=1.2  Score=40.49  Aligned_cols=44  Identities=32%  Similarity=0.423  Sum_probs=37.0

Q ss_pred             hcCCCCeEEeccCCC-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q psy15742        186 RCKASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQH  229 (342)
Q Consensus       186 ~~~~~~~vLDlgcGt-G~~~~~~a~~-~~~v~gvD~s~~~l~~a~~  229 (342)
                      .+++|++||-.|+|. |..++.+|+. |.+|+++|.+++.++.+++
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            356789999999874 8888888886 8899999999999888754

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=86.55  E-value=1.6  Score=37.77  Aligned_cols=74  Identities=15%  Similarity=-0.082  Sum_probs=53.5

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----------CCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----------PSLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----------~~~~  255 (342)
                      ++++|=.|++ |+++..++    +.|.+|+.+|.++..++.+...+...+.  ++.++.+|+.+..          ..+.
T Consensus         7 ~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~g~   83 (252)
T 3h7a_A            7 NATVAVIGAG-DYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGG--RIVARSLDARNEDEVTAFLNAADAHAP   83 (252)
T ss_dssp             SCEEEEECCS-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence            5566666655 55555544    4589999999999988888887776653  7899999987642          0147


Q ss_pred             ccEEEEcCCCC
Q psy15742        256 GDVVFLSPPWG  266 (342)
Q Consensus       256 ~D~Ii~nPP~~  266 (342)
                      .|++|.|.-..
T Consensus        84 id~lv~nAg~~   94 (252)
T 3h7a_A           84 LEVTIFNVGAN   94 (252)
T ss_dssp             EEEEEECCCCC
T ss_pred             ceEEEECCCcC
Confidence            89999886543

>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28

Probab=86.19  E-value=1.3  Score=39.51  Aligned_cols=99  Identities=16%  Similarity=0.119  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHcCCCCcEEEE--EccccccCCC-CCccEEEEcCCCCCCccccc--cccccccCcCCCCchhhhHhhh
Q psy15742        221 PAKLRLAQHNASVYGVSHKIQFI--QGDFFALAPS-LQGDVVFLSPPWGGPEYARS--SFSIDNIFPEQGGGRRLFQVAR  295 (342)
Q Consensus       221 ~~~l~~a~~n~~~~gl~~~i~~~--~~D~~~~~~~-~~~D~Ii~nPP~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  295 (342)
                      .+.+..+.+.++      ++++.  ++|+.+.... ..=|+|++||||...+-...  ...-..+...  +...+.+...
T Consensus       156 ~~~l~~~~~~l~------~v~i~~~~~Df~~~i~~~~~~~fvY~DPPY~~~~~~~~f~~Y~~~~f~~~--dh~~L~~~l~  227 (284)
T 2dpm_A          156 EELISAISVYIN------NNQLEIKVGDFEKAIVDVRTGDFVYFDPPYIPLSETSAFTSYTHEGFSFA--DQVRLRDAFK  227 (284)
T ss_dssp             HHHHHHHHHHHH------HSEEEEEESCGGGGGTTCCTTCEEEECCCCCCC-----CCCCCCSSCCHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHhC------CCEEEEeCCCHHHHHHhcCCCCEEEeCCCcccccCCCCccccccCCCCHH--HHHHHHHHHH
Confidence            566777776665      46677  9999988642 34589999999976321110  0100011111  2334555555


Q ss_pred             ccCC-CceeecCCCCCHHHHHHhhCCCcEEEEecc
Q psy15742        296 GISP-NVGYYLPRTSDVFEIFHDSGKKGSFISLTG  329 (342)
Q Consensus       296 ~~~~-~~~~~l~~~~~~~~l~~~~~~~~~i~~i~~  329 (342)
                      .+.. +.-.+++.+-+ ..+..+ ..++.+..+..
T Consensus       228 ~l~~~g~~~~lS~~d~-~~i~~l-y~~~~i~~~~~  260 (284)
T 2dpm_A          228 RLSDTGAYVMLSNSSS-ALVEEL-YKDFNIHYVEA  260 (284)
T ss_dssp             HHHTTTCEEEEEEESC-HHHHHH-TTTSEEEEEC-
T ss_pred             HHHhcCCEEEEEcCCC-HHHHHH-HcCCeEEEEEe
Confidence            5543 23333333333 334444 56777776654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=85.85  E-value=2.9  Score=31.89  Aligned_cols=66  Identities=18%  Similarity=0.141  Sum_probs=41.9

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVF  260 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii  260 (342)
                      +.+|+=+|+  |.++..+++    .+.+|+.+|.+++.++.++..   .+    +.++.+|..+..     .-..+|+|+
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~~----~~~~~~d~~~~~~l~~~~~~~~d~vi   74 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---ID----ALVINGDCTKIKTLEDAGIEDADMYI   74 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---cC----cEEEEcCCCCHHHHHHcCcccCCEEE
Confidence            346766665  666655544    488999999999877655432   12    456677764321     123689999


Q ss_pred             EcCC
Q psy15742        261 LSPP  264 (342)
Q Consensus       261 ~nPP  264 (342)
                      ...|
T Consensus        75 ~~~~   78 (140)
T 1lss_A           75 AVTG   78 (140)
T ss_dssp             ECCS
T ss_pred             EeeC
Confidence            8766

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=85.83  E-value=2.1  Score=39.03  Aligned_cols=60  Identities=12%  Similarity=0.107  Sum_probs=46.2

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC--------------------CCCcEEEEEcc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--------------------VSHKIQFIQGD  246 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~g--------------------l~~~i~~~~~D  246 (342)
                      +...|+++|||..+....+...  +..++-||. |+.++.-++.+...+                    .+++..++.+|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            4568999999999999999874  456677776 888888777776642                    12578899999


Q ss_pred             ccc
Q psy15742        247 FFA  249 (342)
Q Consensus       247 ~~~  249 (342)
                      +.+
T Consensus       176 L~d  178 (334)
T 1rjd_A          176 LND  178 (334)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            876

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=85.53  E-value=3.3  Score=35.84  Aligned_cols=77  Identities=17%  Similarity=0.182  Sum_probs=54.9

Q ss_pred             CCeEEeccC-CCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------CC
Q psy15742        190 SDVVIDGFC-GCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------SL  254 (342)
Q Consensus       190 ~~~vLDlgc-GtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~~  254 (342)
                      ++++|=.|+ |.|.   ++..+++.|.+|+.++.+...++.+.+.+...+- .++.++.+|+.+...           .+
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  100 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGL-GRVEAVVCDVTSTEAVDALITQTVEKAG  100 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCS-SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC-CceEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence            667777776 4443   3444555699999999999988888777765542 479999999976421           13


Q ss_pred             CccEEEEcCCCCC
Q psy15742        255 QGDVVFLSPPWGG  267 (342)
Q Consensus       255 ~~D~Ii~nPP~~~  267 (342)
                      ..|++|.|.-...
T Consensus       101 ~id~li~~Ag~~~  113 (266)
T 3o38_A          101 RLDVLVNNAGLGG  113 (266)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCcEEEECCCcCC
Confidence            6899999876543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=85.52  E-value=1.2  Score=41.04  Aligned_cols=43  Identities=23%  Similarity=0.313  Sum_probs=35.7

Q ss_pred             cCCCCeEEeccCCC-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHH
Q psy15742        187 CKASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQH  229 (342)
Q Consensus       187 ~~~~~~vLDlgcGt-G~~~~~~a~~-~~-~v~gvD~s~~~l~~a~~  229 (342)
                      +++|++||-.|||. |..++.+|+. |. .|+++|.+++.++.+++
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            56789999999875 7778888875 66 79999999999988864

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=85.24  E-value=4  Score=35.47  Aligned_cols=76  Identities=9%  Similarity=-0.087  Sum_probs=52.9

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-------CCCCccE
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDV  258 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-------~~~~~D~  258 (342)
                      ++++|=.|+ +|+++..++    +.|.+|+.+|.+++.++.+.+.+...+....+.++.+|+.+..       .-+..|+
T Consensus        10 ~k~~lVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   88 (267)
T 3t4x_A           10 GKTALVTGS-TAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDI   88 (267)
T ss_dssp             TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSE
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCE
Confidence            556776665 455555554    4589999999999988877777766543346788899987642       1247899


Q ss_pred             EEEcCCCC
Q psy15742        259 VFLSPPWG  266 (342)
Q Consensus       259 Ii~nPP~~  266 (342)
                      +|.|.-..
T Consensus        89 lv~nAg~~   96 (267)
T 3t4x_A           89 LINNLGIF   96 (267)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCC
Confidence            99886543

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=85.05  E-value=3  Score=36.65  Aligned_cols=74  Identities=12%  Similarity=-0.031  Sum_probs=52.7

Q ss_pred             CCeEEeccCCCcHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~----a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      ++++|=.|++ |+++..+    ++.|.+|+.++.+++.++.+.+.+...+.  ++.++.+|+.+..           ..+
T Consensus        24 ~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           24 PQTAFVTGVS-SGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGH--DVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             -CEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5567766654 5555554    44589999999999988888777766553  7899999987642           113


Q ss_pred             CccEEEEcCCCC
Q psy15742        255 QGDVVFLSPPWG  266 (342)
Q Consensus       255 ~~D~Ii~nPP~~  266 (342)
                      ..|++|.|.-..
T Consensus       101 ~id~lv~nAg~~  112 (279)
T 3sju_A          101 PIGILVNSAGRN  112 (279)
T ss_dssp             SCCEEEECCCCC
T ss_pred             CCcEEEECCCCC
Confidence            789999886543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=84.82  E-value=1.9  Score=36.33  Aligned_cols=60  Identities=22%  Similarity=0.164  Sum_probs=42.5

Q ss_pred             CCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEEcCC
Q psy15742        198 CGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPP  264 (342)
Q Consensus       198 cGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~nPP  264 (342)
                      ||.|.++..+++.    +..|+.+|.+++.++...+..       .+.++.+|..+..     .-..+|+|++--|
T Consensus         6 iG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-------~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   74 (218)
T 3l4b_C            6 IGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-------KATIIHGDGSHKEILRDAEVSKNDVVVILTP   74 (218)
T ss_dssp             ECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-------SSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred             ECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-------CCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence            4568887777653    889999999999887654331       3568899987642     2246898888655

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=84.37  E-value=1.5  Score=40.21  Aligned_cols=44  Identities=20%  Similarity=0.197  Sum_probs=35.7

Q ss_pred             hcCCCCeEEeccCCC-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHH
Q psy15742        186 RCKASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQH  229 (342)
Q Consensus       186 ~~~~~~~vLDlgcGt-G~~~~~~a~~-~~-~v~gvD~s~~~l~~a~~  229 (342)
                      .+++|++||-.|+|. |..++.+|+. |. +|+++|.+++.++.+++
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            456889999999874 7777778875 76 99999999998888763

>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*

Probab=84.21  E-value=1.3  Score=38.95  Aligned_cols=41  Identities=27%  Similarity=0.446  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742        221 PAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       221 ~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~  268 (342)
                      .+.+..+.+.++      ++++.+.|+.+.. ...=|+|++||||...
T Consensus       137 ~~~l~~~~~~l~------~v~i~~~Df~~~i-~~~~~fvY~DPPY~~~  177 (259)
T 1yf3_A          137 EKRFNHFKQNCD------KIIFSSLHFKDVK-ILDGDFVYVDPPYLIT  177 (259)
T ss_dssp             HHHHHHHHHHGG------GEEEECCCGGGCC-CCTTEEEEECCCCTTS
T ss_pred             HHHHHHHHHHhc------CCEEEcCCHHHHh-CCCCeEEEECCCCCCc
Confidence            344555555543      7899999999987 4566899999999764

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=84.06  E-value=1.5  Score=40.81  Aligned_cols=44  Identities=25%  Similarity=0.195  Sum_probs=35.9

Q ss_pred             hcCCCCeEEeccCCC-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHH
Q psy15742        186 RCKASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQH  229 (342)
Q Consensus       186 ~~~~~~~vLDlgcGt-G~~~~~~a~~-~~-~v~gvD~s~~~l~~a~~  229 (342)
                      .+++|++||-.|||. |.+++.+|+. |. .|+++|.+++.++.+++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            456889999999864 7778888876 66 79999999999888854

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=83.82  E-value=4.1  Score=35.49  Aligned_cols=73  Identities=8%  Similarity=-0.001  Sum_probs=51.5

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CC-
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS-  253 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~-  253 (342)
                      ++++|=.| |+|+++..+++    .|.+|+.++.+++.++.+.+.+...+.  ++.++.+|+.+..           .- 
T Consensus        21 ~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   97 (273)
T 1ae1_A           21 GTTALVTG-GSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHVFD   97 (273)
T ss_dssp             TCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            55666655 45666665554    489999999999888776666655553  6889999987642           01 


Q ss_pred             CCccEEEEcCCC
Q psy15742        254 LQGDVVFLSPPW  265 (342)
Q Consensus       254 ~~~D~Ii~nPP~  265 (342)
                      +..|++|.|.-.
T Consensus        98 g~id~lv~nAg~  109 (273)
T 1ae1_A           98 GKLNILVNNAGV  109 (273)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            578999998643

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=83.80  E-value=2.8  Score=36.65  Aligned_cols=74  Identities=9%  Similarity=0.080  Sum_probs=53.4

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      ++++|=.| |+|+++..++    +.|.+|+.++.+++.++.+.+.+...+.  ++.++.+|+.+..           ..+
T Consensus        26 gk~~lVTG-as~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (271)
T 4ibo_A           26 GRTALVTG-SSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGH--DAEAVAFDVTSESEIIEAFARLDEQGI  102 (271)
T ss_dssp             TCEEEETT-CSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            55666655 4555555554    4589999999999988888777776664  7889999987642           123


Q ss_pred             CccEEEEcCCCC
Q psy15742        255 QGDVVFLSPPWG  266 (342)
Q Consensus       255 ~~D~Ii~nPP~~  266 (342)
                      ..|++|.|.-..
T Consensus       103 ~iD~lv~nAg~~  114 (271)
T 4ibo_A          103 DVDILVNNAGIQ  114 (271)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999986543

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=83.78  E-value=5.4  Score=34.64  Aligned_cols=74  Identities=14%  Similarity=0.008  Sum_probs=53.0

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      ++++|=.| |+|+++..+++    .|.+|++++.++..++.....++..+.  ++.++.+|+.+..           ..+
T Consensus        31 ~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~g  107 (272)
T 1yb1_A           31 GEIVLITG-AGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA--KVHTFVVDCSNREDIYSSAKKVKAEIG  107 (272)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCC--eEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            55666555 56677666654    489999999999888777776665553  7899999987642           113


Q ss_pred             CccEEEEcCCCC
Q psy15742        255 QGDVVFLSPPWG  266 (342)
Q Consensus       255 ~~D~Ii~nPP~~  266 (342)
                      ..|++|.+.-..
T Consensus       108 ~iD~li~~Ag~~  119 (272)
T 1yb1_A          108 DVSILVNNAGVV  119 (272)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCcEEEECCCcC
Confidence            689999986543

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=83.71  E-value=5  Score=34.82  Aligned_cols=74  Identities=14%  Similarity=0.068  Sum_probs=52.4

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccccccCC-----------C
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASV-YGVSHKIQFIQGDFFALAP-----------S  253 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~-~gl~~~i~~~~~D~~~~~~-----------~  253 (342)
                      ++++|=.|++ |+++..++    +.|.+|+.++.+++.++.+...+.. .+.  ++.++.+|+.+...           .
T Consensus        20 ~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   96 (266)
T 4egf_A           20 GKRALITGAT-KGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGT--DVHTVAIDLAEPDAPAELARRAAEAF   96 (266)
T ss_dssp             TCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC--CEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            5566665554 55555544    4589999999999988877776654 343  78999999987531           1


Q ss_pred             CCccEEEEcCCCC
Q psy15742        254 LQGDVVFLSPPWG  266 (342)
Q Consensus       254 ~~~D~Ii~nPP~~  266 (342)
                      +..|++|.|.-..
T Consensus        97 g~id~lv~nAg~~  109 (266)
T 4egf_A           97 GGLDVLVNNAGIS  109 (266)
T ss_dssp             TSCSEEEEECCCC
T ss_pred             CCCCEEEECCCcC
Confidence            3789999886543

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=83.44  E-value=5.6  Score=34.73  Aligned_cols=73  Identities=16%  Similarity=0.052  Sum_probs=51.4

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      ++++|=.|+ +|+++..+++    .|.+|+.++.+++.++.+...+...+.  ++.++.+|+.+..           .-+
T Consensus        22 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           22 SEVALVTGA-TSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG   98 (277)
T ss_dssp             SCEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            556666554 5666655554    489999999999888777666665553  6889999987642           123


Q ss_pred             CccEEEEcCCC
Q psy15742        255 QGDVVFLSPPW  265 (342)
Q Consensus       255 ~~D~Ii~nPP~  265 (342)
                      ..|++|.|.-.
T Consensus        99 ~iD~lv~~Ag~  109 (277)
T 2rhc_B           99 PVDVLVNNAGR  109 (277)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999988643

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=83.43  E-value=1.8  Score=41.38  Aligned_cols=63  Identities=17%  Similarity=0.184  Sum_probs=45.6

Q ss_pred             CeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEE
Q psy15742        191 DVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL  261 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~  261 (342)
                      .+|+=  ||.|.++..+|+.    +..|+.+|.+++.++.+..++       .+..++||+.+..     .-...|++++
T Consensus         4 M~iiI--~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~Agi~~ad~~ia   74 (461)
T 4g65_A            4 MKIII--LGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEAGAQDADMLVA   74 (461)
T ss_dssp             EEEEE--ECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred             CEEEE--ECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence            34554  5556777777763    789999999999998877654       4678999988752     2246888886


Q ss_pred             c
Q psy15742        262 S  262 (342)
Q Consensus       262 n  262 (342)
                      -
T Consensus        75 ~   75 (461)
T 4g65_A           75 V   75 (461)
T ss_dssp             C
T ss_pred             E
Confidence            3

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=83.30  E-value=2.8  Score=36.76  Aligned_cols=73  Identities=15%  Similarity=0.125  Sum_probs=52.5

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----------SLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----------~~~  255 (342)
                      ++++|=.|+ +|+++..++    +.|.+|+.+|.+++.++.+...+...+.  ++.++.+|+.+...          .+.
T Consensus        33 gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~g~  109 (275)
T 4imr_A           33 GRTALVTGS-SRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGG--TAQELAGDLSEAGAGTDLIERAEAIAP  109 (275)
T ss_dssp             TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTC--CEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--eEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            566776554 555555554    4589999999998888777777766553  78999999976531          147


Q ss_pred             ccEEEEcCCC
Q psy15742        256 GDVVFLSPPW  265 (342)
Q Consensus       256 ~D~Ii~nPP~  265 (342)
                      .|++|.|.-.
T Consensus       110 iD~lvnnAg~  119 (275)
T 4imr_A          110 VDILVINASA  119 (275)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999988654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=83.15  E-value=3.7  Score=36.13  Aligned_cols=73  Identities=14%  Similarity=-0.047  Sum_probs=51.9

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      ++++|=.|+ +|+++..++    +.|.+|+.+|.+++.++.+...+...+  .++.++.+|+.+..           ..+
T Consensus        28 ~k~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           28 SPVALITGA-GSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             CCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            556665554 455555554    458999999999998888777776544  37899999987642           113


Q ss_pred             CccEEEEcCCC
Q psy15742        255 QGDVVFLSPPW  265 (342)
Q Consensus       255 ~~D~Ii~nPP~  265 (342)
                      ..|++|.|.-.
T Consensus       105 ~iD~lVnnAg~  115 (283)
T 3v8b_A          105 HLDIVVANAGI  115 (283)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999988654

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=83.04  E-value=4.4  Score=34.93  Aligned_cols=73  Identities=10%  Similarity=-0.011  Sum_probs=51.4

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------C-----C-
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------P-----S-  253 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~-----~-  253 (342)
                      ++++|=.| |+|+++..+++    .|.+|+.++.++..++.+...+...+.  ++.++.+|+.+..      .     . 
T Consensus         9 ~k~vlVTG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (260)
T 2ae2_A            9 GCTALVTG-GSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF--KVEASVCDLSSRSERQELMNTVANHFH   85 (260)
T ss_dssp             TCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            55676555 56666666554    489999999999888776666655443  6889999987642      0     1 


Q ss_pred             CCccEEEEcCCC
Q psy15742        254 LQGDVVFLSPPW  265 (342)
Q Consensus       254 ~~~D~Ii~nPP~  265 (342)
                      +..|++|.|.-.
T Consensus        86 g~id~lv~~Ag~   97 (260)
T 2ae2_A           86 GKLNILVNNAGI   97 (260)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            578999988653

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=82.68  E-value=4.7  Score=35.11  Aligned_cols=74  Identities=19%  Similarity=0.119  Sum_probs=51.4

Q ss_pred             CCeEEeccCCCcHHHHHH----HHhCCEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEccccccC--
Q psy15742        190 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDID------------PAKLRLAQHNASVYGVSHKIQFIQGDFFALA--  251 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~----a~~~~~v~gvD~s------------~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--  251 (342)
                      ++++|=.|+ +|+++..+    ++.|.+|+.+|.+            .+.++.....+...+.  ++.++.+|+.+..  
T Consensus        13 gk~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v   89 (278)
T 3sx2_A           13 GKVAFITGA-ARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS--RIVARQADVRDRESL   89 (278)
T ss_dssp             TCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC--CEEEEECCTTCHHHH
T ss_pred             CCEEEEECC-CChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHH
Confidence            566776664 45555554    4459999999987            7777776666665553  7899999987642  


Q ss_pred             ---------CCCCccEEEEcCCCC
Q psy15742        252 ---------PSLQGDVVFLSPPWG  266 (342)
Q Consensus       252 ---------~~~~~D~Ii~nPP~~  266 (342)
                               ..+..|++|.|.-..
T Consensus        90 ~~~~~~~~~~~g~id~lv~nAg~~  113 (278)
T 3sx2_A           90 SAALQAGLDELGRLDIVVANAGIA  113 (278)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCC
Confidence                     113789999986544

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=82.61  E-value=4.1  Score=29.92  Aligned_cols=66  Identities=21%  Similarity=-0.011  Sum_probs=44.5

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVF  260 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii  260 (342)
                      +.+|+=+|+  |.++..+++    .| .+|+++|.++..++.+.    .    ..+.++..|..+..    .-..+|+|+
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~~~~~d~vi   74 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKALGGFDAVI   74 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHHHcCCCEEE
Confidence            457888887  666655544    36 89999999998776654    1    24567777776531    012689999


Q ss_pred             EcCCC
Q psy15742        261 LSPPW  265 (342)
Q Consensus       261 ~nPP~  265 (342)
                      ...|+
T Consensus        75 ~~~~~   79 (118)
T 3ic5_A           75 SAAPF   79 (118)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            88764

>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*

Probab=82.57  E-value=1.2  Score=39.60  Aligned_cols=42  Identities=19%  Similarity=0.253  Sum_probs=30.1

Q ss_pred             CHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC-CCccEEEEcCCCCC
Q psy15742        220 DPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-LQGDVVFLSPPWGG  267 (342)
Q Consensus       220 s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~-~~~D~Ii~nPP~~~  267 (342)
                      +.+.+..+.+.++      ++++.++|+.+.... ..-|+|++||||..
T Consensus       144 ~~~~l~~~~~~l~------~v~i~~~Df~~~i~~~~~~~fvY~DPPY~~  186 (278)
T 2g1p_A          144 PEAELYHFAEKAQ------NAFFYCESYADSMARADDSSVVYCDPPYAP  186 (278)
T ss_dssp             CHHHHHHHHHHGG------GEEEEECCHHHHHTTCCTTEEEEECCSCCC
T ss_pred             CHHHHHHHHHHcC------CcEEEeCCHHHHHHhcCCCCEEEeCCcccc
Confidence            3456655555543      799999999887532 25589999999975

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=82.55  E-value=4.9  Score=35.58  Aligned_cols=73  Identities=19%  Similarity=0.153  Sum_probs=51.0

Q ss_pred             CCeEEeccCCCcHHHHHH----HHhCCEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEccccccC--
Q psy15742        190 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDID------------PAKLRLAQHNASVYGVSHKIQFIQGDFFALA--  251 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~----a~~~~~v~gvD~s------------~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--  251 (342)
                      ++++|=.|++. +++..+    ++.|.+|+.+|.+            ++.++.+...+...+.  ++.++.+|+.+..  
T Consensus        28 gk~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v  104 (299)
T 3t7c_A           28 GKVAFITGAAR-GQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR--RIIASQVDVRDFDAM  104 (299)
T ss_dssp             TCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHH
T ss_pred             CCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHH
Confidence            56677666554 444444    4559999999987            7777777666666553  7899999997642  


Q ss_pred             ---------CCCCccEEEEcCCC
Q psy15742        252 ---------PSLQGDVVFLSPPW  265 (342)
Q Consensus       252 ---------~~~~~D~Ii~nPP~  265 (342)
                               ..+..|++|.|.-.
T Consensus       105 ~~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          105 QAAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCCC
Confidence                     11478999988643

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=82.49  E-value=4.7  Score=34.66  Aligned_cols=76  Identities=11%  Similarity=-0.040  Sum_probs=52.5

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccC-----------CC
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA-----------PS  253 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~-----------~~  253 (342)
                      ++++|=.|++ |+++..++    +.|.+|+.++.+++.++.+.+.+...+-. .++.++.+|+.+..           ..
T Consensus         7 ~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (250)
T 3nyw_A            7 KGLAIITGAS-QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY   85 (250)
T ss_dssp             CCEEEEESTT-SHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence            5566665554 55555544    45899999999999888887777654221 36889999988642           11


Q ss_pred             CCccEEEEcCCCC
Q psy15742        254 LQGDVVFLSPPWG  266 (342)
Q Consensus       254 ~~~D~Ii~nPP~~  266 (342)
                      +..|++|.|.-..
T Consensus        86 g~iD~lvnnAg~~   98 (250)
T 3nyw_A           86 GAVDILVNAAAMF   98 (250)
T ss_dssp             CCEEEEEECCCCC
T ss_pred             CCCCEEEECCCcC
Confidence            4789999886543

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=82.46  E-value=6.8  Score=34.29  Aligned_cols=75  Identities=19%  Similarity=0.314  Sum_probs=51.6

Q ss_pred             CCeEEeccCCCcHHHHHHHHh---------CCEEEEEe-----CCH----------------------HHHHH---HHHH
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV---------CQKVISID-----IDP----------------------AKLRL---AQHN  230 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~---------~~~v~gvD-----~s~----------------------~~l~~---a~~n  230 (342)
                      .+.|+|+||..|..+..++..         ..+|+|+|     ..+                      +.++.   ..+|
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            458999999999998887652         37899999     221                      11221   1223


Q ss_pred             HHHcCC-CCcEEEEEccccccC-------CCCCccEEEEcCC
Q psy15742        231 ASVYGV-SHKIQFIQGDFFALA-------PSLQGDVVFLSPP  264 (342)
Q Consensus       231 ~~~~gl-~~~i~~~~~D~~~~~-------~~~~~D~Ii~nPP  264 (342)
                      .+..|. +++++++.|++.+.+       +..++|+|++|--
T Consensus       150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D  191 (257)
T 3tos_A          150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD  191 (257)
T ss_dssp             TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC
T ss_pred             hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc
Confidence            334555 478999999998764       2347999999864

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=82.37  E-value=5  Score=34.97  Aligned_cols=74  Identities=22%  Similarity=0.051  Sum_probs=51.7

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEccccccCC-
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDID------------PAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-  252 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s------------~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-  252 (342)
                      ++++|=.|++ |+++..++    +.|.+|+.+|.+            ...++.+...+...+.  ++.++.+|+.+... 
T Consensus        10 gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v   86 (287)
T 3pxx_A           10 DKVVLVTGGA-RGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR--KAYTAEVDVRDRAAV   86 (287)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS--CEEEEECCTTCHHHH
T ss_pred             CCEEEEeCCC-ChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCC--ceEEEEccCCCHHHH
Confidence            5566665554 55555544    458999999987            7777777777666553  78999999876421 


