Psyllid ID: psy15750

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MLVGIPIGITFCDSIGYVARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFGDMTV
Secondary Structure (PSIPRED)
cEEccEEEEEEEccccEEEEEEcEEcccccccccccccEEccccEEEcccccccccEEEEEEcccccEEEHHccccEEccEEEEEcccccEEEEEccccEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEccccEEEEEccccccccccccEEEEEEEccccccEcccccccccEEEEEcccccEEEHHccccEEEccccEEEcccccEEEEEcHHEEEEEccccccccEEEc
Coil and Loop (DISEMBL)
mlvgipigitfcdsigyvarvdgtsmqpvcpstymdtlycsieesesgtkrpisvdtvltldkstgllidawgknkfymphgctvdnkgfIWLTDVALhqvfktpytynfgdmtv
Flexible Loop (DISEMBL)
MLVGIPIGITFCDSIGYVARVDGTSMQPVCPSTYMDTLYCSIEesesgtkrpisvDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVfktpytynfgdmtv
Low Complexity Region (SEG)
MLVGIPIGITFCDSIGYVARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFGDMTV
Disordered region (IsUnstruct)
**VGIPIGITFCDSIGYVARVDGTSMQPVCPSTYMDTLYCSIE*******RPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFG****
Disordered Region (DISOPRED)
MLVGIPIGITFCDSIGYVARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTY**GDM**
Disordered Region (DISEMBL)
MLVGIPIGITFCDSIGYVARVDGTSMQPVCPSTYMDTLYCSIE********PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFGDMTV
Disordered Region (DISPRO)
MLVGIPIGITFCDSIGYVARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFGDMTV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLVGIPIGITFCDSIGYVARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFGDMTV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
Q9V5E1	541	Peptidyl-alpha-hydroxygly	yes	N/A	0.469	0.099	0.592	4e-13
Q9W1L5	406	Peptidyl-alpha-hydroxygly	no	N/A	0.452	0.128	0.538	7e-12
P10731	972	Peptidyl-glycine alpha-am	yes	N/A	0.452	0.053	0.519	4e-11
P19021	973	Peptidyl-glycine alpha-am	yes	N/A	0.452	0.053	0.519	4e-11
P14925	976	Peptidyl-glycine alpha-am	yes	N/A	0.452	0.053	0.519	4e-11
P97467	979	Peptidyl-glycine alpha-am	yes	N/A	0.452	0.053	0.519	5e-11
P08478	935	Peptidyl-glycine alpha-am	N/A	N/A	0.452	0.055	0.519	2e-10
P12890	875	Peptidyl-glycine alpha-am	N/A	N/A	0.452	0.059	0.5	7e-10
P91268	350	Probable peptidyl-alpha-h	yes	N/A	0.313	0.102	0.583	1e-06

>sp|Q9V5E1|PAL1_DROME Peptidyl-alpha-hydroxyglycine alpha-amidating lyase 1 OS=Drosophila melanogaster GN=Pal1 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 39/54 (72%)

Query: 52  PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTP 105
           PI   T+L L+ +TG +   WGKN FYMPHG TVD +  +WLTDVA+HQVFK P
Sbjct: 150 PIRESTILALEPATGKVQYDWGKNFFYMPHGLTVDPEDNVWLTDVAMHQVFKFP 203

Probable lyase that catalyzes an essential reaction in C-terminal alpha-amidation of peptides. Mediates the dismutation of the unstable peptidyl(2-hydroxyglycine) intermediate to glyoxylate and the corresponding desglycine peptide amide. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.
Drosophila melanogaster (taxid: 7227)
EC: 4EC: .EC: 3EC: .EC: 2EC: .EC: 5

>sp|Q9W1L5|PAL2_DROME Peptidyl-alpha-hydroxyglycine alpha-amidating lyase 2 OS=Drosophila melanogaster GN=Pal2 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 34/52 (65%)

Query: 52  PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           PI  +T+  LD  TG +   WG N FYMPHG T+D  G  W+TDVA+HQ FK
Sbjct: 154 PIKENTIYVLDAKTGAIKSGWGSNMFYMPHGLTIDLHGNYWITDVAMHQAFK 205

Probable lyase that catalyzes an essential reaction in C-terminal alpha-amidation of peptides. Mediates the dismutation of the unstable peptidyl(2-hydroxyglycine) intermediate to glyoxylate and the corresponding desglycine peptide amide. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.

Drosophila melanogaster (taxid: 7227)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|P10731|AMD_BOVIN Peptidyl-glycine alpha-amidating monooxygenase OS=Bos taurus GN=PAM PE=1 SV=2

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 52  PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           PI  DT+L +D +   ++ + GKN FY+PHG ++D  G  W+TDVALHQVFK
Sbjct: 553 PIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALHQVFK 604

Bifunctional enzyme that catalyzes 2 sequential steps in C-terminal alpha-amidation of peptides. The monooxygenase part produces an unstable peptidyl(2-hydroxyglycine) intermediate that is dismutated to glyoxylate and the corresponding desglycine peptide amide by the lyase part. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|P19021|AMD_HUMAN Peptidyl-glycine alpha-amidating monooxygenase OS=Homo sapiens GN=PAM PE=1 SV=2

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 52  PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           PI  DT+L +D +   ++ + GKN FY+PHG ++D  G  W+TDVALHQVFK
Sbjct: 553 PIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALHQVFK 604

Bifunctional enzyme that catalyzes 2 sequential steps in C-terminal alpha-amidation of peptides. The monooxygenase part produces an unstable peptidyl(2-hydroxyglycine) intermediate that is dismutated to glyoxylate and the corresponding desglycine peptide amide by the lyase part. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|P14925|AMD_RAT Peptidyl-glycine alpha-amidating monooxygenase OS=Rattus norvegicus GN=Pam PE=1 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 52  PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           PI  DT+L +D +   ++ + GKN FY+PHG ++D  G  W+TDVALHQVFK
Sbjct: 556 PIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFK 607

Bifunctional enzyme that catalyzes 2 sequential steps in C-terminal alpha-amidation of peptides. The monooxygenase part produces an unstable peptidyl(2-hydroxyglycine) intermediate that is dismutated to glyoxylate and the corresponding desglycine peptide amide by the lyase part. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|P97467|AMD_MOUSE Peptidyl-glycine alpha-amidating monooxygenase OS=Mus musculus GN=Pam PE=1 SV=2

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 52  PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           PI  DT+L +D +   ++ + GKN FY+PHG ++D  G  W+TDVALHQVFK
Sbjct: 556 PIEEDTILVIDPNKAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFK 607

Bifunctional enzyme that catalyzes 2 sequential steps in C-terminal alpha-amidation of peptides. The monooxygenase part produces an unstable peptidyl(2-hydroxyglycine) intermediate that is dismutated to glyoxylate and the corresponding desglycine peptide amide by the lyase part. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|P08478|AMDA_XENLA Peptidyl-glycine alpha-amidating monooxygenase A OS=Xenopus laevis GN=pam-a PE=1 SV=3

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 52  PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           PI   T+L +D S+  ++ + GKN F++PHG T+D  G  W+TDVALHQVFK
Sbjct: 449 PIQESTILVVDPSSSKVLKSTGKNLFFLPHGLTIDRDGNYWVTDVALHQVFK 500

Bifunctional enzyme that catalyzes 2 sequential steps in C-terminal alpha-amidation of peptides. The monooxygenase part produces an unstable peptidyl(2-hydroxyglycine) intermediate that is dismutated to glyoxylate and the corresponding desglycine peptide amide by the lyase part. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.

Xenopus laevis (taxid: 8355)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|P12890|AMDB_XENLA Peptidyl-glycine alpha-amidating monooxygenase B OS=Xenopus laevis GN=pam-b PE=2 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 37/52 (71%)

Query: 52  PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           PI   T+L +D +T  ++ + G+N F++PHG T+D  G  W+TDVALHQVFK
Sbjct: 453 PIQESTILVVDPNTSKVLKSTGQNLFFLPHGLTIDRDGNYWVTDVALHQVFK 504

Bifunctional enzyme that catalyzes 2 sequential steps in C-terminal alpha-amidation of peptides. The monooxygenase part produces an unstable peptidyl(2-hydroxyglycine) intermediate that is dismutated to glyoxylate and the corresponding desglycine peptide amide by the lyase part. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.

Xenopus laevis (taxid: 8355)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|P91268|PAL_CAEEL Probable peptidyl-alpha-hydroxyglycine alpha-amidating lyase F21F3.1 OS=Caenorhabditis elegans GN=F21F3.1 PE=1 SV=2

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 25/36 (69%)

Query: 68  LIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           +ID +G   FYMPHG T+DN G  W+TDV  HQV K
Sbjct: 115 VIDEFGAGLFYMPHGLTIDNNGDYWVTDVGSHQVHK 150

Probable lyase that catalyzes an essential reaction in C-terminal alpha-amidation of peptides. Mediates the dismutation of the unstable peptidyl(2-hydroxyglycine) intermediate to glyoxylate and the corresponding desglycine peptide amide. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.

Caenorhabditis elegans (taxid: 6239)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
242011741	361	peptidyl-glycine alpha-amidating monooxy	0.686	0.218	0.481	1e-14
321460202	378	hypothetical protein DAPPUDRAFT_327379 [	0.469	0.142	0.648	4e-14
401721259	699	peptidylglycine alpha-amidating monooxyg	0.539	0.088	0.580	5e-14
307169779	369	Peptidyl-alpha-hydroxyglycine alpha-amid	0.521	0.162	0.6	2e-13
427780697	764	Putative peptidylglycine alpha-amidating	0.556	0.083	0.514	3e-13
291232539	589	PREDICTED: peptidylglycine alpha-amidati	0.521	0.101	0.55	4e-13
12004982	984	peptidylglycine alpha-amidating monooxyg	0.547	0.064	0.571	3e-12
390351805	694	PREDICTED: uncharacterized protein LOC58	0.469	0.077	0.592	3e-12
12004980	984	peptidylglycine alpha-amidating monooxyg	0.547	0.064	0.571	3e-12
158285357	536	AGAP007606-PA [Anopheles gambiae str. PE	0.504	0.108	0.568	4e-12

>gi|242011741|ref|XP_002426605.1| peptidyl-glycine alpha-amidating monooxygenase, putative [Pediculus humanus corporis] gi|212510754|gb|EEB13867.1| peptidyl-glycine alpha-amidating monooxygenase, putative [Pediculus humanus corporis]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 4/83 (4%)

Query: 25  SMQPVC----PSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMP 80
           + QPV     P  + +T +    + +   + PISVDT+LTLD  TG +I++WG N FYMP
Sbjct: 75  NHQPVIFHRGPRVWDETSFNESHQFQYVNQGPISVDTILTLDSDTGEVINSWGSNFFYMP 134

Query: 81  HGCTVDNKGFIWLTDVALHQVFK 103
           HG T+DN G+ ++TDVALHQ FK
Sbjct: 135 HGLTIDNYGYYYMTDVALHQAFK 157

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321460202|gb|EFX71247.1| hypothetical protein DAPPUDRAFT_327379 [Daphnia pulex]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/54 (64%), Positives = 41/54 (75%)

Query: 52  PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTP 105
           PI  DT++TLD +TG L+D WG N FYMPHG  VD +G  W+TDVALHQVFK P
Sbjct: 127 PIKNDTIVTLDAATGSLVDHWGSNLFYMPHGLEVDAEGNTWVTDVALHQVFKFP 180

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|401721259|gb|AFP99910.1| peptidylglycine alpha-amidating monooxygenase 2 [Acropora millepora]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/62 (58%), Positives = 45/62 (72%)

Query: 44  ESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           E  S  K  I   TVLTLD  TG +I++WG+N F+MPHG T+D++G  WLTDVA+HQVFK
Sbjct: 435 EVFSNQKESIPEATVLTLDSKTGKIINSWGQNMFFMPHGLTIDSEGNTWLTDVAMHQVFK 494

Query: 104 TP 105
            P
Sbjct: 495 FP 496

Source: Acropora millepora

Species: Acropora millepora

Genus: Acropora

Family: Acroporidae

Order: Scleractinia

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|307169779|gb|EFN62324.1| Peptidyl-alpha-hydroxyglycine alpha-amidating lyase 2 [Camponotus floridanus]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 42/60 (70%)

Query: 44  ESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           E +   K PI  DTVLTLD  TG +I  WG + FY+PHG  +DN G IWLTD+ALHQVFK
Sbjct: 110 EYQEKYKGPIRNDTVLTLDPKTGDIIRGWGNHTFYLPHGIHIDNLGNIWLTDIALHQVFK 169

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427780697|gb|JAA55800.1| Putative peptidylglycine alpha-amidating monooxygenase [Rhipicephalus pulchellus]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 6/70 (8%)

Query: 36  DTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTD 95
           + +Y  +EE       PI   TVLTL+   G L+  WG+ +FYMPHG TVD +GFIW+TD
Sbjct: 399 NDVYQRVEEG------PIPESTVLTLEPGNGHLLHRWGRQQFYMPHGLTVDREGFIWVTD 452

Query: 96  VALHQVFKTP 105
           VALHQ+ K P
Sbjct: 453 VALHQIHKYP 462

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291232539|ref|XP_002736199.1| PREDICTED: peptidylglycine alpha-amidating monooxygenase-like [Saccoglossus kowalevskii]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 45/60 (75%)

Query: 46  ESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTP 105
           + G   PI+ D V  L+ ++G L+ +WG ++FYMPHG TVD++G IWLTDVA+HQVFK P
Sbjct: 312 QEGDLGPINNDVVFELESNSGKLVQSWGADQFYMPHGLTVDHEGNIWLTDVAMHQVFKFP 371

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|12004982|gb|AAG44251.1| peptidylglycine alpha-amidating monooxygenase [Calliactis parasitica]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 42/63 (66%)

Query: 43  EESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVF 102
           E +E     PI   TVLTL+ +TG +I  WGKN FY+PHG TVD+   IWLTDV  HQVF
Sbjct: 453 ENNEFLIDTPIQEFTVLTLNANTGTVIGRWGKNMFYLPHGLTVDHHDNIWLTDVGSHQVF 512

Query: 103 KTP 105
           K P
Sbjct: 513 KFP 515

Source: Calliactis parasitica

Species: Calliactis parasitica

Genus: Calliactis

Family: Hormathiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|390351805|ref|XP_792034.3| PREDICTED: uncharacterized protein LOC587198 [Strongylocentrotus purpuratus]

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 42/54 (77%)

Query: 52  PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTP 105
           PIS + +LTLD +TG +ID+WG + FYMPHG  +D +  +W+TDVALHQVFK P
Sbjct: 424 PISDELILTLDPATGNVIDSWGSDLFYMPHGLYIDPEDNMWITDVALHQVFKFP 477

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|12004980|gb|AAG44250.1| peptidylglycine alpha-amidating monooxygenase [Calliactis parasitica]

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 42/63 (66%)

Query: 43  EESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVF 102
           E +E     PI   TVLTL+ +TG +I  WGKN FY+PHG TVD+   IWLTDV  HQVF
Sbjct: 453 ENNEFLIDTPIQEFTVLTLNANTGTVIGRWGKNMFYLPHGLTVDHHDNIWLTDVGSHQVF 512

Query: 103 KTP 105
           K P
Sbjct: 513 KFP 515

Source: Calliactis parasitica

Species: Calliactis parasitica

Genus: Calliactis

Family: Hormathiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|158285357|ref|XP_308266.4| AGAP007606-PA [Anopheles gambiae str. PEST] gi|157019953|gb|EAA04373.4| AGAP007606-PA [Anopheles gambiae str. PEST]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 42/58 (72%)

Query: 46  ESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           +  T  PI+  TVL  +++TG L+  WG+N FYMPHG TVD++   WLTDVALHQVFK
Sbjct: 106 QEATGGPIAQPTVLKFNRNTGELLQQWGENLFYMPHGLTVDHEQNYWLTDVALHQVFK 163

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
FB|FBgn0033466	541	Pal1 "Peptidyl-alpha-hydroxygl	0.469	0.099	0.592	3.1e-12
FB|FBgn0262728	406	Pal2 "Peptidyl-alpha-hydroxygl	0.486	0.137	0.508	1e-11
UNIPROTKB|E2R682	679	PAM "Uncharacterized protein"	0.452	0.076	0.538	1.1e-10
UNIPROTKB|F6X870	807	PAM "Uncharacterized protein"	0.452	0.064	0.538	1.4e-10
UNIPROTKB|H7BYD9	679	PAM "Peptidyl-alpha-hydroxygly	0.452	0.076	0.519	1.5e-10
UNIPROTKB|F1RN59	983	PAM "Uncharacterized protein"	0.452	0.052	0.519	1.9e-10
UNIPROTKB|F1Q4G4	1017	PAM "Uncharacterized protein"	0.452	0.051	0.538	2e-10
UNIPROTKB|F8WE90	875	PAM "Peptidyl-alpha-hydroxygly	0.452	0.059	0.519	2.1e-10
UNIPROTKB|F1MZN4	954	PAM "Peptidylglycine alpha-hyd	0.452	0.054	0.519	2.3e-10
UNIPROTKB|F1MZB4	972	PAM "Peptidylglycine alpha-hyd	0.452	0.053	0.519	2.4e-10

FB|FBgn0033466 Pal1 "Peptidyl-alpha-hydroxyglycine-alpha-amidating lyase 1" [Drosophila melanogaster (taxid:7227)]

 Score = 173 (66.0 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 32/54 (59%), Positives = 39/54 (72%)

Query:    52 PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTP 105
             PI   T+L L+ +TG +   WGKN FYMPHG TVD +  +WLTDVA+HQVFK P
Sbjct:   150 PIRESTILALEPATGKVQYDWGKNFFYMPHGLTVDPEDNVWLTDVAMHQVFKFP 203

GO:0004504 "peptidylglycine monooxygenase activity" evidence=ISS

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0004598 "peptidylamidoglycolate lyase activity" evidence=IDA

FB|FBgn0262728 Pal2 "Peptidyl-alpha-hydroxyglycine-alpha-amidating lyase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 166 (63.5 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 29/57 (50%), Positives = 37/57 (64%)

Query:    52 PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK-TPYT 107
             PI  +T+  LD  TG +   WG N FYMPHG T+D  G  W+TDVA+HQ FK  P++
Sbjct:   154 PIKENTIYVLDAKTGAIKSGWGSNMFYMPHGLTIDLHGNYWITDVAMHQAFKFKPFS 210

GO:0004598 "peptidylamidoglycolate lyase activity" evidence=NAS;IDA

GO:0044237 "cellular metabolic process" evidence=IMP

GO:0005576 "extracellular region" evidence=IDA

UNIPROTKB|E2R682 PAM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 160 (61.4 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 28/52 (53%), Positives = 37/52 (71%)

Query:    52 PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
             PI  DT+L +D +   ++ + GKN FY+PHG +VD  G  W+TDVALHQVFK
Sbjct:   325 PIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSVDKDGNYWVTDVALHQVFK 376

GO:0016020 "membrane" evidence=IEA

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0004504 "peptidylglycine monooxygenase activity" evidence=IEA

UNIPROTKB|F6X870 PAM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 160 (61.4 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 28/52 (53%), Positives = 37/52 (71%)

Query:    52 PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
             PI  DT+L +D +   ++ + GKN FY+PHG +VD  G  W+TDVALHQVFK
Sbjct:   386 PIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSVDKDGNYWVTDVALHQVFK 437

GO:0016020 "membrane" evidence=IEA

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0004504 "peptidylglycine monooxygenase activity" evidence=IEA

UNIPROTKB|H7BYD9 PAM "Peptidyl-alpha-hydroxyglycine alpha-amidating lyase" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query:    52 PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
             PI  DT+L +D +   ++ + GKN FY+PHG ++D  G  W+TDVALHQVFK
Sbjct:   326 PIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALHQVFK 377

GO:0004504 "peptidylglycine monooxygenase activity" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1RN59 PAM "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 160 (61.4 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 27/52 (51%), Positives = 38/52 (73%)

Query:    52 PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
             PI  DT+L +D ++  ++ + GKN FY+PHG ++D  G  W+TDVALHQVFK
Sbjct:   562 PIEEDTILVIDPNSAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALHQVFK 613

GO:0016020 "membrane" evidence=IEA

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0004504 "peptidylglycine monooxygenase activity" evidence=IEA

UNIPROTKB|F1Q4G4 PAM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 160 (61.4 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 28/52 (53%), Positives = 37/52 (71%)

Query:    52 PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
             PI  DT+L +D +   ++ + GKN FY+PHG +VD  G  W+TDVALHQVFK
Sbjct:   549 PIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSVDKDGNYWVTDVALHQVFK 600

GO:0016020 "membrane" evidence=IEA

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0004504 "peptidylglycine monooxygenase activity" evidence=IEA

UNIPROTKB|F8WE90 PAM "Peptidyl-alpha-hydroxyglycine alpha-amidating lyase" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query:    52 PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
             PI  DT+L +D +   ++ + GKN FY+PHG ++D  G  W+TDVALHQVFK
Sbjct:   456 PIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALHQVFK 507

GO:0004504 "peptidylglycine monooxygenase activity" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1MZN4 PAM "Peptidylglycine alpha-hydroxylating monooxygenase" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query:    52 PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
             PI  DT+L +D +   ++ + GKN FY+PHG ++D  G  W+TDVALHQVFK
Sbjct:   553 PIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALHQVFK 604

GO:0016020 "membrane" evidence=IEA

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0004504 "peptidylglycine monooxygenase activity" evidence=IEA

UNIPROTKB|F1MZB4 PAM "Peptidylglycine alpha-hydroxylating monooxygenase" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query:    52 PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
             PI  DT+L +D +   ++ + GKN FY+PHG ++D  G  W+TDVALHQVFK
Sbjct:   553 PIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALHQVFK 604

GO:0016020 "membrane" evidence=IEA

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0004504 "peptidylglycine monooxygenase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P14925	AMD_RAT	4, ., 3, ., 2, ., 5	0.5192	0.4521	0.0532	yes	N/A
P97467	AMD_MOUSE	4, ., 3, ., 2, ., 5	0.5192	0.4521	0.0531	yes	N/A
P19021	AMD_HUMAN	4, ., 3, ., 2, ., 5	0.5192	0.4521	0.0534	yes	N/A
Q9V5E1	PAL1_DROME	4, ., 3, ., 2, ., 5	0.5925	0.4695	0.0998	yes	N/A
P10731	AMD_BOVIN	4, ., 3, ., 2, ., 5	0.5192	0.4521	0.0534	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	115
pfam01436	28	pfam01436, NHL, NHL repeat	1e-04

>gnl|CDD|110440 pfam01436, NHL, NHL repeat

 Score = 36.2 bits (85), Expect = 1e-04
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 77  FYMPHGCTVDNKGFIWLTDVALHQVFK 103
           F  PHG  VD+ G +++ D   H+V  
Sbjct: 1   FNRPHGVAVDSDGDVYVADSENHRVQV 27

The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat pfam00400. The repeats have a catalytic activity in bovine PAM (peptidyl-glycine alpha-amidating monooxygenase), proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats. Human E3 ubiquitin-protein ligase TRIM32 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats. Length = 28

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
KOG1568|consensus	174		99.52
KOG3567|consensus	501		99.29
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	99.16
TIGR02227	163	sigpep_I_bact signal peptidase I, bacterial type.	99.06
PRK10861	324	signal peptidase I; Provisional	99.0
KOG0171|consensus	176		98.9
COG0681	166	LepB Signal peptidase I [Intracellular trafficking	98.19
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.18
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.04
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.93
TIGR02754	90	sod_Ni_protease nickel-type superoxide dismutase m	97.54
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.33
cd06530	85	S26_SPase_I The S26 Type I signal peptidase (SPase	97.09
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.82
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	96.69
PF00717	70	Peptidase_S24: Peptidase S24-like peptidase classi	96.65
TIGR02228	158	sigpep_I_arch signal peptidase I, archaeal type. T	96.56
KOG3567|consensus	501		96.44
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.28
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	96.17
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	96.16
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	96.04
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.8
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.48
KOG4499|consensus	310		95.28
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	95.16
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.05
COG3391	381	Uncharacterized conserved protein [Function unknow	94.79
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	94.41
cd06462	84	Peptidase_S24_S26 The S24, S26 LexA/signal peptida	94.3
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.26
COG3391	381	Uncharacterized conserved protein [Function unknow	94.16
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.15
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.92
COG2932	214	Predicted transcriptional regulator [Transcription	92.29
cd06529	81	S24_LexA-like Peptidase S24 LexA-like proteins are	92.28
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.19
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	91.98
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	91.07
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	90.79
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.3
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	89.81
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	89.25
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	87.99
KOG1214|consensus	1289		87.95
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	86.74
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	86.05
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	85.85
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	85.67
PF07494	24	Reg_prop: Two component regulator propeller; Inter	85.64
KOG3342|consensus	180		85.47
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	85.37
TIGR02771	171	TraF_Ti conjugative transfer signal peptidase TraF	85.06
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	84.69
TIGR02608	55	delta_60_rpt delta-60 repeat domain. This domain o	84.58
KOG1520|consensus	376		83.79
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	83.29
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	83.1
PRK10276	139	DNA polymerase V subunit UmuD; Provisional	81.71
KOG4659|consensus	1899		81.56
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	80.92
PRK13838	176	conjugal transfer pilin processing protease TraF;	80.91

>KOG1568|consensus

Probab=99.52  E-value=8.5e-14  Score=101.11  Aligned_cols=95  Identities=25%  Similarity=0.254  Sum_probs=70.7

Q ss_pred             eeeee--EEEEEecceeeEEEeeeeecCccCCCCc----ccceEEeecccccCCCCCCCCCeEEEE-eCC-CCeEEeEec
Q psy15750          2 LVGIP--IGITFCDSIGYVARVDGTSMQPVCPSTY----MDTLYCSIEESESGTKRPISVDTVLTL-DKS-TGLLIDAWG   73 (115)
Q Consensus         2 ~~~~~--~~~~~~d~v~~~~~v~G~Sm~pt~~~~~----~D~~~~~~~~~~~~~~~~i~~~~I~vf-dp~-~G~~l~~~G   73 (115)
                      +.+++  +++||.|+|+++++|.|.||+||+|+..    .|+++.|+++.  ++ +.+.+++|++| +|+ .++++.+..
T Consensus        15 ~~s~~~~v~~t~~DrV~~va~v~G~smqPtlnP~~~~~~~d~Vll~k~~v--~n-~~~~rGDiVvl~sP~~p~~~~iKRv   91 (174)
T KOG1568|consen   15 TGSLKWHVLLTFSDRVVHVAQVYGSSMQPTLNPTMNTNEKDTVLLRKWNV--KN-RKVSRGDIVVLKSPNDPDKVIIKRV   91 (174)
T ss_pred             eeeeeeheeeeeeeeEEEEeEEecCcCCCccCCCcccccccEEEEEeecc--cc-ceeccCCEEEEeCCCChhheeeeee
Confidence            45566  7799999999999999999999999744    49999999999  44 77888999999 221 133333333