Q ss_pred             ----------CCCccEEEEcCCCC
Q psy15742        253 ----------SLQGDVVFLSPPWG  266 (342)
Q Consensus       253 ----------~~~~D~Ii~nPP~~  266 (342)
                                .+..|++|.|.-..
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~~  110 (287)
T 3pxx_A           87 SRELANAVAEFGKLDVVVANAGIC  110 (287)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcC
Confidence                      13789999986543

>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28

Probab=82.23  E-value=2.2  Score=38.06  Aligned_cols=49  Identities=12%  Similarity=0.150  Sum_probs=37.8

Q ss_pred             HHHHHHHHHhcCC-CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHH
Q psy15742        177 EKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLA  227 (342)
Q Consensus       177 e~~~~~i~~~~~~-~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a  227 (342)
                      ..++..+...+++ ..+.+|++||+|.++..+.  ...++..|+++..+..-
T Consensus        22 ~~l~~~i~~~lp~~~~~yvEpF~GggaV~~~~~--~~~~i~ND~n~~Lin~y   71 (284)
T 2dpm_A           22 RQLLPVIRELIPKTYNRYFEPFVGGGALFFDLA--PKDAVINDFNAELINCY   71 (284)
T ss_dssp             GGGHHHHHHHSCSSCSCEEETTCTTCHHHHHHC--CSEEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHhccccCEEEeecCCccHHHHhhh--ccceeeeecchHHHHHH
Confidence            3455666666665 5689999999999988763  36899999999887554

>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*

Probab=81.83  E-value=1.9  Score=38.27  Aligned_cols=47  Identities=15%  Similarity=0.289  Sum_probs=37.7

Q ss_pred             HHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHH
Q psy15742        177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR  225 (342)
Q Consensus       177 e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~  225 (342)
                      ..++..|...+++..+.+|++||+|.++..+.  ..+++..|+++..+.
T Consensus        15 ~~l~~~i~~~~p~~~~yvEpF~Ggg~V~~~~~--~~~~i~ND~n~~lin   61 (278)
T 2g1p_A           15 YPLLDDIKRHLPKGECLVEPFVGAGSVFLNTD--FSRYILADINSDLIS   61 (278)
T ss_dssp             GGGHHHHHHHCCCCSEEEETTCTTCHHHHTCC--CSEEEEEESCHHHHH
T ss_pred             HHHHHHHHHhccccCeEEeeccCccHHHHhhc--ccceEEEeccHHHHH
Confidence            45567777777777899999999999887653  468999999998874

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=81.71  E-value=5.7  Score=34.39  Aligned_cols=75  Identities=12%  Similarity=0.011  Sum_probs=52.4

Q ss_pred             CCeEEeccCCCcHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccccccC-----------CC
Q psy15742        190 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASV-YGVSHKIQFIQGDFFALA-----------PS  253 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~----a~~~~~v~gvD~s~~~l~~a~~n~~~-~gl~~~i~~~~~D~~~~~-----------~~  253 (342)
                      ++++|=.|++ |+++..+    ++.|.+|+.++.+++.++.+...+.. .+- .++.++.+|+.+..           ..
T Consensus         8 ~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            8 EAVAVVTGGS-SGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPG-ARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            5566666655 4555554    44589999999999988887777765 332 25889999987642           11


Q ss_pred             CCccEEEEcCCCC
Q psy15742        254 LQGDVVFLSPPWG  266 (342)
Q Consensus       254 ~~~D~Ii~nPP~~  266 (342)
                      +..|++|.|.-..
T Consensus        86 g~id~lvnnAg~~   98 (265)
T 3lf2_A           86 GCASILVNNAGQG   98 (265)
T ss_dssp             CSCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            4789999987543

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=81.43  E-value=5.4  Score=34.90  Aligned_cols=74  Identities=16%  Similarity=0.104  Sum_probs=50.8

Q ss_pred             CCeEEeccCCCcHHHHHH----HHhCCEEEEEeCC----------------HHHHHHHHHHHHHcCCCCcEEEEEccccc
Q psy15742        190 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDID----------------PAKLRLAQHNASVYGVSHKIQFIQGDFFA  249 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~----a~~~~~v~gvD~s----------------~~~l~~a~~n~~~~gl~~~i~~~~~D~~~  249 (342)
                      ++++|=.|++. +++..+    ++.|.+|+.+|.+                .+.++.....+...+  .++.++.+|+.+
T Consensus        11 ~k~~lVTGas~-gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   87 (286)
T 3uve_A           11 GKVAFVTGAAR-GQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN--RRIVTAEVDVRD   87 (286)
T ss_dssp             TCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred             CCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC--CceEEEEcCCCC
Confidence            56677666654 444444    4459999999987                777776666665554  378999999876


Q ss_pred             cC-----------CCCCccEEEEcCCCC
Q psy15742        250 LA-----------PSLQGDVVFLSPPWG  266 (342)
Q Consensus       250 ~~-----------~~~~~D~Ii~nPP~~  266 (342)
                      ..           ..+..|++|.|.-..
T Consensus        88 ~~~v~~~~~~~~~~~g~id~lv~nAg~~  115 (286)
T 3uve_A           88 YDALKAAVDSGVEQLGRLDIIVANAGIG  115 (286)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence            42           113789999986543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=81.35  E-value=6.6  Score=33.50  Aligned_cols=73  Identities=15%  Similarity=0.003  Sum_probs=53.3

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      ++++|=.|+ +|+++..++    +.|.+|+.+|.+++.++.+.+.+...+-  ++.++.+|+.+..           ..+
T Consensus         9 ~k~vlITGa-s~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T 3qiv_A            9 NKVGIVTGS-GGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGG--TAISVAVDVSDPESAKAMADRTLAEFG   85 (253)
T ss_dssp             TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            556776665 555555554    4589999999999999888887776553  7889999998742           013


Q ss_pred             CccEEEEcCCC
Q psy15742        255 QGDVVFLSPPW  265 (342)
Q Consensus       255 ~~D~Ii~nPP~  265 (342)
                      ..|++|.|.-.
T Consensus        86 ~id~li~~Ag~   96 (253)
T 3qiv_A           86 GIDYLVNNAAI   96 (253)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            78999998754

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=81.26  E-value=6.9  Score=34.24  Aligned_cols=73  Identities=18%  Similarity=0.109  Sum_probs=50.6

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------C
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDI-DPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------S  253 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~-s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~  253 (342)
                      ++++|=.|+ +|+++..++    +.|.+|+.++. +++.++.....+...+.  ++.++.+|+.+...           .
T Consensus        29 ~k~~lVTGa-s~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           29 RPVAIVTGG-RRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGA--RVIFLRADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTC--CEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred             CCEEEEecC-CCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            556665555 455555544    45899999995 78777777777766653  78999999987531           1


Q ss_pred             CCccEEEEcCCC
Q psy15742        254 LQGDVVFLSPPW  265 (342)
Q Consensus       254 ~~~D~Ii~nPP~  265 (342)
                      +..|++|.|.-.
T Consensus       106 g~iD~lvnnAg~  117 (280)
T 4da9_A          106 GRIDCLVNNAGI  117 (280)
T ss_dssp             SCCCEEEEECC-
T ss_pred             CCCCEEEECCCc
Confidence            368999988654

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=81.24  E-value=7.6  Score=33.27  Aligned_cols=73  Identities=14%  Similarity=-0.053  Sum_probs=50.2

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      ++++|=.| |+|+++..+++    .|.+|+.++.++..++...+.+...+.  ++.++.+|+.+..           ..+
T Consensus         2 ~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            2 KKVALVTG-AGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            34555555 45666665554    589999999999887776666655443  6889999987642           113


Q ss_pred             CccEEEEcCCC
Q psy15742        255 QGDVVFLSPPW  265 (342)
Q Consensus       255 ~~D~Ii~nPP~  265 (342)
                      ..|++|.|.-.
T Consensus        79 ~id~lv~nAg~   89 (256)
T 1geg_A           79 GFDVIVNNAGV   89 (256)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999988643

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=81.20  E-value=7.1  Score=33.60  Aligned_cols=74  Identities=14%  Similarity=-0.013  Sum_probs=53.2

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------CC
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------SL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~~  254 (342)
                      ++++|=.|+ +|+++..++    +.|.+|+.+|.+++.++.....+...+.  ++.++.+|+.+...           .+
T Consensus        12 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g   88 (256)
T 3gaf_A           12 DAVAIVTGA-AAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGG--KAIGLECNVTDEQHREAVIKAALDQFG   88 (256)
T ss_dssp             TCEEEECSC-SSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            556665554 455555554    4599999999999988888877776653  78999999876421           13


Q ss_pred             CccEEEEcCCCC
Q psy15742        255 QGDVVFLSPPWG  266 (342)
Q Consensus       255 ~~D~Ii~nPP~~  266 (342)
                      ..|++|.|.-..
T Consensus        89 ~id~lv~nAg~~  100 (256)
T 3gaf_A           89 KITVLVNNAGGG  100 (256)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            789999986543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=81.04  E-value=2.3  Score=38.69  Aligned_cols=44  Identities=18%  Similarity=0.149  Sum_probs=35.3

Q ss_pred             hcCCCCeEEeccCCC-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q psy15742        186 RCKASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQH  229 (342)
Q Consensus       186 ~~~~~~~vLDlgcGt-G~~~~~~a~~-~~~v~gvD~s~~~l~~a~~  229 (342)
                      .+++|++||-.|+|. |..++.+|+. |.+|+++|.+++.++.+++
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence            456889999999864 6677777775 7889999999998888763

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=80.72  E-value=3.1  Score=36.51  Aligned_cols=74  Identities=12%  Similarity=-0.040  Sum_probs=52.6

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------CC
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------SL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~~  254 (342)
                      ++++|=.|++ |+++..++    +.|.+|+.++.+++.++.....+...+.  ++.++.+|+.+...           .+
T Consensus        32 gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~~g  108 (276)
T 3r1i_A           32 GKRALITGAS-TGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGG--KALPIRCDVTQPDQVRGMLDQMTGELG  108 (276)
T ss_dssp             TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5566665554 55555554    4589999999999888877777766653  78899999876521           13


Q ss_pred             CccEEEEcCCCC
Q psy15742        255 QGDVVFLSPPWG  266 (342)
Q Consensus       255 ~~D~Ii~nPP~~  266 (342)
                      ..|++|.|.-..
T Consensus       109 ~iD~lvnnAg~~  120 (276)
T 3r1i_A          109 GIDIAVCNAGIV  120 (276)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            789999986543

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=80.70  E-value=13  Score=32.70  Aligned_cols=59  Identities=12%  Similarity=-0.088  Sum_probs=41.7

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hCCEEEEEe-CCHHHHHHHHHHHH-HcCCCCcEEEEEccccccC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VCQKVISID-IDPAKLRLAQHNAS-VYGVSHKIQFIQGDFFALA  251 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD-~s~~~l~~a~~n~~-~~gl~~~i~~~~~D~~~~~  251 (342)
                      ++++|=.|+ +|+++..+++    .|.+|+.++ .++..++.+...+. ..+  .++.++.+|+.+..
T Consensus         9 ~k~~lVTGa-s~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~   73 (291)
T 1e7w_A            9 VPVALVTGA-AKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP--NSAITVQADLSNVA   73 (291)
T ss_dssp             CCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSC
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcC--CeeEEEEeecCCcc
Confidence            556665554 5566665554    489999999 99988877766665 444  37889999987653

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=80.59  E-value=7.8  Score=33.64  Aligned_cols=71  Identities=11%  Similarity=-0.015  Sum_probs=47.4

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------CCCCccEEE
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDVVF  260 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~~~~~D~Ii  260 (342)
                      |+++|=-|.+.|.   .+..+++.|.+|+..|.+..  +.+.+.++..|.  ++.++.+|+.+..      ..+..|++|
T Consensus         9 GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~g~iDiLV   84 (247)
T 4hp8_A            9 GRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDGG--NASALLIDFADPLAAKDSFTDAGFDILV   84 (247)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTTC--CEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence            6677766666554   34445556999999998743  233444555554  7889999987653      335789999


Q ss_pred             EcCC
Q psy15742        261 LSPP  264 (342)
Q Consensus       261 ~nPP  264 (342)
                      -|-=
T Consensus        85 NNAG   88 (247)
T 4hp8_A           85 NNAG   88 (247)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            8753

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=80.48  E-value=8.9  Score=32.56  Aligned_cols=72  Identities=11%  Similarity=0.026  Sum_probs=49.2

Q ss_pred             CCCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-------CCCCcc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGD  257 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-------~~~~~D  257 (342)
                      +++++|=.|+ +|+++..++    +.|.+|+.++.++..++.....+.     .++.+..+|+.+..       ..+..|
T Consensus        13 ~~k~vlVTGa-s~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~id   86 (249)
T 3f9i_A           13 TGKTSLITGA-SSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK-----DNYTIEVCNLANKEECSNLISKTSNLD   86 (249)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHTCSCCS
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc-----cCccEEEcCCCCHHHHHHHHHhcCCCC
Confidence            3667776665 455555554    458999999999988776655442     36889999987642       224789


Q ss_pred             EEEEcCCCC
Q psy15742        258 VVFLSPPWG  266 (342)
Q Consensus       258 ~Ii~nPP~~  266 (342)
                      ++|.|.-..
T Consensus        87 ~li~~Ag~~   95 (249)
T 3f9i_A           87 ILVCNAGIT   95 (249)
T ss_dssp             EEEECCC--
T ss_pred             EEEECCCCC
Confidence            999986543

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=80.44  E-value=7.3  Score=33.56  Aligned_cols=73  Identities=16%  Similarity=0.081  Sum_probs=53.9

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-----------CC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------SL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-----------~~  254 (342)
                      ++++|=.|+ +|+++..+++    .|.+|+.++.+++.++.....+...+.  ++.++.+|+.+...           .+
T Consensus        29 ~k~vlITGa-s~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           29 GQVAVVTGA-SRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGG--EAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCC--ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            556766554 5666666554    489999999999999888888776653  78999999876421           13


Q ss_pred             CccEEEEcCCC
Q psy15742        255 QGDVVFLSPPW  265 (342)
Q Consensus       255 ~~D~Ii~nPP~  265 (342)
                      ..|++|.|.-.
T Consensus       106 ~id~lv~~Ag~  116 (262)
T 3rkr_A          106 RCDVLVNNAGV  116 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            68999998654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=80.40  E-value=1.6  Score=40.22  Aligned_cols=44  Identities=20%  Similarity=0.113  Sum_probs=36.1

Q ss_pred             hcCCCCeEEeccCCC-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q psy15742        186 RCKASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQH  229 (342)
Q Consensus       186 ~~~~~~~vLDlgcGt-G~~~~~~a~~-~~~v~gvD~s~~~l~~a~~  229 (342)
                      .+++|++||-.|+|. |..++.+|+. |.+|+++|.+++.++.+++
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            456889999999874 7777777775 8899999999998888764

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=80.37  E-value=6.7  Score=34.02  Aligned_cols=75  Identities=12%  Similarity=-0.082  Sum_probs=51.7

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CC
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDI-DPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  253 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~-s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~  253 (342)
                      ++++|=.|++ |+++..++    +.|.+|+.++. ++...+.....++..+.  ++.++.+|+.+..           ..
T Consensus        29 ~k~vlITGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~  105 (271)
T 4iin_A           29 GKNVLITGAS-KGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGY--KAAVIKFDAASESDFIEAIQTIVQSD  105 (271)
T ss_dssp             CCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            5567766654 55555554    45899999998 66667776666666664  7899999987642           11


Q ss_pred             CCccEEEEcCCCCC
Q psy15742        254 LQGDVVFLSPPWGG  267 (342)
Q Consensus       254 ~~~D~Ii~nPP~~~  267 (342)
                      +..|++|.|.-...
T Consensus       106 g~id~li~nAg~~~  119 (271)
T 4iin_A          106 GGLSYLVNNAGVVR  119 (271)
T ss_dssp             SSCCEEEECCCCCC
T ss_pred             CCCCEEEECCCcCC
Confidence            37899999865443

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=80.34  E-value=6.4  Score=35.21  Aligned_cols=74  Identities=19%  Similarity=0.122  Sum_probs=50.5

Q ss_pred             CCeEEeccCCCcHHHHHH----HHhCCEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEccccccC--
Q psy15742        190 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDID------------PAKLRLAQHNASVYGVSHKIQFIQGDFFALA--  251 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~----a~~~~~v~gvD~s------------~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--  251 (342)
                      ++++|=.|++ |+++..+    ++.|.+|+.+|.+            .+.++.+...+...+.  ++.++.+|+.+..  
T Consensus        46 gk~~lVTGas-~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v  122 (317)
T 3oec_A           46 GKVAFITGAA-RGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGR--RIIARQADVRDLASL  122 (317)
T ss_dssp             TCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHH
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHH
Confidence            5566665654 5555554    4459999999986            6777666666665553  7899999987642  


Q ss_pred             ---------CCCCccEEEEcCCCC
Q psy15742        252 ---------PSLQGDVVFLSPPWG  266 (342)
Q Consensus       252 ---------~~~~~D~Ii~nPP~~  266 (342)
                               ..+..|++|.|.-..
T Consensus       123 ~~~~~~~~~~~g~iD~lVnnAg~~  146 (317)
T 3oec_A          123 QAVVDEALAEFGHIDILVSNVGIS  146 (317)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCC
Confidence                     113789999886543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=80.33  E-value=4.9  Score=31.58  Aligned_cols=67  Identities=13%  Similarity=-0.018  Sum_probs=43.0

Q ss_pred             CeEEeccCCCcHHHHHHHH----hCCEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEE
Q psy15742        191 DVVIDGFCGCGGNTIQFAA----VCQKVISIDID-PAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVF  260 (342)
Q Consensus       191 ~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s-~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii  260 (342)
                      .+++=+|  .|.++..+++    .+..|+.+|.+ ++.++.......     ..+.++.+|..+..     .-...|+|+
T Consensus         4 ~~vlI~G--~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            4 DHFIVCG--HSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             SCEEEEC--CSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CcEEEEC--CCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-----CCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            3566555  4777776654    38899999997 555544443321     24688999986532     224689998


Q ss_pred             EcCC
Q psy15742        261 LSPP  264 (342)
Q Consensus       261 ~nPP  264 (342)
                      +--|
T Consensus        77 ~~~~   80 (153)
T 1id1_A           77 ALSD   80 (153)
T ss_dssp             ECSS
T ss_pred             EecC
Confidence            8655

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=80.19  E-value=2.5  Score=39.22  Aligned_cols=72  Identities=19%  Similarity=0.115  Sum_probs=54.1

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~-~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      +.+||.++.+.|.++..++..  .++.+.-|-.....++.|++.||+++ .+++..  ..+. ....||+|+.-.|..
T Consensus        39 ~~~~~~~~d~~gal~~~~~~~--~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~--~~~~-~~~~~~~v~~~lpk~  111 (375)
T 4dcm_A           39 RGPVLILNDAFGALSCALAEH--KPYSIGDSYISELATRENLRLNGIDESSVKFLD--STAD-YPQQPGVVLIKVPKT  111 (375)
T ss_dssp             CSCEEEECCSSSHHHHHTGGG--CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEE--TTSC-CCSSCSEEEEECCSC
T ss_pred             CCCEEEECCCCCHHHHhhccC--CceEEEhHHHHHHHHHHHHHHcCCCccceEecc--cccc-cccCCCEEEEEcCCC
Confidence            568999999999999988754  45666668888889999999999964 355543  2222 234799999988844

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=80.08  E-value=8.2  Score=33.98  Aligned_cols=75  Identities=15%  Similarity=-0.020  Sum_probs=52.1

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----------
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----------  252 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~~---~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----------  252 (342)
                      ++++|=.|++ |+++..+++    .|.   +|+.++.+.+.++.+.+.+....-..++.++.+|+.+...          
T Consensus        33 ~k~~lVTGas-~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           33 KKTVLITGAS-AGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TCEEEEESTT-SHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCEEEEecCC-ChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            6677766654 555555543    455   9999999999988887777654322378899999876531          


Q ss_pred             -CCCccEEEEcCCC
Q psy15742        253 -SLQGDVVFLSPPW  265 (342)
Q Consensus       253 -~~~~D~Ii~nPP~  265 (342)
                       -+..|++|.|.-.
T Consensus       112 ~~g~iD~lVnnAG~  125 (287)
T 3rku_A          112 EFKDIDILVNNAGK  125 (287)
T ss_dssp             GGCSCCEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence             1378999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	342
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	1e-11
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	3e-10
d2oyra1	250	c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shi	3e-06
d2igta1	309	c.66.1.51 (A:1-309) Putative methyltransferase Atu	3e-06
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	1e-05
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	4e-05
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	4e-05
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	2e-04
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-04
d2dula1	375	c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR	3e-04
d1o9ga_	249	c.66.1.29 (A:) rRNA methyltransferase AviRa {Strep	4e-04
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	9e-04

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 61.7 bits (149), Expect = 1e-11
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 2/114 (1%)

Query: 165 DVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAK 223
           DV    +     +     +A   K  ++V+D F G G  ++  A     KVI+I+ DP  
Sbjct: 84  DVAKIMFSPANVK-ERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYT 142

Query: 224 LRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSI 277
            +    N  +  V  ++     D          D + +       E+   + SI
Sbjct: 143 FKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVRTHEFIPKALSI 196

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 56.4 bits (135), Expect = 3e-10
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 175 TPEKVAQHIAS--RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS 232
           T  +V   I        +DV +D  CG GG T++ A   ++V +ID +P  +   + N  
Sbjct: 17  TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQ 76

Query: 233 VYGVSHKIQFIQGDFFALAPSL-QGDVVFLS 262
            +G+   +  ++GD       +   D+  + 
Sbjct: 77  RHGLGDNVTLMEGDAPEALCKIPDIDIAVVG 107

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 12/115 (10%)

Query: 177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPA--------KLRLAQ 228
           E VA+ +  +      V+D   G G +    A+V  +V  ++ +P           R   
Sbjct: 76  EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYA 135

Query: 229 HNASVYGVSHKIQFIQGDFFALAPSL--QGDVVFLSPPWGGPEYARSSFSIDNIF 281
                  +  ++Q I          +  +  VV+L P +  P   +S+     + 
Sbjct: 136 DAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMF--PHKQKSALVKKEMR 188

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 24/179 (13%)

Query: 178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS 237
           +  ++          V++ F   G  ++  AA   +V  +D     +  A+ N  + G+ 
Sbjct: 121 EWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLE 180

Query: 238 H-KIQFIQGDFFALAPSLQG-----DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLF 291
              I++I  D        +      D++   PP  G       + +            + 
Sbjct: 181 QAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQL------FDHLPLML 234

Query: 292 QVARGISPNVGYYLPRTSDVF------------EIFHDSGKKGSFISLTGRQMFSPSQD 338
            + R I       L  T+               E    +G   +   L  R+     + 
Sbjct: 235 DICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVASGELVIREAGLDGKT 293

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 168 IDGWYSVTPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAK 223
               Y  T   +   +         D+ +D   G G   +Q AA   C+    ++     
Sbjct: 128 SPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIP 187

Query: 224 LRLAQHNASVYGV--------SHKIQFIQGDFFAL---APSLQGDVVFLS 262
            + A+     +            +    +GDF +           V+F++
Sbjct: 188 AKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVN 237

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 178 KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNAS 232
           K    I S       D V++   G GG ++  +       +VIS ++      LA+ N  
Sbjct: 85  KDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYK 144

Query: 233 VYGVSHKIQFIQGD 246
            +  S K+  ++  
Sbjct: 145 HWRDSWKLSHVEEW 158

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 11/134 (8%)

Query: 183 IASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQ 241
           I    K  D V+D  CG GG+ +++      +   +DI    +  A+  A       K+ 
Sbjct: 18  IRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVF 77

Query: 242 FIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNV 301
           F   D +                    +   S FS    F          +         
Sbjct: 78  FRAQDSYGRHM----------DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG 127

Query: 302 GYYLPRTSDVFEIF 315
           GY++        I 
Sbjct: 128 GYFIMTVPSRDVIL 141

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 5/93 (5%)

Query: 178 KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNAS 232
             A +I  RC  +    +++   G G  +            +  ++ D   L+ A  N S
Sbjct: 72  IDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS 131

Query: 233 VYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW 265
            +     ++  + D          D V    P 
Sbjct: 132 EFYDIGNVRTSRSDIADFISDQMYDAVIADIPD 164

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 4/84 (4%)

Query: 172 YSVTPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLA 227
           Y          +  +C  K  D  +D   G G   +Q A    C      +I      L 
Sbjct: 197 YGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLT 256

Query: 228 QHNASVYGVSHKIQFIQGDFFALA 251
                      K+  ++ +    +
Sbjct: 257 ILQYEELKKRCKLYGMRLNNVEFS 280

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 16/100 (16%), Positives = 25/100 (25%), Gaps = 18/100 (18%)

Query: 183 IASRCKASDVVIDGFCGCGGNTIQFA--AVCQKVISIDIDPAKLRLAQHNASVYGVSH-- 238
           +        +V+D     G   I+FA     ++V   DI      L + N  +       
Sbjct: 39  VLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELR 98

Query: 239 ------------KIQFIQGDFFALAPSLQG--DVVFLSPP 264
                        I     D   L          + L P 
Sbjct: 99  ESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPF 138

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} Length = 249

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 9/63 (14%), Positives = 15/63 (23%), Gaps = 9/63 (14%)

Query: 213 KVISIDIDPAKLRLA---QHNASVYGVSHKIQFIQGDFFAL------APSLQGDVVFLSP 263
           +           + A   +   +  G +        D F              DVV    
Sbjct: 116 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDL 175

Query: 264 PWG 266
           P+G
Sbjct: 176 PYG 178

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.8 bits (87), Expect = 9e-04
 Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 21/149 (14%)

Query: 167 VIDGWYSVTP--EKVAQHIAS----RCKASDVVIDGFCGCGGNTIQFAAVC--QKVISID 218
           V DG+    P   K+A  I      + +  + V+      G      A +     + +++
Sbjct: 28  VFDGYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVE 87

Query: 219 IDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVF-----LSPPWGGPEYAR 272
                              + I  +  D       S   + V      ++          
Sbjct: 88  YSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKA 144

Query: 273 SSFSIDNIFPEQGGGRRLFQVARGISPNV 301
           ++      F ++ G   +   AR I    
Sbjct: 145 NAEF----FLKEKGEVVIMVKARSIDSTA 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.89
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.68
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.68
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.67
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.66
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.66
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.63
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.62
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.61
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.61
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.61
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.6
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.58
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.58
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.57
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.57
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.55
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.53
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.5
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.5
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.5
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.49
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.48
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.48
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.46
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.45
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.44
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.44
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.43
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.41
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.39
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.39
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.38
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.37
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.37
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.33
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.3
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.29
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.25
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.25
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.25
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.24
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.24
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.2
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.19
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.18
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.16
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.15
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.14
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.13
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.13
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.13
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.12
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	99.11
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	99.09
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.08
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.08
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.08
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	99.07
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.06
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.03
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.01
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.98
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.97
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.97
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.94
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.91
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.9
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.89
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.89
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.88
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.88
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.86
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.83
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.83
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.81
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.74
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.68
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.68
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.68
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.67
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.63
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.59
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.58
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.52
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.48
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.42
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.36
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.26
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.21
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.18
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.16
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.1
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.08
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	98.0
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.87
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	97.87
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.86
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	97.71
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.4
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	97.39
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.35
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.27
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.25
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.25
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	96.84
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.81
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.51
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.18
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.62
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.99
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.98
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.67
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.22
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	92.83
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	92.65
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	92.62
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	92.22
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.13
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	91.92
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	91.74
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	91.5
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	91.32
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	91.15
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	91.03
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	90.62
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.54
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	90.42
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	90.37
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	90.29
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	90.21
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	90.16
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	89.9
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	89.35
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	89.33
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	89.0
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	88.94
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	88.59
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.56
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	88.34
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.13
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	87.85
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	87.58
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.36
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.17
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	86.9
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	86.85
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	86.73
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	86.65
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	86.6
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	86.41
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	86.39
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	86.18
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	86.06
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	85.6
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	85.3
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	85.18
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	85.13
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	84.47
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	84.18
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.86
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	83.84
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	83.67
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	83.44
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	83.26
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	83.2
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	82.08
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	81.9
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	81.88
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	81.41
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.09
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	80.56
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	80.29
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	80.06

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.4e-23  Score=196.12  Aligned_cols=155  Identities=20%  Similarity=0.266  Sum_probs=122.3

Q ss_pred             cCCCCCCH---HHHHHHHHHhcC--CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy15742        169 DGWYSVTP---EKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI  243 (342)
Q Consensus       169 ~~~~~~~~---e~~~~~i~~~~~--~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~  243 (342)
                      .+||+.++   +.+.+.+.+.++  ++.+|+|++||+|.+++.+|+.+.+|+|+|.++.+++.|++|++.||+. +++|+
T Consensus       187 ~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~  265 (358)
T d1uwva2         187 RDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFY  265 (358)
T ss_dssp             SSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEE
T ss_pred             chhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccc-cceee
Confidence            46888887   566667776654  6789999999999999999999999999999999999999999999994 89999


Q ss_pred             EccccccCC-----CCCccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCCC-HHHHHHh
Q psy15742        244 QGDFFALAP-----SLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSD-VFEIFHD  317 (342)
Q Consensus       244 ~~D~~~~~~-----~~~~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~  317 (342)
                      .+|..+...     ...+|+|++|||+.|..                 . .+..+...-.+.++|+.+.-.+ .+++..+
T Consensus       266 ~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~-----------------~-~~~~l~~~~~~~ivYVSCnp~TlaRDl~~l  327 (358)
T d1uwva2         266 HENLEEDVTKQPWAKNGFDKVLLDPARAGAA-----------------G-VMQQIIKLEPIRIVYVSCNPATLARDSEAL  327 (358)
T ss_dssp             ECCTTSCCSSSGGGTTCCSEEEECCCTTCCH-----------------H-HHHHHHHHCCSEEEEEESCHHHHHHHHHHH
T ss_pred             ecchhhhhhhhhhhhccCceEEeCCCCccHH-----------------H-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHH
Confidence            999987652     24699999999999873                 1 2233333334455555422122 2346666


Q ss_pred             hCCCcEEEEecccCCCCCCCccccC
Q psy15742        318 SGKKGSFISLTGRQMFSPSQDMETV  342 (342)
Q Consensus       318 ~~~~~~i~~i~~~~~fp~t~h~e~~  342 (342)
                      ...||++..++++||||+|+|+|+|
T Consensus       328 ~~~gy~l~~i~~~D~FP~T~HvE~v  352 (358)
T d1uwva2         328 LKAGYTIARLAMLDMFPHTGHLESM  352 (358)
T ss_dssp             HHTTCEEEEEEEECCSTTSSCCEEE
T ss_pred             HHCCCeEeEEEEEecCCCCccEEEE
Confidence            6789999999999999999999986

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.2e-16  Score=142.41  Aligned_cols=93  Identities=23%  Similarity=0.342  Sum_probs=79.2

Q ss_pred             HHHHHHHHHhc-CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC
Q psy15742        177 EKVAQHIASRC-KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS  253 (342)
Q Consensus       177 e~~~~~i~~~~-~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~  253 (342)
                      |.+++.+.... +.+.+|||+|||+|.+++.+|..  ..+|+|+|+|+.+++.|++|++.+++ .+++++++|+++..++
T Consensus        95 E~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~~~~~  173 (274)
T d2b3ta1          95 ECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSALAG  173 (274)
T ss_dssp             HHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTGGGTT
T ss_pred             hhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-ccceeeecccccccCC
Confidence            44444444443 34678999999999999999886  67999999999999999999999999 4799999999988777


Q ss_pred             CCccEEEEcCCCCCCcc
Q psy15742        254 LQGDVVFLSPPWGGPEY  270 (342)
Q Consensus       254 ~~~D~Ii~nPP~~~~~~  270 (342)
                      .+||+|++||||...+.
T Consensus       174 ~~fDlIvsNPPYi~~~~  190 (274)
T d2b3ta1         174 QQFAMIVSNPPYIDEQD  190 (274)
T ss_dssp             CCEEEEEECCCCBCTTC
T ss_pred             CceeEEEecchhhhhhh
Confidence            79999999999987643

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.68  E-value=1.8e-16  Score=144.55  Aligned_cols=147  Identities=16%  Similarity=0.178  Sum_probs=100.7

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccC-----CCCCccEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA-----PSLQGDVV  259 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~-----~~~~~D~I  259 (342)
                      +.+|.+|||+|||+|+++++++.. +.+|++||+|+.++++|++|++.||++ ++++++++|+++++     ...+||+|
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            345889999999999999999887 458999999999999999999999985 58999999998875     34589999


Q ss_pred             EEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCCC---CHHHHHHh-----hCCCcEEEEec--c
Q psy15742        260 FLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTS---DVFEIFHD-----SGKKGSFISLT--G  329 (342)
Q Consensus       260 i~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~l~~~-----~~~~~~i~~i~--~  329 (342)
                      ++|||.-+.+. +...+..+-+..     .+....+.+.+++.+++++++   ....+...     ...+..+..+.  |
T Consensus       222 i~DPP~f~~~~-~~~~~~~~~~~~-----L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~~~~~  295 (317)
T d2b78a2         222 IIDPPSFARNK-KEVFSVSKDYHK-----LIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDLQQLP  295 (317)
T ss_dssp             EECCCCC------CCCCHHHHHHH-----HHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred             EEcChhhccch-hHHHHHHHHHHH-----HHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEeccCC
Confidence            99999544321 111222111111     333445567777777774443   44433221     13344555554  4


Q ss_pred             cCCCCCCCccc
Q psy15742        330 RQMFSPSQDME  340 (342)
Q Consensus       330 ~~~fp~t~h~e  340 (342)
                      .| ||.+.|++
T Consensus       296 ~D-fP~~~~~p  305 (317)
T d2b78a2         296 SD-FAVNVQDE  305 (317)
T ss_dssp             TT-SCCCTTCG
T ss_pred             CC-CCCCCCCC
Confidence            44 89988875

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.67  E-value=2.1e-17  Score=149.22  Aligned_cols=81  Identities=21%  Similarity=0.267  Sum_probs=72.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccccC-----CCCCccEEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFALA-----PSLQGDVVFL  261 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~-~i~~~~~D~~~~~-----~~~~~D~Ii~  261 (342)
                      .++.+|||+|||||+++++++..|.+|++||.|+.++++|++|++.||+.+ +++|+++|+++++     ...+||+||+
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil  210 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  210 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence            447899999999999999999998899999999999999999999999864 6999999999875     2458999999


Q ss_pred             cCCCCCC
Q psy15742        262 SPPWGGP  268 (342)
Q Consensus       262 nPP~~~~  268 (342)
                      |||.-+.
T Consensus       211 DPP~f~~  217 (309)
T d2igta1         211 DPPKFGR  217 (309)
T ss_dssp             CCCSEEE
T ss_pred             CCCcccc
Confidence            9995544

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=6.9e-17  Score=134.61  Aligned_cols=88  Identities=20%  Similarity=0.349  Sum_probs=72.1

Q ss_pred             HHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---CCCCCc
Q psy15742        180 AQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQG  256 (342)
Q Consensus       180 ~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~---~~~~~~  256 (342)
                      .+++...+.+|.+|||+|||+|.++++++..|.+++++|.|+.+++.+++|++.+++.+++....+|....   ....+|
T Consensus        32 f~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~f  111 (171)
T d1ws6a1          32 FDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERF  111 (171)
T ss_dssp             HHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCE
T ss_pred             HHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCcc
Confidence            34555566778899999999999999999999999999999999999999999999965555555554321   244689


Q ss_pred             cEEEEcCCCCC
Q psy15742        257 DVVFLSPPWGG  267 (342)
Q Consensus       257 D~Ii~nPP~~~  267 (342)
                      |+|++||||+.
T Consensus       112 D~If~DPPY~~  122 (171)
T d1ws6a1         112 TVAFMAPPYAM  122 (171)
T ss_dssp             EEEEECCCTTS
T ss_pred             ceeEEcccccc
Confidence            99999999975

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.66  E-value=9e-17  Score=131.34  Aligned_cols=80  Identities=19%  Similarity=0.301  Sum_probs=72.2

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEEcCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPW  265 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~nPP~  265 (342)
                      +|.+|||+|||||.++++++.+ +.+|+++|.|+.+++.+++|++.+++.++++++++|+.++.  ...+||+|++||||
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy   93 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY   93 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence            3789999999999999999887 56999999999999999999999999888999999998864  45689999999998


Q ss_pred             CCC
Q psy15742        266 GGP  268 (342)
Q Consensus       266 ~~~  268 (342)
                      ...
T Consensus        94 ~~~   96 (152)
T d2esra1          94 AKE   96 (152)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            644

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.63  E-value=9.2e-16  Score=130.99  Aligned_cols=76  Identities=22%  Similarity=0.365  Sum_probs=68.7

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      .|.+|||+|||||.+++.++..| .+|+|+|+|+.+++.|++|++.++.  +.+++.+|+.++  +.+||+|++||||+.
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~--~~~fD~Vi~nPP~~~  121 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF--NSRVDIVIMNPPFGS  121 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC--CCCCSEEEECCCCSS
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhh--CCcCcEEEEcCcccc
Confidence            47899999999999999998885 6899999999999999999999887  689999999887  457999999999975


Q ss_pred             C
Q psy15742        268 P  268 (342)
Q Consensus       268 ~  268 (342)
                      .
T Consensus       122 ~  122 (201)
T d1wy7a1         122 Q  122 (201)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.62  E-value=2.1e-15  Score=127.17  Aligned_cols=81  Identities=23%  Similarity=0.378  Sum_probs=73.6

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      +.++++|||+|||+|.+++.+|+.+.+|+|+|+|+.+++.|++|++.+|+.++++++++|+.+.. +...||.|+++.+.
T Consensus        31 ~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~  110 (186)
T d1l3ia_          31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG  110 (186)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT
T ss_pred             CCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCcc
Confidence            45799999999999999999999888999999999999999999999999889999999998875 44689999999886


Q ss_pred             CC
Q psy15742        266 GG  267 (342)
Q Consensus       266 ~~  267 (342)
                      +.
T Consensus       111 ~~  112 (186)
T d1l3ia_         111 GE  112 (186)
T ss_dssp             TC
T ss_pred             cc
Confidence            43

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=6e-16  Score=141.34  Aligned_cols=142  Identities=15%  Similarity=0.212  Sum_probs=99.6

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEEcCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPP  264 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~nPP  264 (342)
                      |++|||+|||+|++++++|..+.+|+++|+|+.++++|++|++.+|+ ++++++++|++++.     ...+||+|++|||
T Consensus       146 g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP  224 (318)
T d1wxxa2         146 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEKEGERFDLVVLDPP  224 (318)
T ss_dssp             EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence            78999999999999999998889999999999999999999999999 47999999998863     3458999999999


Q ss_pred             CCCCccccccccccccCcCCCCchhhhHhhhccCCCceeecCCC---CCHHHHH-------HhhCCCcEEEEecccCC-C
Q psy15742        265 WGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRT---SDVFEIF-------HDSGKKGSFISLTGRQM-F  333 (342)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~l~-------~~~~~~~~i~~i~~~~~-f  333 (342)
                      +...+.    .++......  -...+......+.|++.+++.++   .....+.       ...++.++++....... |
T Consensus       225 ~~~~~~----~~~~~~~~~--~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~~~~~~~~Dh  298 (318)
T d1wxxa2         225 AFAKGK----KDVERAYRA--YKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEKRGQPFDH  298 (318)
T ss_dssp             CSCCST----TSHHHHHHH--HHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEECCCTTS
T ss_pred             ccccch----HHHHHHHHH--HHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEEEecCCCCCC
Confidence            765432    122111111  01133345556677777766333   3333222       23456677776655443 6


Q ss_pred             CCCCc
Q psy15742        334 SPSQD  338 (342)
Q Consensus       334 p~t~h  338 (342)
                      |...+
T Consensus       299 P~~~~  303 (318)
T d1wxxa2         299 PVLLN  303 (318)
T ss_dssp             CCBTT
T ss_pred             CCCCC
Confidence            65544

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.61  E-value=2e-15  Score=138.30  Aligned_cols=84  Identities=32%  Similarity=0.437  Sum_probs=74.5

Q ss_pred             HhcCCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccE
Q psy15742        185 SRCKASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDV  258 (342)
Q Consensus       185 ~~~~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~  258 (342)
                      ..+++|.+|||+|||+|++++.+|..| .+|+++|+|+.+++.|++|++.||+.++++++++|++++.     ...+||+
T Consensus       141 ~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~  220 (324)
T d2as0a2         141 KWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDI  220 (324)
T ss_dssp             GGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCc
Confidence            345678999999999999999999884 6899999999999999999999999878999999998764     3468999


Q ss_pred             EEEcCCCCCC
Q psy15742        259 VFLSPPWGGP  268 (342)
Q Consensus       259 Ii~nPP~~~~  268 (342)
                      |++|||+...
T Consensus       221 Vi~DpP~~~~  230 (324)
T d2as0a2         221 VVLDPPAFVQ  230 (324)
T ss_dssp             EEECCCCSCS
T ss_pred             hhcCCccccC
Confidence            9999997654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.61  E-value=2.8e-15  Score=127.19  Aligned_cols=81  Identities=20%  Similarity=0.354  Sum_probs=74.2

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~-~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      .++.+|||+|||+|.+++.+++.+.+|+++|+|+.+++.|++|++.+++.. +++++.+|+.+..++.+||+|++||||+
T Consensus        51 ~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~~~p~~  130 (194)
T d1dusa_          51 DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIR  130 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCST
T ss_pred             CCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEEEEcccEE
Confidence            458899999999999999999999999999999999999999999999853 6999999999877778999999999987


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       131 ~~  132 (194)
T d1dusa_         131 AG  132 (194)
T ss_dssp             TC
T ss_pred             ec
Confidence            64

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.60  E-value=9.3e-16  Score=129.94  Aligned_cols=72  Identities=26%  Similarity=0.384  Sum_probs=62.3

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      .|++|||+|||||.+++.++..| .+|+|+|+|+.+++.|++|+.      +++++++|+.++  +++||+|++||||+.
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l--~~~fD~Vi~NPPfg~  119 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI--SGKYDTWIMNPPFGS  119 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC--CCCEEEEEECCCC--
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhhc--CCcceEEEeCcccch
Confidence            37899999999999999998874 689999999999999999974      678999999886  457999999999975


Q ss_pred             C
Q psy15742        268 P  268 (342)
Q Consensus       268 ~  268 (342)
                      .
T Consensus       120 ~  120 (197)
T d1ne2a_         120 V  120 (197)
T ss_dssp             -
T ss_pred             h
Confidence            3

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.58  E-value=2.5e-15  Score=126.24  Aligned_cols=81  Identities=26%  Similarity=0.379  Sum_probs=72.1

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEEc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLS  262 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~n  262 (342)
                      +|.+|||+|||||.++++++.+ +.+|++||.|+.+++.+++|++..+..++++++++|+.++.     ...+||+|++|
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflD  120 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD  120 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEec
Confidence            4789999999999999999988 55899999999999999999999998779999999998764     34589999999


Q ss_pred             CCCCCCc
Q psy15742        263 PPWGGPE  269 (342)
Q Consensus       263 PP~~~~~  269 (342)
                      |||....
T Consensus       121 PPY~~~~  127 (182)
T d2fhpa1         121 PPYAKQE  127 (182)
T ss_dssp             CCGGGCC
T ss_pred             hhhhhhH
Confidence            9997543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=1.5e-15  Score=134.02  Aligned_cols=94  Identities=26%  Similarity=0.257  Sum_probs=83.8

Q ss_pred             cCCCCCCHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q psy15742        169 DGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF  248 (342)
Q Consensus       169 ~~~~~~~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~  248 (342)
                      ++..++|+..+++.+....++|.+|||+|||+|.+++.+++.|.+|+|+|+|+.+++.|++|++.+|+  +++++++|+.
T Consensus       100 GTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~  177 (254)
T d2nxca1         100 GTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLE  177 (254)
T ss_dssp             --CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHH
T ss_pred             CccccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCC--ceeEEecccc
Confidence            44566677899999999999999999999999999999999899999999999999999999999999  5689999998


Q ss_pred             ccCCCCCccEEEEcCC
Q psy15742        249 ALAPSLQGDVVFLSPP  264 (342)
Q Consensus       249 ~~~~~~~~D~Ii~nPP  264 (342)
                      +..+.++||+|++|..
T Consensus       178 ~~~~~~~fD~V~ani~  193 (254)
T d2nxca1         178 AALPFGPFDLLVANLY  193 (254)
T ss_dssp             HHGGGCCEEEEEEECC
T ss_pred             ccccccccchhhhccc
Confidence            8777779999999854

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=4.8e-15  Score=124.61  Aligned_cols=78  Identities=15%  Similarity=0.291  Sum_probs=70.0

Q ss_pred             CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEEEEcCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWG  266 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~Ii~nPP~~  266 (342)
                      +.+|||+|||||.++++++.+ +.+|++||.|+.+++.+++|++..+. .+++++++|+++++  ...+||+|++||||.
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~  122 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  122 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeecccccccccccccCEEEEcCccc
Confidence            679999999999999999887 56899999999999999999999887 47899999999875  345899999999998


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       123 ~~  124 (183)
T d2fpoa1         123 RG  124 (183)
T ss_dssp             TT
T ss_pred             cc
Confidence            64

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.57  E-value=7e-15  Score=130.26  Aligned_cols=86  Identities=21%  Similarity=0.276  Sum_probs=77.6

Q ss_pred             HHHhcCCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742        183 IASRCKASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  261 (342)
Q Consensus       183 i~~~~~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~  261 (342)
                      +...+++|.+|||+|||+|.+++.+|+.+ .+|+++|+|+.+++.+++|++.||+.++++++++|+.++.+.+.||.|++
T Consensus       101 i~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~  180 (260)
T d2frna1         101 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILM  180 (260)
T ss_dssp             HHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEE
T ss_pred             HHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEE
Confidence            34445779999999999999999999885 69999999999999999999999998889999999999988889999999


Q ss_pred             cCCCCCC
Q psy15742        262 SPPWGGP  268 (342)
Q Consensus       262 nPP~~~~  268 (342)
                      |||....
T Consensus       181 ~~p~~~~  187 (260)
T d2frna1         181 GYVVRTH  187 (260)
T ss_dssp             CCCSSGG
T ss_pred             CCCCchH
Confidence            9996544

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=2.5e-14  Score=126.89  Aligned_cols=80  Identities=21%  Similarity=0.300  Sum_probs=71.7

Q ss_pred             CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEEcCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPWG  266 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~nPP~~  266 (342)
                      ..+++|+|||+|..++.+++. ..+|+|+|+|+.+++.|++|++.+++.+++.+..+|+.+..+  .++||+|++||||.
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI  190 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV  190 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred             ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence            458999999999999999876 789999999999999999999999998889999999988653  35899999999999


Q ss_pred             CCc
Q psy15742        267 GPE  269 (342)
Q Consensus       267 ~~~  269 (342)
                      ..+
T Consensus       191 ~~~  193 (271)
T d1nv8a_         191 KSS  193 (271)
T ss_dssp             CGG
T ss_pred             Ccc
Confidence            653

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.5e-14  Score=127.02  Aligned_cols=80  Identities=21%  Similarity=0.169  Sum_probs=72.5

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      +++|.+|||+|||+|..+..+++. +.+|+|||+|+.+++.|++++..+|+.++++|+++|+.++.++++||+|++.--.
T Consensus        31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  110 (245)
T d1nkva_          31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGAT  110 (245)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESCG
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCceeEEEEEehh
Confidence            568999999999999999999886 7899999999999999999999999988899999999998777899999985444


Q ss_pred             C
Q psy15742        266 G  266 (342)
Q Consensus       266 ~  266 (342)
                      .
T Consensus       111 ~  111 (245)
T d1nkva_         111 W  111 (245)
T ss_dssp             G
T ss_pred             h
Confidence            3

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.50  E-value=3.1e-14  Score=127.49  Aligned_cols=126  Identities=11%  Similarity=0.064  Sum_probs=93.6

Q ss_pred             hhhhcCcchhHHhhccchhhhccCcccccCCccccccCHHHHHHHHHHHhhcccccccCCCCCCHHHHHHHHHHh--cCC
Q psy15742        112 EEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASR--CKA  189 (342)
Q Consensus       112 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~i~~~--~~~  189 (342)
                      .||+.++++++.|.+....++.   +++-+..    .+.++.   ....                   ++.+++.  +++
T Consensus         2 aHYD~~~~fy~~~ld~~m~YS~---~~~~~~~----~tL~~A---Q~~k-------------------~~~~~~~l~l~~   52 (280)
T d2fk8a1           2 AHYDVSDDFFALFQDPTRTYSC---AYFEPPE----LTLEEA---QYAK-------------------VDLNLDKLDLKP   52 (280)
T ss_dssp             GGGCCCHHHHTTTSCTTCCCSC---CCCSSTT----CCHHHH---HHHH-------------------HHHHHTTSCCCT
T ss_pred             CCccCcHHHHHHhCCCCCcEee---EEeCCCC----CCHHHH---HHHH-------------------HHHHHHHcCCCC
Confidence            4788888898999887665543   2222211    122221   1111                   1333433  468


Q ss_pred             CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~  268 (342)
                      |.+|||+|||+|+++..+++. +.+|+|+|+|+.+++.|+++++..|+..++.+...|..++  .++||.|++---+.+.
T Consensus        53 g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--~~~fD~i~si~~~eh~  130 (280)
T d2fk8a1          53 GMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--AEPVDRIVSIEAFEHF  130 (280)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--CCCCSEEEEESCGGGT
T ss_pred             CCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh--ccchhhhhHhhHHHHh
Confidence            999999999999999999987 8999999999999999999999999988899999998876  4589999996666554

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.50  E-value=5.3e-14  Score=126.43  Aligned_cols=131  Identities=11%  Similarity=0.058  Sum_probs=96.7

Q ss_pred             CCCCChhhhcCcchhHHhhccchhhhccCcccccCCccccccCHHHHHHHHHHHhhcccccccCCCCCCHHHHHHHHHHh
Q psy15742        107 LENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASR  186 (342)
Q Consensus       107 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~i~~~  186 (342)
                      .+++..+|+..++++..|.+....++.   +++-+..    .+.++.   ...                   .++.+++.
T Consensus         6 ~~~i~~HYD~~~~fy~~~Lg~~~~YS~---~~~~~~~----~tL~~A---q~~-------------------k~~~~~~~   56 (291)
T d1kpia_           6 VEAVRSHYDKSNEFFKLWLDPSMTYSC---AYFERPD----MTLEEA---QYA-------------------KRKLALDK   56 (291)
T ss_dssp             HHHHHHHHTSCHHHHHHHSCTTCCCSC---CCCSSTT----CCHHHH---HHH-------------------HHHHHHHT
T ss_pred             HhHHHHhcCCCHHHHHHhcCCCCCeee---EEecCCC----CCHHHH---HHH-------------------HHHHHHHh
Confidence            345667899999999999886554433   3322211    122221   111                   12333433


Q ss_pred             --cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        187 --CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       187 --~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                        +++|.+|||+|||+|++++++|+. +.+|+|+++|+++++.|++.++..|+.+++++...|....  +++||.|++--
T Consensus        57 l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~--~~~fD~i~sie  134 (291)
T d1kpia_          57 LNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPVDRIVSLG  134 (291)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCCSEEEEES
T ss_pred             cCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc--ccccceEeech
Confidence              468999999999999999999876 9999999999999999999999999988999999998643  56899999976


Q ss_pred             CCCCC
Q psy15742        264 PWGGP  268 (342)
Q Consensus       264 P~~~~  268 (342)
                      -+.+.
T Consensus       135 ~~eH~  139 (291)
T d1kpia_         135 AFEHF  139 (291)
T ss_dssp             CGGGT
T ss_pred             hHHhc
Confidence            65443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.50  E-value=1.8e-14  Score=126.38  Aligned_cols=72  Identities=19%  Similarity=0.210  Sum_probs=66.5

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  261 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~  261 (342)
                      .++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.|++++...++  +++++++|+.++...++||+|+|
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~i~~  107 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINRKFDLITC  107 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCSCCEEEEEE
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCc--cceeeccchhhhcccccccccce
Confidence            3467999999999999999999999999999999999999999988887  79999999999876779999998

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.49  E-value=2.4e-14  Score=124.71  Aligned_cols=80  Identities=25%  Similarity=0.342  Sum_probs=72.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      +++|.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++++..+++ +++.++++|+.+++ ++++||+|++.-.+
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   92 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDDSFDIITCRYAA   92 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccc-ccccccccccccccccccccceeeeecee
Confidence            56899999999999999999999999999999999999999999999998 47999999999876 67799999996554


Q ss_pred             CC
Q psy15742        266 GG  267 (342)
Q Consensus       266 ~~  267 (342)
                      +.
T Consensus        93 ~~   94 (234)
T d1xxla_          93 HH   94 (234)
T ss_dssp             GG
T ss_pred             ec
Confidence            43

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.48  E-value=4.6e-14  Score=126.47  Aligned_cols=132  Identities=8%  Similarity=0.067  Sum_probs=97.1

Q ss_pred             CCCCCChhhhcCcchhHHhhccchhhhccCcccccCCccccccCHHHHHHHHHHHhhcccccccCCCCCCHHHHHHHHHH
Q psy15742        106 DLENVPEEIWANPYLNKYYQQRYLYWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIAS  185 (342)
Q Consensus       106 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~i~~  185 (342)
                      +..++..+|+..++++..|.+....++.   +++-+..    .+.++.....                      .+.+++
T Consensus         6 ~~~~i~~HYD~~~~fy~~~Lg~~~~YS~---g~~~~~~----~tL~eAQ~~k----------------------~~~~~~   56 (285)
T d1kpga_           6 HFANVQAHYDLSDDFFRLFLDPTQTYSC---AYFERDD----MTLQEAQIAK----------------------IDLALG   56 (285)
T ss_dssp             CHHHHHHHHTSCHHHHTTTSCTTCCCSC---CCCSSTT----CCHHHHHHHH----------------------HHHHHT
T ss_pred             cHHHHHHhcCCcHHHHHHhCCCCCcEee---EEeCCCC----CCHHHHHHHH----------------------HHHHHH
Confidence            3446667898889998888886554433   3332211    1222221111                      133333


Q ss_pred             h--cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEc
Q psy15742        186 R--CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS  262 (342)
Q Consensus       186 ~--~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~n  262 (342)
                      .  +++|.+|||+|||+|++++++|+. |.+|+|+++|++.++.|+++++..|+.+++++..+|+.+++  ++||.|++-
T Consensus        57 ~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~fD~i~si  134 (285)
T d1kpga_          57 KLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSI  134 (285)
T ss_dssp             TTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCSEEEEE
T ss_pred             HcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--ccccceeee
Confidence            3  468999999999999999998887 99999999999999999999999999889999999998773  589999986


Q ss_pred             CCCCCC
Q psy15742        263 PPWGGP  268 (342)
Q Consensus       263 PP~~~~  268 (342)
                      --+.+.
T Consensus       135 ~~~eh~  140 (285)
T d1kpga_         135 GAFEHF  140 (285)
T ss_dssp             SCGGGT
T ss_pred             hhhhhc
Confidence            555443

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=9.6e-14  Score=122.18  Aligned_cols=79  Identities=16%  Similarity=0.112  Sum_probs=68.2

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-------CCCCccEEE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDVVF  260 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-------~~~~~D~Ii  260 (342)
                      ..++||+|||+|.+++.+|..  +.+++|+|+|+.+++.|++|++.+++.+++.+++.+.....       ..++||+|+
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~iv  141 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM  141 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEE
Confidence            458999999999999999886  89999999999999999999999999889999987654432       235799999


Q ss_pred             EcCCCCCC
Q psy15742        261 LSPPWGGP  268 (342)
Q Consensus       261 ~nPP~~~~  268 (342)
                      |||||...
T Consensus       142 sNPPY~~~  149 (250)
T d2h00a1         142 CNPPFFAN  149 (250)
T ss_dssp             ECCCCC--
T ss_pred             ecCccccc
Confidence            99999964

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.46  E-value=2.1e-13  Score=115.70  Aligned_cols=79  Identities=22%  Similarity=0.167  Sum_probs=72.3