Q ss_pred             CC-------CccCceeEEEccCCCEEEE-eCCCC
Q psy15750         74 KN-------KFYMPHGCTVDNKGFIWLT-DVALH   99 (115)
Q Consensus        74 ~g-------~f~~P~Gi~vd~~g~I~Vt-D~~~h   99 (115)
                      .+       .+..|+-+..-++|++||+ |+..|
T Consensus        92 ~alegd~~~t~~~k~~~v~vpkghcWVegDn~~h  125 (174)
T KOG1568|consen   92 AALEGDIMVTEDEKEEPVVVPKGHCWVEGDNQKH  125 (174)
T ss_pred             ecccccEeccCCCCCCceecCCCcEEEecCCccc
Confidence            21       2445666677789999999 66555

>KOG3567|consensus

Probab=99.29  E-value=1.4e-12  Score=107.08  Aligned_cols=93  Identities=34%  Similarity=0.568  Sum_probs=80.5

Q ss_pred             EEEeeeeecCccCCC-------CcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC
Q psy15750         18 VARVDGTSMQPVCPS-------TYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF   90 (115)
Q Consensus        18 ~~~v~G~Sm~pt~~~-------~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~   90 (115)
                      .++|+|++.+|.-+.       .+||+.++...+.|+ .+++|....|++.++.+-..+.+-|+++|++|||+.+|+||+
T Consensus       401 lgqv~gva~d~~~~l~vfhr~g~vwd~~sfd~~f~~~-~~~pi~~~~ilvi~~~n~~~l~~~g~~~fylphgl~~dkdgf  479 (501)
T KOG3567|consen  401 LGQVSGVALDPKNNLVVFHRGGHVWDGNSFDSKFVYQ-QIGPIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGF  479 (501)
T ss_pred             hheeeeeccCCccceEEEccCCceEeechhhhhhhhh-cccccccceEEEEcCcchhhhhhccCCceecCCcceecCCCc
Confidence            389999999999874       449999877777654 459999999999999555566677899999999999999999


Q ss_pred             EEEEeCCCCEEEEeCCCCCCC
Q psy15750         91 IWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        91 I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      .|++|.+.|+|+|.+++++..
T Consensus       480 ~~~tdvash~v~k~k~~~~e~  500 (501)
T KOG3567|consen  480 YWVTDVASHQVFKLKPNNKEG  500 (501)
T ss_pred             EEeecccchhhhhcccccccC
Confidence            999999999999999998865

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=99.16  E-value=6e-11  Score=62.71  Aligned_cols=28  Identities=39%  Similarity=0.659  Sum_probs=26.6

Q ss_pred             ccCceeEEEccCCCEEEEeCCCCEEEEe
Q psy15750         77 FYMPHGCTVDNKGFIWLTDVALHQVFKT  104 (115)
Q Consensus        77 f~~P~Gi~vd~~g~I~VtD~~~h~V~~f  104 (115)
                      |..|+|+++|++|+|||+|.++|+|++|
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            5789999999999999999999999987

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type

Probab=99.06  E-value=2.4e-11  Score=87.72  Aligned_cols=89  Identities=12%  Similarity=0.177  Sum_probs=68.1

Q ss_pred             eeeeeEEEEEecceeeEEEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecCCCccCce
Q psy15750          2 LVGIPIGITFCDSIGYVARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPH   81 (115)
Q Consensus         2 ~~~~~~~~~~~d~v~~~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~   81 (115)
                      ++++.+++.+..++++..+|+|.||.||++.++     +...+++.++..++++++|++|.. +++--..+.|+...+| 
T Consensus         6 ~~~~~~~~~i~~~~~~~~~v~g~SM~Ptl~~Gd-----~vlv~k~~~~~~~~~rGDiVvf~~-~~~~~~~~iKRVig~p-   78 (163)
T TIGR02227         6 LIAILLALLIRTFVFFPYKIPGGSMEPTLKEGD-----RILVNKFAYGTSDPKRGDIVVFKD-PDDNKNIYVKRVIGLP-   78 (163)
T ss_pred             HHHHHHHHHHHhhEEEEEEECCcccccchhCCC-----EEEEEEeEcCCCCCCCCcEEEEec-CCCCCceeEEEEEecC-
Confidence            345566678889999999999999999999998     667788777788999999999976 3332234455666677 


Q ss_pred             eEEEc-cCCCEEEEeCC
Q psy15750         82 GCTVD-NKGFIWLTDVA   97 (115)
Q Consensus        82 Gi~vd-~~g~I~VtD~~   97 (115)
                      |.++. .+|.+||++..
T Consensus        79 Gd~v~i~~~~l~vNg~~   95 (163)
T TIGR02227        79 GDKVEFRDGKLYINGKK   95 (163)
T ss_pred             CCEEEEECCEEEECCEE
Confidence            77776 67778876543

A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.

>PRK10861 signal peptidase I; Provisional

Probab=99.00  E-value=7.5e-11  Score=93.96  Aligned_cols=88  Identities=11%  Similarity=-0.054  Sum_probs=71.5

Q ss_pred             eeeeEEEEEecceeeEEEeeeeecCccCCCCcccceEEeecccccCCC------------CCCCCCeEEEEeCCCCeEEe
Q psy15750          3 VGIPIGITFCDSIGYVARVDGTSMQPVCPSTYMDTLYCSIEESESGTK------------RPISVDTVLTLDKSTGLLID   70 (115)
Q Consensus         3 ~~~~~~~~~~d~v~~~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~------------~~i~~~~I~vfdp~~G~~l~   70 (115)
                      +++.+++++..++.+..+|+|.||.||++.++     +..+||++|..            +.+++++|+||.. ..+--.
T Consensus        69 ~~l~i~~~ir~fv~~~~~Ips~SM~PTL~~GD-----~IlVnK~~yg~~~p~~~~~~~~~~~p~RGDIVVF~~-P~~~~~  142 (324)
T PRK10861         69 PVLAIVLIVRSFIYEPFQIPSGSMMPTLLIGD-----FILVEKFAYGIKDPITQTTLIETGHPKRGDIVVFKY-PEDPKL  142 (324)
T ss_pred             HHHhHHHHHHhhEEEEEEECCCcCcCcccCCC-----EEEEEEeecCccCccccccccccCCCCCCCEEEEec-CCCCCC
Confidence            34566678899999999999999999999999     88888888753            6789999999964 333334


Q ss_pred             EecCCCccCceeEEEc-c--CCCEEEEeCC
Q psy15750         71 AWGKNKFYMPHGCTVD-N--KGFIWLTDVA   97 (115)
Q Consensus        71 ~~G~g~f~~P~Gi~vd-~--~g~I~VtD~~   97 (115)
                      .+.|+...+| |.+|. .  ++.+||++..
T Consensus       143 ~yIKRVIGlP-GD~I~~~~~~~~l~iNg~~  171 (324)
T PRK10861        143 DYIKRVVGLP-GDKVTYDPVSKEVTIQPGC  171 (324)
T ss_pred             cEEEEeeecC-CcEEEEEeCCCEEEEcCcc
Confidence            5788899999 98887 3  7999999753

>KOG0171|consensus

Probab=98.90  E-value=2.6e-10  Score=83.11  Aligned_cols=87  Identities=16%  Similarity=0.102  Sum_probs=62.0

Q ss_pred             EEEEEecceeeEEEeeeeecCccCCC-CcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecCCCccCc-----
Q psy15750          7 IGITFCDSIGYVARVDGTSMQPVCPS-TYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMP-----   80 (115)
Q Consensus         7 ~~~~~~d~v~~~~~v~G~Sm~pt~~~-~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P-----   80 (115)
                      +.++++.++|+++.++|.||.||++. ++     +...++.+++++-++.++|+++-. .-.....+.|+...+|     
T Consensus        24 f~h~t~~yl~e~~~~~gpSM~PTl~~~gd-----~l~aEkls~~f~~~~~gDIVi~~s-P~~~~~~~cKRIva~eGD~v~   97 (176)
T KOG0171|consen   24 FTHVTHEYLGEFVMCSGPSMEPTLHDGGD-----VLLAEKLSYRFRKPQVGDIVIAKS-PPDPKEHICKRIVAMEGDLVE   97 (176)
T ss_pred             HHHHHHHHhcceeeccCCCcCceecCCCc-----EEehhhhhHhhcCCCCCCEEEEeC-CCCchhhhhheeeccCCceEE
Confidence            34567789999999999999999975 55     555688899999889999999943 3444344444433333     


Q ss_pred             -----ee-----------EEEccCCCEEEE-eCCCCE
Q psy15750         81 -----HG-----------CTVDNKGFIWLT-DVALHQ  100 (115)
Q Consensus        81 -----~G-----------i~vd~~g~I~Vt-D~~~h~  100 (115)
                           ..           |.| |.|++||. |+.+|+
T Consensus        98 v~~~~~~~n~~~e~~~~~i~V-P~GhVfv~GDN~~nS  133 (176)
T KOG0171|consen   98 VHDGPLVVNDLVEKFSTPIRV-PEGHVFVEGDNRNNS  133 (176)
T ss_pred             EecCCcccchhhhhccceeec-cCceEEEecCCCCCc
Confidence                 11           233 78999999 777663

>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion]

Probab=98.19  E-value=1.1e-06  Score=62.06  Aligned_cols=52  Identities=13%  Similarity=0.049  Sum_probs=39.9

Q ss_pred             eeeeEEEEE--ecceeeEEEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEE
Q psy15750          3 VGIPIGITF--CDSIGYVARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVL   59 (115)
Q Consensus         3 ~~~~~~~~~--~d~v~~~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~   59 (115)
                      +++++++++  ..++.++..|+|.||+||++.+|     +...+++++....+....+.
T Consensus        16 ~~~~~~~~i~~~~~~~~~~~V~s~SM~Ptl~~GD-----~v~v~k~~~~~~~~~~~~~~   69 (166)
T COG0681          16 IAIILALIIGVRTFVFEPVVVPSGSMEPTLNVGD-----RVLVKKFSYGFGKLKVPDII   69 (166)
T ss_pred             HHHHHhheeeeEEEEEEEEEECCCccccccccCC-----EEEEEeccccccCCccceee
Confidence            345555666  89999999999999999999998     77788877776544444433

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.18  E-value=5.2e-06  Score=74.83  Aligned_cols=55  Identities=15%  Similarity=0.204  Sum_probs=44.7

Q ss_pred             CCeEEEEeCCCCeEEeEecCC------------CccCceeEEEccCCCEEEEeCCCCEEEEeCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKN------------KFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYN  109 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g------------~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~  109 (115)
                      +++|.+||++++.+....|.|            +|..|+|++++++|++||+|..+|+|.+++.+..
T Consensus       824 N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        824 NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            489999999555555444432            5779999999999999999999999999998653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.04  E-value=1.2e-05  Score=72.59  Aligned_cols=55  Identities=18%  Similarity=0.327  Sum_probs=45.8

Q ss_pred             CCCCeEEEEeCCCCeEEeEecC-------------CCccCceeEEEccCCC-EEEEeCCCCEEEEeCCCC
Q psy15750         53 ISVDTVLTLDKSTGLLIDAWGK-------------NKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        53 i~~~~I~vfdp~~G~~l~~~G~-------------g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G  108 (115)
                      ..++.|.++|+ +|+++..+|.             ..|..|+|+++|++|+ |||+|..+|+|.+++..+
T Consensus       587 s~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~  655 (1057)
T PLN02919        587 SNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVN  655 (1057)
T ss_pred             CCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCC
Confidence            34589999999 8998877764             2478899999998765 899999999999998654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.93  E-value=1.5e-05  Score=59.55  Aligned_cols=56  Identities=18%  Similarity=0.213  Sum_probs=40.3

Q ss_pred             CeEEEEeCC-CCe-EE--eEec--CCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         56 DTVLTLDKS-TGL-LI--DAWG--KNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        56 ~~I~vfdp~-~G~-~l--~~~G--~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      +.|..|+.. ++. +.  +.+.  ......|-|+++|++|+|||++...++|++|+++|+.-
T Consensus       156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~  217 (246)
T PF08450_consen  156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLL  217 (246)
T ss_dssp             TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEE
T ss_pred             ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEE
Confidence            678888652 232 22  2232  22335799999999999999999999999999999853

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease

Probab=97.54  E-value=0.00035  Score=45.20  Aligned_cols=39  Identities=26%  Similarity=0.244  Sum_probs=27.2

Q ss_pred             EEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEe
Q psy15750         19 ARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLD   62 (115)
Q Consensus        19 ~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfd   62 (115)
                      ++|+|.||.||+++++     .-.++........+.++++++|.
T Consensus         1 ~~V~g~SM~P~l~~GD-----~vlv~~~~~~~~~~~~Gdivv~~   39 (90)
T TIGR02754         1 AKVTGVSMSPTLPPGD-----RIIVVPWLKIFRVPPIGNVVVVR   39 (90)
T ss_pred             CEeeCCCccCccCCCC-----EEEEEEccccCCCCCCCeEEEEe
Confidence            4799999999999986     33444432334555568888884

Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.33  E-value=0.0011  Score=49.57  Aligned_cols=50  Identities=14%  Similarity=0.283  Sum_probs=41.0

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G  108 (115)
                      +.+..+++ +|+.....  ..+..|.||+++++|+ +||+|...++|++|+.+.
T Consensus       115 g~v~~~~~-~~~~~~~~--~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~  165 (246)
T PF08450_consen  115 GSVYRIDP-DGKVTVVA--DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA  165 (246)
T ss_dssp             EEEEEEET-TSEEEEEE--EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred             cceEEECC-CCeEEEEe--cCcccccceEECCcchheeecccccceeEEEeccc
Confidence            78999999 67754332  2488999999999885 899999999999999863

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

Probab=97.09  E-value=0.0018  Score=41.19  Aligned_cols=41  Identities=20%  Similarity=0.109  Sum_probs=31.8

Q ss_pred             EEEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeC
Q psy15750         18 VARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDK   63 (115)
Q Consensus        18 ~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp   63 (115)
                      +.+|+|.||.||++.++     +...++.....+.++.+++++|..
T Consensus         2 ~~~v~g~SM~P~i~~gd-----~v~v~~~~~~~~~~~~GDiv~~~~   42 (85)
T cd06530           2 PVVVPGGSMEPTLQPGD-----LVLVNKLSYGFREPKRGDVVVFKS   42 (85)
T ss_pred             eeEEcCCCCcCcccCCC-----EEEEEEeecccCCCCCCCEEEEeC
Confidence            57899999999999987     555555333345788899999976

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.82  E-value=0.0054  Score=47.36  Aligned_cols=47  Identities=17%  Similarity=0.417  Sum_probs=29.7

Q ss_pred             CeEEEEeCCCCeEEeEec--C------CCccCceeEEEccCCCEEEEeCCCCEEEEe
Q psy15750         56 DTVLTLDKSTGLLIDAWG--K------NKFYMPHGCTVDNKGFIWLTDVALHQVFKT  104 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G--~------g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f  104 (115)
                      ..++++|+ +|+++..+-  +      ..|.-|-|||.|++|++||+...| ..|+|
T Consensus       193 ~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN-lfy~f  247 (248)
T PF06977_consen  193 RLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN-LFYRF  247 (248)
T ss_dssp             TEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT-EEEEE
T ss_pred             CeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc-eEEEe
Confidence            68888998 899876654  2      357789999999999999997654 67776

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=96.69  E-value=0.0072  Score=39.96  Aligned_cols=52  Identities=13%  Similarity=0.181  Sum_probs=39.8

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G  108 (115)
                      .+.++.+||++++...  -...+.+|.|+++.+|+. +.|+....+||.||=-+|
T Consensus        36 ~GRll~ydp~t~~~~v--l~~~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~G   88 (89)
T PF03088_consen   36 TGRLLRYDPSTKETTV--LLDGLYFPNGVALSPDESFVLVAETGRYRILRYWLKG   88 (89)
T ss_dssp             -EEEEEEETTTTEEEE--EEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred             CcCEEEEECCCCeEEE--ehhCCCccCeEEEcCCCCEEEEEeccCceEEEEEEeC
Confidence            4889999997776411  112488999999998886 889999999999987665

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification

Probab=96.65  E-value=0.0021  Score=39.14  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=25.5

Q ss_pred             EeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCe
Q psy15750         20 RVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGL   67 (115)
Q Consensus        20 ~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~   67 (115)
                      +|+|-||.|+++.++     ....++    ...+..++++++.. +++
T Consensus         1 ~V~GdSM~P~i~~Gd-----~v~v~~----~~~~~~gdivv~~~-~~~   38 (70)
T PF00717_consen    1 RVEGDSMEPTIKDGD-----IVLVDP----SSEPKDGDIVVVKI-DGD   38 (70)
T ss_dssp             EEESSTTGGTSSTTE-----EEEEEE----TS---TTSEEEEEE-TTE
T ss_pred             CeECcCcccCeeCCC-----EEEEEE----cCCCccCeEEEEEE-CCc
Confidence            689999999999887     333333    22677788888866 455

; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....

>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type

Probab=96.56  E-value=0.0044  Score=44.87  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=29.2

Q ss_pred             EeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeC
Q psy15750         20 RVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDK   63 (115)
Q Consensus        20 ~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp   63 (115)
                      -|.|.||+||++.++     +...++  ...+.+++++|++|..
T Consensus        35 ~V~g~SM~Ptl~~GD-----~vlv~~--~~~~~~~~GDIVvf~~   71 (158)
T TIGR02228        35 VVLSGSMEPTFNTGD-----LILVTG--ADPNDIQVGDVITYKS   71 (158)
T ss_pred             EEcCCCCcCCccCCC-----EEEEEe--cccCCCCCCCEEEEEE
Confidence            399999999999996     444554  3446889999999965

This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.

>KOG3567|consensus

Probab=96.44  E-value=0.00066  Score=56.63  Aligned_cols=58  Identities=17%  Similarity=0.051  Sum_probs=46.7

Q ss_pred             CCCCCCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750         49 TKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        49 ~~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~  107 (115)
                      .+++|+...+.-..++.|+.- .|+...|++|||.++|.+|+.|+||++.|+++|+.|.
T Consensus       140 ar~ap~l~lp~~V~f~vG~~q-~iky~vlqvhyg~t~df~~~~d~TgV~mH~t~kp~pk  197 (501)
T KOG3567|consen  140 ARGAPNLKLPKGVGFRVGGEQ-GIKYFVLQVHYGLTIDFDGNYDVTGVGMHQTEKPQPK  197 (501)
T ss_pred             hhCCCcccchhhhcccccccc-CcceeEEEeccccccCCCCCcccccceeeeeccCCch
Confidence            355666666655555456554 7888899999999999999999999999999998775

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.28  E-value=0.012  Score=46.95  Aligned_cols=54  Identities=26%  Similarity=0.317  Sum_probs=41.4

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCC-CCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPY-TYNFG  111 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~-~G~f~  111 (115)
                      +.|=.+||++|+..+. --+.=..||||.+++||+.||+|.++ -|-++++ .+++.
T Consensus        83 gaiGhLdP~tGev~~y-pLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt  137 (353)
T COG4257          83 GAIGHLDPATGEVETY-PLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT  137 (353)
T ss_pred             ccceecCCCCCceEEE-ecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE
Confidence            6677889988887543 33344589999999999999999997 7777777 34443

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=96.17  E-value=0.012  Score=32.80  Aligned_cols=29  Identities=24%  Similarity=0.297  Sum_probs=21.4

Q ss_pred             eEecCC-CccCceeEEEccCCCEEEEeCCC
Q psy15750         70 DAWGKN-KFYMPHGCTVDNKGFIWLTDVAL   98 (115)
Q Consensus        70 ~~~G~g-~f~~P~Gi~vd~~g~I~VtD~~~   98 (115)
                      +.+|.. .-..|++|++|++|||||+...+
T Consensus         4 ~~lG~~~~~~~~~~IavD~~GNiYv~G~T~   33 (38)
T PF06739_consen    4 TQLGGPGAQDYGNGIAVDSNGNIYVTGYTN   33 (38)
T ss_pred             EEeCCCCCceeEEEEEECCCCCEEEEEeec
Confidence            455533 33479999999999999996544

SBBP stands for Seven Bladed Beta Propeller.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=96.16  E-value=0.022  Score=37.38  Aligned_cols=49  Identities=10%  Similarity=0.184  Sum_probs=37.4

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccC-CCEEEEeCCCCEEEEeCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNK-GFIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~-g~I~VtD~~~h~V~~f~~~  107 (115)
                      .+.|+-+|+  ++.  +.-...+..|.||+++++ ..|||++...|.|++|...
T Consensus        35 ~~~Vvyyd~--~~~--~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   35 WGNVVYYDG--KEV--KVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             CceEEEEeC--CEe--EEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            367888888  332  223346889999999974 7889999999999988653

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=96.04  E-value=0.027  Score=30.50  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=30.7

Q ss_pred             CccCceeEEEcc-CCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         76 KFYMPHGCTVDN-KGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        76 ~f~~P~Gi~vd~-~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      .+..|.|+++|+ ++.+|-+|...+.+.+.+.+|..
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~   42 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN   42 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence            577899999995 57899999999999999998864

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.80  E-value=0.031  Score=44.73  Aligned_cols=46  Identities=17%  Similarity=0.230  Sum_probs=37.3

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEE
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVF  102 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~  102 (115)
                      .+.|+.|+| +|..+..+..+ +..|.|++.|++|++|++|+..+...
T Consensus       163 ~g~i~r~~p-dg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~~~~~  208 (367)
T TIGR02604       163 GGGLFRYNP-DGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDNDDPPLC  208 (367)
T ss_pred             CceEEEEec-CCCeEEEEecC-cCCCccceECCCCCEEEEccCCCcee
Confidence            367999999 67666666655 88999999999999999999765444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.48  E-value=0.033  Score=44.25  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=27.9

Q ss_pred             cCceeEEEccCCCEEEEeCCC-CEEEEeCCCCCC
Q psy15750         78 YMPHGCTVDNKGFIWLTDVAL-HQVFKTPYTYNF  110 (115)
Q Consensus        78 ~~P~Gi~vd~~g~I~VtD~~~-h~V~~f~~~G~f  110 (115)
                      .+|-|+++|.+|++|++-... ..|.+|+|+|+.
T Consensus       213 G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l  246 (307)
T COG3386         213 GLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKL  246 (307)
T ss_pred             CCCCceEEeCCCCEEEecccCCceEEEECCCCcE
Confidence            589999999999999764444 499999999875

>KOG4499|consensus

Probab=95.28  E-value=0.049  Score=42.72  Aligned_cols=34  Identities=24%  Similarity=0.280  Sum_probs=30.0

Q ss_pred             CccCceeEEEccCCCEEEEeCCCCEEEEeCCC-CC
Q psy15750         76 KFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT-YN  109 (115)
Q Consensus        76 ~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~-G~  109 (115)
                      .-..|-|+++|.+|++||+=....+|+++||. |+
T Consensus       210 e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK  244 (310)
T KOG4499|consen  210 ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK  244 (310)
T ss_pred             CCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc
Confidence            34589999999999999999999999999985 44

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=95.16  E-value=0.039  Score=44.47  Aligned_cols=48  Identities=19%  Similarity=0.317  Sum_probs=39.2

Q ss_pred             EeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCC-CCCCcc
Q psy15750         61 LDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT-YNFGDM  113 (115)
Q Consensus        61 fdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~-G~f~~~  113 (115)
                      .|-++++++.+    -+.|||+-.- .+|.+|+.|.+.+++.+.|++ |++.++
T Consensus       190 idv~s~evl~~----GLsmPhSPRW-hdgrLwvldsgtGev~~vD~~~G~~e~V  238 (335)
T TIGR03032       190 IDIPSGEVVAS----GLSMPHSPRW-YQGKLWLLNSGRGELGYVDPQAGKFQPV  238 (335)
T ss_pred             EEeCCCCEEEc----CccCCcCCcE-eCCeEEEEECCCCEEEEEcCCCCcEEEE
Confidence            44446666665    5889998877 789999999999999999997 988765

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.05  E-value=0.1  Score=41.48  Aligned_cols=54  Identities=11%  Similarity=0.343  Sum_probs=44.0

Q ss_pred             CCCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCC-CEEEEeCCCCEEEEeCCC
Q psy15750         52 PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKG-FIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        52 ~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g-~I~VtD~~~h~V~~f~~~  107 (115)
                      +-..+.+..+|| .|...+-+ .+.+..|.|++.++|| .+|++|....++++|+-+
T Consensus       139 ~~~~G~lyr~~p-~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         139 ERPTGSLYRVDP-DGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             cCCcceEEEEcC-CCCEEEee-cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            344568999999 77776553 3458899999999999 889999999999999776

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.79  E-value=0.17  Score=40.81  Aligned_cols=53  Identities=23%  Similarity=0.269  Sum_probs=43.3

Q ss_pred             CCCeEEEEeCCCCeEEeEecC-CCccCceeEEEccCCC-EEEEeCCCCEEEEeCCCCC
Q psy15750         54 SVDTVLTLDKSTGLLIDAWGK-NKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTYN  109 (115)
Q Consensus        54 ~~~~I~vfdp~~G~~l~~~G~-g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G~  109 (115)
                      ..+.+.++|+.++++..+ .. |.  .|.|++++++|+ +||+|.....+..++.++.
T Consensus       138 ~~~~vsvid~~t~~~~~~-~~vG~--~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~  192 (381)
T COG3391         138 GNNTVSVIDAATNKVTAT-IPVGN--TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGN  192 (381)
T ss_pred             CCceEEEEeCCCCeEEEE-EecCC--CcceEEECCCCCeEEEEecCCCeEEEEeCCCc
Confidence            358899999967777766 43 33  789999999998 9999999999999987765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=94.41  E-value=0.84  Score=36.02  Aligned_cols=92  Identities=12%  Similarity=0.045  Sum_probs=54.6