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCCc
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~~  269 (342)
                      +++|||+|||+|..+..+++.+.+|+|+|+|+.+++.|+.+++..+++ ++++..+|+.+...+++||+|+++..++...
T Consensus        31 ~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~I~~~~~~~~~~  109 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTFDGEYDFILSTVVMMFLE  109 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCCCCCEEEEEEESCGGGSC
T ss_pred             CCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccccccccEEEEeeeeecCC
Confidence            449999999999999999999999999999999999999999999984 7999999999888788999999988877653

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.45  E-value=1.8e-13  Score=118.44  Aligned_cols=81  Identities=21%  Similarity=0.263  Sum_probs=71.3

Q ss_pred             hcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCC
Q psy15742        186 RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  264 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP  264 (342)
                      .++++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|+.++...+. ++++++++|+.+++ ++++||+|++.--
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~~~~~fD~v~~~~~   90 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDERFHIVTCRIA   90 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTCEEEEEEESC
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccc-cccccccccccccccccccccccccccc
Confidence            356789999999999999999999999999999999999999999999987 48999999999986 6679999999655


Q ss_pred             CCC
Q psy15742        265 WGG  267 (342)
Q Consensus       265 ~~~  267 (342)
                      ++.
T Consensus        91 l~~   93 (231)
T d1vl5a_          91 AHH   93 (231)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            443

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.44  E-value=2.3e-13  Score=114.11  Aligned_cols=79  Identities=23%  Similarity=0.341  Sum_probs=68.4

Q ss_pred             CCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccccC----CCCCccEEEEcC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFALA----PSLQGDVVFLSP  263 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~-~i~~~~~D~~~~~----~~~~~D~Ii~nP  263 (342)
                      +.+|||+|||||.++++++.+ +.+|+.||.|..+++..++|++..++.+ ...+...|+.++.    ...+||+|++||
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP  123 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP  123 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred             cceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEech
Confidence            679999999999999999988 5699999999999999999999998753 5788888877654    234799999999


Q ss_pred             CCCCC
Q psy15742        264 PWGGP  268 (342)
Q Consensus       264 P~~~~  268 (342)
                      ||...
T Consensus       124 PY~~~  128 (183)
T d2ifta1         124 PFHFN  128 (183)
T ss_dssp             CSSSC
T ss_pred             hHhhh
Confidence            99764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.44  E-value=9.2e-14  Score=124.44  Aligned_cols=81  Identities=14%  Similarity=0.192  Sum_probs=73.1

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  264 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP  264 (342)
                      ++++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...|+.++++++++|+.+++ ++++||+|++.-.
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  144 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA  144 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccch
Confidence            467899999999999999999986 88999999999999999999999999889999999999986 6679999999655


Q ss_pred             CCC
Q psy15742        265 WGG  267 (342)
Q Consensus       265 ~~~  267 (342)
                      +..
T Consensus       145 l~h  147 (282)
T d2o57a1         145 FLH  147 (282)
T ss_dssp             GGG
T ss_pred             hhh
Confidence            443

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.43  E-value=3.5e-13  Score=115.77  Aligned_cols=79  Identities=25%  Similarity=0.339  Sum_probs=69.5

Q ss_pred             HHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEE
Q psy15742        183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFL  261 (342)
Q Consensus       183 i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~  261 (342)
                      +.+.++++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++++...+.  ++.++++|+.+++ ++++||+|++
T Consensus        31 ~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~~~~~fD~I~~  108 (226)
T d1ve3a1          31 LMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSFEDKTFDYVIF  108 (226)
T ss_dssp             HHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCSCTTCEEEEEE
T ss_pred             HHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccc--cccccccccccccccCcCceEEEE
Confidence            344567788999999999999999999999999999999999999999988775  6789999999876 5679999999


Q ss_pred             cC
Q psy15742        262 SP  263 (342)
Q Consensus       262 nP  263 (342)
                      .-
T Consensus       109 ~~  110 (226)
T d1ve3a1         109 ID  110 (226)
T ss_dssp             ES
T ss_pred             ec
Confidence            53

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.41  E-value=4.1e-13  Score=117.55  Aligned_cols=72  Identities=31%  Similarity=0.466  Sum_probs=66.8

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  261 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~  261 (342)
                      +++.+|||+|||||..+..+++.+.+|+|||+|+.|++.|++++..+++  +++++++|+.+++...+||+|++
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~~~fD~I~~  111 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFKNEFDAVTM  111 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCCSCEEEEEE
T ss_pred             CCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccc--cchheehhhhhcccccccchHhh
Confidence            3467899999999999999999999999999999999999999998887  79999999999886679999998

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.39  E-value=1.3e-12  Score=109.57  Aligned_cols=142  Identities=11%  Similarity=0.071  Sum_probs=92.4

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCcEEEEEccccccCC--C
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV-----------SHKIQFIQGDFFALAP--S  253 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl-----------~~~i~~~~~D~~~~~~--~  253 (342)
                      +++|.+|||+|||+|..+..+|+.|.+|+|+|+|+.|++.|+++++..+.           ...++++++|+.++.+  .
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~   97 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   97 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccc
Confidence            56789999999999999999999999999999999999999999865432           1246788999888752  3


Q ss_pred             CCccEEEEcCCCCCCcccc---ccccccccCcCCCCchhhhHhhhcc--CCCceeecCCCCCHHHHHHhhCCCcEEEEec
Q psy15742        254 LQGDVVFLSPPWGGPEYAR---SSFSIDNIFPEQGGGRRLFQVARGI--SPNVGYYLPRTSDVFEIFHDSGKKGSFISLT  328 (342)
Q Consensus       254 ~~~D~Ii~nPP~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~l~~~~~~~~~i~~i~  328 (342)
                      ..||+|++.--+.......   ....+.+++++  ||..++......  .+...   +-......+..++..++.+..+.
T Consensus        98 ~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkp--gG~l~l~~~~~~~~~~~~p---~~~~~~~el~~l~~~~~~i~~~~  172 (201)
T d1pjza_          98 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQ--ACSGLLITLEYDQALLEGP---PFSVPQTWLHRVMSGNWEVTKVG  172 (201)
T ss_dssp             HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS--EEEEEEEEESSCSSSSSSC---CCCCCHHHHHHTSCSSEEEEEEE
T ss_pred             cceeEEEEEeeeEecchhhhHHHHHHHHHhcCC--CcEEEEEEcccccccCCCc---cccCCHHHHHHHhCCCcEEEEEE
Confidence            4799999865544432211   12223344544  343222111110  00000   11224556777777888887776


Q ss_pred             ccCCC
Q psy15742        329 GRQMF  333 (342)
Q Consensus       329 ~~~~f  333 (342)
                      ..+.+
T Consensus       173 ~~~~~  177 (201)
T d1pjza_         173 GQDTL  177 (201)
T ss_dssp             ESSCT
T ss_pred             Eeccc
Confidence            66544

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.39  E-value=6.8e-12  Score=114.51  Aligned_cols=147  Identities=18%  Similarity=0.129  Sum_probs=94.5

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-------CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVF  260 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-------~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii  260 (342)
                      +++.+|+|+|||+|++.+.+...       ..+++|+|+++.+++.|+.|+..++.  +..+.++|.....+..+||+|+
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~vi  193 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANLLVDPVDVVI  193 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCCCCCCEEEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhccccccccccccccccc
Confidence            34678999999999999998753       23799999999999999999999887  5778899988777778999999


Q ss_pred             EcCCCCCCccccccccccccCcC-C--CCchhhhHhhhccCCCc--eeecCCCC----CHHHHHHhhCCCcEEEEec--c
Q psy15742        261 LSPPWGGPEYARSSFSIDNIFPE-Q--GGGRRLFQVARGISPNV--GYYLPRTS----DVFEIFHDSGKKGSFISLT--G  329 (342)
Q Consensus       261 ~nPP~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~--~~~l~~~~----~~~~l~~~~~~~~~i~~i~--~  329 (342)
                      +||||+................. .  .....+..+...+.+++  .+++|.++    ....+.+.+...+.+..|.  |
T Consensus       194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~lp  273 (328)
T d2f8la1         194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLP  273 (328)
T ss_dssp             EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEECC
T ss_pred             cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEEECC
Confidence            99999753211111111111110 0  01112334445555544  34446543    2334455444555666554  4


Q ss_pred             cCCCCCC
Q psy15742        330 RQMFSPS  336 (342)
Q Consensus       330 ~~~fp~t  336 (342)
                      ..+|++|
T Consensus       274 ~~~F~~~  280 (328)
T d2f8la1         274 ETLFKSE  280 (328)
T ss_dssp             GGGSCC-
T ss_pred             ccccCCC
Confidence            5678765

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.38  E-value=4.3e-13  Score=117.61  Aligned_cols=78  Identities=14%  Similarity=0.120  Sum_probs=71.7

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      +++|.+|||+|||+|.++..+|+.   ..+|+++|.++++++.|++|++.++..+++++.++|+.+..++..||.|++|.
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~  162 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADI  162 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECC
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecC
Confidence            568999999999999999999985   46899999999999999999998876679999999999988778999999998


Q ss_pred             C
Q psy15742        264 P  264 (342)
Q Consensus       264 P  264 (342)
                      |
T Consensus       163 p  163 (250)
T d1yb2a1         163 P  163 (250)
T ss_dssp             S
T ss_pred             C
Confidence            8

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.3e-12  Score=113.34  Aligned_cols=142  Identities=15%  Similarity=0.028  Sum_probs=93.6

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcC----------------CCCcEEEEEccccccC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYG----------------VSHKIQFIQGDFFALA  251 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~g----------------l~~~i~~~~~D~~~~~  251 (342)
                      +++.+|||+|||+|..+..+|+.|.+|+|||+|+.+++.|+++....+                ...+++++++|++++.
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~  123 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLP  123 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhcc
Confidence            457899999999999999999999999999999999999998865321                1247899999998875


Q ss_pred             --CCCCccEEEEcCCCCCCcccc---ccccccccCcCCCCchhhhHhhhccCCCceeecCCCCCHHHHHHhhCCCcEEEE
Q psy15742        252 --PSLQGDVVFLSPPWGGPEYAR---SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVFEIFHDSGKKGSFIS  326 (342)
Q Consensus       252 --~~~~~D~Ii~nPP~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~  326 (342)
                        ..+.||+|+..--++......   ....+.+++++  ||..++.....- +...--=|-..+..++..++.+++.+..
T Consensus       124 ~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp--gG~~~l~~~~~~-~~~~~gpp~~~~~~el~~lf~~~~~i~~  200 (229)
T d2bzga1         124 RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK--KFQYLLCVLSYD-PTKHPGPPFYVPHAEIERLFGKICNIRC  200 (229)
T ss_dssp             GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE--EEEEEEEEEECC-TTTCCCSSCCCCHHHHHHHHTTTEEEEE
T ss_pred             ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC--cceEEEEEcccC-CCCCCCCCCCCCHHHHHHHhcCCCEEEE
Confidence              456899999866555543222   11233444444  443222221110 0000000223467778888888888876


Q ss_pred             ecccCC
Q psy15742        327 LTGRQM  332 (342)
Q Consensus       327 i~~~~~  332 (342)
                      +...+.
T Consensus       201 le~~~~  206 (229)
T d2bzga1         201 LEKVDA  206 (229)
T ss_dssp             EEEEEC
T ss_pred             EEEecc
Confidence            654443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.37  E-value=1.5e-12  Score=112.44  Aligned_cols=87  Identities=16%  Similarity=0.177  Sum_probs=72.6

Q ss_pred             HHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC
Q psy15742        177 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP  252 (342)
Q Consensus       177 e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~  252 (342)
                      +.+...+....+++.+|||+|||||..+..+++.    +.+|+|+|+|+.|++.|+++++..+...++++..+|+.+.+.
T Consensus        27 ~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~  106 (225)
T d1im8a_          27 TAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI  106 (225)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC
T ss_pred             HHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc
Confidence            3344455566788999999999999999999873    679999999999999999999988877789999999987753


Q ss_pred             CCCccEEEEcCC
Q psy15742        253 SLQGDVVFLSPP  264 (342)
Q Consensus       253 ~~~~D~Ii~nPP  264 (342)
                       ..+|+|++.--
T Consensus       107 -~~~d~i~~~~~  117 (225)
T d1im8a_         107 -KNASMVILNFT  117 (225)
T ss_dssp             -CSEEEEEEESC
T ss_pred             -ccceeeEEeee
Confidence             47899998533

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.8e-13  Score=116.90  Aligned_cols=144  Identities=11%  Similarity=0.014  Sum_probs=93.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~  265 (342)
                      .++.+|||+|||+|.++..++.. +.+|+|+|+|+.|++.|++++...+. .+++|+++|+.++. +..+||+|++.--+
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~~~l  137 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWVI  137 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-ccccccccccccccccccccccccccccc
Confidence            34679999999999999988655 77999999999999999999988776 47899999999986 45799999996655


Q ss_pred             CCCcccc---ccccccccCcCCCCchhhhHhhhccCCCceeecCCC----CCHHHHHHhh-CCCcEEEEecccCCCCCC
Q psy15742        266 GGPEYAR---SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRT----SDVFEIFHDS-GKKGSFISLTGRQMFSPS  336 (342)
Q Consensus       266 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~-~~~~~i~~i~~~~~fp~t  336 (342)
                      +......   ....+.+++++  +|..++.-  ........+-...    .....+.+++ ..|++++....+..||..
T Consensus       138 ~h~~~~~~~~~l~~i~~~Lk~--~G~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q~~fP~~  212 (222)
T d2ex4a1         138 GHLTDQHLAEFLRRCKGSLRP--NGIIVIKD--NMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDE  212 (222)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEE--EEEEEEEE--EEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCCTT
T ss_pred             ccchhhhhhhHHHHHHHhcCC--cceEEEEE--cccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEeCCCCcc
Confidence            5432111   11223333433  23222211  1111111111000    1234444443 358899988888888864

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.30  E-value=4.4e-12  Score=111.45  Aligned_cols=82  Identities=22%  Similarity=0.238  Sum_probs=69.7

Q ss_pred             HHHhcCCCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCCCccEE
Q psy15742        183 IASRCKASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVV  259 (342)
Q Consensus       183 i~~~~~~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~~~D~I  259 (342)
                      |..+.+++.+|||+|||+|..+..+++.+ .+|+|+|+|+.|++.|+.++...+...++.+.++|+....  .+.+||+|
T Consensus        18 I~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V   97 (252)
T d1ri5a_          18 IRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVI   97 (252)
T ss_dssp             HHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred             HHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEE
Confidence            34567789999999999999999999874 5899999999999999999988777668999999997654  45689999


Q ss_pred             EEcCC
Q psy15742        260 FLSPP  264 (342)
Q Consensus       260 i~nPP  264 (342)
                      ++.--
T Consensus        98 ~~~~~  102 (252)
T d1ri5a_          98 SSQFS  102 (252)
T ss_dssp             EEESC
T ss_pred             EEcce
Confidence            99533

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.29  E-value=4.5e-12  Score=110.10  Aligned_cols=72  Identities=19%  Similarity=0.168  Sum_probs=60.9

Q ss_pred             HHHhcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEE
Q psy15742        183 IASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFL  261 (342)
Q Consensus       183 i~~~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~  261 (342)
                      +....+++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|+++.    .   ..++.+|+.+++ ++++||+|++
T Consensus        36 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l~~~~~~fD~ii~  108 (246)
T d2avna1          36 LEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKG----V---KNVVEAKAEDLPFPSGAFEAVLA  108 (246)
T ss_dssp             HHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHT----C---SCEEECCTTSCCSCTTCEEEEEE
T ss_pred             HHHhcCCCCEEEEECCCCchhcccccccceEEEEeeccccccccccccc----c---cccccccccccccccccccceee
Confidence            3445667889999999999999999999999999999999999999863    2   236789998875 4679999997

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=7.5e-12  Score=110.71  Aligned_cols=78  Identities=23%  Similarity=0.293  Sum_probs=71.4

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      +++|.+|||+|||+|.++..+|+.   +.+|+|+|+++++++.|++|++.+|+.+++.+...|+....+...+|.|+.|.
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~d~  180 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDV  180 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEecC
Confidence            568999999999999999999986   46999999999999999999999999889999999987766677899999998


Q ss_pred             C
Q psy15742        264 P  264 (342)
Q Consensus       264 P  264 (342)
                      |
T Consensus       181 p  181 (266)
T d1o54a_         181 P  181 (266)
T ss_dssp             S
T ss_pred             C
Confidence            8

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=3.4e-11  Score=103.07  Aligned_cols=78  Identities=21%  Similarity=0.221  Sum_probs=68.4

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS  262 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~n  262 (342)
                      +++|++|||+|||||.++..+|+.   ..+|+++|+++.+++.|++|++..++ +++.++++|..+.. ..++||+|+++
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~~~~~~~~~fD~I~~~  151 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGVPEFSPYDVIFVT  151 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCchHHccccccchhhhhhh
Confidence            567999999999999999999985   46899999999999999999999998 48999999998755 45689999997


Q ss_pred             CCC
Q psy15742        263 PPW  265 (342)
Q Consensus       263 PP~  265 (342)
                      ...
T Consensus       152 ~~~  154 (213)
T d1dl5a1         152 VGV  154 (213)
T ss_dssp             SBB
T ss_pred             ccH
Confidence            653

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.25  E-value=8.5e-12  Score=109.93  Aligned_cols=78  Identities=18%  Similarity=0.165  Sum_probs=69.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHc--CCCCcEEEEEccccccC-CCCCccEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVY--GVSHKIQFIQGDFFALA-PSLQGDVVF  260 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~--gl~~~i~~~~~D~~~~~-~~~~~D~Ii  260 (342)
                      +++|.+|||+|||+|.++..+|+.   ..+|+++|+++++++.|++|++..  +..+++.++++|+.+.. ++..||.|+
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~  173 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAV  173 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEE
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEE
Confidence            578999999999999999999986   469999999999999999999875  34468999999998764 567999999


Q ss_pred             EcCC
Q psy15742        261 LSPP  264 (342)
Q Consensus       261 ~nPP  264 (342)
                      +|-|
T Consensus       174 ldlp  177 (264)
T d1i9ga_         174 LDML  177 (264)
T ss_dssp             EESS
T ss_pred             EecC
Confidence            9977

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=8.9e-12  Score=107.93  Aligned_cols=77  Identities=12%  Similarity=0.005  Sum_probs=65.6

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSP  263 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nP  263 (342)
                      .+|.+|||+|||+|..+..+++. +.+|+|||+|+.+++.|++++...+.  ++.++.+|+....   +.++||.|+.|+
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~i~fD~  129 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYDT  129 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc--ccccccccccccccccccccccceeecc
Confidence            45889999999999999999986 57899999999999999999987664  6888888876543   567999999998


Q ss_pred             CCC
Q psy15742        264 PWG  266 (342)
Q Consensus       264 P~~  266 (342)
                      ...
T Consensus       130 ~~~  132 (229)
T d1zx0a1         130 YPL  132 (229)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            644

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.24  E-value=5.3e-12  Score=112.82  Aligned_cols=80  Identities=16%  Similarity=0.121  Sum_probs=69.7

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      +.++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++++...+.  +++|+++|+.+++...+||+|+++-
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~~~~~fD~v~~~~  102 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELNDKYDIAICHA  102 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCSSCEEEEEEES
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccccccCCceEEEEeh
Confidence            345779999999999999999875   57899999999999999999988776  7999999999877566899999987


Q ss_pred             CCCCC
Q psy15742        264 PWGGP  268 (342)
Q Consensus       264 P~~~~  268 (342)
                      -++..
T Consensus       103 ~l~~~  107 (281)
T d2gh1a1         103 FLLHM  107 (281)
T ss_dssp             CGGGC
T ss_pred             hhhcC
Confidence            66554

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.20  E-value=1.9e-11  Score=107.48  Aligned_cols=143  Identities=9%  Similarity=-0.051  Sum_probs=91.1

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      ++.+|||+|||+|.++..++.. +..|+++|.|+.+++.|++++...   ++++++++|+.++. ++++||+|++.-.++
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~  169 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYDLIVIQWTAI  169 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCCCccceEEeecccc
Confidence            4679999999999999988765 789999999999999999887533   36899999999886 456899999988877


Q ss_pred             CCcccc---ccccccccCcCCCCchhhhHhhhccCCCceeecCCC---CCHHHHHHhh-CCCcEEEEecccCCCCCC
Q psy15742        267 GPEYAR---SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRT---SDVFEIFHDS-GKKGSFISLTGRQMFSPS  336 (342)
Q Consensus       267 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~l~~~~-~~~~~i~~i~~~~~fp~t  336 (342)
                      +.....   ....+.+.+++  ||..++...........+....+   .....+..++ ..|++++....+.-||..
T Consensus       170 hl~d~d~~~~l~~~~~~Lkp--gG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q~~fP~~  244 (254)
T d1xtpa_         170 YLTDADFVKFFKHCQQALTP--NGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWPTD  244 (254)
T ss_dssp             GSCHHHHHHHHHHHHHHEEE--EEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECTTCCTT
T ss_pred             ccchhhhHHHHHHHHHhcCC--CcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEeeCCCCcc
Confidence            653221   12223344433  34333221111111111111111   1223333333 247888888777777753

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.19  E-value=2.4e-11  Score=104.73  Aligned_cols=74  Identities=12%  Similarity=0.075  Sum_probs=64.4

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~  268 (342)
                      +++|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+.+..     ++++++++|+.+...+.+||+|++.--+++.
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~   94 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQLPRRYDNIVLTHVLEHI   94 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCCSSCEEEEEEESCGGGC
T ss_pred             CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc-----cccccccccccccccccccccccccceeEec
Confidence            5689999999999999999989999999999999999998753     4799999999988777899999996554443

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.18  E-value=4.4e-11  Score=101.99  Aligned_cols=77  Identities=8%  Similarity=-0.032  Sum_probs=64.4

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVF  260 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii  260 (342)
                      ++||.+|||+|||+|+.+..+++.  ..+|+|+|+|+.|++.|+++++..+   ++.++.+|+....    ....+|+|+
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~~~~~~vd~v~  130 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYSGIVEKVDLIY  130 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccccccceEEEEE
Confidence            467999999999999999999986  3589999999999999999988764   7999999988754    123678888


Q ss_pred             EcCCCC
Q psy15742        261 LSPPWG  266 (342)
Q Consensus       261 ~nPP~~  266 (342)
                      .|.+..
T Consensus       131 ~~~~~~  136 (209)
T d1nt2a_         131 QDIAQK  136 (209)
T ss_dssp             ECCCST
T ss_pred             ecccCh
Confidence            886643

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=7.5e-11  Score=101.63  Aligned_cols=79  Identities=20%  Similarity=0.136  Sum_probs=67.7

Q ss_pred             hcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCC----CcEEEEEccccccC-CCCCcc
Q psy15742        186 RCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVS----HKIQFIQGDFFALA-PSLQGD  257 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~----~~i~~~~~D~~~~~-~~~~~D  257 (342)
                      .+++|.+|||+|||+|..+..+|+.   ..+|+|+|+++++++.|++|++..++.    +++.++.+|..... +...||
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD  152 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD  152 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence            4578999999999999999998886   569999999999999999999887652    47899999998765 456899


Q ss_pred             EEEEcCC
Q psy15742        258 VVFLSPP  264 (342)
Q Consensus       258 ~Ii~nPP  264 (342)
                      +|+++..
T Consensus       153 ~I~~~~~  159 (224)
T d1i1na_         153 AIHVGAA  159 (224)
T ss_dssp             EEEECSB
T ss_pred             hhhhhcc
Confidence            9999754

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=3.4e-11  Score=109.81  Aligned_cols=80  Identities=21%  Similarity=0.254  Sum_probs=70.7

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      +|.+|||+|||+|.+++.+|+.| .+|+|+|.|+ +++.|+++.+.++..++++++++|+.++. +..+||+|++++...
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~  116 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence            58899999999999999999985 6899999996 77899999999999889999999999886 557899999988765


Q ss_pred             CCc
Q psy15742        267 GPE  269 (342)
Q Consensus       267 ~~~  269 (342)
                      ...
T Consensus       117 ~~~  119 (328)
T d1g6q1_         117 FLL  119 (328)
T ss_dssp             TBS
T ss_pred             eec
Confidence            543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6.4e-11  Score=107.35  Aligned_cols=79  Identities=24%  Similarity=0.333  Sum_probs=66.0

Q ss_pred             hcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHc----------CCCCcEEEEEccccccC-
Q psy15742        186 RCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVY----------GVSHKIQFIQGDFFALA-  251 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~----------gl~~~i~~~~~D~~~~~-  251 (342)
                      .+.+|.+|||+|||+|.++..+|+.   ..+|+++|+++++++.|++|++..          +..+++.+.++|+.+.. 
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~  174 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  174 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence            3678999999999999999999986   468999999999999999999865          33468999999998764 


Q ss_pred             --CCCCccEEEEcCC
Q psy15742        252 --PSLQGDVVFLSPP  264 (342)
Q Consensus       252 --~~~~~D~Ii~nPP  264 (342)
                        +...||.||+|-|
T Consensus       175 ~~~~~~fD~V~LD~p  189 (324)
T d2b25a1         175 DIKSLTFDAVALDML  189 (324)
T ss_dssp             ------EEEEEECSS
T ss_pred             ccCCCCcceEeecCc
Confidence              3458999999977

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.13  E-value=1.6e-10  Score=99.27  Aligned_cols=75  Identities=24%  Similarity=0.213  Sum_probs=65.4

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  264 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP  264 (342)
                      +++|.+|||+|||+|.++..+|+.+.+|+++|+++.+++.|++|+...   .+++++.+|..... +.++||.|+++-.
T Consensus        68 l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~~pfD~Iiv~~a  143 (224)
T d1vbfa_          68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEEKPYDRVVVWAT  143 (224)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred             hcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhhhhHHHHHhhcc
Confidence            567999999999999999999999999999999999999999987643   48999999987643 4568999999644

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.13  E-value=2.5e-10  Score=97.45  Aligned_cols=77  Identities=22%  Similarity=0.259  Sum_probs=68.9

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP  264 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP  264 (342)
                      ++++.+|||+|||||+.+..+|+. +.+|+++|.++..++.|++|++..|+ +|+.++++|..+.. +..+||.|++...
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~~~~pfD~Iiv~~a  154 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPPKAPYDVIIVTAG  154 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCcccCcceeEEeecc
Confidence            567999999999999999999987 77899999999999999999999998 58999999998754 5668999999644

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=3.6e-11  Score=109.14  Aligned_cols=79  Identities=20%  Similarity=0.149  Sum_probs=68.9

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      +|++|||+|||+|.+++.+|+.| .+|+|+|.|+. ...++++++.+++.++++++++|+.++. +..+||+|++++...
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~  111 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY  111 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence            58899999999999999999985 68999999975 5788889999999889999999999986 456899999987755


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       112 ~l  113 (316)
T d1oria_         112 CL  113 (316)
T ss_dssp             TB
T ss_pred             ee
Confidence            43

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.12  E-value=3.5e-10  Score=97.90  Aligned_cols=87  Identities=18%  Similarity=0.274  Sum_probs=71.2

Q ss_pred             HHHHHHhc--CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCc
Q psy15742        180 AQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQG  256 (342)
Q Consensus       180 ~~~i~~~~--~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~  256 (342)
                      ++.+.+..  .++++|||+|||+|.++..+++.+.+|++||+|+.+++.++++...+   ++++++++|+.++. +....
T Consensus        10 ~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~~~~~   86 (235)
T d1qama_          10 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPKNQS   86 (235)
T ss_dssp             HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCSSCC
T ss_pred             HHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhcccccccc
Confidence            34444433  47899999999999999999999999999999999999999877533   48999999999875 33345


Q ss_pred             cEEEEcCCCCCCc
Q psy15742        257 DVVFLSPPWGGPE  269 (342)
Q Consensus       257 D~Ii~nPP~~~~~  269 (342)
                      ..|++|.||...+
T Consensus        87 ~~vv~NLPYnIss   99 (235)
T d1qama_          87 YKIFGNIPYNIST   99 (235)
T ss_dssp             CEEEEECCGGGHH
T ss_pred             ceeeeeehhhhhH
Confidence            5789999997653

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.11  E-value=1.7e-10  Score=108.86  Aligned_cols=96  Identities=24%  Similarity=0.385  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHHHhcC--CCCeEEeccCCCcHHHHHHHHh---------------CCEEEEEeCCHHHHHHHHHHHHHcCC
Q psy15742        174 VTPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV---------------CQKVISIDIDPAKLRLAQHNASVYGV  236 (342)
Q Consensus       174 ~~~e~~~~~i~~~~~--~~~~vLDlgcGtG~~~~~~a~~---------------~~~v~gvD~s~~~l~~a~~n~~~~gl  236 (342)
                      .||..+++.+...+.  ++.+|+|++||+|++.+.+.+.               ...++|+|+++.+...|+.|+..+|.
T Consensus       145 ~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~  224 (425)
T d2okca1         145 FTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI  224 (425)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             ccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC
Confidence            377778888887764  4789999999999999998764               13599999999999999999999987


Q ss_pred             C-CcEEEEEccccccCCCCCccEEEEcCCCCCCc
Q psy15742        237 S-HKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       237 ~-~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~~~  269 (342)
                      . .+..+..+|.....+..+||+|++||||+...
T Consensus       225 ~~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~  258 (425)
T d2okca1         225 GTDRSPIVCEDSLEKEPSTLVDVILANPPFGTRP  258 (425)
T ss_dssp             CSSCCSEEECCTTTSCCSSCEEEEEECCCSSCCC
T ss_pred             ccccceeecCchhhhhcccccceEEecCCCCCCc
Confidence            4 35678899998877777999999999997653

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=99.09  E-value=6e-11  Score=103.05  Aligned_cols=119  Identities=17%  Similarity=0.157  Sum_probs=88.8

Q ss_pred             hhhccCcccccCCccccccCHHHHHHHHHHHhhcccccccCCCCCCHHHHHHHHHHhcCCCCeEEeccCCCcHHHHHHHH
Q psy15742        130 YWSRYDEGILMDEESWYSVTPEKVAQHIASRCKASDVVIDGWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAA  209 (342)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~  209 (342)
                      .++.+..|-.++..+.+...+..++..+..+.-    -..+|-                ++..++|++||+|++.+++|.
T Consensus        11 ~~~d~ssg~~L~~~~~~~~~~~~Laa~il~~al----~l~~w~----------------~~~~LlDPmCGSGTilIEAAl   70 (249)
T d1o9ga_          11 DSSDLACGVVLHSAPGYPAFPVRLATEIFQRAL----ARLPGD----------------GPVTLWDPCCGSGYLLTVLGL   70 (249)
T ss_dssp             CCGGGCTTTSSCCBTTBCCCCHHHHHHHHHHHH----HTSSCC----------------SCEEEEETTCTTSHHHHHHHH
T ss_pred             cHHhhcCCCccccCCCCCCcchHHHHHHHHHHh----hhhcCC----------------CCCceeccccCccHHHHHHHH
Confidence            344445666777777887777766665554431    112222                255799999999999999987


Q ss_pred             hCC------------------------------------------EEEEEeCCHHHHHHH---HHHHHHcCCCCcEEEEE
Q psy15742        210 VCQ------------------------------------------KVISIDIDPAKLRLA---QHNASVYGVSHKIQFIQ  244 (342)
Q Consensus       210 ~~~------------------------------------------~v~gvD~s~~~l~~a---~~n~~~~gl~~~i~~~~  244 (342)
                      .+.                                          .++|.|+++.+++.|   ++|+...|+.+.+++.+
T Consensus        71 ia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~  150 (249)
T d1o9ga_          71 LHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRT  150 (249)
T ss_dssp             HTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEE
T ss_pred             HHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeee
Confidence            421                                          368999999999998   56999999988999999


Q ss_pred             ccccccC------CCCCccEEEEcCCCCCC
Q psy15742        245 GDFFALA------PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       245 ~D~~~~~------~~~~~D~Ii~nPP~~~~  268 (342)
                      .|+++..      +...+++||+||||+..
T Consensus       151 ~d~f~~~~~~~~~~~~~~GlIVtNPPYGER  180 (249)
T d1o9ga_         151 ADVFDPRALSAVLAGSAPDVVLTDLPYGER  180 (249)
T ss_dssp             CCTTCGGGHHHHHTTCCCSEEEEECCGGGS
T ss_pred             cchhccCcchhccCCCCCCEEEeCCCcccc
Confidence            9998654      23468999999999976

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.08  E-value=4.7e-10  Score=95.06  Aligned_cols=106  Identities=12%  Similarity=0.068  Sum_probs=79.4

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPP  264 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nPP  264 (342)
                      +..|||+|||+|.+++.+|+.  ...++|+|+++.++..|.++++..|+ +|+.++++|+..+.   +++++|.|+++-|
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNFS  108 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhcccCchhhhccccccc
Confidence            447999999999999999997  68999999999999999999999999 48999999997653   6678998876533


Q ss_pred             --CCCCccccccccccccC-cCCCCchhhhHhhhccCCCceeecC
Q psy15742        265 --WGGPEYARSSFSIDNIF-PEQGGGRRLFQVARGISPNVGYYLP  306 (342)
Q Consensus       265 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~  306 (342)
                        |....     ..-.++. +.     .+..+.+.+.+++.+++-
T Consensus       109 ~P~~k~~-----h~k~Rl~~~~-----~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         109 DPWPKKR-----HEKRRLTYSH-----FLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             CCCCSGG-----GGGGSTTSHH-----HHHHHHHHHTTSCEEEEE
T ss_pred             cccchhh-----hcchhhhHHH-----HHHHHHHhCCCCcEEEEE
Confidence              22110     1111122 22     455566677787777763

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=1.9e-10  Score=99.11  Aligned_cols=78  Identities=19%  Similarity=0.110  Sum_probs=64.9

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVV  259 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~I  259 (342)
                      +++|.+|||+|||+|+++.++|+.   ..+|+|+|+|+.+++.++.+++..+   ++..+..|.....    ....+|+|
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~~~~~~~~vD~i  147 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEEYRALVPKVDVI  147 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCcccccccccceEEE
Confidence            467999999999999999999986   4799999999999999999987554   5778888876542    23579999


Q ss_pred             EEcCCCCC
Q psy15742        260 FLSPPWGG  267 (342)
Q Consensus       260 i~nPP~~~  267 (342)
                      ++|.|...
T Consensus       148 ~~d~~~~~  155 (227)
T d1g8aa_         148 FEDVAQPT  155 (227)
T ss_dssp             EECCCSTT
T ss_pred             EEEccccc
Confidence            99988543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.9e-10  Score=101.80  Aligned_cols=80  Identities=21%  Similarity=0.161  Sum_probs=68.6

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~-~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      ++++|||+|||+|.+++.+|+.| .+|+|+|.|+.+. .|+++...++..++++++++|+.++. +..+||+|++++...
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~  113 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY  113 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred             CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeee
Confidence            58899999999999999999985 6899999999876 46667777888789999999999986 456999999998876


Q ss_pred             CCc
Q psy15742        267 GPE  269 (342)
Q Consensus       267 ~~~  269 (342)
                      ...
T Consensus       114 ~~~  116 (311)
T d2fyta1         114 FLL  116 (311)
T ss_dssp             TBT
T ss_pred             ecc
Confidence            543

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=99.07  E-value=5.1e-11  Score=101.99  Aligned_cols=85  Identities=25%  Similarity=0.404  Sum_probs=65.4

Q ss_pred             CHHHHHHHHHHhc--CCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q psy15742        175 TPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA  249 (342)
Q Consensus       175 ~~e~~~~~i~~~~--~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~  249 (342)
                      ||..+++.++..+  +++.+|||+|||+|.+...+.+.   ...++|+|+++.++..          .....++++|...
T Consensus         3 TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~   72 (223)
T d2ih2a1           3 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLL   72 (223)
T ss_dssp             CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhc
Confidence            4444555555543  45789999999999999888764   5789999999865432          2356789999998


Q ss_pred             cCCCCCccEEEEcCCCCCCc
Q psy15742        250 LAPSLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       250 ~~~~~~~D~Ii~nPP~~~~~  269 (342)
                      ......||+|++||||....
T Consensus        73 ~~~~~~fd~ii~npP~~~~~   92 (223)
T d2ih2a1          73 WEPGEAFDLILGNPPYGIVG   92 (223)
T ss_dssp             CCCSSCEEEEEECCCCCCBS
T ss_pred             cccccccceecccCcccccc
Confidence            87778999999999998753

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=2.4e-10  Score=102.21  Aligned_cols=73  Identities=21%  Similarity=0.221  Sum_probs=59.6

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC---CcEEEEEcccccc----CCCCCccEEEE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS---HKIQFIQGDFFAL----APSLQGDVVFL  261 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~---~~i~~~~~D~~~~----~~~~~~D~Ii~  261 (342)
                      ++.+|||+|||+|.+++.+|+.|.+|+|+|+|+.|++.|+++....+..   ....+..+|+...    +....||.|++
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~  135 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC  135 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEEE
Confidence            3679999999999999999999999999999999999999999877653   1345566666432    34568999997

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=2.8e-10  Score=100.66  Aligned_cols=79  Identities=18%  Similarity=0.257  Sum_probs=64.9

Q ss_pred             HHHHHHHHhc-CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CC
Q psy15742        178 KVAQHIASRC-KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PS  253 (342)
Q Consensus       178 ~~~~~i~~~~-~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~  253 (342)
                      .+...+.... .++.+|||+|||+|.++..+++.  +..++|+|+|+.|++.|+++.      .+++++++|+.+++ ++
T Consensus        72 ~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~  145 (268)
T d1p91a_          72 AIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSD  145 (268)
T ss_dssp             HHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCT
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCC
Confidence            3344444443 45779999999999999999987  579999999999999998764      37899999999887 56


Q ss_pred             CCccEEEEc
Q psy15742        254 LQGDVVFLS  262 (342)
Q Consensus       254 ~~~D~Ii~n  262 (342)
                      ++||+|++.
T Consensus       146 ~sfD~v~~~  154 (268)
T d1p91a_         146 TSMDAIIRI  154 (268)
T ss_dssp             TCEEEEEEE
T ss_pred             CCEEEEeec
Confidence            789999974

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.01  E-value=2.1e-09  Score=90.90  Aligned_cols=74  Identities=22%  Similarity=0.168  Sum_probs=65.8

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---CCCCccEEEEcCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPP  264 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---~~~~~D~Ii~nPP  264 (342)
                      ...|||+|||+|.+++.+|+.  ...++|+|+++.++..|..++...++ .|+.++++|+.++.   +..++|.|+++-|
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP  110 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  110 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHHhhhccCCceehhccccc
Confidence            447999999999999999997  78999999999999999999999999 48999999987764   5678999988755

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.98  E-value=1.1e-09  Score=95.76  Aligned_cols=78  Identities=22%  Similarity=0.293  Sum_probs=66.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      .+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++++...++.++++++.+|+++..+ .+||+|++.--.
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~-~~~D~v~~~~vl  156 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP-RKADAIILSFVL  156 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-SCEEEEEEESCG
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcc-cchhheeecccc
Confidence            34679999999999999999987  678999998 67999999999999998899999999987544 479999986544


Q ss_pred             CC
Q psy15742        266 GG  267 (342)
Q Consensus       266 ~~  267 (342)
                      +.
T Consensus       157 h~  158 (253)
T d1tw3a2         157 LN  158 (253)
T ss_dssp             GG
T ss_pred             cc
Confidence            43

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.97  E-value=2.2e-10  Score=99.01  Aligned_cols=75  Identities=17%  Similarity=0.150  Sum_probs=59.8

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC--CCC--CccEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSL--QGDVVF  260 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~--~~~--~~D~Ii  260 (342)
                      +++|.+|||+|||+|..+..+|+.  ...|+|+|+|+.|++.|+.++...+   ++.++.+|.....  ...  .+|+++
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~~~~~~v~~i~  148 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE---NIIPILGDANKPQEYANIVEKVDVIY  148 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT---TEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc---ccceEEEeeccCcccccccceeEEee
Confidence            467999999999999999999987  4689999999999999999876543   6788898887754  223  345555


Q ss_pred             EcCC
Q psy15742        261 LSPP  264 (342)
Q Consensus       261 ~nPP  264 (342)
                      .+-+
T Consensus       149 ~~~~  152 (230)
T d1g8sa_         149 EDVA  152 (230)
T ss_dssp             ECCC
T ss_pred             cccc
Confidence            6544

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.6e-09  Score=95.81  Aligned_cols=80  Identities=21%  Similarity=0.299  Sum_probs=70.6

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG  267 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~~  267 (342)
                      .+++.|||+|+|+|.++..+++.+.+|+++|+|+.+++..++++..+...++++++.+|+.+.... .++.||+|.||..
T Consensus        20 ~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~-~~~~vV~NLPY~I   98 (278)
T d1zq9a1          20 RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTCVANLPYQI   98 (278)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-CCSEEEEECCGGG
T ss_pred             CCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh-hhhhhhcchHHHH
Confidence            468899999999999999999999999999999999999999987766656899999999987533 4678999999976


Q ss_pred             C
Q psy15742        268 P  268 (342)
Q Consensus       268 ~  268 (342)
                      .
T Consensus        99 s   99 (278)
T d1zq9a1          99 S   99 (278)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=4.1e-10  Score=102.50  Aligned_cols=88  Identities=17%  Similarity=0.284  Sum_probs=66.4

Q ss_pred             HHHHHHHHHh--cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc-------CC-CCcEEEEE
Q psy15742        177 EKVAQHIASR--CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY-------GV-SHKIQFIQ  244 (342)
Q Consensus       177 e~~~~~i~~~--~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~-------gl-~~~i~~~~  244 (342)
                      ...++.+.+.  ++++++|||+|||+|.+++.+|+.  +.+++|||+|+.+++.|+.+.+..       |+ ..++++++
T Consensus       137 ~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~  216 (328)
T d1nw3a_         137 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER  216 (328)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred             HHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence            3344444444  467899999999999999999876  468999999999999998876543       33 24799999


Q ss_pred             ccccccCC-C--CCccEEEEcCC
Q psy15742        245 GDFFALAP-S--LQGDVVFLSPP  264 (342)
Q Consensus       245 ~D~~~~~~-~--~~~D~Ii~nPP  264 (342)
                      +|+.+.+- +  ..+|+|++|--
T Consensus       217 gd~~~~~~~~~~~~advi~~~~~  239 (328)
T d1nw3a_         217 GDFLSEEWRERIANTSVIFVNNF  239 (328)
T ss_dssp             CCTTSHHHHHHHHHCSEEEECCT
T ss_pred             CcccccccccccCcceEEEEcce
Confidence            99987641 1  13588888643

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.91  E-value=1.1e-10  Score=101.77  Aligned_cols=79  Identities=22%  Similarity=0.336  Sum_probs=67.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      .++++|||+|||+|.++..+++.+.+|++||+|+.+++.++++...   .++++++++|+.++. +...++.|++|.||+
T Consensus        28 ~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~D~l~~~~~~~~~~~vv~NLPY~  104 (245)
T d1yuba_          28 KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQFPNKQRYKIVGNIPYH  104 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTCCCSSEEEEEEECCSS
T ss_pred             CCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhh---ccchhhhhhhhhccccccceeeeEeeeeehh
Confidence            4678999999999999999999999999999999999888766542   248999999999876 345678899999998


Q ss_pred             CCc
Q psy15742        267 GPE  269 (342)
Q Consensus       267 ~~~  269 (342)
                      ..+
T Consensus       105 Ist  107 (245)
T d1yuba_         105 LST  107 (245)
T ss_dssp             SCH
T ss_pred             hhH
Confidence            765

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.90  E-value=1e-09  Score=94.26  Aligned_cols=79  Identities=16%  Similarity=0.187  Sum_probs=65.0

Q ss_pred             hcCCCCeEEeccCCCcHHHHHHHHh----C----CEEEEEeCCHHHHHHHHHHHHHcCCC----CcEEEEEccccccC-C
Q psy15742        186 RCKASDVVIDGFCGCGGNTIQFAAV----C----QKVISIDIDPAKLRLAQHNASVYGVS----HKIQFIQGDFFALA-P  252 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~~~a~~----~----~~v~gvD~s~~~l~~a~~n~~~~gl~----~~i~~~~~D~~~~~-~  252 (342)
                      .++++.+|||+|||||+.+..+++.    |    .+|+++|.++++++.|++|+...++.    .++.++++|..+.. +
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~  156 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP  156 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence            3567999999999999999888875    2    48999999999999999997654321    48999999998754 4


Q ss_pred             CCCccEEEEcCC
Q psy15742        253 SLQGDVVFLSPP  264 (342)
Q Consensus       253 ~~~~D~Ii~nPP  264 (342)
                      ..+||.|+++-.
T Consensus       157 ~~~fD~Iiv~~a  168 (223)
T d1r18a_         157 NAPYNAIHVGAA  168 (223)
T ss_dssp             GCSEEEEEECSC
T ss_pred             ccceeeEEEEee
Confidence            568999999755

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=3e-09  Score=90.70  Aligned_cols=85  Identities=18%  Similarity=0.371  Sum_probs=71.6

Q ss_pred             HHHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--
Q psy15742        178 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--  252 (342)
Q Consensus       178 ~~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--  252 (342)
                      .++..+....++ .+|||+|||+|..++.+|+.   +.+|+++|+++.+++.|+.|++..|+.++++++.+|+.+.++  
T Consensus        46 ~lL~~lv~~~kp-k~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l  124 (214)
T d2cl5a1          46 QIMDAVIREYSP-SLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQL  124 (214)
T ss_dssp             HHHHHHHHHHCC-SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGH
T ss_pred             HHHHHHHHhhCC-CEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccch
Confidence            344455554444 59999999999999999975   679999999999999999999999998899999999987642  


Q ss_pred             -----CCCccEEEEcC
Q psy15742        253 -----SLQGDVVFLSP  263 (342)
Q Consensus       253 -----~~~~D~Ii~nP  263 (342)
                           ...||+|++|-
T Consensus       125 ~~~~~~~~~D~ifiD~  140 (214)
T d2cl5a1         125 KKKYDVDTLDMVFLDH  140 (214)
T ss_dssp             HHHSCCCCEEEEEECS
T ss_pred             hhcccccccceeeecc
Confidence                 34799999983

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=7.6e-09  Score=92.36  Aligned_cols=85  Identities=26%  Similarity=0.381  Sum_probs=70.7

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC----CCccEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS----LQGDVV  259 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~----~~~D~I  259 (342)
                      ..+|.+|||++||.|+-+.++|..   ...|+++|+++..++..++|+++.|+. ++.+...|...+.+.    ..||.|
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~~~~~~fD~V  170 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHEVHYI  170 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcccccccceeeEE
Confidence            456889999999999999988864   578999999999999999999999994 799999999876532    479999


Q ss_pred             EEcCCCCCCcccc
Q psy15742        260 FLSPPWGGPEYAR  272 (342)
Q Consensus       260 i~nPP~~~~~~~~  272 (342)
                      ++|||+++.....
T Consensus       171 L~DaPCSg~G~~~  183 (293)
T d2b9ea1         171 LLDPSCSGSGMPS  183 (293)
T ss_dssp             EECCCCCC-----
T ss_pred             eecCcccchhhhc
Confidence            9999999875444

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2.9e-09  Score=102.77  Aligned_cols=95  Identities=22%  Similarity=0.314  Sum_probs=71.2

Q ss_pred             CHHHHHHHHHHhcC--CCCeEEeccCCCcHHHHHHHHh----C----------------CEEEEEeCCHHHHHHHHHHHH
Q psy15742        175 TPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV----C----------------QKVISIDIDPAKLRLAQHNAS  232 (342)
Q Consensus       175 ~~e~~~~~i~~~~~--~~~~vLDlgcGtG~~~~~~a~~----~----------------~~v~gvD~s~~~l~~a~~n~~  232 (342)
                      ||..+++.+...+.  ++.+|+|++||+|++.+.+.+.    .                ..++|+|+++.+...|+.|+-
T Consensus       148 TP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~  227 (524)
T d2ar0a1         148 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  227 (524)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             cccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence            66677777777654  4779999999999999988663    1                258999999999999999999


Q ss_pred             HcCCCCc----EEEEEccccccC--CCCCccEEEEcCCCCCCc
Q psy15742        233 VYGVSHK----IQFIQGDFFALA--PSLQGDVVFLSPPWGGPE  269 (342)
Q Consensus       233 ~~gl~~~----i~~~~~D~~~~~--~~~~~D~Ii~nPP~~~~~  269 (342)
                      .+|...+    ..+..+|.....  ...+||+|++||||+...
T Consensus       228 l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~  270 (524)
T d2ar0a1         228 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAA  270 (524)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCS
T ss_pred             hhcccccccccchhhhhhhhhhcccccccceeEEecCCccccc
Confidence            8887422    234444544321  335799999999998653

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=1.2e-09  Score=92.36  Aligned_cols=69  Identities=10%  Similarity=0.051  Sum_probs=56.4

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEEcCCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG  266 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~nPP~~  266 (342)
                      .++.+|||+|||+|.++..++    +++|+|+|+.+++.|+++        +++++++|+.+++ ++++||+|++.--.+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  102 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTIC  102 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEECCCCcccccccc----eEEEEeCChhhccccccc--------ccccccccccccccccccccccccccccc
Confidence            345689999999999887764    579999999999999874        5789999999886 557899999965544


Q ss_pred             CC
Q psy15742        267 GP  268 (342)
Q Consensus       267 ~~  268 (342)
                      ..
T Consensus       103 h~  104 (208)
T d1vlma_         103 FV  104 (208)
T ss_dssp             GS
T ss_pred             cc
Confidence            43

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.86  E-value=3.2e-09  Score=91.94  Aligned_cols=79  Identities=19%  Similarity=0.272  Sum_probs=67.2

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC--------CCcEEEEEccccccCC--CCCccEE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV--------SHKIQFIQGDFFALAP--SLQGDVV  259 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl--------~~~i~~~~~D~~~~~~--~~~~D~I  259 (342)
                      ..+|||..||.|..+..+|..|.+|+++|.++......+++++....        ..+++++++|..+++.  ...||+|
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI  168 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred             CCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence            34899999999999999999999999999999998888888765432        1379999999998874  3479999


Q ss_pred             EEcCCCCCC
Q psy15742        260 FLSPPWGGP  268 (342)
Q Consensus       260 i~nPP~~~~  268 (342)
                      ++||||...
T Consensus       169 YlDPMFp~~  177 (250)
T d2oyra1         169 YLDPMFPHK  177 (250)
T ss_dssp             EECCCCCCC
T ss_pred             EECCCCccc
Confidence            999999754

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=8.2e-09  Score=86.29  Aligned_cols=78  Identities=15%  Similarity=0.275  Sum_probs=67.4

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------CCCCccE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDV  258 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~~~~~D~  258 (342)
                      ..++..++|++||+|+.+..+++.  ..+|+|+|.|+.|++.|+.+++.++.  ++.++++++.++.      ...++|.
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~--r~~~~~~~f~~~~~~~~~~~~~~vdg   98 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSD--RVSLFKVSYREADFLLKTLGIEKVDG   98 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTT--TEEEEECCGGGHHHHHHHTTCSCEEE
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccc--cccchhHHHhhHHHHHHHcCCCCcce
Confidence            356889999999999999999886  67999999999999999999988763  8999999987652      3468999


Q ss_pred             EEEcCCCC
Q psy15742        259 VFLSPPWG  266 (342)
Q Consensus       259 Ii~nPP~~  266 (342)
                      |+.|..+.
T Consensus        99 Il~DlGvS  106 (192)
T d1m6ya2          99 ILMDLGVS  106 (192)
T ss_dssp             EEEECSCC
T ss_pred             eeeccchh
Confidence            99997764

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.3e-09  Score=89.35  Aligned_cols=85  Identities=14%  Similarity=0.091  Sum_probs=71.3

Q ss_pred             HHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----
Q psy15742        179 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----  251 (342)
Q Consensus       179 ~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----  251 (342)
                      ++..+.+..+ .++|||+|||+|..++++|+.   +.+++++|.+++..+.|++|++..|+.++++++.+|+.+..    
T Consensus        50 lL~~L~~~~~-~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~  128 (219)
T d2avda1          50 LLANLARLIQ-AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELL  128 (219)
T ss_dssp             HHHHHHHHTT-CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHccC-CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhh
Confidence            3344444444 569999999999999999985   57999999999999999999999999889999999987754    


Q ss_pred             ---CCCCccEEEEcCC
Q psy15742        252 ---PSLQGDVVFLSPP  264 (342)
Q Consensus       252 ---~~~~~D~Ii~nPP  264 (342)
                         ...+||+|++|--
T Consensus       129 ~~~~~~~fD~ifiD~d  144 (219)
T d2avda1         129 AAGEAGTFDVAVVDAD  144 (219)
T ss_dssp             HTTCTTCEEEEEECSC
T ss_pred             hhcccCCccEEEEeCC
Confidence               2458999999854

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.81  E-value=1.8e-08  Score=88.18  Aligned_cols=78  Identities=24%  Similarity=0.284  Sum_probs=67.1

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW  265 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~  265 (342)
                      .+..+|||+|||+|.++..+++.  ..+++++|+ +++++.|++++...|+.+++.++.+|+++..+. .||+|++.--.
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~-~~D~v~~~~vL  157 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPV-TADVVLLSFVL  157 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC-CEEEEEEESCG
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccc-cchhhhccccc
Confidence            34679999999999999999997  679999998 789999999999999988999999999875543 59999986554


Q ss_pred             CC
Q psy15742        266 GG  267 (342)
Q Consensus       266 ~~  267 (342)
                      +.
T Consensus       158 h~  159 (256)
T d1qzza2         158 LN  159 (256)
T ss_dssp             GG
T ss_pred             cc
Confidence            43

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.74  E-value=1.1e-08  Score=87.72  Aligned_cols=84  Identities=18%  Similarity=0.209  Sum_probs=71.3

Q ss_pred             HHHHHHHhcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC---
Q psy15742        179 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---  252 (342)
Q Consensus       179 ~~~~i~~~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~---  252 (342)
                      ++..+.+..+ .++||++|+++|..++.+|+.   +.+++++|.++...+.|++|++..|+.++++++.+|+.+.++   
T Consensus        50 ~L~~L~~~~~-~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~  128 (227)
T d1susa1          50 FLSMLLKLIN-AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI  128 (227)
T ss_dssp             HHHHHHHHHT-CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHhcC-CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHH
Confidence            4444444444 559999999999999999975   679999999999999999999999998899999999987642   


Q ss_pred             -----CCCccEEEEcC
Q psy15742        253 -----SLQGDVVFLSP  263 (342)
Q Consensus       253 -----~~~~D~Ii~nP  263 (342)
                           .++||+||+|-
T Consensus       129 ~~~~~~~~fD~iFiDa  144 (227)
T d1susa1         129 KDEKNHGSYDFIFVDA  144 (227)
T ss_dssp             HCGGGTTCBSEEEECS
T ss_pred             hccccCCceeEEEecc
Confidence                 34799999984

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.68  E-value=4.3e-08  Score=88.13  Aligned_cols=86  Identities=22%  Similarity=0.322  Sum_probs=73.6

Q ss_pred             hcCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-CCCCccEEEE
Q psy15742        186 RCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFL  261 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~D~Ii~  261 (342)
                      ..++|.+|||++||.|+=+..++..   ...++++|.++..+...+.|+++.|+. ++.+...|..... ....||.|++
T Consensus       113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~~~~~~~~~~fD~ILv  191 (313)
T d1ixka_         113 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDKILL  191 (313)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-ccccccccccccccccccccEEEE
Confidence            3567999999999999999888865   467999999999999999999999984 7888888887764 3458999999


Q ss_pred             cCCCCCCcccc
Q psy15742        262 SPPWGGPEYAR  272 (342)
Q Consensus       262 nPP~~~~~~~~  272 (342)
                      |||+.+..-..
T Consensus       192 DaPCSg~G~~~  202 (313)
T d1ixka_         192 DAPCTGSGTIH  202 (313)
T ss_dssp             ECCTTSTTTCC
T ss_pred             ccccccCCcee
Confidence            99999976544

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=1.8e-08  Score=93.34  Aligned_cols=76  Identities=18%  Similarity=0.190  Sum_probs=56.0