Q ss_pred             eeeEEEeeeeecCccCCCCc--ccceEEeecccccC--CCCCCCCCeEEEEe--CCCCeEEeE-ecCCCccCceeEEEcc
Q psy15750         15 IGYVARVDGTSMQPVCPSTY--MDTLYCSIEESESG--TKRPISVDTVLTLD--KSTGLLIDA-WGKNKFYMPHGCTVDN   87 (115)
Q Consensus        15 v~~~~~v~G~Sm~pt~~~~~--~D~~~~~~~~~~~~--~~~~i~~~~I~vfd--p~~G~~l~~-~G~g~f~~P~Gi~vd~   87 (115)
                      -|.+..+...+.-|....+.  .-.+..+-+++|.|  +++   .+.|.+|+  +++|++..- ...-.-..|+++++++
T Consensus       225 ~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~---~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~  301 (345)
T PF10282_consen  225 DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG---SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP  301 (345)
T ss_dssp             TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT---TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T
T ss_pred             CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc---CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC
Confidence            34666777777776643221  22233455666655  333   47888995  445665321 1111123599999998


Q ss_pred             CCC-EEEEeCCCCEEEEeCCCCC
Q psy15750         88 KGF-IWLTDVALHQVFKTPYTYN  109 (115)
Q Consensus        88 ~g~-I~VtD~~~h~V~~f~~~G~  109 (115)
                      +|+ +||++...++|..|+.+.+
T Consensus       302 ~g~~l~Va~~~s~~v~vf~~d~~  324 (345)
T PF10282_consen  302 DGRYLYVANQDSNTVSVFDIDPD  324 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCCEEEEEecCCCeEEEEEEeCC
Confidence            876 7889999999988865433

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>cd06462 Peptidase_S24_S26 The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

Probab=94.30  E-value=0.19  Score=30.96  Aligned_cols=43  Identities=21%  Similarity=0.336  Sum_probs=28.7

Q ss_pred             EEEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCC-eEE
Q psy15750         18 VARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTG-LLI   69 (115)
Q Consensus        18 ~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G-~~l   69 (115)
                      ..+|+|-||.|+++.++     ....+.   ....+..+++.++.. ++ +..
T Consensus         2 ~~~v~g~SM~P~i~~gd-----~v~i~~---~~~~~~~G~iv~~~~-~~~~~~   45 (84)
T cd06462           2 ALRVEGDSMEPTIPDGD-----LVLVDK---SSYEPKRGDIVVFRL-PGGELT   45 (84)
T ss_pred             eeEEcCCCccCcccCCC-----EEEEEe---cCCCCcCCEEEEEEc-CCCcEE
Confidence            46899999999999887     333332   111466788888876 45 443

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the tr

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.26  E-value=0.091  Score=41.13  Aligned_cols=66  Identities=18%  Similarity=0.441  Sum_probs=41.0

Q ss_pred             EEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEE----eE--ecCCCccCceeEEEcc--CCC
Q psy15750         19 ARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLI----DA--WGKNKFYMPHGCTVDN--KGF   90 (115)
Q Consensus        19 ~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l----~~--~G~g~f~~P~Gi~vd~--~g~   90 (115)
                      .+..|.+|+++.+.+-.|                +.++.|..+++ ++.+.    ..  --.+.+..|.++++++  +|.
T Consensus       186 ~~s~g~~~D~~G~ly~~~----------------~~~~aI~~w~~-~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~  248 (287)
T PF03022_consen  186 SQSDGMAIDPNGNLYFTD----------------VEQNAIGCWDP-DGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY  248 (287)
T ss_dssp             -SECEEEEETTTEEEEEE----------------CCCTEEEEEET-TTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-
T ss_pred             CCCceEEECCCCcEEEec----------------CCCCeEEEEeC-CCCcCccchheeEEcCceeeccceeeeccccCce
Confidence            366778888866665433                34489999998 77321    11  1234599999999999  999


Q ss_pred             EEEEeCCCCEE
Q psy15750         91 IWLTDVALHQV  101 (115)
Q Consensus        91 I~VtD~~~h~V  101 (115)
                      +||.-+..|+.
T Consensus       249 L~v~snrl~~~  259 (287)
T PF03022_consen  249 LWVLSNRLQRF  259 (287)
T ss_dssp             EEEEE-S--SS
T ss_pred             EEEEECcchHh
Confidence            99986666643

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.16  E-value=0.19  Score=40.52  Aligned_cols=52  Identities=21%  Similarity=0.328  Sum_probs=39.8

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCC-CEEEEeC--CCCEEEEeCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKG-FIWLTDV--ALHQVFKTPYTYN  109 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g-~I~VtD~--~~h~V~~f~~~G~  109 (115)
                      +.|.++|..+-+.......|.  +|+++++++++ ++||+|.  .++.+.++|+...
T Consensus        96 ~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~  150 (381)
T COG3391          96 NTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN  150 (381)
T ss_pred             CeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence            778888853445555555555  99999999876 9999999  4799998888754

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.15  E-value=0.2  Score=40.32  Aligned_cols=55  Identities=11%  Similarity=0.116  Sum_probs=48.1

Q ss_pred             CCeEEEEeCCCCeEEeEecC-CCccCceeEEEcc------CCCEEEEeCCCCEEEEeCCC-CCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGK-NKFYMPHGCTVDN------KGFIWLTDVALHQVFKTPYT-YNF  110 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~-g~f~~P~Gi~vd~------~g~I~VtD~~~h~V~~f~~~-G~f  110 (115)
                      .+-|-+||+ +|++++++-. +.+..|.|+++-|      .|.|.|...+..+|-.||+. |+|
T Consensus       221 ~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~  283 (336)
T TIGR03118       221 LGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ  283 (336)
T ss_pred             cceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCce
Confidence            468999999 9999999864 6799999999965      58999999999999999985 665

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.92  E-value=0.13  Score=40.55  Aligned_cols=32  Identities=16%  Similarity=0.292  Sum_probs=29.8

Q ss_pred             CceeEEEccCCCEEEEeCCC------CEEEEeCCCCCC
Q psy15750         79 MPHGCTVDNKGFIWLTDVAL------HQVFKTPYTYNF  110 (115)
Q Consensus        79 ~P~Gi~vd~~g~I~VtD~~~------h~V~~f~~~G~f  110 (115)
                      =|.||++.++|.+||++.+.      |+|++|+++|+.
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~  123 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRV  123 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcc
Confidence            57799999999999999999      999999999887

>COG2932 Predicted transcriptional regulator [Transcription]

Probab=92.29  E-value=1.2  Score=32.96  Aligned_cols=43  Identities=23%  Similarity=0.277  Sum_probs=28.2

Q ss_pred             eEEEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeE
Q psy15750         17 YVARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLL   68 (115)
Q Consensus        17 ~~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~   68 (115)
                      ...+|+|-||.|+++.++     ...++.   ....++.+.++++.- .|++
T Consensus       124 ~~i~V~GDSMeP~~~~Gd-----~ilVd~---~~~~~~gd~v~v~~~-g~~~  166 (214)
T COG2932         124 FALRVTGDSMEPTYEDGD-----TLLVDP---GVNTRRGDRVYVETD-GGEL  166 (214)
T ss_pred             EEEEEeCCcccccccCCC-----EEEECC---CCceeeCCEEEEEEe-CCeE
Confidence            678999999999999998     333333   333444455666654 4443

>cd06529 S24_LexA-like Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell

Probab=92.28  E-value=0.62  Score=28.61  Aligned_cols=40  Identities=20%  Similarity=0.286  Sum_probs=26.8

Q ss_pred             EEEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCe
Q psy15750         18 VARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGL   67 (115)
Q Consensus        18 ~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~   67 (115)
                      ..+++|.||.|+++.++  .+.   .+.    ...+..+++.++.- +++
T Consensus         2 ~~~v~g~sM~p~i~~gd--~li---i~~----~~~~~~g~i~~~~~-~~~   41 (81)
T cd06529           2 ALRVKGDSMEPTIPDGD--LVL---VDP----SDTPRDGDIVVARL-DGE   41 (81)
T ss_pred             EEEEECCCcCCccCCCC--EEE---EcC----CCCCCCCCEEEEEE-CCE
Confidence            46899999999998886  333   332    22366777777765 443

This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.19  E-value=0.24  Score=39.58  Aligned_cols=39  Identities=10%  Similarity=0.246  Sum_probs=29.7

Q ss_pred             CccCceeEEEccCCCEEEEeCC------------CCEEEEeCC---CCCCCccc
Q psy15750         76 KFYMPHGCTVDNKGFIWLTDVA------------LHQVFKTPY---TYNFGDMT  114 (115)
Q Consensus        76 ~f~~P~Gi~vd~~g~I~VtD~~------------~h~V~~f~~---~G~f~~~~  114 (115)
                      .+..|.+|++|++|++||++..            ..+|++++.   +|++...|
T Consensus        12 ~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~   65 (367)
T TIGR02604        12 LLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSN   65 (367)
T ss_pred             ccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeE
Confidence            5778999999999999999753            248887765   57765443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=91.98  E-value=1.1  Score=34.57  Aligned_cols=50  Identities=14%  Similarity=0.116  Sum_probs=38.9

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPY  106 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~  106 (115)
                      +.|+.++. +|++++++--..|.=|.||+.-.+|.+.+++...+++++++.
T Consensus        44 ~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   44 GEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             TEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            77889998 999999976556888999999988988899988999987765

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=91.07  E-value=0.36  Score=37.78  Aligned_cols=33  Identities=18%  Similarity=0.238  Sum_probs=29.2

Q ss_pred             ceeEEEccCCCEEEEeCCCCEEEEeCCCCCCCc
Q psy15750         80 PHGCTVDNKGFIWLTDVALHQVFKTPYTYNFGD  112 (115)
Q Consensus        80 P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f~~  112 (115)
                      --|+++|++|++|.+|...+.|.++++++.+.+
T Consensus       188 s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~  220 (287)
T PF03022_consen  188 SDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTP  220 (287)
T ss_dssp             ECEEEEETTTEEEEEECCCTEEEEEETTTSB-G
T ss_pred             CceEEECCCCcEEEecCCCCeEEEEeCCCCcCc
Confidence            358999999999999999999999999996654

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.79  E-value=1.2  Score=35.76  Aligned_cols=31  Identities=10%  Similarity=0.298  Sum_probs=23.5

Q ss_pred             CccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750         76 KFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        76 ~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~  107 (115)
                      .+.-|.|++.|.+|+|||+-.- .--|+|.++
T Consensus       282 dipqaEGiamDd~g~lYIvSEP-nlfy~F~~~  312 (316)
T COG3204         282 DIPQAEGIAMDDDGNLYIVSEP-NLFYRFTPQ  312 (316)
T ss_pred             cCCCcceeEECCCCCEEEEecC-CcceecccC
Confidence            4667899999999999998433 345677665

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.30  E-value=1.2  Score=37.42  Aligned_cols=52  Identities=19%  Similarity=0.324  Sum_probs=38.0

Q ss_pred             CCeEEEEeCCCCeE-------------EeEecCCCccCceeEEEccCCCEEEEeCCC---CEEEEeCCCCCC
Q psy15750         55 VDTVLTLDKSTGLL-------------IDAWGKNKFYMPHGCTVDNKGFIWLTDVAL---HQVFKTPYTYNF  110 (115)
Q Consensus        55 ~~~I~vfdp~~G~~-------------l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~---h~V~~f~~~G~f  110 (115)
                      .+.|+.+++ +|+.             +-++|   +.-|.|++.|++|.+|++|.+-   .++-+..+-+++
T Consensus       198 ~GkILRin~-DGsiP~dNPf~~g~~~eIyA~G---~RNp~Gla~dp~G~Lw~~e~Gp~~~DEiN~I~~G~NY  265 (454)
T TIGR03606       198 MGKVLRLNL-DGSIPKDNPSINGVVSHIFTYG---HRNPQGLAFTPDGTLYASEQGPNSDDELNIIVKGGNY  265 (454)
T ss_pred             ceEEEEEcC-CCCCCCCCCccCCCcceEEEEe---ccccceeEECCCCCEEEEecCCCCCcEEEEeccCCcC
Confidence            568999998 8863             34555   3479999999999999999884   455554444444

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=89.81  E-value=2.5  Score=30.87  Aligned_cols=50  Identities=14%  Similarity=0.232  Sum_probs=37.7

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      +.+.++|+++++.+..+-.+  ..|++++.+++|. +|++....+++..++.+
T Consensus        11 ~~v~~~d~~t~~~~~~~~~~--~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~   61 (300)
T TIGR03866        11 NTISVIDTATLEVTRTFPVG--QRPRGITLSKDGKLLYVCASDSDTIQVIDLA   61 (300)
T ss_pred             CEEEEEECCCCceEEEEECC--CCCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence            68889998778877776422  2477889988886 57887777888888865

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=89.25  E-value=1.5  Score=31.59  Aligned_cols=55  Identities=16%  Similarity=0.167  Sum_probs=40.1

Q ss_pred             CCeEEEEeCCCCeEEeEecCCC-ccCceeEEEccCCCEEEEeCCCCEEEEeCC-CCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNK-FYMPHGCTVDNKGFIWLTDVALHQVFKTPY-TYNF  110 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~-f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~-~G~f  110 (115)
                      ++.|..+|+.+|+.+-+..-+. +.-+...++..++++|+.+ ..++++.+|. +|+.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~l~~~d~~tG~~   58 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS-GDGNLYALDAKTGKV   58 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE-TTSEEEEEETTTSEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc-CCCEEEEEECCCCCE
Confidence            4678999998999987775422 4444333666789999994 7888999986 6753

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=87.99  E-value=0.81  Score=36.10  Aligned_cols=34  Identities=15%  Similarity=0.238  Sum_probs=27.1

Q ss_pred             ccCceeEEEccCCC-EEEEeCCCCEEEEeCCCCCC
Q psy15750         77 FYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        77 f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G~f  110 (115)
                      -..||.+..+++|+ +||+|.+..+|+.|+.+.+-
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~  177 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT  177 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred             cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence            45899999999875 89999999999988876544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1214|consensus

Probab=87.95  E-value=0.66  Score=42.07  Aligned_cols=54  Identities=15%  Similarity=0.066  Sum_probs=36.5

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCCCCEEE--EeCCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVALHQVF--KTPYTYNF  110 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~h~V~--~f~~~G~f  110 (115)
                      ++|-|-.. +|+..+..-...+.-|.+|.+|+ .||+|-||+.+..-+  .-+.||+-
T Consensus      1090 D~IevA~L-dG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~N 1146 (1289)
T KOG1214|consen 1090 DKIEVALL-DGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGEN 1146 (1289)
T ss_pred             chhheeec-CCceeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCcc
Confidence            34444444 57666655555688999999995 899999999854333  44455553

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=86.74  E-value=3.6  Score=33.41  Aligned_cols=50  Identities=8%  Similarity=0.070  Sum_probs=37.9

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC--EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF--IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~--I~VtD~~~h~V~~f~~~  107 (115)
                      +.|-++|.++++.+.++--|.  .|+++++.+||.  +|+++.....|..+|..
T Consensus       279 ~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~  330 (352)
T TIGR02658       279 RFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAE  330 (352)
T ss_pred             CEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence            579999998899888755333  799999998875  67777666667766653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=86.05  E-value=2  Score=34.55  Aligned_cols=55  Identities=13%  Similarity=0.139  Sum_probs=39.8

Q ss_pred             CCCCeEEEEeCCCCeEEeEec-CCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCC
Q psy15750         53 ISVDTVLTLDKSTGLLIDAWG-KNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        53 i~~~~I~vfdp~~G~~l~~~G-~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G  108 (115)
                      ...+.+..||| .-+.-.+|- .+.=.-|-.+.||..|.||.+|.+...+.+||++-
T Consensus       251 wg~g~l~rfdP-s~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpet  306 (353)
T COG4257         251 WGTGSLHRFDP-SVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             cCCceeeEeCc-ccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence            33478888998 444333333 12233566789999999999999999999999863

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=85.85  E-value=1.8  Score=24.21  Aligned_cols=30  Identities=17%  Similarity=0.149  Sum_probs=25.7

Q ss_pred             eEEEEeCCCCeEEeEecCCCccCceeEEEcc
Q psy15750         57 TVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN   87 (115)
Q Consensus        57 ~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~   87 (115)
                      .|..-+. +|+-.+......+..|.|||||+
T Consensus        13 ~I~~a~~-dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen   13 SIERANL-DGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             EEEEEET-TSTSEEEEEESSTSSEEEEEEET
T ss_pred             EEEEEEC-CCCCeEEEEECCCCCcCEEEECC
Confidence            7888888 88887788888899999999984

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=85.67  E-value=3.5  Score=33.49  Aligned_cols=49  Identities=18%  Similarity=0.199  Sum_probs=39.5

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCC-CEEEEeC---------CCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKG-FIWLTDV---------ALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g-~I~VtD~---------~~h~V~~f~~~  107 (115)
                      +.|.|+|.++++++..+--|.  .|||+ +.+|| .+||+..         ..+.|.++|..
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~   85 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ   85 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence            789999998899887766553  79997 88765 6899988         77888888765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=85.64  E-value=1.1  Score=22.18  Aligned_cols=14  Identities=21%  Similarity=0.515  Sum_probs=11.4

Q ss_pred             eeEEEccCCCEEEE
Q psy15750         81 HGCTVDNKGFIWLT   94 (115)
Q Consensus        81 ~Gi~vd~~g~I~Vt   94 (115)
                      ..+..|++|+|||.
T Consensus         8 ~~i~~D~~G~lWig   21 (24)
T PF07494_consen    8 YSIYEDSDGNLWIG   21 (24)
T ss_dssp             EEEEE-TTSCEEEE
T ss_pred             EEEEEcCCcCEEEE
Confidence            47889999999997

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG3342|consensus

Probab=85.47  E-value=2.2  Score=31.36  Aligned_cols=50  Identities=18%  Similarity=0.182  Sum_probs=36.3

Q ss_pred             EEecceeeEEEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCe
Q psy15750         10 TFCDSIGYVARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGL   67 (115)
Q Consensus        10 ~~~d~v~~~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~   67 (115)
                      +++++-..+.-|=..||+|.++-++     .....+  ++..+++-++|.||.- +|+
T Consensus        42 vvt~seSPiVVVLSgSMePaF~RGD-----lLfL~N--~~~~p~~vGdivVf~v-egR   91 (180)
T KOG3342|consen   42 VVTGSESPIVVVLSGSMEPAFHRGD-----LLFLTN--RNEDPIRVGDIVVFKV-EGR   91 (180)
T ss_pred             eeeCCCCCEEEEEcCCcCccccccc-----EEEEec--CCCCcceeccEEEEEE-CCc
Confidence            4455555667888899999999987     222222  4667888999999977 555

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=85.37  E-value=19  Score=29.45  Aligned_cols=98  Identities=11%  Similarity=0.110  Sum_probs=62.2

Q ss_pred             cceeeEEEeeeeecCccCCCCc--ccceEEeecccccC--CCCCCCCCeEEEE--eCCCCeEEeEec--CCCccCceeEE
Q psy15750         13 DSIGYVARVDGTSMQPVCPSTY--MDTLYCSIEESESG--TKRPISVDTVLTL--DKSTGLLIDAWG--KNKFYMPHGCT   84 (115)
Q Consensus        13 d~v~~~~~v~G~Sm~pt~~~~~--~D~~~~~~~~~~~~--~~~~i~~~~I~vf--dp~~G~~l~~~G--~g~f~~P~Gi~   84 (115)
                      ...|.+..+.-.++-|+.-.+.  .=+...+.+.+|+|  +++-   +.|.+|  |+ +|..|...+  .-.-..|++..
T Consensus       222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~---dsI~~f~V~~-~~g~L~~~~~~~teg~~PR~F~  297 (346)
T COG2706         222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH---DSIAVFSVDP-DGGKLELVGITPTEGQFPRDFN  297 (346)
T ss_pred             CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC---CeEEEEEEcC-CCCEEEEEEEeccCCcCCccce
Confidence            3468888888888888874433  33344567777777  3332   466676  88 544444444  22344699999


Q ss_pred             EccCCCE-EEEeCCCCEEEEeCCCCCCCccc
Q psy15750         85 VDNKGFI-WLTDVALHQVFKTPYTYNFGDMT  114 (115)
Q Consensus        85 vd~~g~I-~VtD~~~h~V~~f~~~G~f~~~~  114 (115)
                      +++.|++ +++....+.+-+|..+.+-+.+|
T Consensus       298 i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~  328 (346)
T COG2706         298 INPSGRFLIAANQKSDNITVFERDKETGRLT  328 (346)
T ss_pred             eCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence            9977665 55566666677777766655544

>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF

Probab=85.06  E-value=0.87  Score=33.20  Aligned_cols=46  Identities=11%  Similarity=0.138  Sum_probs=32.3

Q ss_pred             CCCCCCCCeEEEEeCCCCeEE-------------------eEecCCCccCceeEEEc-cCCCEEEEeC
Q psy15750         49 TKRPISVDTVLTLDKSTGLLI-------------------DAWGKNKFYMPHGCTVD-NKGFIWLTDV   96 (115)
Q Consensus        49 ~~~~i~~~~I~vfdp~~G~~l-------------------~~~G~g~f~~P~Gi~vd-~~g~I~VtD~   96 (115)
                      ..++++++++++|.+ ..+-.                   ..+.|+...+| |..|. .++.+||++.
T Consensus        43 ~~~~~~rGDiVvf~~-p~~~~~~~~~~rg~l~~g~~p~~~~~~vKRViglp-GD~V~i~~~~v~INg~  108 (171)
T TIGR02771        43 SSKPVERGDYVVFCP-PDNPQFEEARERGYLREGLCPGGFGPLLKRVLGLP-GDRVTVRADVVAINGQ  108 (171)
T ss_pred             CCCCCCCCcEEEEeC-CCchhhhchhhcCcccccccCcCccceEEEEEEeC-CCEEEEECCEEEECCE
Confidence            356899999999986 33211                   13456677788 88777 5778998863

This protein is found in apparent operons encoding elements of conjugative transfer systems. This family is homologous to a broader family of signal (leader) peptidases such as lepB. This family is present in both Ti-type and I-type conjugative systems.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=84.69  E-value=2.9  Score=33.08  Aligned_cols=55  Identities=24%  Similarity=0.423  Sum_probs=35.7

Q ss_pred             CCCCCeEEEEeCCCCeE---------------EeEecCCCccCceeEEEccC-CCEEEEeCCC---CEEEEeCCCCCC
Q psy15750         52 PISVDTVLTLDKSTGLL---------------IDAWGKNKFYMPHGCTVDNK-GFIWLTDVAL---HQVFKTPYTYNF  110 (115)
Q Consensus        52 ~i~~~~I~vfdp~~G~~---------------l~~~G~g~f~~P~Gi~vd~~-g~I~VtD~~~---h~V~~f~~~G~f  110 (115)
                      .-.++.|+.+++ +|+.               +-++|   +.-|.|++.|+. |++|++|++.   .++....+.+++
T Consensus       144 ~~~~G~ilri~~-dG~~p~dnP~~~~~~~~~~i~A~G---lRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nY  217 (331)
T PF07995_consen  144 NSLRGKILRIDP-DGSIPADNPFVGDDGADSEIYAYG---LRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNY  217 (331)
T ss_dssp             TSSTTEEEEEET-TSSB-TTSTTTTSTTSTTTEEEE-----SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B-
T ss_pred             ccccceEEEecc-cCcCCCCCccccCCCceEEEEEeC---CCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcC
Confidence            334789999998 8873               12222   557999999988 9999999874   455555554444

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02608 delta_60_rpt delta-60 repeat domain

Probab=84.58  E-value=2.1  Score=25.78  Aligned_cols=31  Identities=10%  Similarity=0.044  Sum_probs=23.4

Q ss_pred             eeEEEccCCCEEEEeCC-------CCEEEEeCCCCCCC
Q psy15750         81 HGCTVDNKGFIWLTDVA-------LHQVFKTPYTYNFG  111 (115)
Q Consensus        81 ~Gi~vd~~g~I~VtD~~-------~h~V~~f~~~G~f~  111 (115)
                      +.+++.+||.|.+....       ...+.+++++|...
T Consensus         4 ~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsLD   41 (55)
T TIGR02608         4 YAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSLD   41 (55)
T ss_pred             EEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCcc
Confidence            57889999999988532       23466999999764

This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.