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHHHHcC-------CC-CcEEE-EEccccccC----
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-C-QKVISIDIDPAKLRLAQHNASVYG-------VS-HKIQF-IQGDFFALA----  251 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~-~~v~gvD~s~~~l~~a~~n~~~~g-------l~-~~i~~-~~~D~~~~~----  251 (342)
                      +++|++|||+|||+|.+++.+|.. + .+|+|||+|+.+++.|+++++..+       .. ....+ ..++..+..    
T Consensus       214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~  293 (406)
T d1u2za_         214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE  293 (406)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred             CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccc
Confidence            568999999999999999999986 4 589999999999999999987642       11 23333 344444321    


Q ss_pred             CCCCccEEEEc
Q psy15742        252 PSLQGDVVFLS  262 (342)
Q Consensus       252 ~~~~~D~Ii~n  262 (342)
                      .-..+|+|++|
T Consensus       294 ~~~~adVV~in  304 (406)
T d1u2za_         294 LIPQCDVILVN  304 (406)
T ss_dssp             HGGGCSEEEEC
T ss_pred             ccccceEEEEe
Confidence            11257888886

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.68  E-value=3.1e-08  Score=91.10  Aligned_cols=78  Identities=23%  Similarity=0.273  Sum_probs=64.8

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCC--------------cEEEEEccccccC--
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSH--------------KIQFIQGDFFALA--  251 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~--------------~i~~~~~D~~~~~--  251 (342)
                      +.+|||.+||||..++.+|..  +.+|+++|+|+.+++++++|++.|++.+              .+.+.+.|+...+  
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~  125 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  125 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence            679999999999999988774  5689999999999999999999998632              3667778876655  


Q ss_pred             CCCCccEEEEcCCCCCC
Q psy15742        252 PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       252 ~~~~~D~Ii~nPP~~~~  268 (342)
                      ....||+|.+|| |+..
T Consensus       126 ~~~~fDvIDiDP-fGs~  141 (375)
T d2dula1         126 RHRYFHFIDLDP-FGSP  141 (375)
T ss_dssp             STTCEEEEEECC-SSCC
T ss_pred             hcCcCCcccCCC-CCCc
Confidence            345799999997 6654

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=3.5e-08  Score=87.54  Aligned_cols=91  Identities=20%  Similarity=0.244  Sum_probs=72.8

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc--CCCCCccEEEEc
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL--APSLQGDVVFLS  262 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~--~~~~~~D~Ii~n  262 (342)
                      .++|.+|||+++|.|+=+..++..  ...|+++|+++..++..+.|+++.|+. ++.....|....  .....||.|++|
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~~~~~~fd~IL~D  178 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQFDRILLD  178 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchhcccccccEEEEe
Confidence            456889999999999999999876  468999999999999999999999984 555555554322  245689999999


Q ss_pred             CCCCCCcccccccccc
Q psy15742        263 PPWGGPEYARSSFSID  278 (342)
Q Consensus       263 PP~~~~~~~~~~~~~~  278 (342)
                      ||+++.....+..++.
T Consensus       179 aPCSg~G~~rr~p~~~  194 (284)
T d1sqga2         179 APCSATGVIRRHPDIK  194 (284)
T ss_dssp             CCCCCGGGTTTCTTHH
T ss_pred             ccccccCccccccchh
Confidence            9999987665555544

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=9.3e-09  Score=89.57  Aligned_cols=79  Identities=15%  Similarity=0.093  Sum_probs=65.1

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC------CCccEEEE
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS------LQGDVVFL  261 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~------~~~D~Ii~  261 (342)
                      .+++.|||+|||+|.++..+++.+.+|+++|+|+.+++..+.+...   .++++++.+|+.++...      +.--.|+.
T Consensus        20 ~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~l~~~~~~~~~~~~~~~~vvg   96 (252)
T d1qyra_          20 QKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMTFNFGELAEKMGQPLRVFG   96 (252)
T ss_dssp             CTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGGCCHHHHHHHHTSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhh---ccchhHHhhhhhhhcccccccccCCCeEEEe
Confidence            4688999999999999999999999999999999999998874432   24899999999986421      12347899


Q ss_pred             cCCCCCCc
Q psy15742        262 SPPWGGPE  269 (342)
Q Consensus       262 nPP~~~~~  269 (342)
                      |.||...+
T Consensus        97 NlPY~Iss  104 (252)
T d1qyra_          97 NLPYNIST  104 (252)
T ss_dssp             ECCTTTHH
T ss_pred             cchHHHHH
Confidence            99998764

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.59  E-value=8.6e-08  Score=85.96  Aligned_cols=109  Identities=17%  Similarity=0.138  Sum_probs=79.4

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc--CC--CCcEEEEEccccccC--CCCCccE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY--GV--SHKIQFIQGDFFALA--PSLQGDV  258 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~--gl--~~~i~~~~~D~~~~~--~~~~~D~  258 (342)
                      .+..++||.+|.|.|+.+.++++.  ..+|++||+++..+++|++.+...  +.  +++++++.+|+.+++  ...+||+
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            455779999999999999999876  569999999999999999987542  21  358999999999886  3458999


Q ss_pred             EEEcCC--CCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        259 VFLSPP--WGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       259 Ii~nPP--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      |++|++  ++.....      ..+.    ....+..+.+.+.+++++.+
T Consensus       155 Ii~D~~dp~~~~~~~------~~L~----t~eF~~~~~~~L~p~Gvlv~  193 (312)
T d1uira_         155 VIIDLTDPVGEDNPA------RLLY----TVEFYRLVKAHLNPGGVMGM  193 (312)
T ss_dssp             EEEECCCCBSTTCGG------GGGS----SHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEeCCCcccccchh------hhhh----hHHHHHHHHHhcCCCceEEE
Confidence            999874  3322111      1111    11244556677788877765

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1e-08  Score=89.22  Aligned_cols=50  Identities=14%  Similarity=-0.090  Sum_probs=42.6

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGV  236 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl  236 (342)
                      ..+|.+|||+|||+|..++.++.. +.+|+|+|+|+.+++.|++++...+.
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~   99 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPG   99 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTT
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccc
Confidence            345779999999999998888766 55799999999999999999876654

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.7e-07  Score=82.49  Aligned_cols=79  Identities=6%  Similarity=-0.011  Sum_probs=56.3

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEE--EEEcccccc-------CC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--------CQKVISIDIDPAKLRLAQHNASVYGVSHKIQ--FIQGDFFAL-------AP  252 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--------~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~--~~~~D~~~~-------~~  252 (342)
                      ..+|||+|||+|.++..++..        +..++|+|+|+.|++.|+++++......++.  +...++.++       .+
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence            347999999999998887653        2468999999999999999987543323444  445554332       24


Q ss_pred             CCCccEEEEcCCCCCC
Q psy15742        253 SLQGDVVFLSPPWGGP  268 (342)
Q Consensus       253 ~~~~D~Ii~nPP~~~~  268 (342)
                      +.+||+|++.--++..
T Consensus       121 ~~~fD~I~~~~~l~~~  136 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYV  136 (280)
T ss_dssp             CCCEEEEEEESCGGGC
T ss_pred             CCceeEEEEccceecC
Confidence            5689999995554443

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.48  E-value=2.6e-07  Score=81.40  Aligned_cols=108  Identities=18%  Similarity=0.131  Sum_probs=79.3

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHc---------CCCCcEEEEEccccccC-CCCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVY---------GVSHKIQFIQGDFFALA-PSLQ  255 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~---------gl~~~i~~~~~D~~~~~-~~~~  255 (342)
                      .++..+||-+|+|.|+.+..+.+. ..+|+.||+|+..++.|++-....         ..+++++++.+|+.++. ...+
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            455789999999999999988876 568999999999999999866432         22468999999998876 3458


Q ss_pred             ccEEEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        256 GDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       256 ~D~Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      ||+|++|++-.. +...      .+.    ....+..+.+.+.+++++.+
T Consensus       150 yDvIi~D~~~~~-~~~~------~L~----t~eF~~~~~~~L~~~Gv~v~  188 (276)
T d1mjfa_         150 FDVIIADSTDPV-GPAK------VLF----SEEFYRYVYDALNNPGIYVT  188 (276)
T ss_dssp             EEEEEEECCCCC------------TT----SHHHHHHHHHHEEEEEEEEE
T ss_pred             CCEEEEeCCCCC-CCcc------ccc----CHHHHHhhHhhcCCCceEEE
Confidence            999999987432 1111      111    12255567778888888876

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.42  E-value=3.9e-07  Score=80.78  Aligned_cols=109  Identities=10%  Similarity=0.035  Sum_probs=79.0

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccccC--CCCCccEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALA--PSLQGDVV  259 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~g--l-~~~i~~~~~D~~~~~--~~~~~D~I  259 (342)
                      .+..++||-+|.|.|+.+.++++.  ..+|++||+|+..++.|++.+..+.  + +++++++.+|+.+++  ...+||+|
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  166 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  166 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence            455789999999999999999886  5789999999999999999775432  2 358999999999887  34589999


Q ss_pred             EEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        260 FLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       260 i~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      ++|++-......      ..+.    ....+..+.+.+.+++++..
T Consensus       167 i~D~~dp~~~~~------~~L~----t~efy~~~~~~L~~~Gi~v~  202 (295)
T d1inla_         167 IIDSTDPTAGQG------GHLF----TEEFYQACYDALKEDGVFSA  202 (295)
T ss_dssp             EEEC----------------CC----SHHHHHHHHHHEEEEEEEEE
T ss_pred             EEcCCCCCcCch------hhhc----cHHHHHHHHhhcCCCcEEEE
Confidence            999763211100      1111    12255567778888888876

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.36  E-value=1e-06  Score=77.27  Aligned_cols=109  Identities=17%  Similarity=0.130  Sum_probs=81.4

Q ss_pred             hcCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc-C-C-CCcEEEEEccccccC--CCCCccE
Q psy15742        186 RCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY-G-V-SHKIQFIQGDFFALA--PSLQGDV  258 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~-g-l-~~~i~~~~~D~~~~~--~~~~~D~  258 (342)
                      ..+...+||-+|.|.|+.+.++.+.  ..+|+.||+|+..++.|++....+ + . +++++++.+|+..++  ...+||+
T Consensus        72 ~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDv  151 (274)
T d1iy9a_          72 THPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV  151 (274)
T ss_dssp             HSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred             ccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCE
Confidence            3455789999999999999999986  579999999999999999987543 2 2 358999999999876  3458999


Q ss_pred             EEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        259 VFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       259 Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      |++|++-... ..      ..+.    .......+.+.+.+++++..
T Consensus       152 Ii~D~~~p~~-~~------~~L~----t~eFy~~~~~~L~~~Gv~v~  187 (274)
T d1iy9a_         152 IMVDSTEPVG-PA------VNLF----TKGFYAGIAKALKEDGIFVA  187 (274)
T ss_dssp             EEESCSSCCS-CC------CCCS----TTHHHHHHHHHEEEEEEEEE
T ss_pred             EEEcCCCCCC-cc------hhhc----cHHHHHHHHhhcCCCceEEE
Confidence            9999873221 10      1111    12245557778888888876

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=7.4e-07  Score=77.80  Aligned_cols=46  Identities=11%  Similarity=-0.074  Sum_probs=38.9

Q ss_pred             CCCeEEeccCCCcHHHHHHH-HhCCEEEEEeCCHHHHHHHHHHHHHc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVY  234 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a-~~~~~v~gvD~s~~~l~~a~~n~~~~  234 (342)
                      .|.++||+|||+|..++..+ +.+.+|+|+|.|+.|++.++++++..
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~  100 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEE  100 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTC
T ss_pred             CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcC
Confidence            47899999999998875544 45789999999999999999887643

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.21  E-value=8.8e-06  Score=71.75  Aligned_cols=108  Identities=17%  Similarity=0.102  Sum_probs=79.8

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEccccccC---CCCCccE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG---VSHKIQFIQGDFFALA---PSLQGDV  258 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~g---l~~~i~~~~~D~~~~~---~~~~~D~  258 (342)
                      .+..++||=+|.|.|+.+.++.+.  ..+++.||+|+..++.|++....+.   -+++++++.+|+.++.   ...+||+
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv  157 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  157 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence            355679999999999999999887  3689999999999999999764322   1368999999998876   2358999


Q ss_pred             EEEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        259 VFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       259 Ii~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      |++|.+-.. ...      ..+.    ....+..+.+.+.+++++..
T Consensus       158 Ii~D~~dp~-~~~------~~L~----t~eF~~~~~~~L~~~Gi~v~  193 (290)
T d1xj5a_         158 VIVDSSDPI-GPA------KELF----EKPFFQSVARALRPGGVVCT  193 (290)
T ss_dssp             EEECCCCTT-SGG------GGGG----SHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEcCCCCC-Ccc------hhhC----CHHHHHHHHHhcCCCcEEEE
Confidence            999977221 111      1111    12245566778888888877

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.18  E-value=2.4e-06  Score=75.94  Aligned_cols=108  Identities=16%  Similarity=0.086  Sum_probs=78.4

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccccC--CCCCccEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALA--PSLQGDVV  259 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~g--l-~~~i~~~~~D~~~~~--~~~~~D~I  259 (342)
                      .+..++||-+|.|.|+.+.++.+.  ..+|+.||+|+..++.|++.+..+.  + +++++++.+|+.++.  ...+||+|
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            455779999999999999999986  3799999999999999999875432  1 358999999999886  45589999


Q ss_pred             EEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        260 FLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       260 i~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      ++|++-.. ..      ...+.    ....+..+.+.+.++++++.
T Consensus       184 I~D~~dp~-~~------~~~L~----t~eFy~~~~~~L~~~Gi~v~  218 (312)
T d2b2ca1         184 ITDSSDPV-GP------AESLF----GQSYYELLRDALKEDGILSS  218 (312)
T ss_dssp             EECCC------------------------HHHHHHHHEEEEEEEEE
T ss_pred             EEcCCCCC-Cc------chhhh----hHHHHHHHHhhcCCCcEEEE
Confidence            99977321 11      11111    11245566777888888877

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=2.4e-06  Score=75.25  Aligned_cols=108  Identities=14%  Similarity=0.084  Sum_probs=78.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccccC--CCCCccEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALA--PSLQGDVV  259 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~g--l-~~~i~~~~~D~~~~~--~~~~~D~I  259 (342)
                      .+..++||-+|.|.|+.+..+.+.  ..+|+.+|+++..++.|++-+..+.  . +++++++.+|+.+++  ...+||+|
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            455789999999999999999986  6799999999999999998775421  2 359999999999886  34589999


Q ss_pred             EEcCCCCCCccccccccccccCcCCCCchhhhHhhhccCCCceeec
Q psy15742        260 FLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL  305 (342)
Q Consensus       260 i~nPP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      ++|++-. ...      ...+.    ....+..+.+.+.+++++..
T Consensus       156 i~D~~~p-~~~------~~~L~----t~eF~~~~~~~L~~~Gi~v~  190 (285)
T d2o07a1         156 ITDSSDP-MGP------AESLF----KESYYQLMKTALKEDGVLCC  190 (285)
T ss_dssp             EEECC----------------------CHHHHHHHHHEEEEEEEEE
T ss_pred             EEcCCCC-CCc------ccccc----cHHHHHHHHHhcCCCCeEEE
Confidence            9997621 110      11111    12245556677888888776

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=6.3e-06  Score=69.02  Aligned_cols=71  Identities=17%  Similarity=0.104  Sum_probs=64.6

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  261 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~  261 (342)
                      +.+++|+|+|.|.-++.+|-.  ..+++.+|.+..-+...++-.+..|+ ++++++++.+.+.....+||+|++
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~~~~fD~V~s  138 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-ENIEPVQSRVEEFPSEPPFDGVIS  138 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEECCTTTSCCCSCEEEEEC
T ss_pred             CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-cceeeeccchhhhccccccceehh
Confidence            568999999999999999875  68999999999999999999999999 489999999999877778999988

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.08  E-value=7.5e-06  Score=67.15  Aligned_cols=75  Identities=20%  Similarity=0.233  Sum_probs=62.3

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------CCCCccEEE
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDVVF  260 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~~~~~D~Ii  260 (342)
                      .++|..++|.++|.|+.+..+.+...+|+|+|.++.++..|+..     ..+++.++++++.++.      ....+|.|+
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl   90 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAALGVERVDGIL   90 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHcCCCccCEEE
Confidence            45788999999999999999998888999999999999988763     1258999999887653      335799999


Q ss_pred             EcCCCC
Q psy15742        261 LSPPWG  266 (342)
Q Consensus       261 ~nPP~~  266 (342)
                      .|--+.
T Consensus        91 ~DLGvS   96 (182)
T d1wg8a2          91 ADLGVS   96 (182)
T ss_dssp             EECSCC
T ss_pred             EEccCC
Confidence            997544

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=98.00  E-value=7.7e-06  Score=70.16  Aligned_cols=57  Identities=21%  Similarity=0.379  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHh-cCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH
Q psy15742        176 PEKVAQHIASR-CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS  232 (342)
Q Consensus       176 ~e~~~~~i~~~-~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~  232 (342)
                      |..+++.+... .++|+.|||++||+|+.++++.+.+.+.+|+|+++++++.|++++.
T Consensus       198 P~~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         198 PRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            45666665554 4789999999999999999999889999999999999999999875

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.87  E-value=1.3e-05  Score=70.87  Aligned_cols=61  Identities=18%  Similarity=0.248  Sum_probs=51.7

Q ss_pred             CHHHHHHHHHH-hcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcC
Q psy15742        175 TPEKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYG  235 (342)
Q Consensus       175 ~~e~~~~~i~~-~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~g  235 (342)
                      -|..+++.+.. ..++|+.|||++||+|+.++++.+.|.+.+|+|+++++++.|++++..+.
T Consensus       235 kP~~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         235 FPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             CCTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             CchHHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHhcc
Confidence            45666666555 45789999999999999999999899999999999999999998876443

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=97.87  E-value=2.8e-05  Score=68.80  Aligned_cols=74  Identities=20%  Similarity=0.304  Sum_probs=60.6

Q ss_pred             eEEeccCCCcHHHHHHHHhCCEEE-EEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC--CCCccEEEEcCCCCCC
Q psy15742        192 VVIDGFCGCGGNTIQFAAVCQKVI-SIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPWGGP  268 (342)
Q Consensus       192 ~vLDlgcGtG~~~~~~a~~~~~v~-gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~--~~~~D~Ii~nPP~~~~  268 (342)
                      +|+|++||.|+++..+-+.|.+++ ++|+++.+.+..+.|.       ...++.+|+.++..  -...|+++..||+.+.
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~-------~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~f   74 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-------SAKLIKGDISKISSDEFPKCDGIIGGPPCQSW   74 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC-------CSEEEESCTTTSCGGGSCCCSEEEECCCCTTT
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-------CCCCccCChhhCCHhHcccccEEeeccccccc
Confidence            699999999999998877776654 9999999999888885       23567899988752  2378999999999987


Q ss_pred             cccc
Q psy15742        269 EYAR  272 (342)
Q Consensus       269 ~~~~  272 (342)
                      +..+
T Consensus        75 S~ag   78 (324)
T d1dcta_          75 SEGG   78 (324)
T ss_dssp             SSSS
T ss_pred             cccc
Confidence            6555

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.86  E-value=1.7e-05  Score=68.77  Aligned_cols=59  Identities=19%  Similarity=0.233  Sum_probs=50.8

Q ss_pred             HHHHHHHHHH-hcCCCCeEEeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc
Q psy15742        176 PEKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY  234 (342)
Q Consensus       176 ~e~~~~~i~~-~~~~~~~vLDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~  234 (342)
                      |..+++.+.. ..++|+.|||++||+|+.++++.+.+.+.+|+|+++.+++.|++++...
T Consensus       193 P~~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         193 PAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            4556665554 4568999999999999999999989999999999999999999999754

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=97.71  E-value=5.6e-05  Score=67.22  Aligned_cols=105  Identities=15%  Similarity=0.132  Sum_probs=72.0

Q ss_pred             CCCeEEeccCCCcHHHHHHHHhCCEE-EEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCC--CCccEEEEcCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAVCQKV-ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSPPW  265 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~~~~v-~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~--~~~D~Ii~nPP~  265 (342)
                      .+.+|+|++||.|+++..+.+.|.++ .++|+++.+++..+.|...        ..++|+.++...  ..+|+++..||+
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~~~~~~Dll~ggpPC   81 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEKTIPDHDILCAGFPC   81 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGGGSCCCSEEEEECCC
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchhhcceeeeeeccccc
Confidence            36799999999999999988777655 6699999999999998731        125788776522  379999999999


Q ss_pred             CCCccccccccccccCcCCCCchhhhHhhhccCCCcee
Q psy15742        266 GGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGY  303 (342)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (342)
                      .+.+..+......+-...  -...+++......|..++
T Consensus        82 q~fS~ag~~~g~~d~r~~--l~~~~~~~i~~~kP~~~~  117 (327)
T d2c7pa1          82 QAFSISGKQKGFEDSRGT--LFFDIARIVREKKPKVVF  117 (327)
T ss_dssp             TTTCTTSCCCGGGSTTSC--HHHHHHHHHHHHCCSEEE
T ss_pred             chhhhhhhhcCCcccchh--HHHHHHHHHhccCCcEEe
Confidence            987665532222111111  122455555566665544

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=0.00025  Score=63.13  Aligned_cols=58  Identities=12%  Similarity=0.162  Sum_probs=49.1

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL  250 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~  250 (342)
                      .+..|||+|.|.|.++..+...  ..+|+++|+|+...+..++...    .++++++++|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchhhc
Confidence            3678999999999999999875  3689999999999999887653    24789999999865

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.00012  Score=65.13  Aligned_cols=77  Identities=19%  Similarity=0.306  Sum_probs=54.8

Q ss_pred             CCeEEeccCCCcHHHHHHHHhCC--E-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----CCCccEEEEc
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAVCQ--K-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFLS  262 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~~~--~-v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----~~~~D~Ii~n  262 (342)
                      ..+|+|+|||.|+++..+...|.  + +.++|+++.+++..+.|..      +..++++|+.+...    ....|+++..
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~~~~~~Dll~gg   75 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMS   75 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHcCCCCccEEEee
Confidence            34799999999999988866664  3 6799999999999888852      45677888887642    2368999999


Q ss_pred             CCCCCCcccc
Q psy15742        263 PPWGGPEYAR  272 (342)
Q Consensus       263 PP~~~~~~~~  272 (342)
                      ||+.+.+..+
T Consensus        76 pPCq~fS~ag   85 (343)
T d1g55a_          76 PPCQPFTRIG   85 (343)
T ss_dssp             CC--------
T ss_pred             cccccccccc
Confidence            9999876544

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.35  E-value=0.0003  Score=59.64  Aligned_cols=72  Identities=11%  Similarity=0.110  Sum_probs=62.7

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC----CCCccEEEE
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFL  261 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~----~~~~D~Ii~  261 (342)
                      .+.+++|+|+|.|.-++.+|-.  ..+++-+|.+..-+...++-.+..|+. ++.++++.+.++..    ..+||+|++
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccccccccceEEEE
Confidence            3678999999999999999864  789999999999999999999999994 89999999887642    247999998

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.27  E-value=0.00034  Score=59.70  Aligned_cols=68  Identities=25%  Similarity=0.296  Sum_probs=52.5

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      ...+|+|+|||+|.+++.+++.  ..+++..|+- ..+       +..+..++++++.+|+++..+  ..|++++.--.+
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi-------~~~~~~~ri~~~~gd~~~~~p--~~D~~~l~~vLh  150 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVI-------ENAPPLSGIEHVGGDMFASVP--QGDAMILKAVCH  150 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHH-------TTCCCCTTEEEEECCTTTCCC--CEEEEEEESSGG
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhh-------hccCCCCCeEEecCCcccccc--cceEEEEehhhh
Confidence            4579999999999999999987  7889999984 333       334445799999999987655  459998854443

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.25  E-value=0.00036  Score=59.48  Aligned_cols=68  Identities=21%  Similarity=0.282  Sum_probs=52.8

Q ss_pred             CCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        189 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       189 ~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      ...+|+|+|||+|..++.+++.  ..+++..|+. ..+       +..+..++++++.+|+++..+  .+|++++.=-.+
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi-------~~~~~~~rv~~~~gD~f~~~p--~aD~~~l~~vLH  149 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVV-------ENLSGSNNLTYVGGDMFTSIP--NADAVLLKYILH  149 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHH-------TTCCCBTTEEEEECCTTTCCC--CCSEEEEESCGG
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHH-------HhCcccCceEEEecCcccCCC--CCcEEEEEeecc
Confidence            3468999999999999999987  6899999984 333       334555799999999987544  579999853333

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.00032  Score=56.96  Aligned_cols=66  Identities=23%  Similarity=0.236  Sum_probs=52.1

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC---------CCC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------PSL  254 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~---~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~---------~~~  254 (342)
                      ++++.+|+|+||+.|+++..+++.   ...++|+|+.+-           ..+ +++.++++|+.+..         ...
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i-~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI-VGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC-TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc-CCceEeecccccchhhhhhhhhccCc
Confidence            467899999999999999998875   478999998651           123 47899999987642         345


Q ss_pred             CccEEEEcCC
Q psy15742        255 QGDVVFLSPP  264 (342)
Q Consensus       255 ~~D~Ii~nPP  264 (342)
                      ++|+|++|-.
T Consensus        88 ~~DlVlSD~a   97 (180)
T d1ej0a_          88 KVQVVMSDMA   97 (180)
T ss_dssp             CEEEEEECCC
T ss_pred             ceeEEEeccc
Confidence            8999999944

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.84  E-value=0.00035  Score=59.10  Aligned_cols=69  Identities=20%  Similarity=0.289  Sum_probs=49.5

Q ss_pred             CCeEEeccCCCcHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDV  258 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~------~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~  258 (342)
                      +++||++|++.|+.++.++..      ..+++|+|+++.....+..      ..++++++.+|..+..     ....+|+
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs~~~~~~~~l~~~~~dl  154 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLREMAHPL  154 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeecccccHHHHHHHHhcCCCE
Confidence            458999999999988877642      4689999998754332211      1258999999976532     3446899


Q ss_pred             EEEcCC
Q psy15742        259 VFLSPP  264 (342)
Q Consensus       259 Ii~nPP  264 (342)
                      |++|--
T Consensus       155 IfID~~  160 (232)
T d2bm8a1         155 IFIDNA  160 (232)
T ss_dssp             EEEESS
T ss_pred             EEEcCC
Confidence            999854

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.81  E-value=0.0051  Score=50.03  Aligned_cols=40  Identities=25%  Similarity=0.214  Sum_probs=31.0

Q ss_pred             CCeEEeccCCCcHHHHHHH----Hh------CCEEEEEeCCHHHHHHHHH
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AV------CQKVISIDIDPAKLRLAQH  229 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~------~~~v~gvD~s~~~l~~a~~  229 (342)
                      .-+|+++|||||--...+|    ..      ..+++|+|+|+.+++.|+.
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            4589999999998544333    22      1379999999999999984

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.51  E-value=0.0023  Score=54.16  Aligned_cols=62  Identities=21%  Similarity=0.298  Sum_probs=47.5

Q ss_pred             CCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEE
Q psy15742        190 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL  261 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~  261 (342)
                      ..+|+|+|||+|..++.+++.  ..+++++|+.+. +       +.....++++++.+|+++..|.  .|++++
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-------~~~~~~~r~~~~~~d~~~~~P~--ad~~~l  145 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-------EDAPSYPGVEHVGGDMFVSIPK--ADAVFM  145 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-------TTCCCCTTEEEEECCTTTCCCC--CSCEEC
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-------hhcccCCceEEecccccccCCC--cceEEE
Confidence            468999999999999999997  789999998653 2       2333446899999999876553  455554

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.18  E-value=0.00063  Score=57.51  Aligned_cols=75  Identities=17%  Similarity=0.225  Sum_probs=46.2

Q ss_pred             cCCCCeEEeccCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcC
Q psy15742        187 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP  263 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nP  263 (342)
                      ++++.+|+|+|||.|+.+..++..  ...|.|+++--..-+ .-.....++. +-+++...+-....+....|+|+||-
T Consensus        64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-~P~~~~~~~~-ni~~~~~~~dv~~l~~~~~D~vlcDm  140 (257)
T d2p41a1          64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-EPIPMSTYGW-NLVRLQSGVDVFFIPPERCDTLLCDI  140 (257)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCSTTG-GGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-CCcccccccc-ccccchhhhhHHhcCCCcCCEEEeeC
Confidence            456779999999999999999876  357788887321000 0000011111 23455555444444566899999994

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.08  Score=44.52  Aligned_cols=79  Identities=9%  Similarity=-0.006  Sum_probs=59.6

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~  255 (342)
                      ++.+|=.|++.|.   ++..+++.|.+|+.++.+++.++.+.+.++..+...++.++.+|+.+..           ..+.
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g~   89 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSG   89 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            6677777776554   3334455599999999999999999888888776568889999998642           1257


Q ss_pred             ccEEEEcCCCCCC
Q psy15742        256 GDVVFLSPPWGGP  268 (342)
Q Consensus       256 ~D~Ii~nPP~~~~  268 (342)
                      .|++|.|..+...
T Consensus        90 iD~lVnnAg~~~~  102 (257)
T d1xg5a_          90 VDICINNAGLARP  102 (257)
T ss_dssp             CSEEEECCCCCCC
T ss_pred             CCEEEecccccCC
Confidence            9999998766543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.99  E-value=0.022  Score=44.75  Aligned_cols=69  Identities=14%  Similarity=0.022  Sum_probs=47.8

Q ss_pred             hcCCCCeEEeccCC-CcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccccC--CCCCccEEE
Q psy15742        186 RCKASDVVIDGFCG-CGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ-GDFFALA--PSLQGDVVF  260 (342)
Q Consensus       186 ~~~~~~~vLDlgcG-tG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~-~D~~~~~--~~~~~D~Ii  260 (342)
                      .+++|++|+-+|+| .|.+++.+|+. |.+|+++|.+++.++.|++    .|.+   .++. .+-.++.  ....+|+|+
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~----lGa~---~~i~~~~~~~~~~~~~~~~d~vi   96 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKYFDTFDLIV   96 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc----cCCc---EEeeccchHHHHHhhhcccceEE
Confidence            45789999999998 67777777776 8999999999999988775    3542   2222 1111111  234689887


Q ss_pred             E
Q psy15742        261 L  261 (342)
Q Consensus       261 ~  261 (342)
                      .
T Consensus        97 ~   97 (168)
T d1piwa2          97 V   97 (168)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.98  E-value=0.063  Score=40.17  Aligned_cols=58  Identities=21%  Similarity=0.244  Sum_probs=43.4

Q ss_pred             CCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEEc
Q psy15742        198 CGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLS  262 (342)
Q Consensus       198 cGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~n  262 (342)
                      ||.|.++..+++.    |..|+.+|.|++.++.++...       .+.++.||+.+..     .-..+|.+++-
T Consensus         6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcChhhhhhhccc
Confidence            5668888887753    899999999999988776542       3578999987652     23468888873

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.67  E-value=0.053  Score=42.33  Aligned_cols=45  Identities=18%  Similarity=0.147  Sum_probs=36.9

Q ss_pred             hcCCCCeEEeccCC-CcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHH
Q psy15742        186 RCKASDVVIDGFCG-CGGNTIQFAAV-CQKVISIDIDPAKLRLAQHN  230 (342)
Q Consensus       186 ~~~~~~~vLDlgcG-tG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n  230 (342)
                      .+++|++|+-+||| .|.+++.+++. |.+|+++|.++..++.|++.
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc
Confidence            35678999999988 56667777776 88999999999999888763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.22  E-value=0.066  Score=43.14  Aligned_cols=45  Identities=24%  Similarity=0.214  Sum_probs=36.3

Q ss_pred             hcCCCCeEEeccCCC-cHHHHHHHHh--CCEEEEEeCCHHHHHHHHHH
Q psy15742        186 RCKASDVVIDGFCGC-GGNTIQFAAV--CQKVISIDIDPAKLRLAQHN  230 (342)
Q Consensus       186 ~~~~~~~vLDlgcGt-G~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n  230 (342)
                      .+++|++|+-+|||. |..+..+|+.  +.+|+++|.++..++.|++.
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            457899999999997 5566666764  56999999999999888754

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.83  E-value=0.015  Score=49.26  Aligned_cols=29  Identities=14%  Similarity=0.253  Sum_probs=24.4

Q ss_pred             cEEEEEccccccC---CCCCccEEEEcCCCCC
Q psy15742        239 KIQFIQGDFFALA---PSLQGDVVFLSPPWGG  267 (342)
Q Consensus       239 ~i~~~~~D~~~~~---~~~~~D~Ii~nPP~~~  267 (342)
                      +.-++.+|+++.+   +++++|+|++||||..
T Consensus         4 ~~~~~~~D~le~l~~l~d~SIDliitDPPYn~   35 (279)
T d1eg2a_           4 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNI   35 (279)
T ss_dssp             EEEEEECCHHHHHHTSCTTCEEEEEECCCSBC
T ss_pred             cceEEechHHHHHhhCcCCCccEEEECCCCCC
Confidence            4568899999864   6789999999999974

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.27  Score=40.79  Aligned_cols=77  Identities=16%  Similarity=0.099  Sum_probs=58.6

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~  255 (342)
                      |+.+|=-|++.|.   ++..+++.|.+|+.+|.+++.++.....+...|-  ++.++.+|+.+..           ..+.
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dvs~~~~v~~~~~~i~~~~g~   84 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA--KVHTFVVDCSNREDIYSSAKKVKAEIGD   84 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            6667766766664   4555566699999999999999999998887664  7899999998752           2357


Q ss_pred             ccEEEEcCCCCCC
Q psy15742        256 GDVVFLSPPWGGP  268 (342)
Q Consensus       256 ~D~Ii~nPP~~~~  268 (342)
                      .|+++.|--....
T Consensus        85 idilinnag~~~~   97 (244)
T d1yb1a_          85 VSILVNNAGVVYT   97 (244)
T ss_dssp             CSEEEECCCCCCC
T ss_pred             CceeEeecccccc
Confidence            8999988665543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=92.62  E-value=0.45  Score=39.63  Aligned_cols=76  Identities=8%  Similarity=-0.072  Sum_probs=57.1

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------------CCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------------~~~  254 (342)
                      |+++|=.|+..|.   ++..+++.|.+|+.++.+++.++.+.+.+...+.  ++.++.+|+.+..            ..+
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            7778877776552   4455566699999999999999999888888775  7888999987642            124


Q ss_pred             CccEEEEcCCCCC
Q psy15742        255 QGDVVFLSPPWGG  267 (342)
Q Consensus       255 ~~D~Ii~nPP~~~  267 (342)
                      ..|+++.|.....
T Consensus        84 ~idilinnag~~~   96 (258)
T d1ae1a_          84 KLNILVNNAGVVI   96 (258)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CcEEEeccccccc
Confidence            6888888766444

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=92.22  E-value=0.15  Score=45.74  Aligned_cols=49  Identities=20%  Similarity=0.209  Sum_probs=42.7

Q ss_pred             CCCCeEEeccCCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCC
Q psy15742        188 KASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGV  236 (342)
Q Consensus       188 ~~~~~vLDlgcGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl  236 (342)
                      +++..++|+||-.|..+..+++.    +.+|+++|.++...+..++|++.++.
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            45779999999999998887653    36899999999999999999998765

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.13  E-value=0.097  Score=41.32  Aligned_cols=43  Identities=28%  Similarity=0.261  Sum_probs=35.2

Q ss_pred             cCCCCeEEeccCC-CcHHHHHHHHh-CC-EEEEEeCCHHHHHHHHH
Q psy15742        187 CKASDVVIDGFCG-CGGNTIQFAAV-CQ-KVISIDIDPAKLRLAQH  229 (342)
Q Consensus       187 ~~~~~~vLDlgcG-tG~~~~~~a~~-~~-~v~gvD~s~~~l~~a~~  229 (342)
                      +++|++||-+||| .|..++.+|+. |. +|+++|.++..++.|++
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~   71 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE   71 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence            4578999999887 36677777776 64 89999999999998865

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.92  E-value=0.35  Score=40.19  Aligned_cols=76  Identities=13%  Similarity=0.049  Sum_probs=56.5

Q ss_pred             CCeEEeccCCCcHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a~----~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      ++.+|=.|+ +++++..+|+    .|.+|+.+|.+++.++.+.+.++..|.  ++.++.+|+.+..           ..+
T Consensus        10 nKvalITGa-s~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~g   86 (251)
T d2c07a1          10 NKVALVTGA-GRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTEHK   86 (251)
T ss_dssp             SCEEEEEST-TSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            555665565 4556555554    489999999999999999888887764  7899999998642           235


Q ss_pred             CccEEEEcCCCCCC
Q psy15742        255 QGDVVFLSPPWGGP  268 (342)
Q Consensus       255 ~~D~Ii~nPP~~~~  268 (342)
                      ..|++|.|......
T Consensus        87 ~iDilvnnag~~~~  100 (251)
T d2c07a1          87 NVDILVNNAGITRD  100 (251)
T ss_dssp             CCCEEEECCCCCCC
T ss_pred             Cceeeeeccccccc
Confidence            89999998765443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.072  Score=41.81  Aligned_cols=69  Identities=14%  Similarity=0.161  Sum_probs=47.1

Q ss_pred             cCCCCeEEeccC--CCcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc---ccccc----CCCCCc
Q psy15742        187 CKASDVVIDGFC--GCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG---DFFAL----APSLQG  256 (342)
Q Consensus       187 ~~~~~~vLDlgc--GtG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~---D~~~~----~~~~~~  256 (342)
                      +++|++||-.|+  |.|..++.+|+. |.+|++++.+++..+.+++    .|.+   .++..   |+.+.    .....+
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~---~vi~~~~~~~~~~i~~~t~~~g~   98 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH---EVFNHREVNYIDKIKKYVGEKGI   98 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEETTSTTHHHHHHHHHCTTCE
T ss_pred             CCCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc---cccccccccHHHHhhhhhccCCc
Confidence            567999999986  477788888886 8999999999987777654    4652   23321   22221    134569


Q ss_pred             cEEEEc
Q psy15742        257 DVVFLS  262 (342)
Q Consensus       257 D~Ii~n  262 (342)
                      |+|+..
T Consensus        99 d~v~d~  104 (174)
T d1yb5a2          99 DIIIEM  104 (174)
T ss_dssp             EEEEES
T ss_pred             eEEeec
Confidence            988863

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=91.50  E-value=0.026  Score=47.10  Aligned_cols=28  Identities=14%  Similarity=0.305  Sum_probs=23.5

Q ss_pred             EEEEccccccC---CCCCccEEEEcCCCCCC
Q psy15742        241 QFIQGDFFALA---PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       241 ~~~~~D~~~~~---~~~~~D~Ii~nPP~~~~  268 (342)
                      +++++|+++.+   +++++|+|++||||...
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~   36 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLS   36 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSC
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCCC
Confidence            58899998864   67899999999999753

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=91.32  E-value=0.47  Score=39.40  Aligned_cols=73  Identities=15%  Similarity=0.046  Sum_probs=53.7

Q ss_pred             CCeEEeccCCCcHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQ----FAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~----~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      |+.+|=-|++ ++++..    +++.|.+|+.+|.+++.++.+.+.++..|.  ++.++.+|+.+..           .-+
T Consensus         2 gKValITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           2 SEVALVTGAT-SGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            4445555544 444444    445599999999999999999888887775  7899999987652           135


Q ss_pred             CccEEEEcCCC
Q psy15742        255 QGDVVFLSPPW  265 (342)
Q Consensus       255 ~~D~Ii~nPP~  265 (342)
                      +.|++|.|--.
T Consensus        79 ~iDilVnnAG~   89 (257)
T d2rhca1          79 PVDVLVNNAGR   89 (257)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEecccc
Confidence            79999988543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=91.15  E-value=0.38  Score=40.13  Aligned_cols=74  Identities=18%  Similarity=0.092  Sum_probs=55.2

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~  255 (342)
                      |+++|=-|++.|.   ++..+++.|.+|+.+|.+++.++.+...+...+...++.++.+|+.+..           .-+.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   83 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGR   83 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            6677777766654   4555666799999999999999888887766554457889999987642           1257


Q ss_pred             ccEEEEcC
Q psy15742        256 GDVVFLSP  263 (342)
Q Consensus       256 ~D~Ii~nP  263 (342)
                      .|++|.|-
T Consensus        84 iDiLVnnA   91 (258)
T d1iy8a_          84 IDGFFNNA   91 (258)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            99999874

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=91.03  E-value=0.48  Score=39.45  Aligned_cols=75  Identities=15%  Similarity=0.118  Sum_probs=55.7

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~  255 (342)
                      |+++|=-|++.|.   .+..+++.|.+|+.+|.+++.++.+.+.++..|.  ++.++.+|+.+..           ..+.
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRDFGK   82 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            6677766655543   3444555699999999999999999988887765  7889999987642           1247


Q ss_pred             ccEEEEcCCCC
Q psy15742        256 GDVVFLSPPWG  266 (342)
Q Consensus       256 ~D~Ii~nPP~~  266 (342)
                      .|++|.|.-+.
T Consensus        83 iDilVnnaG~~   93 (260)
T d1zema1          83 IDFLFNNAGYQ   93 (260)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCeehhhhccc
Confidence            99999886543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.62  E-value=0.44  Score=40.05  Aligned_cols=74  Identities=18%  Similarity=0.115  Sum_probs=56.4

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~-----------~~~  254 (342)
                      |+++|=-|++.|.   .+..+++.|.+|+.+|.+++.++.+.+.+...+.. .++.++.+|+.+..           .-+
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   83 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKFG   83 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            6677777766653   34455556999999999999999999988887754 47899999987642           124


Q ss_pred             CccEEEEcC
Q psy15742        255 QGDVVFLSP  263 (342)
Q Consensus       255 ~~D~Ii~nP  263 (342)
                      ..|+++.|.
T Consensus        84 ~iDilVnnA   92 (274)
T d1xhla_          84 KIDILVNNA   92 (274)
T ss_dssp             CCCEEEECC
T ss_pred             CceEEEeec
Confidence            789999884

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.54  E-value=0.16  Score=39.90  Aligned_cols=44  Identities=18%  Similarity=0.133  Sum_probs=36.3

Q ss_pred             hcCCCCeEEeccCCC-cHHHHHHHHh-C-CEEEEEeCCHHHHHHHHH
Q psy15742        186 RCKASDVVIDGFCGC-GGNTIQFAAV-C-QKVISIDIDPAKLRLAQH  229 (342)
Q Consensus       186 ~~~~~~~vLDlgcGt-G~~~~~~a~~-~-~~v~gvD~s~~~l~~a~~  229 (342)
                      .+++|++|+=+|||. |..++.+|+. | .+|+++|.++..++.|++
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh
Confidence            356788999899985 7788888886 5 479999999999988874

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.42  E-value=0.44  Score=40.01  Aligned_cols=74  Identities=19%  Similarity=0.099  Sum_probs=55.8

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~-----------~~~  254 (342)
                      |+++|=-|++.|.   ++..+++.|.+|+.+|.+++.++.+.+.+...+.. .++.++.+|+.+..           ..+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   84 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQFG   84 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            6677777766552   34455556999999999999999999988877653 46899999987642           124


Q ss_pred             CccEEEEcC
Q psy15742        255 QGDVVFLSP  263 (342)
Q Consensus       255 ~~D~Ii~nP  263 (342)
                      ..|++|.|.
T Consensus        85 ~iDilvnnA   93 (272)
T d1xkqa_          85 KIDVLVNNA   93 (272)
T ss_dssp             CCCEEEECC
T ss_pred             CceEEEeCC
Confidence            789999884

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.37  E-value=0.62  Score=38.64  Aligned_cols=76  Identities=16%  Similarity=0.093  Sum_probs=56.2

Q ss_pred             CCeEEeccCCCcHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~a----~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      |+++|=-| |+++++..+|    +.|.+|+.+|.+++.++.+.+.++..|.  ++.++.+|+.+..           .-+
T Consensus        11 gK~alITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~~~g   87 (255)
T d1fmca_          11 GKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISKLG   87 (255)
T ss_dssp             TCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            66677555 4555555554    4589999999999999999888887764  7889999998642           124


Q ss_pred             CccEEEEcCCCCCC
Q psy15742        255 QGDVVFLSPPWGGP  268 (342)
Q Consensus       255 ~~D~Ii~nPP~~~~  268 (342)
                      ..|+++.|.-....
T Consensus        88 ~iDilvnnAG~~~~  101 (255)
T d1fmca_          88 KVDILVNNAGGGGP  101 (255)
T ss_dssp             SCCEEEECCCCCCC
T ss_pred             CCCEeeeCCcCCCC
Confidence            79999998765443

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=90.29  E-value=0.8  Score=37.99  Aligned_cols=76  Identities=9%  Similarity=-0.068  Sum_probs=55.5

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------C-CC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------P-SL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~-~~  254 (342)
                      |+++|=-|++.|.   ++..+++.|.+|+.+|.+++.++.+.+.+...+.  ++.++.+|+.+..           . ..
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~~~   85 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF--KVEASVCDLSSRSERQELMNTVANHFHG   85 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            7777766665443   3444455689999999999999998888887764  7888999987632           1 23


Q ss_pred             CccEEEEcCCCCC
Q psy15742        255 QGDVVFLSPPWGG  267 (342)
Q Consensus       255 ~~D~Ii~nPP~~~  267 (342)
                      +.|+++.|.-...
T Consensus        86 ~idilvnnAG~~~   98 (259)
T d2ae2a_          86 KLNILVNNAGIVI   98 (259)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CceEEEECCceec
Confidence            6899999865443

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=90.21  E-value=0.065  Score=45.37  Aligned_cols=73  Identities=12%  Similarity=0.219  Sum_probs=59.6

Q ss_pred             EeccCCCcHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-----CCCCCccEEEEcCCCCCC
Q psy15742        194 IDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-----APSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       194 LDlgcGtG~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~-----~~~~~~D~Ii~nPP~~~~  268 (342)
                      +..++|+-.++..+.+..-+.+.+|+.++-.+..++|+..   +.++++.+.|.++.     ++..+=-+|++||||...
T Consensus        87 l~~YPGSP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~---~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPpYE~k  163 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERK  163 (271)
T ss_dssp             CCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCST
T ss_pred             cCcCCCCHHHHHHhCCCCCceEEeecCHHHHHHHHHHhcc---CCCceEEcCchHHHHHhhCCCCCCceEEEecCCcCCH
Confidence            4689999999988888888999999999999888877642   35899999998864     344566799999999876


Q ss_pred             c
Q psy15742        269 E  269 (342)
Q Consensus       269 ~  269 (342)
                      +
T Consensus       164 ~  164 (271)
T d2oo3a1         164 E  164 (271)
T ss_dssp             T
T ss_pred             H
Confidence            4

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.16  E-value=0.25  Score=38.09  Aligned_cols=44  Identities=34%  Similarity=0.401  Sum_probs=34.5

Q ss_pred             hcCCCCeEEeccCC-CcHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q psy15742        186 RCKASDVVIDGFCG-CGGNTIQFAAV-CQKVISIDIDPAKLRLAQH  229 (342)
Q Consensus       186 ~~~~~~~vLDlgcG-tG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~  229 (342)
                      .+++|++|+=+||| .|..++.+++. |.+|+++|.++..++.+++
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~   69 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK   69 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc
Confidence            35678899888887 45556666665 8999999999999988764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=89.90  E-value=0.075  Score=45.49  Aligned_cols=30  Identities=27%  Similarity=0.361  Sum_probs=25.2

Q ss_pred             cEEEEEccccccC---CCCCccEEEEcCCCCCC
Q psy15742        239 KIQFIQGDFFALA---PSLQGDVVFLSPPWGGP  268 (342)
Q Consensus       239 ~i~~~~~D~~~~~---~~~~~D~Ii~nPP~~~~  268 (342)
                      +-++++||+++.+   +++++|+|++||||...
T Consensus        12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~   44 (320)
T d1booa_          12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQ   44 (320)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSS
T ss_pred             CCEEEehhHHHHHhhCccCCCCEEEECCCCcCC
Confidence            4589999998764   67899999999999753

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.35  E-value=0.66  Score=38.60  Aligned_cols=74  Identities=19%  Similarity=0.126  Sum_probs=54.2

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~-~~i~~~~~D~~~~~-----------~~~  254 (342)
                      |+.+|=-|++.|.   .+..+++.|.+|+.+|.+++.++.+.+.+...+.. .++.++.+|+.+..           .-+
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   84 (264)
T d1spxa_           5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFG   84 (264)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            6666666665443   33444556999999999999999999888877653 46899999987642           124


Q ss_pred             CccEEEEcC
Q psy15742        255 QGDVVFLSP  263 (342)
Q Consensus       255 ~~D~Ii~nP  263 (342)
                      ..|++|.|.
T Consensus        85 ~iDilvnnA   93 (264)
T d1spxa_          85 KLDILVNNA   93 (264)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEeeccc
Confidence            789999874

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.33  E-value=0.49  Score=39.24  Aligned_cols=77  Identities=16%  Similarity=-0.017  Sum_probs=54.6

Q ss_pred             CCeEEeccCCCcHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~----a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      |+.+|=-|++.| ++..+    ++.|.+|+.+|.+.+.++.+...+....-..++.++.+|+.+..           ..+
T Consensus         3 GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           3 GKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            667777676554 44444    45599999999999999888777654432347889999998742           124


Q ss_pred             CccEEEEcCCCCC
Q psy15742        255 QGDVVFLSPPWGG  267 (342)
Q Consensus       255 ~~D~Ii~nPP~~~  267 (342)
                      ..|++|.|-....
T Consensus        82 ~iDilVnnAg~~~   94 (254)
T d2gdza1          82 RLDILVNNAGVNN   94 (254)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CcCeecccccccc
Confidence            7999998865443

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=89.00  E-value=0.49  Score=39.56  Aligned_cols=73  Identities=19%  Similarity=0.071  Sum_probs=52.1

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~  255 (342)
                      |+++|=.|++.|.   ++..+++.|.+|+.+|.+++.++.+.+.+...   +.+.++.+|+.+..           ..+.
T Consensus         6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAKHGK   82 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC---CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            6677777766553   23344455999999999999988877776433   36888999987642           1247


Q ss_pred             ccEEEEcCCC
Q psy15742        256 GDVVFLSPPW  265 (342)
Q Consensus       256 ~D~Ii~nPP~  265 (342)
                      .|++|.|--.
T Consensus        83 iD~lVnnAG~   92 (268)
T d2bgka1          83 LDIMFGNVGV   92 (268)
T ss_dssp             CCEEEECCCC
T ss_pred             cceecccccc
Confidence            8999987643

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=88.94  E-value=0.67  Score=32.38  Aligned_cols=68  Identities=13%  Similarity=-0.000  Sum_probs=39.7

Q ss_pred             CCeEEecc-CCCcH--HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCCCCCccEEEEcCCCC
Q psy15742        190 SDVVIDGF-CGCGG--NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       190 ~~~vLDlg-cGtG~--~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      ..++.=+| ||+|.  ++..+...|..|+|.|......   .+.+...|.    .+..+...+..  ...|+|+..|...
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~---~~~L~~~Gi----~v~~g~~~~~i--~~~d~vV~S~AI~   78 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVV---TQRLAQAGA----KIYIGHAEEHI--EGASVVVVSSAIK   78 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHH---HHHHHHTTC----EEEESCCGGGG--TTCSEEEECTTSC
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChh---hhHHHHCCC----eEEECCccccC--CCCCEEEECCCcC
Confidence            34555453 34554  4556666799999999863211   123344454    44455444433  3579999988743

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.59  E-value=0.67  Score=38.74  Aligned_cols=73  Identities=18%  Similarity=0.044  Sum_probs=55.5

Q ss_pred             CCeEEeccCCCcHHHHHH----HHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CC
Q psy15742        190 SDVVIDGFCGCGGNTIQF----AAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  253 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~----a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~  253 (342)
                      |++|.=+..|+++++..+    ++. |.+|+..+.+++.++.+.+.++..+.  ++.++.+|+.+..           ..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            667755655666666554    444 78999999999999999999888775  6889999987753           12


Q ss_pred             CCccEEEEcCC
Q psy15742        254 LQGDVVFLSPP  264 (342)
Q Consensus       254 ~~~D~Ii~nPP  264 (342)
                      ++.|++|.|-=
T Consensus        80 g~iDiLVnNAG   90 (275)
T d1wmaa1          80 GGLDVLVNNAG   90 (275)
T ss_dssp             SSEEEEEECCC
T ss_pred             CCcEEEEEcCC
Confidence            57999999853

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.56  E-value=0.21  Score=39.20  Aligned_cols=44  Identities=20%  Similarity=0.157  Sum_probs=34.7

Q ss_pred             cCCCCeEEeccCCC-cHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHH
Q psy15742        187 CKASDVVIDGFCGC-GGNTIQFAAV-C-QKVISIDIDPAKLRLAQHN  230 (342)
Q Consensus       187 ~~~~~~vLDlgcGt-G~~~~~~a~~-~-~~v~gvD~s~~~l~~a~~n  230 (342)
                      +++|++|+=.|||. |..++.+++. | .+|+++|.+++.++.|++.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            56799999999874 4455555665 4 7999999999999998875

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.34  E-value=1.2  Score=36.54  Aligned_cols=72  Identities=15%  Similarity=0.088  Sum_probs=51.4

Q ss_pred             CCeEEeccCCCc---HHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-------CCCCccEE
Q psy15742        190 SDVVIDGFCGCG---GNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDVV  259 (342)
Q Consensus       190 ~~~vLDlgcGtG---~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-------~~~~~D~I  259 (342)
                      |+++|=.|++.|   .++..+++.|.+|+.+|.+++.++.+.+...      ++..++.|+.+..       .-++.|++
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~------~~~~~~~Dv~d~~~v~~~~~~~g~iDil   80 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP------GIEPVCVDLGDWEATERALGSVGPVDLL   80 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC------CCeEEEEeCCCHHHHHHHHHHhCCceEE
Confidence            778888887665   2445556669999999999988876655432      4678888987642       23589999


Q ss_pred             EEcCCCCC
Q psy15742        260 FLSPPWGG  267 (342)
Q Consensus       260 i~nPP~~~  267 (342)
                      |.|.....
T Consensus        81 VnnAg~~~   88 (244)
T d1pr9a_          81 VNNAAVAL   88 (244)
T ss_dssp             EECCCCCC
T ss_pred             Eecccccc
Confidence            98865443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.13  E-value=0.23  Score=38.88  Aligned_cols=43  Identities=23%  Similarity=0.275  Sum_probs=35.9

Q ss_pred             cCCCCeEEeccCCC-cHHHHHHHHh-C-CEEEEEeCCHHHHHHHHH
Q psy15742        187 CKASDVVIDGFCGC-GGNTIQFAAV-C-QKVISIDIDPAKLRLAQH  229 (342)
Q Consensus       187 ~~~~~~vLDlgcGt-G~~~~~~a~~-~-~~v~gvD~s~~~l~~a~~  229 (342)
                      +++|++|+=+|||. |..++.+++. | ..|+.+|.+++.++.|++
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~   71 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA   71 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH
Confidence            56799999999986 7788888886 4 589999999998877775

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=87.85  E-value=1  Score=37.08  Aligned_cols=69  Identities=12%  Similarity=-0.084  Sum_probs=51.3

Q ss_pred             EeccCCCcHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCCccE
Q psy15742        194 IDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGDV  258 (342)
Q Consensus       194 LDlgcGtG~~~~~~----a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~~D~  258 (342)
                      |=-|+ +++++...    ++.|.+|+.+|.+++.++.+.+.+...|.  ++.++.+|+.+..           .-++.|+
T Consensus         5 lITGa-s~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           5 LVTGA-GQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             EEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             EEcCC-ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            44454 45555544    45599999999999999999888887774  7889999998742           1357999


Q ss_pred             EEEcCCC
Q psy15742        259 VFLSPPW  265 (342)
Q Consensus       259 Ii~nPP~  265 (342)
                      +|.|--.
T Consensus        82 lVnnAG~   88 (255)
T d1gega_          82 IVNNAGV   88 (255)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9988543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.58  E-value=0.47  Score=36.62  Aligned_cols=45  Identities=18%  Similarity=0.090  Sum_probs=33.8