>KOG1520|consensus

Probab=83.79  E-value=2  Score=35.34  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=19.9

Q ss_pred             CccCceeEEEccCCCEEEEeCCC
Q psy15750         76 KFYMPHGCTVDNKGFIWLTDVAL   98 (115)
Q Consensus        76 ~f~~P~Gi~vd~~g~I~VtD~~~   98 (115)
                      .+.+..++.|+++|.||-||...
T Consensus       159 ~~kf~N~ldI~~~g~vyFTDSSs  181 (376)
T KOG1520|consen  159 PFKFLNDLDIDPEGVVYFTDSSS  181 (376)
T ss_pred             eeeecCceeEcCCCeEEEecccc
Confidence            46677899999999999999874

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=83.29  E-value=1.9  Score=34.82  Aligned_cols=33  Identities=9%  Similarity=0.080  Sum_probs=30.0

Q ss_pred             CCccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750         75 NKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        75 g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~  107 (115)
                      ..+.-|.||+..+.+.+||+|++......|+-+
T Consensus        20 p~L~N~WGia~~p~~~~WVadngT~~~TlYdg~   52 (336)
T TIGR03118        20 PGLRNAWGLSYRPGGPFWVANTGTGTATLYVGN   52 (336)
T ss_pred             ccccccceeEecCCCCEEEecCCcceEEeecCC
Confidence            357789999999999999999999999999887

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=83.10  E-value=9.2  Score=27.80  Aligned_cols=52  Identities=12%  Similarity=-0.092  Sum_probs=34.0

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCE-EEEeCCCCEEEEeCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFI-WLTDVALHQVFKTPYTYN  109 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I-~VtD~~~h~V~~f~~~G~  109 (115)
                      +.+.++|.++++++...-.+  ..|.+++..++|.. |++......|.++|.+..
T Consensus       229 ~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~  281 (300)
T TIGR03866       229 NRVAVVDAKTYEVLDYLLVG--QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL  281 (300)
T ss_pred             CeEEEEECCCCcEEEEEEeC--CCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            45667776566665443222  25778899888864 556555778888888753

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK10276 DNA polymerase V subunit UmuD; Provisional

Probab=81.71  E-value=6.4  Score=27.29  Aligned_cols=43  Identities=19%  Similarity=0.172  Sum_probs=28.7

Q ss_pred             eEEEeeeeecC-ccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEE
Q psy15750         17 YVARVDGTSMQ-PVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLI   69 (115)
Q Consensus        17 ~~~~v~G~Sm~-pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l   69 (115)
                      ...+|+|-||. |+++.++     ....+.    ...++.++++++.. +|+..
T Consensus        52 f~l~V~GdSM~~~~I~~GD-----~liVd~----~~~~~~Gdivv~~~-~g~~~   95 (139)
T PRK10276         52 YFVKASGDSMIDAGISDGD-----LLIVDS----AITASHGDIVIAAV-DGEFT   95 (139)
T ss_pred             EEEEEecCCCCCCCCCCCC-----EEEEEC----CCCCCCCCEEEEEE-CCEEE
Confidence            45889999997 5788876     333332    22356688888876 67654

>KOG4659|consensus

Probab=81.56  E-value=2.8  Score=39.86  Aligned_cols=32  Identities=19%  Similarity=0.277  Sum_probs=25.4

Q ss_pred             CccCceeEEEccCCCEEEEeCCCCEEEEeCCCCC
Q psy15750         76 KFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYN  109 (115)
Q Consensus        76 ~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~  109 (115)
                      ++.+|+||++|++|++|.+|.-+  |-+-|.+|.
T Consensus       473 ~L~~PkGIa~dk~g~lYfaD~t~--IR~iD~~gi  504 (1899)
T KOG4659|consen  473 QLIFPKGIAFDKMGNLYFADGTR--IRVIDTTGI  504 (1899)
T ss_pred             eeccCCceeEccCCcEEEecccE--EEEeccCce
Confidence            68899999999999999998654  445555553

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=80.92  E-value=2.6  Score=27.70  Aligned_cols=28  Identities=18%  Similarity=0.335  Sum_probs=18.3

Q ss_pred             eEEEccC-CCEEEEeCCC-----------------CEEEEeCCCCC
Q psy15750         82 GCTVDNK-GFIWLTDVAL-----------------HQVFKTPYTYN  109 (115)
Q Consensus        82 Gi~vd~~-g~I~VtD~~~-----------------h~V~~f~~~G~  109 (115)
                      +++|+++ |.||.||...                 .++++|||..+
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~   47 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTK   47 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTT
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCC
Confidence            6789987 9999999853                 56777777654

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK13838 conjugal transfer pilin processing protease TraF; Provisional

Probab=80.91  E-value=1.5  Score=32.18  Aligned_cols=49  Identities=14%  Similarity=0.179  Sum_probs=33.4

Q ss_pred             CCCCCCCCCeEEEEeCCCCeE---------E---------eEecCCCccCceeEEEccCCCEEEEeCC
Q psy15750         48 GTKRPISVDTVLTLDKSTGLL---------I---------DAWGKNKFYMPHGCTVDNKGFIWLTDVA   97 (115)
Q Consensus        48 ~~~~~i~~~~I~vfdp~~G~~---------l---------~~~G~g~f~~P~Gi~vd~~g~I~VtD~~   97 (115)
                      ++.++++++++++|.+.+...         +         ..+.|+...+| |.+|.-.+.+||++..
T Consensus        46 ~~~~~~~rGDiVvf~~P~~~~~~~a~~r~yl~~g~~p~~~~~~iKRViglp-GD~V~i~~~v~iNg~~  112 (176)
T PRK13838         46 ALDRPVAVGDLVFICPPETAAFREARERGYLRRGLCPGGFAPLIKTVAALA-GQRVEIGGSVSIDGRP  112 (176)
T ss_pred             ccCCCCCCCcEEEEECCchhhhhhhhhcccccccccccCCCceEEEEEEeC-CcEEEECCEEEECCEE
Confidence            356899999999997522221         0         12446677788 8888755688888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
3fvz_A	329	Structure Of Peptidyl-Alpha-Hydroxyglycine Alpha-Am		1e-11

>pdb|3FVZ|A Chain A, Structure Of Peptidyl-Alpha-Hydroxyglycine Alpha-Amidating Lyase (Pal) Length = 329

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 52  PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
           PI  DT+L +D +   ++ + GKN FY+PHG ++D  G  W+TDVALHQVFK
Sbjct: 65  PIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFK 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	1e-14
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	2e-05
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	4e-05

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 67.1 bits (164), Expect = 1e-14
 Identities = 27/56 (48%), Positives = 37/56 (66%)

Query: 48  GTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
               PI  DT+L +D +   ++ + GKN FY+PHG ++D  G  W+TDVALHQVFK
Sbjct: 61  RGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFK 116

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 58  VLTLDKSTGLLIDAWGKN--KFYMPHGCTVDNKGFIWLTDVALHQVFK 103
              ++ S+G +ID +      F MPH       G +++ D   + V+K
Sbjct: 270 GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWK 317

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 64  STGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFK 103
             G  +  +G      P G TVDNKG I + +  + +V  
Sbjct: 107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVII 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.07
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.83
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.62
1b12_A	248	Signal peptidase I; serine proteinase, serine-depe	98.61
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.57
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.53
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.49
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.47
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.37
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.36
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.28
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.25
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.23
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.23
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.23
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.21
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.16
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.15
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.14
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.12
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.11
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.1
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.06
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.03
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.03
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.03
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.03
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.03
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.02
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.99
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.97
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.96
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.94
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.94
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.92
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.87
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.87
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.87
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.83
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.81
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.81
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.72
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.7
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.7
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.64
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.63
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.62
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.6
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.56
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.56
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.38
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.22
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.19
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.14
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.11
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.1
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.09
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.95
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.63
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.56
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.39
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.0
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.0
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	95.84
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	95.61
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.58
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	95.5
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.49
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.43
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.39
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.3
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	95.23
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.18
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	95.17
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.94
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	94.85
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.79
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	94.63
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	94.45
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.43
1umu_A	116	UMUD'; induced mutagenesis, SOS mutagenesis, DNA r	94.17
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	94.0
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	93.88
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	93.85
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.66
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	93.54
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	93.35
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	92.99
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	92.99
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	92.45
1kca_A	109	Repressor protein CI; gene regulation, DNA-binding	92.25
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	92.21
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	92.06
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	91.82
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	91.38
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.3
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	91.28
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	91.08
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	91.04
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	90.99
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	90.93
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	90.74
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	90.72
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	90.6
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	90.56
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	90.43
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	90.33
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	90.23
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	89.49
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	88.94
1jhf_A	202	LEXA repressor; LEXA SOS repressor, hydrolase; 1.8	88.84
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	88.79
2hnf_A	133	Repressor protein CI101-229DM-K192A; viral protein	88.69
3s9j_A	369	Member of DUF4221 family; 6-bladed beta-propeller,	88.18
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	87.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	87.75
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	87.64
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	87.64
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	87.55
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	87.36
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	85.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	85.77
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	85.66
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	85.52
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	85.12
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	85.1
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	85.04
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	84.63
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	83.23

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.07  E-value=4.1e-10  Score=85.08  Aligned_cols=94  Identities=31%  Similarity=0.462  Sum_probs=71.1

Q ss_pred             eEEEeeeeecCccCCCCcccceE-------EeecccccC-CCCCCCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccC
Q psy15750         17 YVARVDGTSMQPVCPSTYMDTLY-------CSIEESESG-TKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNK   88 (115)
Q Consensus        17 ~~~~v~G~Sm~pt~~~~~~D~~~-------~~~~~~~~~-~~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~   88 (115)
                      ++.++.|++++|..+....|...       +.....|.. ...++..+.|.++|+++|+++..++.+.+..|+|+++|++
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            45678889999887754322111       111111111 2346677899999997799999999999999999999999


Q ss_pred             CCEEEEeCCCCEEEEeCCCCCC
Q psy15750         89 GFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        89 g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      |++||+|..+++|++|+++|+.
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~  123 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKE  123 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSS
T ss_pred             CCEEEEECCCCEEEEEeCCCCe
Confidence            9999999999999999999974

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.83  E-value=4.2e-09  Score=79.49  Aligned_cols=55  Identities=15%  Similarity=0.344  Sum_probs=49.4

Q ss_pred             CCeEEEEeCCCCeEEeEec---------CCCccCceeEEEccC-CCEEEEeCCCCEEEEeCCC-CCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWG---------KNKFYMPHGCTVDNK-GFIWLTDVALHQVFKTPYT-YNF  110 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G---------~g~f~~P~Gi~vd~~-g~I~VtD~~~h~V~~f~~~-G~f  110 (115)
                      .+.|.+||+ +|+++..++         .+.+..|+|+++|++ |++||+|..+++|.+|+++ |++
T Consensus       165 ~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~  230 (329)
T 3fvz_A          165 NSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF  230 (329)
T ss_dssp             CCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE
T ss_pred             CCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE
Confidence            378999998 999999887         357889999999998 9999999999999999998 765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.62  E-value=1.9e-08  Score=80.32  Aligned_cols=53  Identities=23%  Similarity=0.295  Sum_probs=46.0

Q ss_pred             CCCeEEEEeCCCCeEEeEecCC----------------CccCceeEEEc-cCCCEEEEeCCCCEEEEeCCC
Q psy15750         54 SVDTVLTLDKSTGLLIDAWGKN----------------KFYMPHGCTVD-NKGFIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        54 ~~~~I~vfdp~~G~~l~~~G~g----------------~f~~P~Gi~vd-~~g~I~VtD~~~h~V~~f~~~  107 (115)
                      .+++|.+|+| +|++..-.|.+                +|..|+|+++| ++|+|||+|.++|+|.+++++
T Consensus       363 ~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          363 DSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            3589999999 99887766542                48899999999 899999999999999999875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.62  E-value=4.4e-08  Score=77.21  Aligned_cols=53  Identities=19%  Similarity=0.234  Sum_probs=44.4

Q ss_pred             CCeEEEEeCCCCeEEeEecC-------------CCccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGK-------------NKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~-------------g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~  107 (115)
                      +++|.+|++.+|++..-.|.             .+|..|+|+++|++|+|||+|..+|+|.+++.+
T Consensus       344 ~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          344 GYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            37899999338988766664             248899999999999999999999999998753

>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*

Probab=98.61  E-value=1.5e-08  Score=76.22  Aligned_cols=78  Identities=12%  Similarity=-0.052  Sum_probs=58.7

Q ss_pred             EecceeeEEEeeeeecCccCCCCcccceEEeecccccCC------------CCCCCCCeEEEEeCCCCeEEeEecCCCcc
Q psy15750         11 FCDSIGYVARVDGTSMQPVCPSTYMDTLYCSIEESESGT------------KRPISVDTVLTLDKSTGLLIDAWGKNKFY   78 (115)
Q Consensus        11 ~~d~v~~~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~------------~~~i~~~~I~vfdp~~G~~l~~~G~g~f~   78 (115)
                      +..++.++.+|+|.||.||++.++     +..++++.|.            .+.+++++|++|.+ ..+--..+.|+...
T Consensus         1 ir~fv~~~~~v~g~SM~Ptl~~GD-----~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~-p~~~~~~~iKRVig   74 (248)
T 1b12_A            1 VRSFIYEPFQIPSGSMMPTLLIGD-----FILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKY-PEDPKLDYIKRAVG   74 (248)
T ss_dssp             -CBCCEEEEECCSCTTTTTSCTTE-----EEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEEC-TTCTTSEEEEEEEE
T ss_pred             CeEEEEEEEEeccccccccccCCC-----EEEEEecccCcccccccccccccCCCCCCcEEEEEe-CCCCCceEEEEEEe
Confidence            356788999999999999999998     6777776553            46789999999975 32211235566777


Q ss_pred             CceeEEEc-cCC--CEEEEe
Q psy15750         79 MPHGCTVD-NKG--FIWLTD   95 (115)
Q Consensus        79 ~P~Gi~vd-~~g--~I~VtD   95 (115)
                      +| |.+|. .++  .+||++
T Consensus        75 lp-GD~v~i~~~~~~l~ING   93 (248)
T 1b12_A           75 LP-GDKVTYDPVSKELTIQP   93 (248)
T ss_dssp             CT-TCEEEEETTTTEEEEET
T ss_pred             eC-CCEEEEEcCceEEEECC
Confidence            89 77775 566  999998

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.57  E-value=2.1e-07  Score=67.64  Aligned_cols=55  Identities=15%  Similarity=0.178  Sum_probs=48.7

Q ss_pred             CCeEEEEeCCCCeEEeEecC-CCccCceeEEEccCCCEEEEeCCCC-EEEEeCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGK-NKFYMPHGCTVDNKGFIWLTDVALH-QVFKTPYTYNF  110 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~-g~f~~P~Gi~vd~~g~I~VtD~~~h-~V~~f~~~G~f  110 (115)
                      .+.|.+||+ +|+.+.+++. +.+..|.++++|++|++||+|..++ +|.+|+++|++
T Consensus       184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~  240 (286)
T 1q7f_A          184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQL  240 (286)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCE
T ss_pred             CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCE
Confidence            378999999 8999888874 5678999999999999999999885 99999999875

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.53  E-value=7.5e-08  Score=79.25  Aligned_cols=57  Identities=14%  Similarity=0.154  Sum_probs=48.2

Q ss_pred             CCCeEEEEeCCCCeEEeEecC----------------C------CccCceeEEEccC-CCEEEEeCCCCEEEEeCCCCCC
Q psy15750         54 SVDTVLTLDKSTGLLIDAWGK----------------N------KFYMPHGCTVDNK-GFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        54 ~~~~I~vfdp~~G~~l~~~G~----------------g------~f~~P~Gi~vd~~-g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      .+++|.+|++ +|.+..-.|.                |      +|..|+|+++|++ |+|||+|..+|+|.++++++++
T Consensus       399 ~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~  477 (496)
T 3kya_A          399 LNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE  477 (496)
T ss_dssp             GGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred             CCCEEEEEeC-CCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence            3589999998 9987655443                2      5889999999986 9999999999999999999876


Q ss_pred             C
Q psy15750        111 G  111 (115)
Q Consensus       111 ~  111 (115)
                      .
T Consensus       478 ~  478 (496)
T 3kya_A          478 N  478 (496)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.49  E-value=2.4e-07  Score=67.31  Aligned_cols=55  Identities=25%  Similarity=0.455  Sum_probs=49.1

Q ss_pred             CCeEEEEeCCCCeEEeEecC-CCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGK-NKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~-g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      .+.|.+||+ +|+.+..++. +.+..|+++++|++|++||+|..+++|++|+++|++
T Consensus       141 ~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~  196 (286)
T 1q7f_A          141 VMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY  196 (286)
T ss_dssp             TTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE
T ss_pred             CCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCE
Confidence            478999998 8999988875 567889999999999999999999999999998864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.47  E-value=1.1e-07  Score=75.74  Aligned_cols=53  Identities=19%  Similarity=0.322  Sum_probs=46.1

Q ss_pred             CCeEEEEeCCCCeEEeEecCC----------------CccCceeEEEcc-CCCEEEEeCCCCEEEEeCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKN----------------KFYMPHGCTVDN-KGFIWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g----------------~f~~P~Gi~vd~-~g~I~VtD~~~h~V~~f~~~G  108 (115)
                      +++|.+|++ +|++..-.|.+                +|..|+|+++|+ +|+|||+|.++|+|.+++++.
T Consensus       361 n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e~  430 (430)
T 3tc9_A          361 NHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYEE  430 (430)
T ss_dssp             GTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEECC
T ss_pred             CcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccCC
Confidence            489999998 99988777641                488999999998 699999999999999998763

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.37  E-value=6.7e-07  Score=65.17  Aligned_cols=56  Identities=14%  Similarity=0.076  Sum_probs=47.5

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      .+.|.++++ +|+....+....+..|+|+++|+ .+++||+|..+++|.+++.+|+..
T Consensus        57 ~~~I~~~~~-~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           57 EPSIGRASL-HGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             TTEEEEEES-SSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCEEEEEec-CCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence            478999999 77766666666678999999997 589999999999999999998753

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.36  E-value=5.6e-07  Score=70.87  Aligned_cols=56  Identities=21%  Similarity=0.204  Sum_probs=47.4

Q ss_pred             CCCeEEEEeCCCCeEEeEecCC-------------CccCceeEEEccCCCEEEEeC-CCCEEEEeC-CCCCC
Q psy15750         54 SVDTVLTLDKSTGLLIDAWGKN-------------KFYMPHGCTVDNKGFIWLTDV-ALHQVFKTP-YTYNF  110 (115)
Q Consensus        54 ~~~~I~vfdp~~G~~l~~~G~g-------------~f~~P~Gi~vd~~g~I~VtD~-~~h~V~~f~-~~G~f  110 (115)
                      .++.|.+|++ +|++....|.+             +|..|.|+++|++|++||+|. .+|+|++++ ++|+.
T Consensus       287 ~~~~I~~~~~-~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          287 NLSSVYKITP-DGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             TTTEEEEECT-TCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             CCCEEEEEec-CCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence            4589999999 88876666643             378899999999999999999 999999999 77753

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.28  E-value=3e-06  Score=60.84  Aligned_cols=57  Identities=16%  Similarity=0.184  Sum_probs=47.9

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCCCc
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFGD  112 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f~~  112 (115)
                      .+.|.+||+ +|++........+..|+++++|++|++||++..+++|.+|+++|++..
T Consensus       208 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~  264 (300)
T 2qc5_A          208 GNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQE  264 (300)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEE
T ss_pred             CCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEEE
Confidence            367999999 888766544556778999999999999999999999999999887643

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.25  E-value=1.2e-06  Score=66.48  Aligned_cols=56  Identities=21%  Similarity=0.177  Sum_probs=48.9

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCCC-CEEEEeCCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVAL-HQVFKTPYTYNFG  111 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~-h~V~~f~~~G~f~  111 (115)
                      .+.|.++++ +|+....+....+..|.|+++|+ +|++|++|.+. ++|++++++|+..
T Consensus        98 ~~~I~~~~~-~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~  155 (316)
T 1ijq_A           98 LGTVSVADT-KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (316)
T ss_dssp             TTEEEEEET-TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCEEEEEeC-CCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe
Confidence            478999999 89877777777788999999996 89999999986 9999999999764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.23  E-value=1.3e-06  Score=67.39  Aligned_cols=56  Identities=11%  Similarity=0.047  Sum_probs=49.0

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCCC-CEEEEeCCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVAL-HQVFKTPYTYNFG  111 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~-h~V~~f~~~G~f~  111 (115)
                      .+.|.++++ +|+.........+..|.|+++|+ +|.+|++|.+. ++|++++++|...
T Consensus       137 ~~~I~~~~~-dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~  194 (349)
T 3v64_C          137 TSRIEVANL-DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR  194 (349)
T ss_dssp             TTEEEEEET-TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CCeEEEEcC-CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc
Confidence            478999999 89877777777788999999996 88999999998 9999999999754

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.23  E-value=3e-06  Score=60.52  Aligned_cols=55  Identities=20%  Similarity=0.208  Sum_probs=45.0

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      +.|.+||+ ++..........+..|.++++|++|++||++..+++|++++++++..
T Consensus       171 ~~i~~~~~-~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          171 NRVVKLEA-ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             TEEEEECT-TTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             CEEEEEec-CCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence            67889998 66554444444568899999999999999999999999999998753

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.23  E-value=1.7e-06  Score=66.32  Aligned_cols=56  Identities=18%  Similarity=0.186  Sum_probs=49.9

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      .+.|.++++ +|+..+.++...+..|.|+++|+ ++++|++|..+++|.+++.+|...
T Consensus       144 ~~~I~r~~~-dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~  200 (318)
T 3sov_A          144 VPKIERAGM-DGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR  200 (318)
T ss_dssp             SCEEEEEET-TSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCEEEEEEc-CCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce
Confidence            478999999 89887787777899999999996 789999999999999999998654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.21  E-value=2.3e-06  Score=64.92  Aligned_cols=55  Identities=18%  Similarity=0.196  Sum_probs=49.3

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      +.|.++++ +|+..+.++...+..|.|+++|+ ++.+|++|..+|+|++++.+|...
T Consensus       143 ~~I~~~~~-dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~  198 (316)
T 1ijq_A          143 AKIKKGGL-NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  198 (316)
T ss_dssp             CEEEEEET-TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CeEEEEcC-CCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce
Confidence            78999999 99988888877889999999995 689999999999999999998653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.16  E-value=3.9e-06  Score=66.68  Aligned_cols=54  Identities=13%  Similarity=0.146  Sum_probs=42.5

Q ss_pred             CCeEEEEeCCCCeEEeEe-cCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAW-GKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTYN  109 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~-G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G~  109 (115)
                      .+.|.+|++ ++.....+ ..+....|.|++++++|+ +||+|..+|+|++++.+|.
T Consensus       247 ~~~V~~~~~-~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~  302 (430)
T 3tc9_A          247 AGQVFRYDF-TTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWK  302 (430)
T ss_dssp             TTEEEEEET-TTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCEEEEEEC-CCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcc
Confidence            378999999 55444232 233346799999999999 9999999999999998865

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.15  E-value=2.4e-06  Score=67.19  Aligned_cols=55  Identities=18%  Similarity=0.196  Sum_probs=49.5

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEc-cCCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVD-NKGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd-~~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      +.|.+++. +|+..+.+....+..|.|+++| .+++||++|..+|+|.+++.+|...
T Consensus       225 ~~I~~~~~-dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~  280 (400)
T 3p5b_L          225 AKIKKGGL-NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  280 (400)
T ss_dssp             CCEEEEET-TSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC
T ss_pred             CEEEEEeC-CCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc
Confidence            67999999 8988888888889999999999 5789999999999999999998754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.14  E-value=2.3e-06  Score=67.38  Aligned_cols=56  Identities=21%  Similarity=0.171  Sum_probs=49.2

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCC-CCEEEEeCCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVA-LHQVFKTPYTYNFG  111 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~-~h~V~~f~~~G~f~  111 (115)
                      ++.|.++++ +|+.........+..|.||++|+ +|.+|++|.+ +++|++++++|...
T Consensus       180 ~~~I~~~~~-~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~  237 (400)
T 3p5b_L          180 LGTVSVADT-KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  237 (400)
T ss_dssp             TTEEEEECT-TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred             CCeEEEEeC-CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence            478999999 89888888777888999999996 7899999987 59999999999764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.12  E-value=3.4e-06  Score=60.23  Aligned_cols=55  Identities=15%  Similarity=0.132  Sum_probs=45.4

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      .+.|.+|++ +|+.........+..|.++++|++|++||+|..+++|.+|+.+.+.
T Consensus       212 ~~~v~~~~~-~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          212 TNQVVKLLA-GSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             TSCEEEECT-TCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCcEEEEcC-CCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            367999998 7766555444557789999999999999999999999999987654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.11  E-value=4.2e-06  Score=60.87  Aligned_cols=56  Identities=14%  Similarity=0.132  Sum_probs=46.2

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCC--CCEEEEeCCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVA--LHQVFKTPYTYNFG  111 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~--~h~V~~f~~~G~f~  111 (115)
                      .+.|.++++ +|+....+....+..|+|+++|+ +|++|++|..  +++|++++.+|+..
T Consensus       100 ~~~I~~~~~-~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~  158 (267)
T 1npe_A          100 LDRIEVAKM-DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (267)
T ss_dssp             TTEEEEEET-TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             CCEEEEEEc-CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence            478999998 78765565555678999999998 6899999987  68999999998753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.10  E-value=4.1e-06  Score=62.58  Aligned_cols=73  Identities=10%  Similarity=-0.024  Sum_probs=53.6

Q ss_pred             EEeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCC
Q psy15750         19 ARVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVAL   98 (115)
Q Consensus        19 ~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~   98 (115)
                      ..++|++.+|..+.+..|.                ..+.|.+||+ +|++...+..+  ..|+|++++++|++||+|..+
T Consensus        32 ~~pegia~~~~g~lyv~d~----------------~~~~I~~~d~-~g~~~~~~~~~--~~p~gia~~~dG~l~vad~~~   92 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNH----------------EVGEIVSITP-DGNQQIHATVE--GKVSGLAFTSNGDLVATGWNA   92 (306)
T ss_dssp             CCEEEEEECTTSCEEEEET----------------TTTEEEEECT-TCCEEEEEECS--SEEEEEEECTTSCEEEEEECT
T ss_pred             CCcceEEECCCCCEEEEeC----------------CCCeEEEECC-CCceEEEEeCC--CCceeEEEcCCCcEEEEeccC
Confidence            4567788887655554332                2378999999 88877666543  369999999999999999664


Q ss_pred             --CEEEEeC-CCCCC
Q psy15750         99 --HQVFKTP-YTYNF  110 (115)
Q Consensus        99 --h~V~~f~-~~G~f  110 (115)
                        +++++++ ++|+.
T Consensus        93 ~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           93 DSIPVVSLVKSDGTV  107 (306)
T ss_dssp             TSCEEEEEECTTSCE
T ss_pred             CcceEEEEcCCCCeE
Confidence              4699886 56654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.06  E-value=1.6e-05  Score=57.06  Aligned_cols=56  Identities=18%  Similarity=0.247  Sum_probs=47.1

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      .+.|.++|+ +|++...-....+..|.++++|++|++||++...+++++++++|++.
T Consensus       166 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~  221 (300)
T 2qc5_A          166 NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEIS  221 (300)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEE
T ss_pred             CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEE
Confidence            368999999 88877543445677899999999999999999999999999988754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.03  E-value=1.4e-05  Score=57.33  Aligned_cols=57  Identities=11%  Similarity=0.109  Sum_probs=46.6

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCCCc
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFGD  112 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f~~  112 (115)
                      .+.|.+||+ +|++...-.......|+++++|++|++||++...++|.+++++|++..
T Consensus       203 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~  259 (299)
T 2z2n_A          203 GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEE  259 (299)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEEE
T ss_pred             CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCceEE
Confidence            368999999 888754323445678999999999999999999999999999876543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.03  E-value=4.9e-06  Score=71.53  Aligned_cols=57  Identities=21%  Similarity=0.168  Sum_probs=50.3