Q ss_pred             hcCCCCeEEeccCCCc-HHHHHHHHh-CC-EEEEEeCCHHHHHHHHHH
Q psy15742        186 RCKASDVVIDGFCGCG-GNTIQFAAV-CQ-KVISIDIDPAKLRLAQHN  230 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG-~~~~~~a~~-~~-~v~gvD~s~~~l~~a~~n  230 (342)
                      .+++|++|+=+|||.. ..+..+++. |. +|+++|.++..++.|++.
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence            3567899999998754 445555554 55 899999999999988653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.36  E-value=1.4  Score=37.00  Aligned_cols=76  Identities=17%  Similarity=0.104  Sum_probs=53.2

Q ss_pred             CCeEEeccCCCc---HHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCG---GNTIQFAAVCQKVISIDIDPAKLRLAQHNASV-YGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG---~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~-~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      |+++|=-|++.|   .++..+++.|.+|+.+|.+...++.+.+.+.. .|.  ++.++.+|+.+..           ..+
T Consensus        25 gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          25 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGN--KVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSS--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCC--ceEEEEecccChHHHHHHhhhhhhhcc
Confidence            667777776655   23444455699999999999988777766643 343  6888999987642           235


Q ss_pred             CccEEEEcCCCCC
Q psy15742        255 QGDVVFLSPPWGG  267 (342)
Q Consensus       255 ~~D~Ii~nPP~~~  267 (342)
                      ..|+++.|.-...
T Consensus       103 ~iDilvnnAg~~~  115 (294)
T d1w6ua_         103 HPNIVINNAAGNF  115 (294)
T ss_dssp             SCSEEEECCCCCC
T ss_pred             ccchhhhhhhhcc
Confidence            7899998765443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.17  E-value=0.34  Score=35.67  Aligned_cols=60  Identities=15%  Similarity=0.217  Sum_probs=45.6

Q ss_pred             cCCCcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEEcCC
Q psy15742        197 FCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPP  264 (342)
Q Consensus       197 gcGtG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~nPP  264 (342)
                      =||.|..+..+++.  +..++.+|.++...+.++.    .    .+.++.||..+..     .-.+.+.+++..|
T Consensus         5 I~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----~----~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           5 ICGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----S----GANFVHGDPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             EESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----T----TCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             EECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----c----CccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence            37889999999986  7788999999998876543    2    4678999987642     2347888888766

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.90  E-value=1.4  Score=36.48  Aligned_cols=76  Identities=11%  Similarity=-0.100  Sum_probs=56.7

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----------C--CC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----------P--SL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----------~--~~  254 (342)
                      |+++|=-|++.|.   .+..+++.|.+|+.+|.+++.++.+.+.+...+.  ++.++.+|+.+..          .  .+
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   85 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMFGG   85 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            7778877776654   4445556699999999999999988888877664  7899999987542          1  25


Q ss_pred             CccEEEEcCCCCC
Q psy15742        255 QGDVVFLSPPWGG  267 (342)
Q Consensus       255 ~~D~Ii~nPP~~~  267 (342)
                      ..|+++.|.....
T Consensus        86 ~idilvnnAG~~~   98 (259)
T d1xq1a_          86 KLDILINNLGAIR   98 (259)
T ss_dssp             CCSEEEEECCC--
T ss_pred             CcccccccccccC
Confidence            7899999866544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=86.85  E-value=0.32  Score=35.87  Aligned_cols=59  Identities=14%  Similarity=0.111  Sum_probs=41.0

Q ss_pred             CCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEEcCC
Q psy15742        198 CGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPP  264 (342)
Q Consensus       198 cGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~nPP  264 (342)
                      ||-|.++..+++.    |..|+.+|.|++.++.++.    .    ....+.+|+.+..     .-...|.+++--|
T Consensus         6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~----~----~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~   73 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----Y----ATHAVIANATEENELLSLGIRNFEYVIVAIG   73 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT----T----CSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH----h----CCcceeeecccchhhhccCCccccEEEEEcC
Confidence            4667777777653    8999999999999887642    2    2356778887643     1236788877544

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.73  E-value=0.75  Score=36.20  Aligned_cols=74  Identities=11%  Similarity=-0.052  Sum_probs=49.4

Q ss_pred             CCCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC----CCCCccEEEE
Q psy15742        189 ASDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFL  261 (342)
Q Consensus       189 ~~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~----~~~~~D~Ii~  261 (342)
                      +|+++|=.|++.|.   ++..+++.|.+|+.++.+++.++.+.+.+..+.   ++.+...|..+..    .-+..|++|.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~iDilin   98 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEAVKGAHFVFT   98 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHHhcCcCeeee
Confidence            47788777765553   334445569999999999999988888876543   3344555554321    1246899998


Q ss_pred             cCCC
Q psy15742        262 SPPW  265 (342)
Q Consensus       262 nPP~  265 (342)
                      +.+.
T Consensus        99 ~Ag~  102 (191)
T d1luaa1          99 AGAI  102 (191)
T ss_dssp             CCCT
T ss_pred             cCcc
Confidence            8553

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=86.65  E-value=0.79  Score=34.53  Aligned_cols=63  Identities=16%  Similarity=0.034  Sum_probs=43.7

Q ss_pred             CCCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----CCCCccEEEEcCC
Q psy15742        198 CGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPP  264 (342)
Q Consensus       198 cGtG~~~~~~a~~----~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~D~Ii~nPP  264 (342)
                      ||.|.++..+++.    +..++.+|.+++...........    ..+.++.||..+..     .-...|.|++-.+
T Consensus         9 ~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~   80 (153)
T d1id1a_           9 CGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGIDRCRAILALSD   80 (153)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred             ECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHhccccCCEEEEccc
Confidence            6667777777653    89999999998765444444432    25789999987652     2246888888655

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.60  E-value=1.2  Score=36.76  Aligned_cols=74  Identities=15%  Similarity=0.010  Sum_probs=52.8

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNA-SVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~-~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      |+++|=-|++.|.   .+..+++.|.+|+.+|.+++.++.+.+.+ +..|.  ++.++.+|+.+..           .-+
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV--ETMAFRCDVSNYEEVKKLLEAVKEKFG   82 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            6677777766553   34455566999999999999887776665 44454  6888999987642           124


Q ss_pred             CccEEEEcCCC
Q psy15742        255 QGDVVFLSPPW  265 (342)
Q Consensus       255 ~~D~Ii~nPP~  265 (342)
                      ..|++|.|--.
T Consensus        83 ~iDiLVnnAG~   93 (251)
T d1vl8a_          83 KLDTVVNAAGI   93 (251)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999988543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=86.41  E-value=1.2  Score=36.61  Aligned_cols=75  Identities=16%  Similarity=-0.012  Sum_probs=52.9

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~  255 (342)
                      |+++|=-|++.|.   ++..+++.|.+|+.+|.+++.++.+.+.+..   .+++.++.+|+.+..           .-+.
T Consensus         6 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   82 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKAFGP   82 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            6677766655542   3444455699999999999998888776642   347899999998642           1257


Q ss_pred             ccEEEEcCCCCC
Q psy15742        256 GDVVFLSPPWGG  267 (342)
Q Consensus       256 ~D~Ii~nPP~~~  267 (342)
                      .|++|.|.-...
T Consensus        83 iDiLVnnAg~~~   94 (251)
T d1zk4a1          83 VSTLVNNAGIAV   94 (251)
T ss_dssp             CCEEEECCCCCC
T ss_pred             ceEEEecccccc
Confidence            899998865443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=86.39  E-value=0.34  Score=37.83  Aligned_cols=43  Identities=14%  Similarity=0.070  Sum_probs=33.4

Q ss_pred             cCCCCeEEeccCCCcH-HHHHHHHh--CCEEEEEeCCHHHHHHHHH
Q psy15742        187 CKASDVVIDGFCGCGG-NTIQFAAV--CQKVISIDIDPAKLRLAQH  229 (342)
Q Consensus       187 ~~~~~~vLDlgcGtG~-~~~~~a~~--~~~v~gvD~s~~~l~~a~~  229 (342)
                      +++|++|+=+|||..+ .++.+++.  +.+|+++|.++..++.|++
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            5689999999998433 45555554  4689999999999988875

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.18  E-value=1.8  Score=35.85  Aligned_cols=77  Identities=12%  Similarity=-0.027  Sum_probs=56.1

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDID-PAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s-~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      |+++|=-|++.|.   ++..+++.|.+|+..|.+ .+.++.+.+.++..+.  ++.++.+|+.+..           ..+
T Consensus        18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            6777777776663   455556669999999976 6677777777777775  7889999988742           124


Q ss_pred             CccEEEEcCCCCCC
Q psy15742        255 QGDVVFLSPPWGGP  268 (342)
Q Consensus       255 ~~D~Ii~nPP~~~~  268 (342)
                      ..|+++.|......
T Consensus        96 ~idilV~nag~~~~  109 (272)
T d1g0oa_          96 KLDIVCSNSGVVSF  109 (272)
T ss_dssp             CCCEEEECCCCCCC
T ss_pred             CCCccccccccchh
Confidence            78999988765543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.06  E-value=1.4  Score=36.23  Aligned_cols=76  Identities=12%  Similarity=-0.072  Sum_probs=55.0

Q ss_pred             CCeEEeccCCCcHHHHH----HHHhCCEEEE-EeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CC
Q psy15742        190 SDVVIDGFCGCGGNTIQ----FAAVCQKVIS-IDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS  253 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~----~a~~~~~v~g-vD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~  253 (342)
                      |+++|=.| |+++++.+    +++.|.+|+. .+.+...++.+.+.+..+|.  ++.++.+|+.+..           ..
T Consensus         6 GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           6 GKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             TCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHHHc
Confidence            77888666 45555444    4555888876 46788888998998888875  7889999987642           12


Q ss_pred             CCccEEEEcCCCCCC
Q psy15742        254 LQGDVVFLSPPWGGP  268 (342)
Q Consensus       254 ~~~D~Ii~nPP~~~~  268 (342)
                      +..|+++.|......
T Consensus        83 g~idilinnag~~~~   97 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVW   97 (259)
T ss_dssp             SCEEEEECCCCCCCC
T ss_pred             CCCcEEEeccccccc
Confidence            479999998765543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=85.60  E-value=0.56  Score=36.46  Aligned_cols=68  Identities=13%  Similarity=0.162  Sum_probs=47.9

Q ss_pred             CCeEEeccCCC-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccCC-CCCccEEEEc
Q psy15742        190 SDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLS  262 (342)
Q Consensus       190 ~~~vLDlgcGt-G~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~~-~~~~D~Ii~n  262 (342)
                      +.+|+=+|+|. |..++..|.. |..|+.+|.+++.++..+....     .++++...+-..+.. -...|+||.-
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~~~~~aDivI~a  102 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIETAVAEADLLIGA  102 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHHhhccCcEEEEe
Confidence            56899999995 5566666766 9999999999999988776553     245565554433321 1268999975

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.30  E-value=0.84  Score=34.73  Aligned_cols=44  Identities=30%  Similarity=0.343  Sum_probs=34.2

Q ss_pred             hcCCCCeEEeccCCC-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q psy15742        186 RCKASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQH  229 (342)
Q Consensus       186 ~~~~~~~vLDlgcGt-G~~~~~~a~~-~~~v~gvD~s~~~l~~a~~  229 (342)
                      .+++|++|+=.|||. |..++.+++. |.+|+++|.++..++.+++
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh
Confidence            356788998888875 4455555665 8899999999999888765

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.18  E-value=1.6  Score=35.78  Aligned_cols=73  Identities=14%  Similarity=-0.026  Sum_probs=52.4

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~  255 (342)
                      |+++|=-|++.|.   ++..+++.|.+|+.+|.+++.++.+.+.+.     +++.++.+|+.+..           ..+.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   80 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVTAFGG   80 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----CcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            6677777766653   444555669999999999988877766553     36888999987642           1247


Q ss_pred             ccEEEEcCCCCC
Q psy15742        256 GDVVFLSPPWGG  267 (342)
Q Consensus       256 ~D~Ii~nPP~~~  267 (342)
                      .|+++.|.-...
T Consensus        81 idilinnAG~~~   92 (244)
T d1nffa_          81 LHVLVNNAGILN   92 (244)
T ss_dssp             CCEEEECCCCCC
T ss_pred             CeEEEECCcccC
Confidence            899999876544

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.13  E-value=1.1  Score=34.50  Aligned_cols=45  Identities=27%  Similarity=0.235  Sum_probs=33.9

Q ss_pred             hcCCCCeEEeccCCCcH-HHHHHHHh--CCEEEEEeCCHHHHHHHHHH
Q psy15742        186 RCKASDVVIDGFCGCGG-NTIQFAAV--CQKVISIDIDPAKLRLAQHN  230 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~-~~~~~a~~--~~~v~gvD~s~~~l~~a~~n  230 (342)
                      .+++|++|+=.|+|..+ .++.+++.  +..|+++|.+++.++.+++.
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc
Confidence            35778999999987544 44566654  57899999999988887753

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=84.47  E-value=1.6  Score=36.07  Aligned_cols=75  Identities=17%  Similarity=0.063  Sum_probs=53.0

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDID-PAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s-~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      |+++|=-|++.|.   ++..+++.|.+|+.++.+ +..++.+.+.++..|.  ++.++.+|+.+..           ..+
T Consensus         7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~G   84 (261)
T d1geea_           7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG--EAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            6677766666553   344455569999999987 4567777777777764  7889999997642           124


Q ss_pred             CccEEEEcCCCC
Q psy15742        255 QGDVVFLSPPWG  266 (342)
Q Consensus       255 ~~D~Ii~nPP~~  266 (342)
                      +.|++|.|.-..
T Consensus        85 ~iDiLVnnAG~~   96 (261)
T d1geea_          85 KLDVMINNAGLE   96 (261)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEeeccceec
Confidence            789999986543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=84.18  E-value=0.54  Score=36.14  Aligned_cols=70  Identities=17%  Similarity=0.097  Sum_probs=46.0

Q ss_pred             hcCCCCeEEeccCC-CcHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc--CCCCCccEEEE
Q psy15742        186 RCKASDVVIDGFCG-CGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL--APSLQGDVVFL  261 (342)
Q Consensus       186 ~~~~~~~vLDlgcG-tG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~--~~~~~~D~Ii~  261 (342)
                      .+++|++|+=+||| .|.+++.+|+. |.+++++|.++...+.+++    .|.+   .++..+-.+.  .....+|+++-
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~----lGad---~~i~~~~~~~~~~~~~~~D~vid   99 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAHLKSFDFILN   99 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTTTTCEEEEEE
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc----cCCc---EEEECchhhHHHHhcCCCceeee
Confidence            46789999988886 46667777776 8899999999988877764    3542   2332221111  12346998886


Q ss_pred             c
Q psy15742        262 S  262 (342)
Q Consensus       262 n  262 (342)
                      .
T Consensus       100 ~  100 (168)
T d1uufa2         100 T  100 (168)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.86  E-value=0.66  Score=31.96  Aligned_cols=55  Identities=13%  Similarity=0.111  Sum_probs=34.3

Q ss_pred             HHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccccCCCCCccEEEEcCCCC
Q psy15742        202 GNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG-DFFALAPSLQGDVVFLSPPWG  266 (342)
Q Consensus       202 ~~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~-D~~~~~~~~~~D~Ii~nPP~~  266 (342)
                      .++..+.+.|..|+|.|..+..   ..+.++..|+  .+  ..+ |..++   ...|+||..|...
T Consensus        16 ~LA~~L~~~G~~VsGSD~~~~~---~t~~L~~~Gi--~i--~~gh~~~~i---~~~d~vV~SsAI~   71 (89)
T d1j6ua1          16 AVALHEFSNGNDVYGSNIEETE---RTAYLRKLGI--PI--FVPHSADNW---YDPDLVIKTPAVR   71 (89)
T ss_dssp             HHHHHHHHTTCEEEEECSSCCH---HHHHHHHTTC--CE--ESSCCTTSC---CCCSEEEECTTCC
T ss_pred             HHHHHHHhCCCeEEEEeCCCCh---hHHHHHHCCC--eE--Eeeeccccc---CCCCEEEEecCcC
Confidence            3445555669999999988632   2234777776  33  333 32222   3589999988754

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=83.84  E-value=0.91  Score=34.98  Aligned_cols=43  Identities=19%  Similarity=0.074  Sum_probs=35.4

Q ss_pred             cCCCCeEEeccCC--CcHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q psy15742        187 CKASDVVIDGFCG--CGGNTIQFAAV-CQKVISIDIDPAKLRLAQH  229 (342)
Q Consensus       187 ~~~~~~vLDlgcG--tG~~~~~~a~~-~~~v~gvD~s~~~l~~a~~  229 (342)
                      +++|++||=.|+|  .|..++.+|+. |.+|++++.|++..+.+++
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~   71 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK   71 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh
Confidence            5678898877555  67788888887 9999999999999888764

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.67  E-value=2  Score=34.99  Aligned_cols=70  Identities=13%  Similarity=-0.007  Sum_probs=48.3

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-------CCCCccEE
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDVV  259 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-------~~~~~D~I  259 (342)
                      |+++|=-|++.|.   ++..+++.|.+|+.+|.+++.++.+.+..      .++..+.+|+.+..       .-++.|++
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~iDil   78 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPVDLL   78 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCCCeEE
Confidence            7778866665553   34444556999999999998776665543      25678888987642       23579999


Q ss_pred             EEcCCC
Q psy15742        260 FLSPPW  265 (342)
Q Consensus       260 i~nPP~  265 (342)
                      |.|--.
T Consensus        79 VnnAg~   84 (242)
T d1cyda_          79 VNNAAL   84 (242)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            988543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.44  E-value=1.9  Score=35.42  Aligned_cols=71  Identities=20%  Similarity=0.057  Sum_probs=49.9

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~  255 (342)
                      |+++|=-|++.|.   ++..+++.|.+|+.+|.+++.++...+..      +++.++.+|+.+..           .-++
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRRFGR   79 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            7777777766553   34444556999999999998887665543      25788999987642           1247


Q ss_pred             ccEEEEcCCCC
Q psy15742        256 GDVVFLSPPWG  266 (342)
Q Consensus       256 ~D~Ii~nPP~~  266 (342)
                      .|++|.|.-..
T Consensus        80 iDilVnnAG~~   90 (250)
T d1ydea1          80 LDCVVNNAGHH   90 (250)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCEEEeccccc
Confidence            89999986533

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=83.26  E-value=3.1  Score=33.80  Aligned_cols=72  Identities=11%  Similarity=-0.070  Sum_probs=50.0

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~  255 (342)
                      |+++|=-|++.|.   .+..+++.|.+|+.+|.+++.++...+.+.     .+...+.+|+.+..           .-+.
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   78 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAEFGE   78 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcccCC
Confidence            6667766665542   344445569999999999998887766553     36778889987642           1357


Q ss_pred             ccEEEEcCCCC
Q psy15742        256 GDVVFLSPPWG  266 (342)
Q Consensus       256 ~D~Ii~nPP~~  266 (342)
                      .|++|.|.-..
T Consensus        79 iDilVnnAg~~   89 (243)
T d1q7ba_          79 VDILVNNAGIT   89 (243)
T ss_dssp             CSEEEECCCCC
T ss_pred             cceehhhhhhc
Confidence            99999886443

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.20  E-value=2.3  Score=35.86  Aligned_cols=75  Identities=11%  Similarity=-0.055  Sum_probs=52.9

Q ss_pred             CCeEEeccCCCcHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEEEccccccC-----------
Q psy15742        190 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGV---SHKIQFIQGDFFALA-----------  251 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~----a~~~~~v~gvD~s~~~l~~a~~n~~~~gl---~~~i~~~~~D~~~~~-----------  251 (342)
                      |+++|=-|++.| ++..+    ++.|.+|+.+|.+++.++.+.+.+.....   ..++.++.+|+.+..           
T Consensus        12 gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   90 (297)
T d1yxma1          12 GQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD   90 (297)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHHH
Confidence            667776665554 55444    45599999999999999888777754321   237889999988652           


Q ss_pred             CCCCccEEEEcCCC
Q psy15742        252 PSLQGDVVFLSPPW  265 (342)
Q Consensus       252 ~~~~~D~Ii~nPP~  265 (342)
                      ..+..|++|.|...
T Consensus        91 ~~G~iDiLVnnAg~  104 (297)
T d1yxma1          91 TFGKINFLVNNGGG  104 (297)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HhCCeEEEEeeccc
Confidence            12478999988643

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=82.08  E-value=0.67  Score=35.70  Aligned_cols=44  Identities=16%  Similarity=0.240  Sum_probs=33.2

Q ss_pred             hcCCCCeEEeccCCCcHH-HHHHHHh--CCEEEEEeCCHHHHHHHHH
Q psy15742        186 RCKASDVVIDGFCGCGGN-TIQFAAV--CQKVISIDIDPAKLRLAQH  229 (342)
Q Consensus       186 ~~~~~~~vLDlgcGtG~~-~~~~a~~--~~~v~gvD~s~~~l~~a~~  229 (342)
                      .+++|++|+=+|||.++. +..+++.  +..|+++|.+++.++.|++
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            357899999999987554 3334443  6789999999998888764

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=81.90  E-value=1.6  Score=36.05  Aligned_cols=75  Identities=16%  Similarity=0.008  Sum_probs=51.8

Q ss_pred             CCeEEeccCCCcHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEEccccccC-----------CC
Q psy15742        190 SDVVIDGFCGCGGNTIQ----FAAVCQKVISIDIDPAKLRLAQHNA-SVYGVSHKIQFIQGDFFALA-----------PS  253 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~----~a~~~~~v~gvD~s~~~l~~a~~n~-~~~gl~~~i~~~~~D~~~~~-----------~~  253 (342)
                      |+++|=-|++ ++++..    +++.|.+|+.+|.+++.++.+.+.+ +..|.  ++.++.+|+.+..           ..
T Consensus         9 gK~alITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (260)
T d1h5qa_           9 NKTIIVTGGN-RGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGV--KTKAYQCDVSNTDIVTKTIQQIDADL   85 (260)
T ss_dssp             TEEEEEETTT-SHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTC--CEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCC--ceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            6667766655 454444    4556999999999987776655554 44454  7889999987642           23


Q ss_pred             CCccEEEEcCCCCC
Q psy15742        254 LQGDVVFLSPPWGG  267 (342)
Q Consensus       254 ~~~D~Ii~nPP~~~  267 (342)
                      +..|++|.|.....
T Consensus        86 g~iDilVnnAg~~~   99 (260)
T d1h5qa_          86 GPISGLIANAGVSV   99 (260)
T ss_dssp             CSEEEEEECCCCCC
T ss_pred             CCCcEecccccccc
Confidence            58999999876543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=81.88  E-value=1.5  Score=36.14  Aligned_cols=72  Identities=14%  Similarity=-0.023  Sum_probs=50.6

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~  255 (342)
                      |+++|=-|++.|.   ++..+++.|.+|+.+|.+++.++...+.+   +  +++.++.+|+.+..           .-++
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---G--DAARYQHLDVTIEEDWQRVVAYAREEFGS   79 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---G--GGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CceEEEEcccCCHHHHHHHHHHHHHHcCC
Confidence            6677777776662   45555666999999999998776554433   2  47899999987642           1247


Q ss_pred             ccEEEEcCCCC
Q psy15742        256 GDVVFLSPPWG  266 (342)
Q Consensus       256 ~D~Ii~nPP~~  266 (342)
                      .|++|.|.-..
T Consensus        80 iDilVnnAg~~   90 (254)
T d1hdca_          80 VDGLVNNAGIS   90 (254)
T ss_dssp             CCEEEECCCCC
T ss_pred             ccEEEecCccc
Confidence            89999886443

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=81.41  E-value=1.7  Score=35.76  Aligned_cols=72  Identities=17%  Similarity=0.020  Sum_probs=50.4

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~  255 (342)
                      |+++|=-|++.|.   .+..+++.|.+|+.+|.+++.++.+.+.+   +  .+..++.+|+.+..           .-+.
T Consensus         6 gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   80 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRRLGT   80 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            6677777765552   34444556999999999998887766554   3  36778889987642           1247


Q ss_pred             ccEEEEcCCCC
Q psy15742        256 GDVVFLSPPWG  266 (342)
Q Consensus       256 ~D~Ii~nPP~~  266 (342)
                      .|++|.|.-..
T Consensus        81 iDilVnnAG~~   91 (253)
T d1hxha_          81 LNVLVNNAGIL   91 (253)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCeEEeccccc
Confidence            89999987543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.09  E-value=0.76  Score=35.31  Aligned_cols=45  Identities=22%  Similarity=0.215  Sum_probs=33.7

Q ss_pred             hcCCCCeEEeccCC-CcHHHHHHHHh--CCEEEEEeCCHHHHHHHHHH
Q psy15742        186 RCKASDVVIDGFCG-CGGNTIQFAAV--CQKVISIDIDPAKLRLAQHN  230 (342)
Q Consensus       186 ~~~~~~~vLDlgcG-tG~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n  230 (342)
                      .+++|++|+=.||| .|.+++.+++.  +..|+++|.++..++.+++.
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence            35789999888776 44456666665  47899999999988887753

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=80.56  E-value=2.2  Score=35.01  Aligned_cols=73  Identities=14%  Similarity=-0.026  Sum_probs=50.8

Q ss_pred             CCeEEeccCCCcH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCCC
Q psy15742        190 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ  255 (342)
Q Consensus       190 ~~~vLDlgcGtG~---~~~~~a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~~  255 (342)
                      |+++|=-|++.|.   .+..+++.|.+|+.+|.+.+.++.+.+.+   +  .++.++.+|+.+..           ..+.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   79 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI---G--PAACAIALDVTDQASIDRCVAELLDRWGS   79 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CceEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            5667766655542   34444556999999999998877766544   3  37888999987642           1247


Q ss_pred             ccEEEEcCCCCC
Q psy15742        256 GDVVFLSPPWGG  267 (342)
Q Consensus       256 ~D~Ii~nPP~~~  267 (342)
                      .|++|.|.-...
T Consensus        80 iDilVnnAg~~~   91 (256)
T d1k2wa_          80 IDILVNNAALFD   91 (256)
T ss_dssp             CCEEEECCCCCC
T ss_pred             ccEEEeeccccc
Confidence            999999876544

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.29  E-value=1.8  Score=35.36  Aligned_cols=67  Identities=18%  Similarity=0.025  Sum_probs=46.5

Q ss_pred             CCeEEeccCCCcHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC-----------CCC
Q psy15742        190 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL  254 (342)
Q Consensus       190 ~~~vLDlgcGtG~~~~~~----a~~~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~-----------~~~  254 (342)
                      |+++|=-|++.| ++...    ++.|.+|+.+|.+++.++.+.+.+       +..++.+|+.+..           .-+
T Consensus         5 gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~~g   76 (242)
T d1ulsa_           5 DKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALAHLG   76 (242)
T ss_dssp             TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHHhcC
Confidence            666776666655 54444    455999999999998887665533       4577889987642           124


Q ss_pred             CccEEEEcCC
Q psy15742        255 QGDVVFLSPP  264 (342)
Q Consensus       255 ~~D~Ii~nPP  264 (342)
                      ..|++|.|--
T Consensus        77 ~iDilVnnAG   86 (242)
T d1ulsa_          77 RLDGVVHYAG   86 (242)
T ss_dssp             SCCEEEECCC
T ss_pred             CceEEEECCc
Confidence            7999998743

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=80.06  E-value=1.5  Score=33.66  Aligned_cols=69  Identities=19%  Similarity=0.212  Sum_probs=44.1

Q ss_pred             cCCCCeEEeccCCC-cHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccC------CCCCcc
Q psy15742        187 CKASDVVIDGFCGC-GGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGD  257 (342)
Q Consensus       187 ~~~~~~vLDlgcGt-G~~~~~~a~~--~~~v~gvD~s~~~l~~a~~n~~~~gl~~~i~~~~~D~~~~~------~~~~~D  257 (342)
                      +++|++|+=+|||. |..++.+++.  ...|+.+|.++..++.|++.    |..   +++..+-.++.      .++.+|
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~---~~i~~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe---EEEeCCCcCHHHHHHHHcCCCCc
Confidence            56789999898874 3345556654  45778899999999888753    542   33433222211      234799


Q ss_pred             EEEEc
Q psy15742        258 VVFLS  262 (342)
Q Consensus       258 ~Ii~n  262 (342)
                      +|+-.
T Consensus        99 ~vid~  103 (174)
T d1f8fa2          99 FALES  103 (174)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            98864