Q ss_pred             CCCeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCCC-CEEEEeCCCCCCC
Q psy15750         54 SVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVAL-HQVFKTPYTYNFG  111 (115)
Q Consensus        54 ~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~-h~V~~f~~~G~f~  111 (115)
                      ..+.|.++++ +|+..+.+....+..|.||+||+ .|+||++|.+. ++|.+++++|...
T Consensus       491 ~~~~I~v~~l-dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~  549 (791)
T 3m0c_C          491 VLGTVSVADT-KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  549 (791)
T ss_dssp             TTTEEEEEET-TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCCeEEEEeC-CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce
Confidence            3479999999 89988888878888999999996 59999999986 9999999999764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.03  E-value=6.4e-06  Score=63.11  Aligned_cols=55  Identities=16%  Similarity=0.127  Sum_probs=47.5

Q ss_pred             CCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCC-CCCC
Q psy15750         54 SVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPY-TYNF  110 (115)
Q Consensus        54 ~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~-~G~f  110 (115)
                      ..+.|..+|. +|+..+.+..+.+..|.|+++| ++.+|++|..+++|+++++ +|+.
T Consensus       186 ~~~~I~~~d~-dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          186 KLNFIHKSNL-DGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             TTTEEEEEET-TSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCEEEEEcC-CCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence            3488999999 8887777777788999999998 5689999999999999998 5764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.03  E-value=1.7e-05  Score=63.15  Aligned_cols=54  Identities=13%  Similarity=0.113  Sum_probs=41.8

Q ss_pred             CCeEEEEeCCCCeEEeEe-cCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAW-GKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~-G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G  108 (115)
                      .+.|.+||+.+|++...+ ..+....|.+++++++|+ +||+|..+|+|++++.++
T Consensus       249 ~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          249 HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred             CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence            478999999558774333 233345677899999998 999999999999987663

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.03  E-value=3.6e-06  Score=65.74  Aligned_cols=56  Identities=11%  Similarity=0.047  Sum_probs=48.6

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCCC-CEEEEeCCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVAL-HQVFKTPYTYNFG  111 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~-h~V~~f~~~G~f~  111 (115)
                      .+.|.++++ +|+.........+..|.|+++|+ +|.+|++|.+. ++|++++++|...
T Consensus       180 ~~~I~~~~~-dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~  237 (386)
T 3v65_B          180 TSRIEVANL-DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR  237 (386)
T ss_dssp             TTEEEECBT-TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CCeEEEEeC-CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc
Confidence            468999998 88877777777789999999995 78999999998 9999999999754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.02  E-value=9.3e-06  Score=69.83  Aligned_cols=55  Identities=18%  Similarity=0.196  Sum_probs=50.7

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEc-cCCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVD-NKGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd-~~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      +.|.+++. +|+..+.++...+..|.||++| .+++||++|..+|+|.+++.+|...
T Consensus       537 ~~I~~~~~-dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~  592 (791)
T 3m0c_C          537 AKIKKGGL-NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  592 (791)
T ss_dssp             CEEEEEET-TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CeEEEEec-CCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence            68999999 9999889998889999999999 6899999999999999999999764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.99  E-value=8.2e-06  Score=62.90  Aligned_cols=55  Identities=15%  Similarity=0.052  Sum_probs=46.5

Q ss_pred             CCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeC-CCCCC
Q psy15750         54 SVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTP-YTYNF  110 (115)
Q Consensus        54 ~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~-~~G~f  110 (115)
                      ..+.|..+|+ +|+..+.+....+..|.|++++ ++++|++|..+++|.+++ .+|+.
T Consensus       223 ~~~~I~~~~~-dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          223 KHHVIERANL-DGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             TTTEEEEEET-TSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCEEEEEeC-CCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence            3478999998 8887777776678899999994 789999999999999998 57764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.97  E-value=6.9e-06  Score=68.67  Aligned_cols=56  Identities=13%  Similarity=0.191  Sum_probs=50.1

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCCCC--EEEEeCCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVALH--QVFKTPYTYNFG  111 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~h--~V~~f~~~G~f~  111 (115)
                      ++.|.+++. +|+..+....+.+..|.+|++|+ +|.+|++|.+.+  +|.+++++|...
T Consensus       410 ~~~I~v~~~-~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~  468 (628)
T 4a0p_A          410 TNVINVTRL-DGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER  468 (628)
T ss_dssp             TTEEEEEET-TSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC
T ss_pred             CCEEEEEEC-CCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc
Confidence            378999999 99988888777888999999997 999999999987  799999999864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.96  E-value=6e-06  Score=61.64  Aligned_cols=54  Identities=7%  Similarity=-0.009  Sum_probs=40.9

Q ss_pred             CCeEEEEeCCC-CeE--EeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         55 VDTVLTLDKST-GLL--IDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        55 ~~~I~vfdp~~-G~~--l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      ++.|.+|+.+. |++  .+.+.  .+..|.|+++|++|++||+|..+++|.+|+++|+.
T Consensus       188 ~~~I~~~~~~~~g~~~~~~~~~--~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~  244 (306)
T 2p4o_A          188 KMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST  244 (306)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE
T ss_pred             CCEEEEEEeCCCCCCCccEEEe--ccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCE
Confidence            46788887621 332  11111  23579999999999999999999999999999976

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.94  E-value=5.6e-06  Score=68.11  Aligned_cols=35  Identities=17%  Similarity=0.056  Sum_probs=32.0

Q ss_pred             CccCce-eEEEc-------cCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         76 KFYMPH-GCTVD-------NKGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        76 ~f~~P~-Gi~vd-------~~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      +|..|+ |+++|       ++|+|||+|..+|+|.+++++|..
T Consensus       370 ~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v  412 (496)
T 3kya_A          370 RMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIV  412 (496)
T ss_dssp             BCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBE
T ss_pred             ccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCCE
Confidence            688999 89998       789999999999999999999854

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.94  E-value=3.8e-05  Score=54.97  Aligned_cols=56  Identities=11%  Similarity=0.159  Sum_probs=46.9

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      .+.|.++|+ +|++...........|.++++|++|++||++...+++++++++|++.
T Consensus       161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~  216 (299)
T 2z2n_A          161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEIT  216 (299)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEE
T ss_pred             CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEE
Confidence            368999999 88886543455567899999999999999999999999999987754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.92  E-value=9.4e-06  Score=67.66  Aligned_cols=56  Identities=14%  Similarity=0.194  Sum_probs=48.9

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCC-CCEEEEeCCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVA-LHQVFKTPYTYNFG  111 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~-~h~V~~f~~~G~f~  111 (115)
                      .+.|.++++ +|+..+......+..|.||++|+ +|.+|+||.+ +++|.+.+++|...
T Consensus       105 ~~~I~v~~~-dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~  162 (619)
T 3s94_A          105 TNRIEVSNL-DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR  162 (619)
T ss_dssp             TTEEEEEET-TSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CCEEEEEEC-CCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence            489999999 89887777777899999999997 5899999987 68999999999754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.87  E-value=1.7e-05  Score=66.26  Aligned_cols=54  Identities=11%  Similarity=0.073  Sum_probs=48.6

Q ss_pred             eEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         57 TVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        57 ~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      .|..+++ +|+..+.+....+..|.|+++|. +++||++|..+++|.+++.+|...
T Consensus       457 ~I~r~~~-dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r  511 (628)
T 4a0p_A          457 KIERAAL-DGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR  511 (628)
T ss_dssp             EEEEEET-TSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             eEEEEeC-CCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCce
Confidence            7889998 89988888887899999999996 589999999999999999999764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.87  E-value=7.2e-06  Score=62.16  Aligned_cols=50  Identities=8%  Similarity=0.113  Sum_probs=39.5

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTP  105 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~  105 (115)
                      +.|.+||+++|++..-.....+..|.+++++++|++||++...|++..|.
T Consensus       269 ~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          269 SAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             TEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             CeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            78999998678865444433578999999999999999998877665554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.87  E-value=1.1e-05  Score=68.04  Aligned_cols=57  Identities=21%  Similarity=0.172  Sum_probs=49.6

Q ss_pred             CCCeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCCC-CEEEEeCCCCCCC
Q psy15750         54 SVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVAL-HQVFKTPYTYNFG  111 (115)
Q Consensus        54 ~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~-h~V~~f~~~G~f~  111 (115)
                      ..+.|.++++ +|+....+....+..|+|+++|+ .|+||++|.+. ++|++++++|...
T Consensus       473 ~~~~I~v~d~-dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~  531 (699)
T 1n7d_A          473 VLGTVSVADT-KGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  531 (699)
T ss_dssp             TTSCEEEEBS-SSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC
T ss_pred             cCCeEEEEec-CCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe
Confidence            3578999999 89888888877888999999996 68999999886 8999999998754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.83  E-value=3.8e-05  Score=59.90  Aligned_cols=55  Identities=13%  Similarity=0.177  Sum_probs=46.1

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEc-cCCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVD-NKGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd-~~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      +.|.++++ +|+....+....+..|.|+++| .+++||++|..+++|.+++.+|...
T Consensus       225 ~~I~r~~~-dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~  280 (386)
T 3v65_B          225 PRIEASSM-DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR  280 (386)
T ss_dssp             CEEEEEET-TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC
T ss_pred             CEEEEEeC-CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee
Confidence            66777777 7776666666678899999999 5899999999999999999998653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.81  E-value=2.6e-05  Score=65.71  Aligned_cols=54  Identities=19%  Similarity=0.206  Sum_probs=47.7

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      +.|.++++ +|+....+....+..|.||++|+ +++||++|..+|+|.+++.+|..
T Consensus       519 ~~I~~~~~-dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~  573 (699)
T 1n7d_A          519 AKIKKGGL-NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  573 (699)
T ss_dssp             CCEEBCCS-SSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC
T ss_pred             CeEEEEeC-CCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc
Confidence            68899998 88887777777789999999996 58999999999999999999854

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.81  E-value=2e-05  Score=65.73  Aligned_cols=56  Identities=13%  Similarity=0.160  Sum_probs=49.0

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCCC-CEEEEeCCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVAL-HQVFKTPYTYNFG  111 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~-h~V~~f~~~G~f~  111 (115)
                      ++.|.+++. +|+..+......+..|.+|++|+ +|.+|++|.+. ++|.+++++|...
T Consensus       413 ~~~I~v~~~-~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~  470 (619)
T 3s94_A          413 TDRIEVTRL-NGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR  470 (619)
T ss_dssp             TTEEEEEET-TSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CCcEEEEeC-CCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc
Confidence            479999999 89887777777899999999997 59999999885 8999999999754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.73  E-value=6.6e-05  Score=55.91  Aligned_cols=55  Identities=13%  Similarity=0.050  Sum_probs=47.7

Q ss_pred             CCeEEEEeCCCCeEEeEecC-----CCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGK-----NKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~-----g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      .+.|+.||+ +|+++.++..     +.+..|++++++++|+++|++..+++|+.||++|+.
T Consensus        98 ~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~  157 (276)
T 3no2_A           98 PSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQL  157 (276)
T ss_dssp             TEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred             CCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCE
Confidence            468889999 9999988872     345578899999999999999999999999999875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.72  E-value=0.0001  Score=53.77  Aligned_cols=54  Identities=15%  Similarity=0.045  Sum_probs=43.1

Q ss_pred             CCCeEEEEeCC-CCeE---EeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         54 SVDTVLTLDKS-TGLL---IDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        54 ~~~~I~vfdp~-~G~~---l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      ..+.|.+|+.. +|++   .+.+ ......|.|+++|++|++||++  .+.|++|+++|+.
T Consensus       191 ~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~  248 (296)
T 3e5z_A          191 GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDE  248 (296)
T ss_dssp             TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCE
T ss_pred             CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCE
Confidence            34688898763 5766   4455 5556789999999999999998  7899999999874

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.70  E-value=0.00014  Score=54.91  Aligned_cols=51  Identities=14%  Similarity=0.256  Sum_probs=40.1

Q ss_pred             CeEEEEeCCCCeEEeEec--C------CCccCceeEEEccCCCEEEEeCCCCEEEEeCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWG--K------NKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G--~------g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G  108 (115)
                      ..++++|+ +|+++..+-  +      ..+.-|+|||+|++|++||+...| ..|+|.+++
T Consensus       195 ~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n-~~y~f~~~~  253 (255)
T 3qqz_A          195 RALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPN-RFYRFTPQS  253 (255)
T ss_dssp             TEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTT-EEEEEEC--
T ss_pred             CeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCc-eEEEEEecC
Confidence            68889998 899766554  2      246789999999999999996665 899998764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.70  E-value=6.9e-05  Score=55.36  Aligned_cols=55  Identities=20%  Similarity=0.257  Sum_probs=41.4

Q ss_pred             CeEEEEeC--CCCeEEe--EecC--CCccCceeEEEccCCCEEEEeCCCCEEEEeCCC-CCC
Q psy15750         56 DTVLTLDK--STGLLID--AWGK--NKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT-YNF  110 (115)
Q Consensus        56 ~~I~vfdp--~~G~~l~--~~G~--g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~-G~f  110 (115)
                      +.|.+|+.  ++|++..  .+..  .....|.|+++|++|++||++...++|++|+++ |++
T Consensus       171 ~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~  232 (297)
T 3g4e_A          171 YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKR  232 (297)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCE
T ss_pred             CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceE
Confidence            67888863  4676532  1211  123579999999999999999999999999997 875

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.64  E-value=4.4e-05  Score=56.96  Aligned_cols=52  Identities=13%  Similarity=0.098  Sum_probs=38.3

Q ss_pred             CeEEEEeCCCCeE---EeEecCCCccCceeEEEccCCCEEEEeCC----------CCEEEEeCCCCCC
Q psy15750         56 DTVLTLDKSTGLL---IDAWGKNKFYMPHGCTVDNKGFIWLTDVA----------LHQVFKTPYTYNF  110 (115)
Q Consensus        56 ~~I~vfdp~~G~~---l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~----------~h~V~~f~~~G~f  110 (115)
                      +.|.+|+. ++..   .+.+.. .-. |.|+++|++|++||++..          .++|++|+++|+.
T Consensus       207 ~~I~~~~~-~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~  271 (322)
T 2fp8_A          207 HQIVKYWL-EGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNI  271 (322)
T ss_dssp             TEEEEEES-SSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCE
T ss_pred             CeEEEEEC-CCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCE
Confidence            78899987 4421   122222 112 999999999999999876          5789999999875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.63  E-value=0.00016  Score=52.74  Aligned_cols=53  Identities=8%  Similarity=0.099  Sum_probs=43.3

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCC-CCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPY-TYNFG  111 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~-~G~f~  111 (115)
                      +.|..||+ ++. ...+.. ....|++++++++|++||++.+.++|+++++ +|++.
T Consensus        50 ~~i~~~~~-~~~-~~~~~~-~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           50 NRTWAWSD-DGQ-LSPEMH-PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             TEEEEEET-TSC-EEEEES-SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred             CEEEEEEC-CCC-eEEEEC-CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence            68999999 555 555543 3457999999999999999999999999998 77754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.62  E-value=0.00019  Score=53.36  Aligned_cols=53  Identities=11%  Similarity=0.095  Sum_probs=47.3

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCC-CCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT-YNF  110 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~-G~f  110 (115)
                      .+.|..||+ +|+++.+++.+  ..|++..+.++|+++|++..+++|+.++++ |++
T Consensus       145 ~~~v~~~d~-~G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          145 TSEVREIAP-NGQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             TTEEEEECT-TSCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred             CCEEEEECC-CCCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence            478999999 69999998865  468899999999999999999999999999 875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.60  E-value=0.0001  Score=55.77  Aligned_cols=53  Identities=13%  Similarity=0.164  Sum_probs=43.2

Q ss_pred             CCeEEEEeCCCCeEEeEecCC-----CccCceeEEEcc-CCCEEEEeC---CCCEEEEeCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKN-----KFYMPHGCTVDN-KGFIWLTDV---ALHQVFKTPYT  107 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g-----~f~~P~Gi~vd~-~g~I~VtD~---~~h~V~~f~~~  107 (115)
                      .+.|++||+++|++++.+.-.     ....|+++++|+ +|.+||+|.   ..+.|++++.+
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~  153 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ  153 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred             CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence            478999998779988877532     234789999996 589999999   88999999875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.56  E-value=7.2e-05  Score=56.35  Aligned_cols=54  Identities=11%  Similarity=0.087  Sum_probs=40.7

Q ss_pred             eEEEEeCCCCeEEe-EecCCCccCceeEEEcc-CCCEEEEe----CCCCEEEEeCCCCCC
Q psy15750         57 TVLTLDKSTGLLID-AWGKNKFYMPHGCTVDN-KGFIWLTD----VALHQVFKTPYTYNF  110 (115)
Q Consensus        57 ~I~vfdp~~G~~l~-~~G~g~f~~P~Gi~vd~-~g~I~VtD----~~~h~V~~f~~~G~f  110 (115)
                      .|.+||++++++.. .+.......|.|+++|+ +|++||+|    ..+++|++|+++|++
T Consensus       245 ~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~  304 (328)
T 3dsm_A          245 DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKL  304 (328)
T ss_dssp             SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCE
T ss_pred             EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCE
Confidence            56777775666532 12221246899999997 89999999    889999999999875

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.56  E-value=0.00022  Score=53.12  Aligned_cols=55  Identities=9%  Similarity=0.005  Sum_probs=42.7

Q ss_pred             CCeEEEEeCCCCeEEeEecCC---CccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKN---KFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g---~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      .+.|.+||| +|+++..+...   .+..|.+++. .+|++||++..+++|.+|+++.+++
T Consensus       259 ~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~~  316 (322)
T 2fp8_A          259 DPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKGN  316 (322)
T ss_dssp             EEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-----
T ss_pred             ccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccccC
Confidence            367999999 89999888743   2778888876 5899999999999999999987764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.38  E-value=0.00046  Score=49.93  Aligned_cols=55  Identities=5%  Similarity=-0.083  Sum_probs=39.1

Q ss_pred             CeEEEEeCC-CCeEE-----eEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCC-CCC
Q psy15750         56 DTVLTLDKS-TGLLI-----DAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT-YNF  110 (115)
Q Consensus        56 ~~I~vfdp~-~G~~l-----~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~-G~f  110 (115)
                      +.|.+||++ +|++.     ..+....+..|.++++|++|++||++...++|++|+++ |++
T Consensus       198 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~  259 (314)
T 1pjx_A          198 KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP  259 (314)
T ss_dssp             TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC
T ss_pred             CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE
Confidence            566677642 34431     12211222679999999999999999889999999998 765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.22  E-value=0.0008  Score=48.65  Aligned_cols=51  Identities=14%  Similarity=0.131  Sum_probs=41.7

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.+||+++|+++..+... ...|.+++++++|+ +||++..++.+++|+.+
T Consensus       247 ~~i~~~d~~~g~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          247 SHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CEEEEEcCCCCcEeEEEeCC-CCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            68999999448876665432 35789999999998 99999988999999875

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.19  E-value=0.00098  Score=49.17  Aligned_cols=56  Identities=11%  Similarity=0.028  Sum_probs=43.9

Q ss_pred             CCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         53 ISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        53 i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      +..+.|..+++ +|++. .+-. .-..|+|++.|++|++|+++.+.++|.+++++|++.
T Consensus        64 ~~~~~i~~~~~-~g~~~-~~~~-~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~  119 (305)
T 3dr2_A           64 LVGRRVLGWRE-DGTVD-VLLD-ATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAH  119 (305)
T ss_dssp             TTTTEEEEEET-TSCEE-EEEE-SCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE
T ss_pred             CCCCEEEEEeC-CCCEE-EEeC-CCCccceeeECCCCCEEEEECCCCEEEEECCCCCEE
Confidence            44578999998 78743 2221 234699999999999999999999999999988753

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.14  E-value=0.00059  Score=50.12  Aligned_cols=55  Identities=13%  Similarity=0.222  Sum_probs=40.2

Q ss_pred             CeEEEEeCC-CCeEEeEecCC------CccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         56 DTVLTLDKS-TGLLIDAWGKN------KFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        56 ~~I~vfdp~-~G~~l~~~G~g------~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      +.|.+||.. +|+.+..+++.      ....|.++++|++|++||++..+++|++++++|+.
T Consensus       204 ~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~  265 (333)
T 2dg1_A          204 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYP  265 (333)
T ss_dssp             TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCE
T ss_pred             CeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCCE
Confidence            578888763 24443332211      12479999999999999999888999999998763

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.11  E-value=0.0017  Score=47.64  Aligned_cols=54  Identities=7%  Similarity=0.150  Sum_probs=41.3

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCC----CEEEEeCCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVAL----HQVFKTPYTYNF  110 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~----h~V~~f~~~G~f  110 (115)
                      +.|.+||+++|++.... ...-..|++++.+++|++||++...    +.|+++++++..
T Consensus        66 ~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~  123 (333)
T 2dg1_A           66 GNIFKINPETKEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  123 (333)
T ss_dssp             CEEEEECTTTCCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CEEEEEeCCCCcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE
Confidence            67999998556654432 1223579999999999999998776    799999988754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.10  E-value=0.00062  Score=53.58  Aligned_cols=55  Identities=4%  Similarity=-0.029  Sum_probs=45.6

Q ss_pred             CCeEEEEeCC---CCeEEeEec-----CC-------CccCceeEEEccCCCEEEEeCCC-CEEEEeCCCCC
Q psy15750         55 VDTVLTLDKS---TGLLIDAWG-----KN-------KFYMPHGCTVDNKGFIWLTDVAL-HQVFKTPYTYN  109 (115)
Q Consensus        55 ~~~I~vfdp~---~G~~l~~~G-----~g-------~f~~P~Gi~vd~~g~I~VtD~~~-h~V~~f~~~G~  109 (115)
                      ...++.||++   +|+.+....     ++       .+..|.++++|++||+||+|... ..|+|.+++|+
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence            4679999994   488766554     12       55679999999999999999998 99999999998

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.09  E-value=0.0014  Score=49.25  Aligned_cols=52  Identities=12%  Similarity=0.048  Sum_probs=45.0

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G  108 (115)
                      .+.|.++|+++++++.++.  ....|++++++++|.+||++...++|.++|++.
T Consensus        63 ~~~v~viD~~t~~~~~~i~--~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t  114 (328)
T 3dsm_A           63 SHVIFAIDINTFKEVGRIT--GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT  114 (328)
T ss_dssp             GTEEEEEETTTCCEEEEEE--CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT
T ss_pred             CCEEEEEECcccEEEEEcC--CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence            3789999998899988883  357899999998899999997789999998763

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.95  E-value=0.0016  Score=48.06  Aligned_cols=55  Identities=24%  Similarity=0.398  Sum_probs=40.2

Q ss_pred             CeEEEEeCCCCeEEeE---ecCCCccCceeEEEccCCCEEEEeC-----------------CCCEEEEeCC-CCCCC
Q psy15750         56 DTVLTLDKSTGLLIDA---WGKNKFYMPHGCTVDNKGFIWLTDV-----------------ALHQVFKTPY-TYNFG  111 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~---~G~g~f~~P~Gi~vd~~g~I~VtD~-----------------~~h~V~~f~~-~G~f~  111 (115)
                      ..|.++++ +|++..-   .....+..|+.+++|++|++|+||.                 ....|+++++ .|++.
T Consensus       107 ~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~  182 (305)
T 3dr2_A          107 RAITRSDA-DGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ  182 (305)
T ss_dssp             TEEEEECT-TSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE
T ss_pred             CEEEEECC-CCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE
Confidence            57888888 6875332   2223466799999999999999974                 1368999998 46653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.63  E-value=0.0075  Score=45.31  Aligned_cols=50  Identities=8%  Similarity=0.017  Sum_probs=43.9

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPY  106 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~  106 (115)
                      +.|+.+|+ +|++++++--+.+.=|.||+++++|.+||++..+|+++.|+-
T Consensus        49 ~~I~~ld~-~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           49 AAIVEMTT-NGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EEEEEEET-TCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEeC-CCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            78999999 799999986556678999999999999999999999998753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.56  E-value=0.0082  Score=44.87  Aligned_cols=34  Identities=21%  Similarity=0.118  Sum_probs=30.3

Q ss_pred             ccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         77 FYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        77 f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      ...|.|+++|++|++||++.+..+|++++++|+.
T Consensus       229 ~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~  262 (326)
T 2ghs_A          229 KGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNH  262 (326)
T ss_dssp             SSEEEEEEECTTSCEEEEEETTTEEEEECTTCCE
T ss_pred             CCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCE
Confidence            3579999999999999999888899999998864

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.39  E-value=0.014  Score=42.70  Aligned_cols=55  Identities=11%  Similarity=-0.039  Sum_probs=39.5

Q ss_pred             CeEEEEeCCCCeEEeEecC---CCccCceeEEEccCCCEEEEeCC-----------CCEEEEeCCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGK---NKFYMPHGCTVDNKGFIWLTDVA-----------LHQVFKTPYTYNF  110 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~---g~f~~P~Gi~vd~~g~I~VtD~~-----------~h~V~~f~~~G~f  110 (115)
                      ..|.+||+++|++..-...   ..+..|.++++|++|++|+++..           ..++++++++|+.
T Consensus        73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~  141 (297)
T 3g4e_A           73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV  141 (297)
T ss_dssp             TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE
T ss_pred             CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE
Confidence            5788888855665322111   23567899999999999999743           4589999998764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.00  E-value=0.027  Score=42.48  Aligned_cols=52  Identities=13%  Similarity=0.054  Sum_probs=43.7

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~  107 (115)
                      .+.|.++|+++|+++.+.--+.-..+.|++++ .+.+|++++..++++++|++
T Consensus        43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~   94 (266)
T 2iwa_A           43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRR   94 (266)
T ss_dssp             TCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETT
T ss_pred             CCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECC
Confidence            47899999999999998654445567789997 56999999999999999976

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.00  E-value=0.027  Score=42.23  Aligned_cols=52  Identities=15%  Similarity=0.091  Sum_probs=43.3

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~  107 (115)
                      ++.|.++|+++|+++++.--..-..+.|++++ .+.+|+.++..+++++||++
T Consensus        42 ~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~   93 (243)
T 3mbr_X           42 RSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLA   93 (243)
T ss_dssp             SCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred             CceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECC
Confidence            46899999999999988764444566788887 58999999999999999975

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=95.84  E-value=0.054  Score=38.99  Aligned_cols=53  Identities=4%  Similarity=0.085  Sum_probs=43.2

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G  108 (115)
                      +.|.++|.++|+++.++-.+....|+++++.++|+ +|+++...++|++++.+.
T Consensus        21 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t   74 (349)
T 1jmx_B           21 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT   74 (349)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC
Confidence            78999998789988776544333589999999986 899998899999998763

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=95.61  E-value=0.033  Score=40.36  Aligned_cols=51  Identities=22%  Similarity=0.277  Sum_probs=42.6

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      .+.|.++|+.+|+.+..+-.+  ..|++++++++|+ +||++...++|..+|.+
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHND--LKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEES--SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CccEEEEcCCCCeEEEEEecC--CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            468999999889888776533  2489999999987 99999988999999875

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.58  E-value=0.04  Score=42.37  Aligned_cols=54  Identities=13%  Similarity=0.099  Sum_probs=39.3

Q ss_pred             CeEEEEeCCCCe---------EEeEecCCCccCceeEEEccCCCEEEEeCC-------------CCEEEEeCCCCCC
Q psy15750         56 DTVLTLDKSTGL---------LIDAWGKNKFYMPHGCTVDNKGFIWLTDVA-------------LHQVFKTPYTYNF  110 (115)
Q Consensus        56 ~~I~vfdp~~G~---------~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~-------------~h~V~~f~~~G~f  110 (115)
                      +.|..|+. ++.         ++..+..+....|+++++++||++||++-.             +.+|++++++|+.
T Consensus       105 ~~v~r~~~-~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~  180 (354)
T 3a9g_A          105 NRVIRGRL-DGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP  180 (354)
T ss_dssp             EEEEEEEE-CSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred             eEEEEEEE-CCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence            56888876 432         233344455667999999999999999422             3589999999974

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=95.50  E-value=0.035  Score=42.14  Aligned_cols=51  Identities=16%  Similarity=0.016  Sum_probs=42.3

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.++|+++|+++++.--+.-..+.|++++ .+.||+.++..+++++||++
T Consensus        65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           65 SSIRKVDIESGKTLQQIELGKRYFGEGISDW-KDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             EEEEEECTTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred             ceEEEEECCCCcEEEEEecCCccceeEEEEe-CCEEEEEEeeCCEEEEEECc
Confidence            5899999999999988764444456788987 46999999999999999985

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.49  E-value=0.031  Score=43.83  Aligned_cols=70  Identities=10%  Similarity=-0.071  Sum_probs=48.6

Q ss_pred             eeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecC-----CCccCceeEEEccCCCEE-EE
Q psy15750         21 VDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGK-----NKFYMPHGCTVDNKGFIW-LT   94 (115)
Q Consensus        21 v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~-----g~f~~P~Gi~vd~~g~I~-Vt   94 (115)
                      +.+++.|+..|.|+.|...+               +.|..++| +|+.+..|..     ....-|.||++.++|+.. |.
T Consensus       139 ~nDvavD~~GnaYVt~s~~~---------------~~I~rV~p-dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~  202 (334)
T 2p9w_A          139 VVQSAQDRDGNSYVAFALGM---------------PAIARVSA-DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAF  202 (334)
T ss_dssp             EEEEEECTTSCEEEEEEESS---------------CEEEEECT-TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEE
T ss_pred             CceeEECCCCCEEEeCCCCC---------------CeEEEEeC-CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEE
Confidence            45566666666665443220               57999999 9997676652     223347799999999755 55


Q ss_pred             eCCCCEEEEeCCC
Q psy15750         95 DVALHQVFKTPYT  107 (115)
Q Consensus        95 D~~~h~V~~f~~~  107 (115)
                      +. .+++++||..
T Consensus       203 ~~-~g~L~~fD~~  214 (334)
T 2p9w_A          203 GG-PRALTAFDVS  214 (334)
T ss_dssp             SS-SSSEEEEECS
T ss_pred             cC-CCeEEEEcCC
Confidence            77 9999999966

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.43  E-value=0.044  Score=42.17  Aligned_cols=52  Identities=21%  Similarity=0.254  Sum_probs=38.4

Q ss_pred             CCeEEEEeCCCCeE----------EeEecCCCccCceeEEEcc-CCCEEEEeCCCC---EEEEeCCCCCC
Q psy15750         55 VDTVLTLDKSTGLL----------IDAWGKNKFYMPHGCTVDN-KGFIWLTDVALH---QVFKTPYTYNF  110 (115)
Q Consensus        55 ~~~I~vfdp~~G~~----------l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~h---~V~~f~~~G~f  110 (115)
                      .+.|+.+++ +|++          +..+|   +..|.|+++|+ +|++|++|.+.+   ++....+.+++
T Consensus       168 ~G~I~ri~~-dG~~p~~npf~~~~i~a~G---~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~ny  233 (354)
T 3a9g_A          168 AGKILRVDE-EGRPPADNPFPNSPIWSYG---HRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNY  233 (354)
T ss_dssp             SSEEEEECT-TSCCCTTSSSTTCCEEEEC---CSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBC
T ss_pred             CeEEEEEcC-CCCCCCCCCCCCCcEEEEc---cCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcC
Confidence            468999999 8862          33444   45799999998 899999999864   46666554443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.39  E-value=0.082  Score=37.72  Aligned_cols=52  Identities=13%  Similarity=0.053  Sum_probs=42.3

Q ss_pred             CeEEEEeCCCCeEEeEecCCCcc-CceeEEEccCC-CEEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFY-MPHGCTVDNKG-FIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~-~P~Gi~vd~~g-~I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.++|..+|+++..+-.+.-. .|++++++++| .+|+++...++|.+++..
T Consensus        11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~   64 (337)
T 1pby_B           11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence            68999999889988877543322 48999999998 589999888999999875

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.30  E-value=0.052  Score=41.49  Aligned_cols=54  Identities=9%  Similarity=0.107  Sum_probs=38.6

Q ss_pred             CeEEEEeCCCCe------EEeEec--CCCccCceeEEEccCCCEEEEeCC-------------CCEEEEeCCCCC
Q psy15750         56 DTVLTLDKSTGL------LIDAWG--KNKFYMPHGCTVDNKGFIWLTDVA-------------LHQVFKTPYTYN  109 (115)
Q Consensus        56 ~~I~vfdp~~G~------~l~~~G--~g~f~~P~Gi~vd~~g~I~VtD~~-------------~h~V~~f~~~G~  109 (115)
                      +.|..|+..+++      ++..+.  .+....|+++++++||++||++-.             ..+|++++++|+
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~  179 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE  179 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC
Confidence            578888773231      233344  345668899999999999999532             368999999994

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=95.23  E-value=0.11  Score=37.55  Aligned_cols=53  Identities=13%  Similarity=0.121  Sum_probs=42.3

Q ss_pred             CCeEEEEeCCCCeEEeEecC---CCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGK---NKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~---g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      .+.|.++|..+|+.+..+..   +.-..|.+++++++|+ +|+++...++|+.+|.+
T Consensus       205 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  261 (353)
T 3vgz_A          205 DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR  261 (353)
T ss_dssp             TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred             CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            46788999888888776543   3455788899999887 89999888999999875

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.18  E-value=0.035  Score=42.47  Aligned_cols=52  Identities=17%  Similarity=0.169  Sum_probs=36.7

Q ss_pred             CCeEEEEeCCCCeE---------------EeEecCCCccCceeEEEcc-CCCEEEEeCCCCE--------EEEeCCCCCC
Q psy15750         55 VDTVLTLDKSTGLL---------------IDAWGKNKFYMPHGCTVDN-KGFIWLTDVALHQ--------VFKTPYTYNF  110 (115)
Q Consensus        55 ~~~I~vfdp~~G~~---------------l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~h~--------V~~f~~~G~f  110 (115)
                      .+.|+.+++ +|++               +..+|   +..|.|+++|+ +|++|++|.+.+.        +....+.+++
T Consensus       168 ~g~I~ri~~-dG~~p~~npf~~~~~~~~~i~a~G---~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~ny  243 (352)
T 2ism_A          168 GGKILRLTP-EGEPAPGNPFLGRRGARPEVYSLG---HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNY  243 (352)
T ss_dssp             SSEEEEECT-TSSBCTTCTTTTCTTSCTTEEEEC---CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBC
T ss_pred             ceEEEEEcC-CCCCCCCCcccCCCCCCccEEEEc---CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcC
Confidence            478999998 7732               12223   45699999998 8999999998775        6776665543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=95.17  E-value=0.084  Score=38.05  Aligned_cols=52  Identities=4%  Similarity=0.020  Sum_probs=41.9

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTYN  109 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G~  109 (115)
                      +.|.+||+++|+++..+-.+ ...| +++++++|+ +|+++....+|++++.+..
T Consensus        20 ~~v~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~   72 (331)
T 3u4y_A           20 RRISFFSTDTLEILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE   72 (331)
T ss_dssp             TEEEEEETTTCCEEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS
T ss_pred             CeEEEEeCcccceeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC
Confidence            78999999789987765532 3345 999999997 9999998899999998643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.94  E-value=0.0069  Score=47.56  Aligned_cols=50  Identities=14%  Similarity=0.119  Sum_probs=34.1

Q ss_pred             CeEEEEeCC-CCeEEe--EecCCCccCceeEEEcc-CCCEEEEe-CCCCEEEEeCCC
Q psy15750         56 DTVLTLDKS-TGLLID--AWGKNKFYMPHGCTVDN-KGFIWLTD-VALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~-~G~~l~--~~G~g~f~~P~Gi~vd~-~g~I~VtD-~~~h~V~~f~~~  107 (115)
                      +.|.+|+.. +|++..  .+  ..-..|-|+++|+ +|++||+. .+..+|.+|+|+
T Consensus       243 ~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          243 HKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             TEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             CeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            678888531 466532  22  1235899999999 59999975 455677777776

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=94.85  E-value=0.13  Score=38.39  Aligned_cols=53  Identities=11%  Similarity=-0.005  Sum_probs=41.8

Q ss_pred             CCCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCC
Q psy15750         52 PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        52 ~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G  108 (115)
                      ..+.+.+.++|+++.+++.++-.+.  .+.|++-| .+.+|++| +..++..+|++-
T Consensus        81 tw~~~~v~v~D~~tl~~~~ti~~~~--~Gwglt~d-g~~L~vSd-gs~~l~~iDp~t  133 (243)
T 3mbr_X           81 TWRNHEGFVYDLATLTPRARFRYPG--EGWALTSD-DSHLYMSD-GTAVIRKLDPDT  133 (243)
T ss_dssp             ESSSSEEEEEETTTTEEEEEEECSS--CCCEEEEC-SSCEEEEC-SSSEEEEECTTT
T ss_pred             EeeCCEEEEEECCcCcEEEEEeCCC--CceEEeeC-CCEEEEEC-CCCeEEEEeCCC
Confidence            3456899999998999998876542  56677765 46899998 588999999863

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.79  E-value=0.064  Score=41.09  Aligned_cols=31  Identities=10%  Similarity=0.187  Sum_probs=26.4

Q ss_pred             CccCceeEEEccCCCEEEE-eCCCCEEEEeCC
Q psy15750         76 KFYMPHGCTVDNKGFIWLT-DVALHQVFKTPY  106 (115)
Q Consensus        76 ~f~~P~Gi~vd~~g~I~Vt-D~~~h~V~~f~~  106 (115)
                      .+..|.++++++||.+||+ |....+|++..+
T Consensus       321 ~~~rp~~v~~~pdG~lyv~td~~~g~I~ri~~  352 (353)
T 2g8s_A          321 RGQRIRDVRTGPDGYLYVLTDESSGELLKVSP  352 (353)
T ss_dssp             GCCCEEEEEECTTSCEEEEECSTTEEEEEEEC
T ss_pred             CCCceeEEEECCCCcEEEEEeCCCCEEEEEeC
Confidence            3457999999999999996 778899998765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=94.63  E-value=0.064  Score=40.87  Aligned_cols=51  Identities=10%  Similarity=-0.042  Sum_probs=41.6

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~  107 (115)
                      .+.|.++|+++|+++++. -..-..+.|++++ .+.||+.++..+++++||++
T Consensus        74 ~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~-g~~Ly~ltw~~~~v~V~D~~  124 (268)
T 3nok_A           74 QGTLRQLSLESAQPVWME-RLGNIFAEGLASD-GERLYQLTWTEGLLFTWSGM  124 (268)
T ss_dssp             TTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC-SSCEEEEESSSCEEEEEETT
T ss_pred             CCEEEEEECCCCcEEeEE-CCCCcceeEEEEe-CCEEEEEEccCCEEEEEECC
Confidence            356899999999998887 4444456789997 46999999999999999975

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=94.45  E-value=0.13  Score=38.72  Aligned_cols=51  Identities=12%  Similarity=0.148  Sum_probs=39.6

Q ss_pred             CCCeEEEEeCCCCeEEeEecCCCccCceeEEEccC-CCEEEEeCCCCEEEEeCCCC
Q psy15750         54 SVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNK-GFIWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        54 ~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~-g~I~VtD~~~h~V~~f~~~G  108 (115)
                      ..+.+.++|+++++++.++--+   .|+|..+.+| +.+||+| +..++..+|++.
T Consensus        84 ~~~~v~viD~~t~~v~~~i~~g---~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t  135 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSNIKNFTHQ---MKDGWGLATDGKILYGSD-GTSILYEIDPHT  135 (266)
T ss_dssp             TCSEEEEEETTTTEEEEEEECC---SSSCCEEEECSSSEEEEC-SSSEEEEECTTT
T ss_pred             cCCEEEEEECCCCcEEEEEECC---CCCeEEEEECCCEEEEEC-CCCeEEEEECCC
Confidence            5589999999889999887544   4555555544 5799998 688999999875

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.43  E-value=0.059  Score=42.19  Aligned_cols=49  Identities=10%  Similarity=0.206  Sum_probs=37.0

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCC-CEEEEeCCCCEEEEeCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKG-FIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g-~I~VtD~~~h~V~~f~~~  107 (115)
                      .+.+..+||  +++.  .-...+..|.|++.++|| .+||+|...++|++|+.+
T Consensus       202 ~g~vyr~d~--~~~~--~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          202 WSFVTYYSP--NDVR--VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             CEEEEEECT--TCCE--EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             ccEEEEEEC--CeEE--EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            466777777  3321  112357899999999998 799999999999998854

>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A

Probab=94.17  E-value=0.098  Score=34.07  Aligned_cols=45  Identities=18%  Similarity=0.132  Sum_probs=31.8

Q ss_pred             eEEEeeeeecCc-cCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeE
Q psy15750         17 YVARVDGTSMQP-VCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDA   71 (115)
Q Consensus        17 ~~~~v~G~Sm~p-t~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~   71 (115)
                      ...+|+|-||.| +++.++     ....++    ...+.+++|.++.. +|++..+
T Consensus        28 ~~~~v~GdSM~p~~i~~Gd-----~v~vd~----~~~~~~gdivv~~~-~~~~~vK   73 (116)
T 1umu_A           28 YFVKASGDSMIDGGISDGD-----LLIVDS----AITASHGDIVIAAV-DGEFTVK   73 (116)
T ss_dssp             EEEECCSSTTGGGTCCTTC-----EEEEET----TSCCCTTCEEEEEE-TTEEEEE
T ss_pred             EEEEECCCCcCCCCCCCCC-----EEEEEc----CCCCCCCCEEEEEE-CCEEEEE
Confidence            468999999999 799887     333443    12467788999976 6765433

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=94.00  E-value=0.16  Score=37.87  Aligned_cols=56  Identities=14%  Similarity=0.081  Sum_probs=39.3

Q ss_pred             CCeEEEEeCC-CCeEEeEec---CCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC--CCC
Q psy15750         55 VDTVLTLDKS-TGLLIDAWG---KNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT--YNF  110 (115)
Q Consensus        55 ~~~I~vfdp~-~G~~l~~~G---~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~--G~f  110 (115)
                      .+.+.+|+.. +|++.....   ......||+++++++|+ +|++|.+.++|+.|+.+  |+.
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~  180 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV  180 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE
Confidence            3567777542 476654332   12345799999999996 88899888999988875  554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=93.88  E-value=0.14  Score=36.92  Aligned_cols=50  Identities=18%  Similarity=0.273  Sum_probs=39.0

Q ss_pred             CeEEEEeCCCCeE---EeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLL---IDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~---l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.+||.++|++   +..+-.+  ..|.+++++++|. +|+++...+.|..++.+
T Consensus       198 ~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~  251 (331)
T 3u4y_A          198 NSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQL  251 (331)
T ss_dssp             TEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred             CeEEEEECCCCcccceeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence            6788888766776   5554432  5688999999998 89998888889998876

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=93.85  E-value=0.21  Score=38.49  Aligned_cols=50  Identities=8%  Similarity=0.011  Sum_probs=40.2

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC--EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF--IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~--I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.++|.++++++.++--+.  .|+++++++||.  +|++..+.+.|.++|..
T Consensus       298 ~~V~VID~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          298 KEVTSVTGLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             CeEEEEECCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            579999998899988874333  699999999997  56666678889988875

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.66  E-value=0.24  Score=38.63  Aligned_cols=53  Identities=13%  Similarity=0.199  Sum_probs=39.2

Q ss_pred             CCCeEEEEeCCCCeE----------EeEecCCCccCceeEEEccCCCEEEEeCCC---CEEEEeCCCCCC
Q psy15750         54 SVDTVLTLDKSTGLL----------IDAWGKNKFYMPHGCTVDNKGFIWLTDVAL---HQVFKTPYTYNF  110 (115)
Q Consensus        54 ~~~~I~vfdp~~G~~----------l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~---h~V~~f~~~G~f  110 (115)
                      ..+.|+.+++ +|+.          +..+|   +..|.|++.|++|.+|++|++.   .++....+.+++
T Consensus       172 ~~G~IlRi~~-dG~ip~~nPf~~~~i~a~G---~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~ny  237 (347)
T 3das_A          172 LGGKILRMTP-DGEPAPGNPFPGSPVYSYG---HRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNY  237 (347)
T ss_dssp             STTCEEEECT-TSSBCTTCSSTTCCEEEBC---CSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBC
T ss_pred             CCCEEEEEeC-CCCccCCCCCCCCeEEeeC---CCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEe
Confidence            4689999999 8872          33444   4479999999999999999875   456665555554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=93.54  E-value=0.15  Score=37.88  Aligned_cols=53  Identities=11%  Similarity=0.164  Sum_probs=34.8

Q ss_pred             eEEEEeCCCCeEEeEecC---CCccCceeEEEccCCCEEEEeCC------CCEEEEeCCCCCC
Q psy15750         57 TVLTLDKSTGLLIDAWGK---NKFYMPHGCTVDNKGFIWLTDVA------LHQVFKTPYTYNF  110 (115)
Q Consensus        57 ~I~vfdp~~G~~l~~~G~---g~f~~P~Gi~vd~~g~I~VtD~~------~h~V~~f~~~G~f  110 (115)
                      .|.+||+++|++..-...   .....|..+++|++|++|+++..      ...+++++ +|++
T Consensus       110 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~  171 (326)
T 2ghs_A          110 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKV  171 (326)
T ss_dssp             EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEE
T ss_pred             CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcE
Confidence            466677655654322111   12346889999999999999753      46888888 6654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=93.35  E-value=0.3  Score=37.08  Aligned_cols=52  Identities=8%  Similarity=-0.201  Sum_probs=40.7

Q ss_pred             CCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCC
Q psy15750         53 ISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        53 i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G  108 (115)
                      .+.+.+.++|+++++++.++--+  ..+.|++-| .+.+|++| +..++..+|++.
T Consensus       113 w~~~~v~V~D~~Tl~~~~ti~~~--~eGwGLt~D-g~~L~vSd-Gs~~l~~iDp~T  164 (268)
T 3nok_A          113 WTEGLLFTWSGMPPQRERTTRYS--GEGWGLCYW-NGKLVRSD-GGTMLTFHEPDG  164 (268)
T ss_dssp             SSSCEEEEEETTTTEEEEEEECS--SCCCCEEEE-TTEEEEEC-SSSEEEEECTTT
T ss_pred             ccCCEEEEEECCcCcEEEEEeCC--CceeEEecC-CCEEEEEC-CCCEEEEEcCCC
Confidence            35689999999899999887643  245677765 36899998 688999999874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=92.99  E-value=0.54  Score=34.52  Aligned_cols=51  Identities=22%  Similarity=0.296  Sum_probs=42.0

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G  108 (115)
                      +.|.++|..+|+.+..+..+.  .|.+++..++|+ +|+++.....|+.+|.+.
T Consensus        54 ~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~  105 (391)
T 1l0q_A           54 NDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS  105 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEEECCCCEEEEEECCC
Confidence            689999988899888776544  788999998887 788888888899988764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=92.99  E-value=0.36  Score=36.50  Aligned_cols=51  Identities=6%  Similarity=-0.019  Sum_probs=40.0

Q ss_pred             CCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCC
Q psy15750         53 ISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        53 i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~  107 (115)
                      .+.+.+.++|+++++++.++--+.  .+.|++-| .+.+|++| +..++..+|++
T Consensus       104 w~~~~v~v~D~~t~~~~~ti~~~~--eG~glt~d-g~~L~~Sd-Gs~~i~~iDp~  154 (262)
T 3nol_A          104 WKNGLGFVWNIRNLRQVRSFNYDG--EGWGLTHN-DQYLIMSD-GTPVLRFLDPE  154 (262)
T ss_dssp             SSSSEEEEEETTTCCEEEEEECSS--CCCCEEEC-SSCEEECC-SSSEEEEECTT
T ss_pred             eeCCEEEEEECccCcEEEEEECCC--CceEEecC-CCEEEEEC-CCCeEEEEcCC
Confidence            355899999998999998876432  55677765 46899998 57899999987

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=92.45  E-value=0.21  Score=39.88  Aligned_cols=50  Identities=12%  Similarity=0.089  Sum_probs=40.7

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC--EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF--IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~--I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.|+|.++++.+.++--+.  .|+|+++++||+  +|++....+.|.++|..
T Consensus       350 ~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          350 RFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             EEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence            579999999999988874222  699999999987  77778778888888864

>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1

Probab=92.25  E-value=0.38  Score=31.11  Aligned_cols=42  Identities=17%  Similarity=0.306  Sum_probs=30.4

Q ss_pred             eEEEeeeeecC------ccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCC-eE
Q psy15750         17 YVARVDGTSMQ------PVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTG-LL   68 (115)
Q Consensus        17 ~~~~v~G~Sm~------pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G-~~   68 (115)
                      ...+|+|-||.      |+++.++     ....++    ...+..++|+++.. ++ +.
T Consensus        14 f~~~V~GdSM~~~~g~~p~i~~Gd-----~v~Vd~----~~~~~~Gdivv~~~-~~~~~   62 (109)
T 1kca_A           14 FWLEVEGNSMTAPTGSKPSFPDGM-----LILVDP----EQAVEPGDFCIARL-GGDEF   62 (109)
T ss_dssp             EEEECCSSTTCCCTTCSSCCCTTC-----EEEEET----TSCCCTTCEEEEEC-STTCE
T ss_pred             EEEEEeCcCcCCCCCCCCeeCCCC-----EEEEec----CCcCCCCCEEEEEE-CCCeE
Confidence            45799999999      9999987     444443    12477789999976 44 54

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=92.21  E-value=0.47  Score=34.49  Aligned_cols=53  Identities=19%  Similarity=0.222  Sum_probs=36.3

Q ss_pred             CCeEEEEeCC-CCeEEeE--ecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         55 VDTVLTLDKS-TGLLIDA--WGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        55 ~~~I~vfdp~-~G~~l~~--~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      .+.|.+|+.. +|++...  .....-..|++++.+++|+ +|+++...+++..++.+
T Consensus       161 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  217 (347)
T 3hfq_A          161 SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYD  217 (347)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            3678888764 4655322  1111223688999999998 89998888888877654

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=92.06  E-value=0.18  Score=42.39  Aligned_cols=35  Identities=26%  Similarity=0.418  Sum_probs=29.4

Q ss_pred             CccCceeEEEccCCCEEE-EeCC-----------CCEEEEeCCC-CCC
Q psy15750         76 KFYMPHGCTVDNKGFIWL-TDVA-----------LHQVFKTPYT-YNF  110 (115)
Q Consensus        76 ~f~~P~Gi~vd~~g~I~V-tD~~-----------~h~V~~f~~~-G~f  110 (115)
                      .|..|.++++|++|+||+ ||..           +.+|+.++++ |+.
T Consensus       474 ~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel  521 (592)
T 4a9v_A          474 MFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI  521 (592)
T ss_dssp             CCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCE
T ss_pred             ccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeE
Confidence            589999999999999999 8863           4589999984 553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=91.82  E-value=0.13  Score=37.63  Aligned_cols=50  Identities=14%  Similarity=-0.007  Sum_probs=35.4

Q ss_pred             EEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCC--CCEEEEeCCC
Q psy15750         58 VLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVA--LHQVFKTPYT  107 (115)
Q Consensus        58 I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~--~h~V~~f~~~  107 (115)
                      +..||+++|++...--......|.+++++++|.+|+++..  ..+|+.|+.+
T Consensus        20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~   71 (347)
T 3hfq_A           20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQID   71 (347)
T ss_dssp             EEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEec
Confidence            5566876787754211223468999999999999998753  6788888764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=91.38  E-value=0.34  Score=38.34  Aligned_cols=50  Identities=12%  Similarity=0.134  Sum_probs=40.8

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC--EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF--IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~--I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.++|.+++++++++--+.  -|+++++++||.  +|+++.....|..+|..
T Consensus       311 ~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          311 RFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             EEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            579999999999998865432  577999999985  78888888889888874

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.30  E-value=0.2  Score=38.33  Aligned_cols=34  Identities=9%  Similarity=-0.018  Sum_probs=29.5

Q ss_pred             CccCceeEEEccCCC-EEEEeCCCCEEEEeCCCCCC
Q psy15750         76 KFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        76 ~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G~f  110 (115)
                      .+..|++++.+++|+ +||++.. .+|++++++|+.
T Consensus        16 ~l~~P~~i~~~pdG~~l~V~e~~-G~i~~~~~~g~~   50 (353)
T 2g8s_A           16 KLDHPWALAFLPDNHGMLITLRG-GELRHWQAGKGL   50 (353)
T ss_dssp             EESSEEEEEECSTTCCEEEEETT-TEEEEEETTTEE
T ss_pred             CCCCcEEEEEcCCCCEEEEEeCC-ceEEEEeCCCce
Confidence            467899999999999 9999974 799999988764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=91.28  E-value=0.85  Score=32.59  Aligned_cols=52  Identities=8%  Similarity=0.056  Sum_probs=36.0

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      +.+..+|+ +|+.+.++.... ..+..+.+|++|+|||... ...+++++++|+.
T Consensus       235 ~gl~~~~~-~g~~~~~~~~~~-~~~~~~~~~~~g~l~v~t~-~ggl~~~d~~g~~  286 (330)
T 3hxj_A          235 GHLYAINP-DGTEKWRFKTGK-RIESSPVIGNTDTIYFGSY-DGHLYAINPDGTE  286 (330)
T ss_dssp             TEEEEECT-TSCEEEEEECSS-CCCSCCEECTTSCEEEECT-TCEEEEECTTSCE
T ss_pred             CeEEEECC-CCCEeEEeeCCC-CccccceEcCCCeEEEecC-CCCEEEECCCCcE
Confidence            56777787 777766554321 2334568888999999854 4579999988764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=91.08  E-value=0.51  Score=36.76  Aligned_cols=51  Identities=14%  Similarity=-0.161  Sum_probs=40.1

Q ss_pred             CeEEEEeCCCCeEEeEe--c-CCC---ccCceeEEEccCC-CEEEEeCC-CCEEEE--eCC
Q psy15750         56 DTVLTLDKSTGLLIDAW--G-KNK---FYMPHGCTVDNKG-FIWLTDVA-LHQVFK--TPY  106 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~--G-~g~---f~~P~Gi~vd~~g-~I~VtD~~-~h~V~~--f~~  106 (115)
                      +.|.++|+.+++++.++  | .+.   ...||++++++|| .+||++.. .+.|..  .|.
T Consensus        96 ~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~  156 (368)
T 1mda_H           96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA  156 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT
T ss_pred             CEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEch
Confidence            67999999999999886  2 122   2579999999988 78999765 567777  665

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=91.04  E-value=0.38  Score=38.37  Aligned_cols=52  Identities=15%  Similarity=0.030  Sum_probs=40.7

Q ss_pred             CeEEEEeCCCCeEEeEe--c-CCCc---cCceeEEEccCC-CEEEEeCC-CCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAW--G-KNKF---YMPHGCTVDNKG-FIWLTDVA-LHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~--G-~g~f---~~P~Gi~vd~~g-~I~VtD~~-~h~V~~f~~~  107 (115)
                      +.|.++|+.+++++.++  + .+.+   ..|+++++++|| .+||++.. .++|.++|..
T Consensus       149 ~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~  208 (426)
T 3c75_H          149 DYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLE  208 (426)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred             CEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECC
Confidence            67999999899998775  3 2232   579999999988 68999765 6788888765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=90.99  E-value=0.8  Score=34.52  Aligned_cols=47  Identities=13%  Similarity=0.065  Sum_probs=37.5

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.++|.++++.+.++--+.   |++++++++|+ +|++..  ..|.++|.+
T Consensus       286 ~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~--~~v~v~D~~  333 (361)
T 2oiz_A          286 AEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG--GNVNVYDIS  333 (361)
T ss_dssp             SEEEEEETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS--SCEEEEECS
T ss_pred             ceEEEEECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC--CeEEEEECC
Confidence            589999998999988876555   99999999875 567653  788888754

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=90.93  E-value=0.99  Score=36.96  Aligned_cols=49  Identities=12%  Similarity=0.039  Sum_probs=39.9

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.++|.++++++.++..+.  .||++++.+||. +||++ ....|.++|..
T Consensus       177 ~~V~viD~~t~~v~~~i~~g~--~p~~v~~SpDGr~lyv~~-~dg~V~viD~~  226 (567)
T 1qks_A          177 GQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIG-RDGKVNMIDLW  226 (567)
T ss_dssp             TEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEE-TTSEEEEEETT
T ss_pred             CeEEEEECCCCeEEEEEeCCC--CccceEECCCCCEEEEEc-CCCeEEEEECC
Confidence            789999998899998876443  699999999885 68886 35689999873

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=90.74  E-value=0.73  Score=36.68  Aligned_cols=40  Identities=23%  Similarity=0.361  Sum_probs=31.8

Q ss_pred             CCeEEEEeCCCCeE-------------EeEecCCCccCceeEEEccCCCEEEEeCCC
Q psy15750         55 VDTVLTLDKSTGLL-------------IDAWGKNKFYMPHGCTVDNKGFIWLTDVAL   98 (115)
Q Consensus        55 ~~~I~vfdp~~G~~-------------l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~   98 (115)
                      .+.|+.+++ +|++             +-++|   +..|.|++.|++|.+|++|.+.
T Consensus       196 ~G~IlRi~~-dG~ip~~Npf~~~~~~ei~a~G---~RNp~gla~dp~G~L~~~d~g~  248 (454)
T 1cru_A          196 MGKVLRLNL-DGSIPKDNPSFNGVVSHIYTLG---HRNPQGLAFTPNGKLLQSEQGP  248 (454)
T ss_dssp             SSEEEEECT-TSCCCTTCCEETTEECSEEEBC---CSEEEEEEECTTSCEEEEEECS
T ss_pred             CeeEEEEeC-CCCCCCCCCCCCCCcceEEEEC---CCCcceEEECCCCCEEEEecCC
Confidence            689999999 8872             23333   4579999999999999999864

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=90.72  E-value=1.2  Score=31.56  Aligned_cols=49  Identities=16%  Similarity=0.132  Sum_probs=36.7

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.+||.++++.+..+..+  ..|.+++.+++|+ +|++ ....+|..++.+
T Consensus       260 ~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~-~~~~~i~v~d~~  309 (337)
T 1pby_B          260 NVLESFDLEKNASIKRVPLP--HSYYSVNVSTDGSTVWLG-GALGDLAAYDAE  309 (337)
T ss_dssp             SEEEEEETTTTEEEEEEECS--SCCCEEEECTTSCEEEEE-SBSSEEEEEETT
T ss_pred             CeEEEEECCCCcCcceecCC--CceeeEEECCCCCEEEEE-cCCCcEEEEECc
Confidence            57888888777777665433  3588999999987 7777 457889998875

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=90.60  E-value=0.93  Score=32.39  Aligned_cols=51  Identities=12%  Similarity=0.144  Sum_probs=31.2

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYN  109 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~  109 (115)
                      +.+..+|+ +|+.+.+.-.+. .....+++|++|+||+... ...+++++++|+
T Consensus       195 ~~l~~~d~-~g~~~~~~~~~~-~~~~~~~~~~~g~l~v~t~-~~gl~~~~~~g~  245 (330)
T 3hxj_A          195 DKVYAINP-DGTEKWNFYAGY-WTVTRPAISEDGTIYVTSL-DGHLYAINPDGT  245 (330)
T ss_dssp             SSEEEECT-TSCEEEEECCSS-CCCSCCEECTTSCEEEEET-TTEEEEECTTSC
T ss_pred             CEEEEECC-CCcEEEEEccCC-cceeceEECCCCeEEEEcC-CCeEEEECCCCC
Confidence            35666675 666655443221 2344667888888888753 456777777664

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=90.56  E-value=0.8  Score=36.88  Aligned_cols=48  Identities=6%  Similarity=0.061  Sum_probs=39.2

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPY  106 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~  106 (115)
                      +.|.++|..+|+++.++-.+.-  ||+++++++|+ +|+++.. ..|.++|.
T Consensus       159 ~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d-~~V~v~D~  207 (543)
T 1nir_A          159 GQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRD-ARIDMIDL  207 (543)
T ss_dssp             TEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETT-SEEEEEET
T ss_pred             CeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCC-CeEEEEEC
Confidence            6899999988999888764432  99999999885 6787766 88999988

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=90.43  E-value=0.74  Score=34.28  Aligned_cols=52  Identities=13%  Similarity=0.049  Sum_probs=39.2

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCC-CEEEEeCCCCEEEEeCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKG-FIWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g-~I~VtD~~~h~V~~f~~~G  108 (115)
                      .+.|.+||..+|+.+......  ..|.+++.+++| .+|++.....+++.++.+.
T Consensus       282 dg~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~  334 (433)
T 3bws_A          282 GGRLGIYSMDKEKLIDTIGPP--GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE  334 (433)
T ss_dssp             CEEEEEEETTTTEEEEEEEEE--ECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred             CCeEEEEECCCCcEEeeccCC--CCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence            357778887677776665322  267889999988 5899988899999998763

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=90.33  E-value=1.8  Score=31.69  Aligned_cols=50  Identities=14%  Similarity=0.187  Sum_probs=38.4

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.++|.++++.+..+..+  ..|.+++..++|+ +|++....++|+.++..
T Consensus        96 ~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  146 (391)
T 1l0q_A           96 STLSVIDTTSNTVAGTVKTG--KSPLGLALSPDGKKLYVTNNGDKTVSVINTV  146 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEECCCCeEEEEEeCC--CCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            67888888677776665432  2578999998887 77898888999999864

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=90.23  E-value=0.34  Score=38.59  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=30.1

Q ss_pred             CccCceeEEEccCCCEEEEeCCCCEEEEeCCC-CCC
Q psy15750         76 KFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT-YNF  110 (115)
Q Consensus        76 ~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~-G~f  110 (115)
                      .+..|.+++++++|++||++....+|++++++ |+.
T Consensus        25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~   60 (454)
T 1cru_A           25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSV   60 (454)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE
Confidence            47789999999999999999888899999764 654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=89.49  E-value=0.35  Score=37.71  Aligned_cols=50  Identities=6%  Similarity=-0.035  Sum_probs=38.2

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeC-CCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDV-ALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~-~~h~V~~f~~~  107 (115)
                      +.+.|+|.++++.+.++--+.  .|+|+++.+||. +||+.. ..+.|.++|..
T Consensus       294 ~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          294 ENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             CCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence            356688888888877653222  699999999986 899877 68888888764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=88.94  E-value=2.4  Score=29.89  Aligned_cols=52  Identities=12%  Similarity=-0.015  Sum_probs=34.3

Q ss_pred             CeEEEEeCCC-CeEEeE----ecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKST-GLLIDA----WGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~-G~~l~~----~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.+||..+ |++...    +-...-..|.+++.+++|. +|+++....++..++.+
T Consensus       151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~  208 (343)
T 1ri6_A          151 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK  208 (343)
T ss_dssp             TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            5666766533 544321    1111223688899999997 88998888889888864

>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A

Probab=88.84  E-value=0.7  Score=32.41  Aligned_cols=45  Identities=16%  Similarity=0.171  Sum_probs=31.1

Q ss_pred             eEEEeeeeecCcc-CCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeE
Q psy15750         17 YVARVDGTSMQPV-CPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDA   71 (115)
Q Consensus        17 ~~~~v~G~Sm~pt-~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~   71 (115)
                      ...+|+|-||.|+ ++.++  .+   ..++    ...+..++|.++.- +|++..+
T Consensus       111 ~~~~v~GdSM~p~~i~~Gd--~v---~vd~----~~~~~~G~i~v~~~-~~~~~vK  156 (202)
T 1jhf_A          111 FLLRVSGMSMKDIGIMDGD--LL---AVHK----TQDVRNGQVVVARI-DDEVTVK  156 (202)
T ss_dssp             EEEECCSSTTGGGTCCTTC--EE---EEEE----CSCCCTTSEEEEEE-TTEEEEE
T ss_pred             EEEEECCCCCCCCCCCCCC--EE---EEec----cCCcCCCeEEEEEE-CCEEEEE
Confidence            4688999999999 88886  33   3333    12467788888876 6765433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=88.79  E-value=1.8  Score=32.13  Aligned_cols=51  Identities=20%  Similarity=0.208  Sum_probs=39.1

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCE-EEEeCCCCEEEEeCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFI-WLTDVALHQVFKTPYTY  108 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I-~VtD~~~h~V~~f~~~G  108 (115)
                      +.|.++|.++++.+..+..  -..|.+++..++|+. ++++...++|..|+.++
T Consensus       381 g~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          381 GKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             eEEEEEECCCCcEEEEecC--CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            4888998878888777654  236889999998865 56777788999887664

>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A

Probab=88.69  E-value=0.91  Score=30.10  Aligned_cols=43  Identities=14%  Similarity=0.237  Sum_probs=30.4

Q ss_pred             eEEEeeeeecC------ccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCC-eEE
Q psy15750         17 YVARVDGTSMQ------PVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTG-LLI   69 (115)
Q Consensus        17 ~~~~v~G~Sm~------pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G-~~l   69 (115)
                      ...+|+|-||.      |+++.++     ....++    ...+++++++++.. ++ ++.
T Consensus        45 f~~~V~GdSM~~~~g~~p~i~~Gd-----~v~vd~----~~~~~~Gdivv~~~-~~~~~~   94 (133)
T 2hnf_A           45 FWLEVEGNSMTTPTGSKTSFPDGM-----LILVDP----EQAVEPGDFCIARL-GGDEFT   94 (133)
T ss_dssp             EEEECCSSTTCCC---CCCCCTTC-----EEEEET----TSCCCTTSEEEEEE-TTTEEE
T ss_pred             EEEEEeCCCcCCCcCCCCccCCCC-----EEEEcc----CCCCCCCCEEEEEE-CCCEEE
Confidence            45899999999      9999997     444443    23567788888865 44 543

>3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.75A {Bacteroides vulgatus}

Probab=88.18  E-value=1.3  Score=34.83  Aligned_cols=54  Identities=6%  Similarity=0.056  Sum_probs=44.5

Q ss_pred             eEEEEeCCCCeEEeEec-----CCCccCce-eEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         57 TVLTLDKSTGLLIDAWG-----KNKFYMPH-GCTVDNKGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        57 ~I~vfdp~~G~~l~~~G-----~g~f~~P~-Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      .|.++|.++++++.++-     ......++ |+.+-..+.||+++...+.++.++.+|+.
T Consensus        53 ~i~~iDL~~~kl~k~i~~ekEGPNgi~~~~~~~~i~~~DsI~i~~~~~~~i~l~n~~G~~  112 (369)
T 3s9j_A           53 DIVIFDIENQQIAKRIPLHKTGPNGLPAVFGSRPSPDSQYILVAQNNISRLSSINSQGEI  112 (369)
T ss_dssp             EEEEEETTTTEEEEEEECBSSSTTBCTTCCCEEESSSTTSEEEEEGGGTEEEEECTTCCE
T ss_pred             cEEEEECCCCceeeeeccccCCCCCcccceeeEEecCCCEEEEEeCCcceEEEECCCceE
Confidence            99999998999886654     44555675 47788899999999999999999999974

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=87.85  E-value=0.76  Score=35.74  Aligned_cols=34  Identities=9%  Similarity=0.022  Sum_probs=30.0

Q ss_pred             CccCceeEEEccCCCEEEEeCCCCEEEEeCCC-CC
Q psy15750         76 KFYMPHGCTVDNKGFIWLTDVALHQVFKTPYT-YN  109 (115)
Q Consensus        76 ~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~-G~  109 (115)
                      .+..|.++++.++|.+||++....+|++++++ |+
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~   64 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR   64 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc
Confidence            57789999999999999999888999999875 44

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=87.75  E-value=2.4  Score=30.93  Aligned_cols=31  Identities=6%  Similarity=-0.052  Sum_probs=24.0

Q ss_pred             ccCceeEEEccCCC-EEEEeCC-CCEEEEeCCC
Q psy15750         77 FYMPHGCTVDNKGF-IWLTDVA-LHQVFKTPYT  107 (115)
Q Consensus        77 f~~P~Gi~vd~~g~-I~VtD~~-~h~V~~f~~~  107 (115)
                      +..|.+++++++|+ +|+++.. .+++..|+.+
T Consensus       258 ~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          258 AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             CCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             CCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            44577999999997 7899887 7777776653

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=87.64  E-value=2.2  Score=33.72  Aligned_cols=55  Identities=13%  Similarity=0.080  Sum_probs=42.0

Q ss_pred             CCCCeEEEEeCCCC--eEEeEecCC--C---ccCceeEEEc-c-------CCCEEEEeCCCCEEEEeCCC
Q psy15750         53 ISVDTVLTLDKSTG--LLIDAWGKN--K---FYMPHGCTVD-N-------KGFIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        53 i~~~~I~vfdp~~G--~~l~~~G~g--~---f~~P~Gi~vd-~-------~g~I~VtD~~~h~V~~f~~~  107 (115)
                      +..+.+++||.+++  ++++++--.  .   =.+-..++|| .       ++.+||+|.+..-+.+||..
T Consensus       120 ~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~  189 (381)
T 3q6k_A          120 SHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHK  189 (381)
T ss_dssp             CCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECC
Confidence            45689999999999  999887621  1   1234578999 3       57899999998888888865

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=87.64  E-value=2.3  Score=32.51  Aligned_cols=50  Identities=16%  Similarity=-0.103  Sum_probs=37.7

Q ss_pred             CeEEEEeCCCCeEEeEecC---CC---ccCceeEEEccCCC-EEEEeCC-CCEEEEeC
Q psy15750         56 DTVLTLDKSTGLLIDAWGK---NK---FYMPHGCTVDNKGF-IWLTDVA-LHQVFKTP  105 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~---g~---f~~P~Gi~vd~~g~-I~VtD~~-~h~V~~f~  105 (115)
                      +.|.+||+.+++++.++--   +.   -..|+++++++||. +||+... .++|..+|
T Consensus        97 ~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD  154 (373)
T 2mad_H           97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV  154 (373)
T ss_pred             CeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE
Confidence            6788999977888776521   22   24799999999875 7888764 68899888

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=87.55  E-value=0.94  Score=34.14  Aligned_cols=52  Identities=13%  Similarity=0.075  Sum_probs=38.4

Q ss_pred             CeEEEEeCCCCeEEeEec--CCCc---cCceeEEEccCC-CEEEEeCC-CCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWG--KNKF---YMPHGCTVDNKG-FIWLTDVA-LHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G--~g~f---~~P~Gi~vd~~g-~I~VtD~~-~h~V~~f~~~  107 (115)
                      +.|.+||..+++.+.++-  .+.+   ..|++++++++| .+||+... ..+|.++|.+
T Consensus        81 ~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~  139 (361)
T 2oiz_A           81 DVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA  139 (361)
T ss_dssp             EEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT
T ss_pred             CEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC
Confidence            469999997788877653  2222   479999999988 57888765 5777777664

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=87.36  E-value=1.1  Score=35.41  Aligned_cols=50  Identities=18%  Similarity=0.256  Sum_probs=36.2

Q ss_pred             CCCCCCCeEEEEeCCCC-eE----EeEec-CCCccCceeEEEccCCCEEEEeCCCCE
Q psy15750         50 KRPISVDTVLTLDKSTG-LL----IDAWG-KNKFYMPHGCTVDNKGFIWLTDVALHQ  100 (115)
Q Consensus        50 ~~~i~~~~I~vfdp~~G-~~----l~~~G-~g~f~~P~Gi~vd~~g~I~VtD~~~h~  100 (115)
                      ++.+.++.|..+++ ++ ++    ....- ...+..|.++++|.+|++||.-+..|.
T Consensus       291 ~~~~~~~aI~~w~~-~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~l~~  346 (381)
T 3q6k_A          291 FAEANTKQVSCWNT-QKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNGFPP  346 (381)
T ss_dssp             EEESSSSEEEEEET-TSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECSCCS
T ss_pred             EEeccCCeEEEEeC-CCCccccCceEEEEECCCccccCeEEECCCCeEEEEECcchH
Confidence            44566689999998 66 32    11211 237889999999999999999776654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=85.94  E-value=2.8  Score=31.01  Aligned_cols=51  Identities=12%  Similarity=0.089  Sum_probs=34.7

Q ss_pred             CCeEEEEeCC-CCeEEe--Eec-CCCccCceeEEEccCC-CEEEEeCCCCEEEEeC
Q psy15750         55 VDTVLTLDKS-TGLLID--AWG-KNKFYMPHGCTVDNKG-FIWLTDVALHQVFKTP  105 (115)
Q Consensus        55 ~~~I~vfdp~-~G~~l~--~~G-~g~f~~P~Gi~vd~~g-~I~VtD~~~h~V~~f~  105 (115)
                      .+.|.+|+.. +|++..  ..- ...-..|.+++++++| .+|+++...++|..|+
T Consensus       166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~  221 (365)
T 1jof_A          166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEE
Confidence            3689999875 577632  221 0112469999999999 5789887777777664

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=85.77  E-value=2.2  Score=30.13  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=21.8

Q ss_pred             ceeEEEccCCC-EEEEeCCCCEEEEeC
Q psy15750         80 PHGCTVDNKGF-IWLTDVALHQVFKTP  105 (115)
Q Consensus        80 P~Gi~vd~~g~-I~VtD~~~h~V~~f~  105 (115)
                      |.+++.+++|+ +|+++...+.+..|+
T Consensus       279 ~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          279 PRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             cceEEECCCCCEEEEecCCCCeEEEEE
Confidence            88999999987 888887778888773

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=85.66  E-value=4.6  Score=30.06  Aligned_cols=56  Identities=5%  Similarity=0.059  Sum_probs=41.1

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      +.|.+||.++|+.+.++-++.-..-..++..|||...++-...+.|..++-..++.
T Consensus       291 ~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~  346 (365)
T 4h5i_A          291 NSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYA  346 (365)
T ss_dssp             SCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTT
T ss_pred             CEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence            56778887677777776444333445788889999999988889999888654443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=85.52  E-value=2.2  Score=33.61  Aligned_cols=52  Identities=15%  Similarity=0.019  Sum_probs=39.4

Q ss_pred             CeEEEEeCCCCeEEeEe--cCCC----ccCceeEEEccCCC-EEEEeCC-CCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAW--GKNK----FYMPHGCTVDNKGF-IWLTDVA-LHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~--G~g~----f~~P~Gi~vd~~g~-I~VtD~~-~h~V~~f~~~  107 (115)
                      +.|.+||+.+++++.++  +.|.    -..|+++++++||. +||++.. .+.|.+.|..
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~  168 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE  168 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC
Confidence            56999999999988876  3211    24799999999885 7999764 6778777664

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=85.12  E-value=1  Score=37.75  Aligned_cols=50  Identities=18%  Similarity=0.157  Sum_probs=36.6

Q ss_pred             CeEEEEeCCC--CeE-EeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKST--GLL-IDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~--G~~-l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      +.|-|+|.++  ++. ++.+--+  ..|||+.+.+||. +||+|....+|.++|.+
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~  307 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  307 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             CcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEEeCCCCCeEEEEECc
Confidence            4588888855  444 3332111  2899999999996 89999999999988765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=85.10  E-value=3.2  Score=29.45  Aligned_cols=50  Identities=16%  Similarity=0.117  Sum_probs=37.8

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCC-CEEEEeCCCCEEEEeCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKG-FIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g-~I~VtD~~~h~V~~f~~~  107 (115)
                      .+.|.+||.++++++..+-.+  ..|++++.+++| .+|++ ...++|..++.+
T Consensus       274 ~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~-~~~~~v~v~d~~  324 (349)
T 1jmx_B          274 LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLG-GTFNDLAVFNPD  324 (349)
T ss_dssp             ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSSCEEEE-SBSSEEEEEETT
T ss_pred             cCeEEEEECccCeEEEEEcCC--CCccceEECCCCCEEEEe-cCCCeEEEEecc
Confidence            468999999888887776433  258899999886 57776 345889988875

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=85.04  E-value=3.8  Score=29.77  Aligned_cols=27  Identities=7%  Similarity=0.065  Sum_probs=22.0

Q ss_pred             cCceeEEEccCCC-EEEEeCCCCEEEEe
Q psy15750         78 YMPHGCTVDNKGF-IWLTDVALHQVFKT  104 (115)
Q Consensus        78 ~~P~Gi~vd~~g~-I~VtD~~~h~V~~f  104 (115)
                      ..|++++++++|+ +|+++...++|..|
T Consensus       306 ~~~~~~~~spdg~~l~~~~~~~~~v~v~  333 (361)
T 3scy_A          306 IHPRNFIITPNGKYLLVACRDTNVIQIF  333 (361)
T ss_dssp             SCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             CCCceEEECCCCCEEEEEECCCCCEEEE
Confidence            3689999999997 88998777777764

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=84.63  E-value=1.7  Score=30.54  Aligned_cols=46  Identities=13%  Similarity=0.079  Sum_probs=31.3

Q ss_pred             eeEEEeeeeec-CccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeE
Q psy15750         16 GYVARVDGTSM-QPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDA   71 (115)
Q Consensus        16 ~~~~~v~G~Sm-~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~   71 (115)
                      ....+|+|-|| +|++..++     ...++.    ...+.+++|+++.- +|+...+
T Consensus       109 ~f~l~v~GdSM~~p~i~~GD-----~viv~~----~~~~~~G~ivv~~~-~~~~~vK  155 (196)
T 3k2z_A          109 HFLLKVKGESMIEEHICDGD-----LVLVRR----QDWAQNGDIVAAMV-DGEVTLA  155 (196)
T ss_dssp             EEEEECCSSTTGGGTCCTTC-----EEEEEE----CSCCCTTCEEEEEE-TTEEEEE
T ss_pred             EEEEEEeCCCcCCCCCCCCC-----EEEEec----cCcCCCCCEEEEEE-CCcEEEE
Confidence            34589999999 69999988     333333    13456788888876 6665433

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=83.23  E-value=2  Score=34.45  Aligned_cols=50  Identities=12%  Similarity=-0.025  Sum_probs=34.8

Q ss_pred             CeEEEEeCCCCeEEe--EecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLID--AWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~--~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.++|..+++.+.  ++..+  ..||+++.+++|. +|++....++|.++|.+
T Consensus       302 g~i~vvd~~~~~~l~~~~i~~~--~~~~~~~~spdg~~l~va~~~~~~v~v~D~~  354 (543)
T 1nir_A          302 GKVLLVNYKDIDNLTVTSIGAA--PFLHDGGWDSSHRYFMTAANNSNKVAVIDSK  354 (543)
T ss_dssp             TEEEEEECTTSSSCEEEEEECC--SSCCCEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             CeEEEEEecCCCcceeEEeccC--cCccCceECCCCCEEEEEecCCCeEEEEECC
Confidence            567777664444322  33322  3699999999998 78888888889888865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.09
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.89
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.87
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.79
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.42
d1b12a_	247	Type 1 signal peptidase {Escherichia coli [TaxId:	98.36
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.89
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.81
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.65
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.62
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.52
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.51
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.36
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.33
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.31
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.3
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.67
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	96.58
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.34
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.4
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	93.01
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	92.62
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	92.3
d1jhfa2	126	LexA C-terminal domain {Escherichia coli [TaxId: 5	91.53
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	91.42
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	91.39
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	90.66
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	90.58
d1f39a_	101	lambda repressor C-terminal domain {Bacteriophage	90.46
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	89.74
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	89.5
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	89.42
d1umua_	105	UmuD' {Escherichia coli [TaxId: 562]}	87.89
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	84.52
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	84.27
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	83.38
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	82.53

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.09  E-value=1.2e-10  Score=84.89  Aligned_cols=55  Identities=15%  Similarity=0.184  Sum_probs=50.1

Q ss_pred             CCeEEEEeCCCCeEEeEec-CCCccCceeEEEccCCCEEEEeCC-CCEEEEeCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWG-KNKFYMPHGCTVDNKGFIWLTDVA-LHQVFKTPYTYNF  110 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G-~g~f~~P~Gi~vd~~g~I~VtD~~-~h~V~~f~~~G~f  110 (115)
                      .+.|.+||+ +|+++.++| .+.+..|+||++|++|+|||+|.. +++|.+|+++|++
T Consensus       177 ~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~  233 (279)
T d1q7fa_         177 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQL  233 (279)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCE
T ss_pred             ccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCE
Confidence            478999999 999999998 478999999999999999999976 5689999999986

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.89  E-value=7.9e-10  Score=80.51  Aligned_cols=44  Identities=20%  Similarity=0.311  Sum_probs=39.6

Q ss_pred             eEEeEec-----CCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         67 LLIDAWG-----KNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        67 ~~l~~~G-----~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      .++++||     .++|..|+|+++|++|+|||+|..+|+|++|+++|++
T Consensus         7 ~~~~~~G~~G~~~g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~   55 (279)
T d1q7fa_           7 IYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF   55 (279)
T ss_dssp             CEEEEECCBSSSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE
T ss_pred             EEEeecCCCcCCCCeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCE
Confidence            3567887     3689999999999999999999999999999999975

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.87  E-value=2.6e-09  Score=76.91  Aligned_cols=54  Identities=20%  Similarity=0.209  Sum_probs=49.4

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      +.|..|++ +|+....+....+..|+|+++|++|+|||+|..+|+|+++++++..
T Consensus       161 ~~i~~~d~-~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~  214 (260)
T d1rwia_         161 NRVVKLEA-ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  214 (260)
T ss_dssp             TEEEEECT-TTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC
T ss_pred             cccccccc-ccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe
Confidence            68999998 8888888877889999999999999999999999999999998865

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.79  E-value=3e-09  Score=76.62  Aligned_cols=55  Identities=15%  Similarity=0.132  Sum_probs=47.9

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      ++.|..|++ ++..........+..|+||++|++|+|||+|..+|+|.+++..|+.
T Consensus       202 ~~~i~~~~~-~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~~~  256 (260)
T d1rwia_         202 TNQVVKLLA-GSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  256 (260)
T ss_dssp             TTEEEEECT-TCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCEEEEEeC-CCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCCCc
Confidence            378999998 7777666666778999999999999999999999999999988754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.42  E-value=1.9e-07  Score=69.12  Aligned_cols=55  Identities=13%  Similarity=0.205  Sum_probs=41.5

Q ss_pred             CeEEEEeCC-CCeEEeEec------CCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         56 DTVLTLDKS-TGLLIDAWG------KNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        56 ~~I~vfdp~-~G~~l~~~G------~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      ++|..|+.+ +|......+      ...+..|.|+++|++|+|||++.++++|.+|+++|+.
T Consensus       199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~  260 (319)
T d2dg1a1         199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYP  260 (319)
T ss_dssp             TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCE
T ss_pred             CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcE
Confidence            677777421 444433222      2345679999999999999999999999999999975

>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=4.2e-08  Score=71.03  Aligned_cols=67  Identities=13%  Similarity=-0.023  Sum_probs=52.5

Q ss_pred             cceeeEEEeeeeecCccCCCCcccceEEeecccccCCCC------------CCCCCeEEEEeCCCCeEEeEecCCCccCc
Q psy15750         13 DSIGYVARVDGTSMQPVCPSTYMDTLYCSIEESESGTKR------------PISVDTVLTLDKSTGLLIDAWGKNKFYMP   80 (115)
Q Consensus        13 d~v~~~~~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~------------~i~~~~I~vfdp~~G~~l~~~G~g~f~~P   80 (115)
                      .++.+..+|.+.||+|||..++     +..++|++|..+            .+++++|++|+. ...-...+.++...+|
T Consensus         2 ~f~~~~f~IPs~SMePTL~~GD-----~l~V~K~~Yg~r~P~~~~~~~~~~~~~rgdivvf~~-p~~~~~~~ikR~ig~p   75 (247)
T d1b12a_           2 SFIYEPFQIPSGSMMPTLLIGD-----FILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKY-PEDPKLDYIKRAVGLP   75 (247)
T ss_dssp             BCCEEEEECCSCTTTTTSCTTE-----EEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEEC-TTCTTSEEEEEEEECT
T ss_pred             EEEEEEEEeCcccccchhccCC-----EEEEEccccCccCCccCcccccccCcccCceeeecC-CCCCCccccccccCCC
Confidence            4778999999999999999999     899999888654            458999999975 3322235666777788


Q ss_pred             eeEEEc
Q psy15750         81 HGCTVD   86 (115)
Q Consensus        81 ~Gi~vd   86 (115)
                       |.++-
T Consensus        76 -GD~i~   80 (247)
T d1b12a_          76 -GDKVT   80 (247)
T ss_dssp             -TCEEE
T ss_pred             -CCeEE
Confidence             77764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.89  E-value=5.8e-06  Score=61.06  Aligned_cols=55  Identities=7%  Similarity=0.040  Sum_probs=41.0

Q ss_pred             CCeEEEEe--CCCCeEEeE--e---cCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCC
Q psy15750         55 VDTVLTLD--KSTGLLIDA--W---GKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        55 ~~~I~vfd--p~~G~~l~~--~---G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f  110 (115)
                      .++|..||  + +|++..+  +   .......|.|+++|++|+|||++.+.++|++|+|+|..
T Consensus       197 ~~~i~~~d~~~-~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~  258 (314)
T d1pjxa_         197 TKKLWSYDIKG-PAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ  258 (314)
T ss_dssp             TTEEEEEEEEE-TTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred             ccceEEeeccC-ccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCE
Confidence            36777774  3 5655322  1   12345579999999999999999999999999999654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.81  E-value=3.1e-05  Score=56.80  Aligned_cols=73  Identities=8%  Similarity=0.108  Sum_probs=53.5

Q ss_pred             eeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCC---
Q psy15750         21 VDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVA---   97 (115)
Q Consensus        21 v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~---   97 (115)
                      .+|+..+|..+.+.+|..                .+.|..++| +|+....+....-..|+|++++++|++||++.+   
T Consensus        42 lEG~~~D~~G~Ly~~D~~----------------~g~I~ri~p-~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~  104 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVF----------------EGNIFKINP-ETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFK  104 (319)
T ss_dssp             EEEEEECTTSCEEEEETT----------------TCEEEEECT-TTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSS
T ss_pred             cEeCEECCCCCEEEEECC----------------CCEEEEEEC-CCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCc
Confidence            368788777776665543                388999999 666544444444557999999999999999765   


Q ss_pred             -CCEEEEeCCCCCC
Q psy15750         98 -LHQVFKTPYTYNF  110 (115)
Q Consensus        98 -~h~V~~f~~~G~f  110 (115)
                       ...++.+++++..
T Consensus       105 ~~~~i~~~~~~~~~  118 (319)
T d2dg1a1         105 STGGIFAATENGDN  118 (319)
T ss_dssp             SCCEEEEECTTSCS
T ss_pred             cceeEEEEcCCCce
Confidence             4568888887654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.65  E-value=2.4e-05  Score=57.12  Aligned_cols=36  Identities=19%  Similarity=0.050  Sum_probs=32.4

Q ss_pred             CccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         76 KFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        76 ~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      ....|.|+++|++|||||+..+.++|.+|+|+|+.-
T Consensus       197 ~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~  232 (295)
T d2ghsa1         197 IKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHI  232 (295)
T ss_dssp             SSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEE
T ss_pred             ccccccceEEcCCCCEEeeeeCCCceEEecCCCcEe
Confidence            345799999999999999999999999999999853

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.62  E-value=4.3e-05  Score=55.11  Aligned_cols=44  Identities=16%  Similarity=0.213  Sum_probs=36.6

Q ss_pred             CeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         66 GLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        66 G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      .+++.++..+.|  |.|+++++||+|||+|...++|++++++|+..
T Consensus        18 ~~v~~~~p~~~~--~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~   61 (302)
T d2p4oa1          18 AKIITSFPVNTF--LENLASAPDGTIFVTNHEVGEIVSITPDGNQQ   61 (302)
T ss_dssp             EEEEEEECTTCC--EEEEEECTTSCEEEEETTTTEEEEECTTCCEE
T ss_pred             ccEEEECCCCCC--cCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE
Confidence            566667765554  78999999999999999999999999998754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=8.1e-05  Score=53.80  Aligned_cols=51  Identities=12%  Similarity=0.008  Sum_probs=42.2

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCCEEEEeCCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G  108 (115)
                      .+.|..++. +|.-.+..-. .+..|.|++++ ++.||++|...|+|++++..+
T Consensus       188 ~~~I~~~~~-~g~~~~~v~~-~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~  238 (263)
T d1npea_         188 THRAECLNP-AQPGRRKVLE-GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAI  238 (263)
T ss_dssp             TTEEEEEET-TEEEEEEEEE-CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             CCEEEEEEC-CCCCeEEEEC-CCCCcEEEEEE-CCEEEEEECCCCEEEEEECCC
Confidence            378888998 8877666554 35689999998 689999999999999999864

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.51  E-value=6.9e-05  Score=55.02  Aligned_cols=51  Identities=14%  Similarity=0.140  Sum_probs=39.1

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.+|||+.|+++..+. .....|.+++..++++ +|||+..+.+|++++..
T Consensus       247 g~I~~~dp~~g~~~~~i~-~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         247 SHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CEEEEEeCCCCEEEEEEE-CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            889999994455544432 2345788999998875 99999999999988754

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.36  E-value=0.00011  Score=52.97  Aligned_cols=69  Identities=9%  Similarity=-0.038  Sum_probs=50.2

Q ss_pred             EeeeeecCccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCEEEEeCCCC
Q psy15750         20 RVDGTSMQPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFIWLTDVALH   99 (115)
Q Consensus        20 ~v~G~Sm~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I~VtD~~~h   99 (115)
                      .++|+++.|..+.+..|..                .+.|..++| +|+....+.  .-.-|+|++++++|++||++...+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~----------------~~~I~~i~p-~g~~~~~~~--~~~~~~gla~~~dG~l~v~~~~~~   89 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHE----------------VGEIVSITP-DGNQQIHAT--VEGKVSGLAFTSNGDLVATGWNAD   89 (302)
T ss_dssp             CEEEEEECTTSCEEEEETT----------------TTEEEEECT-TCCEEEEEE--CSSEEEEEEECTTSCEEEEEECTT
T ss_pred             CcCCEEECCCCCEEEEeCC----------------CCEEEEEeC-CCCEEEEEc--CCCCcceEEEcCCCCeEEEecCCc
Confidence            4778888887665543332                378999999 888654433  224699999999999999988887


Q ss_pred             EEEEeCCC
Q psy15750        100 QVFKTPYT  107 (115)
Q Consensus       100 ~V~~f~~~  107 (115)
                      ++.+++..
T Consensus        90 ~~~~~~~~   97 (302)
T d2p4oa1          90 SIPVVSLV   97 (302)
T ss_dssp             SCEEEEEE
T ss_pred             eEEEEEec
Confidence            77665543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.33  E-value=0.00033  Score=47.77  Aligned_cols=51  Identities=12%  Similarity=0.212  Sum_probs=43.7

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G  108 (115)
                      +.|.++|+++++++.++--+  ..|+++++++||+ +||++...++|..+|...
T Consensus        12 ~~v~v~D~~t~~~~~~i~~g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t   63 (301)
T d1l0qa2          12 DNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT   63 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT
T ss_pred             CEEEEEECCCCeEEEEEECC--CCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            78999999899999887543  3699999999987 789999999999998753

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00015  Score=52.29  Aligned_cols=56  Identities=21%  Similarity=0.198  Sum_probs=46.8

Q ss_pred             CCCeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCCC-CEEEEeCCCCCC
Q psy15750         54 SVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVAL-HQVFKTPYTYNF  110 (115)
Q Consensus        54 ~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~-h~V~~f~~~G~f  110 (115)
                      ..++|.++++ +|+............|.++++|+ +|.+|++|.+. .+|++.+.+|.-
T Consensus        97 ~~~~I~v~~~-~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~  154 (266)
T d1ijqa1          97 VLGTVSVADT-KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  154 (266)
T ss_dssp             TTTEEEEEET-TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCCEEEeEec-CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc
Confidence            3478999999 88877776666778899999995 89999999874 589999999864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.00028  Score=50.86  Aligned_cols=59  Identities=17%  Similarity=0.080  Sum_probs=48.7

Q ss_pred             CCCCCeEEEEeCCCCeEEeEecCCCccCceeEEEc-cCCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         52 PISVDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVD-NKGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        52 ~i~~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd-~~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      +...+.|...+. +|.-...+.......|.|+|+| ..++||++|...++|.+.+.+|+..
T Consensus        54 d~~~~~I~~~~l-~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          54 DISEPSIGRASL-HGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             ETTTTEEEEEES-SSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             ECCCCeEEEEEc-ccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            344578888887 7776667666667889999999 5889999999999999999998764

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0013  Score=47.15  Aligned_cols=55  Identities=18%  Similarity=0.196  Sum_probs=41.6

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEcc-CCCEEEEeCCCCEEEEeCCCCCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDN-KGFIWLTDVALHQVFKTPYTYNFG  111 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~-~g~I~VtD~~~h~V~~f~~~G~f~  111 (115)
                      +.|...+. +|+-...+....+..|+|+++|+ ++.||++|...++|.+.+.+|...
T Consensus       143 ~~I~r~~~-dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~  198 (266)
T d1ijqa1         143 AKIKKGGL-NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  198 (266)
T ss_dssp             CEEEEEET-TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             cceeEecc-CCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE
Confidence            34555555 55544555445678999999995 677999999999999999998653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.67  E-value=0.0048  Score=41.66  Aligned_cols=50  Identities=18%  Similarity=0.150  Sum_probs=41.5

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.++|..+++++.++-.+  ..|+++++.+||+ +||++...++|.++|.+
T Consensus       224 ~~v~v~D~~t~~~~~~~~~~--~~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         224 NTVSMIDTGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             CEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             eeeeeeecCCCeEEEEEcCC--CCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            57889998888888776533  3689999999997 89999999999999864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=96.58  E-value=0.0058  Score=41.86  Aligned_cols=52  Identities=4%  Similarity=0.099  Sum_probs=42.3

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.++|.++++++.++--..-..|+++++.+||. +||++...++|+.+|.+
T Consensus        18 ~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~   70 (346)
T d1jmxb_          18 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD   70 (346)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCc
Confidence            68999999999998876422224689999999986 68999889999999875

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.34  E-value=0.008  Score=40.94  Aligned_cols=52  Identities=13%  Similarity=0.024  Sum_probs=43.7

Q ss_pred             CeEEEEeCCCCeEEeEecC-CCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGK-NKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~-g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.|||.++++++.++-. .....|+++++.+||+ +||+....++|.++|.+
T Consensus        11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~   64 (337)
T d1pbyb_          11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECC
Confidence            7899999999999888753 3456799999999986 67998889999999865

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.40  E-value=0.025  Score=41.88  Aligned_cols=34  Identities=15%  Similarity=0.446  Sum_probs=29.5

Q ss_pred             CccCceeEEEccCC-CEEEEeCCCCEEEEeCCCCC
Q psy15750         76 KFYMPHGCTVDNKG-FIWLTDVALHQVFKTPYTYN  109 (115)
Q Consensus        76 ~f~~P~Gi~vd~~g-~I~VtD~~~h~V~~f~~~G~  109 (115)
                      .+.+|.||++++++ .+||++...++|.+|+.++.
T Consensus       204 ~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         204 GFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            47789999999876 79999999999999887754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.01  E-value=0.47  Score=34.14  Aligned_cols=50  Identities=8%  Similarity=0.074  Sum_probs=40.0

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCE-EEEeCCCCEEEEeCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFI-WLTDVALHQVFKTPYT  107 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I-~VtD~~~h~V~~f~~~  107 (115)
                      .+.|.++|.++|+++.++-.+  ..||+++..|||.. |+++ ..+.+.++|.+
T Consensus        41 dg~v~vwD~~t~~~~~~l~~g--~~~~~vafSPDGk~l~~~~-~d~~v~vwd~~   91 (426)
T d1hzua2          41 AGQIALVDGDSKKIVKVIDTG--YAVHISRMSASGRYLLVIG-RDARIDMIDLW   91 (426)
T ss_dssp             TTEEEEEETTTCSEEEEEECC--SSEEEEEECTTSCEEEEEE-TTSEEEEEETT
T ss_pred             CCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCCCEEEEEe-CCCCEEEEEcc
Confidence            489999999999999988655  35999999999975 5554 45688888765

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.62  E-value=0.12  Score=35.53  Aligned_cols=52  Identities=12%  Similarity=0.102  Sum_probs=40.3

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC--EEEEeCCCCEEEEeCC-CCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF--IWLTDVALHQVFKTPY-TYN  109 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~--I~VtD~~~h~V~~f~~-~G~  109 (115)
                      +.|.++|..+++.+.++-.+  ..|.++++.+||+  +|++....++|+++|. .|+
T Consensus       280 ~~v~v~d~~t~~~~~~~~~~--~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         280 RFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             EEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CeEEEEeCCCCcEEEEecCC--CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence            57889998789888776432  2477899999987  7888888899999986 344

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.30  E-value=0.1  Score=36.95  Aligned_cols=50  Identities=6%  Similarity=-0.009  Sum_probs=39.8

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC--EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF--IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~--I~VtD~~~h~V~~f~~~  107 (115)
                      ..|.++|.++|+.+.++..+  ..|.++++.+||+  +|++..+.++|.++|..
T Consensus       294 ~~v~v~D~~t~~~~~~~~~~--~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         294 ENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             ceEEEEECCCCcEeEEecCC--CceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            35778888888887766543  3577899999986  79999889999999864

>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: LexA C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.53  E-value=0.32  Score=30.71  Aligned_cols=46  Identities=15%  Similarity=0.146  Sum_probs=32.0

Q ss_pred             eEEEeeeeecCcc-CCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeEe
Q psy15750         17 YVARVDGTSMQPV-CPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDAW   72 (115)
Q Consensus        17 ~~~~v~G~Sm~pt-~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~~   72 (115)
                      ...+|+|-||.|+ .+.++  .+.   .++    ...+..++|.++.- +|++..++
T Consensus        39 f~lrV~GdSM~~~~i~~gd--~vi---v~~----~~~~~~G~ivv~~~-~ge~~vKr   85 (126)
T d1jhfa2          39 FLLRVSGMSMKDIGIMDGD--LLA---VHK----TQDVRNGQVVVARI-DDEVTVKR   85 (126)
T ss_dssp             EEEECCSSTTGGGTCCTTC--EEE---EEE----CSCCCTTSEEEEEE-TTEEEEEE
T ss_pred             EEEEEcCCcccCcccCCCE--EEE---Eec----cccccCCCEEEEEE-CCEEEEEE
Confidence            4689999999998 56666  333   222    24567788999987 78765553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=91.42  E-value=0.23  Score=33.43  Aligned_cols=28  Identities=21%  Similarity=0.290  Sum_probs=23.4

Q ss_pred             cCceeEEEccCCC-EEEEeCCCCEEEEeC
Q psy15750         78 YMPHGCTVDNKGF-IWLTDVALHQVFKTP  105 (115)
Q Consensus        78 ~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~  105 (115)
                      ..|+++++.+||. +||++...++|..|+
T Consensus       276 ~~p~~~a~spDGk~l~va~~~~~~v~v~~  304 (333)
T d1ri6a_         276 TQPRGFNVDHSGKYLIAAGQKSHHISVYE  304 (333)
T ss_dssp             SSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             CCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            4799999999998 799988888877763

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=91.39  E-value=0.45  Score=32.74  Aligned_cols=51  Identities=8%  Similarity=-0.007  Sum_probs=39.3

Q ss_pred             CCeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC--EEEEeCCCCEEEEeCCC
Q psy15750         55 VDTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF--IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        55 ~~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~--I~VtD~~~h~V~~f~~~  107 (115)
                      .+.+.++|..+|+.+.....+  ..|+++++.+||+  +|++....+.|+.+|..
T Consensus       297 ~~~v~~~d~~t~~~~~~~~~~--~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         297 AKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             CCeEEEEECCCCcEEEEecCC--CCeeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            356778887778777765432  3578899999997  78898889999999875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=90.66  E-value=0.36  Score=32.34  Aligned_cols=50  Identities=8%  Similarity=0.014  Sum_probs=33.6

Q ss_pred             CeEEEEeCC-CCe--EEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKS-TGL--LIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~-~G~--~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.+|+.. +|+  +++....+  ..|+++++.|||+ +||++...+.|..|+-+
T Consensus        14 ~~I~v~~~~~~~~l~~~~~~~~~--~~v~~la~spDG~~L~v~~~~d~~i~~~~i~   67 (333)
T d1ri6a_          14 QQIHVWNLNHEGALTLTQVVDVP--GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA   67 (333)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECS--SCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CcEEEEEEcCCCCeEEEEEEcCC--CCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence            678888631 343  33433322  4688999999986 67998888877766543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.58  E-value=0.54  Score=32.97  Aligned_cols=35  Identities=11%  Similarity=0.328  Sum_probs=29.0

Q ss_pred             CccCceeEEEccCCC-EEEEeCCCCEEEEeCCCCCC
Q psy15750         76 KFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYTYNF  110 (115)
Q Consensus        76 ~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~G~f  110 (115)
                      .+..|.|++.+++++ +|++|...++|++|+.+.+.
T Consensus       146 ~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~  181 (295)
T d2ghsa1         146 DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART  181 (295)
T ss_dssp             EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred             ccCCcceeeecCCCceEEEeecccceeeEeeecccc
Confidence            467899999998775 89999999999998766543

>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: lambda repressor C-terminal domain
species: Bacteriophage lambda [TaxId: 10710]

Probab=90.46  E-value=0.83  Score=27.57  Aligned_cols=44  Identities=14%  Similarity=0.262  Sum_probs=27.4

Q ss_pred             eeEEEeeeeec------CccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeE
Q psy15750         16 GYVARVDGTSM------QPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLL   68 (115)
Q Consensus        16 ~~~~~v~G~Sm------~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~   68 (115)
                      +..-+|+|-||      +|+++.++     ....+.    ...++.+++++.-...++.
T Consensus         5 ~F~l~V~GdSM~~~~~~ep~i~~Gd-----~viVd~----~~~~~~g~ivva~~~~~~~   54 (101)
T d1f39a_           5 AFWLEVEGNSMTAPTGSKPSFPDGM-----LILVDP----EQAVEPGDFCIARLGGDEF   54 (101)
T ss_dssp             CEEEECCSSTTCCCTTCSSCCCTTC-----EEEEET----TSCCCTTCEEEEECTTSCE
T ss_pred             EEEEEEeCCccCCCcccCCCcCCCC-----EEEEEe----cCccCCCCEEEEEECCCeE
Confidence            34579999999      79999988     444443    2344556665543314444

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=89.74  E-value=0.54  Score=34.49  Aligned_cols=49  Identities=12%  Similarity=0.015  Sum_probs=38.6

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCCE-EEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGFI-WLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~I-~VtD~~~h~V~~f~~~  107 (115)
                      +.|.++|.+++++++++-.+.  .||+++..+||.. |++. ....+.++|.+
T Consensus        42 g~v~v~D~~t~~v~~~~~~g~--~~~~v~fSpDG~~l~~~s-~dg~v~~~d~~   91 (432)
T d1qksa2          42 GQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIG-RDGKVNMIDLW   91 (432)
T ss_dssp             TEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEE-TTSEEEEEETT
T ss_pred             CEEEEEECCCCcEEEEEeCCC--CeeEEEECCCCCEEEEEc-CCCCEEEEEee
Confidence            789999999999999876553  6999999999974 5554 35677777754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=89.50  E-value=0.76  Score=30.43  Aligned_cols=49  Identities=16%  Similarity=0.155  Sum_probs=37.5

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.+||.++++.+.+...+  ..|.++++.+||+ +||++ ...+|..||.+
T Consensus       260 ~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dG~~l~v~~-~~~~i~v~D~~  309 (337)
T d1pbyb_         260 NVLESFDLEKNASIKRVPLP--HSYYSVNVSTDGSTVWLGG-ALGDLAAYDAE  309 (337)
T ss_dssp             SEEEEEETTTTEEEEEEECS--SCCCEEEECTTSCEEEEES-BSSEEEEEETT
T ss_pred             ccEEEEECCCCcEEEEEcCC--CCEEEEEECCCCCEEEEEe-CCCcEEEEECC
Confidence            57889999888888876543  3578999999987 57764 45678888875

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=89.42  E-value=0.62  Score=31.03  Aligned_cols=49  Identities=16%  Similarity=0.150  Sum_probs=37.0

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCC-CEEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKG-FIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g-~I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.+||..++++++....+.  .|.++++.+|| .+|+.+ ....|..||.+
T Consensus       272 ~~v~v~d~~~~~~~~~~~~~~--~~~~va~s~DG~~l~v~~-~d~~v~v~D~~  321 (346)
T d1jmxb_         272 NRLAKYDLKQRKLIKAANLDH--TYYCVAFDKKGDKLYLGG-TFNDLAVFNPD  321 (346)
T ss_dssp             SEEEEEETTTTEEEEEEECSS--CCCEEEECSSSSCEEEES-BSSEEEEEETT
T ss_pred             CeEEEEECCCCcEEEEEcCCC--CEEEEEEcCCCCEEEEEe-CCCcEEEEECc
Confidence            578899988899887765432  58899999987 556654 45789999876

>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: UmuD'
species: Escherichia coli [TaxId: 562]

Probab=87.89  E-value=0.52  Score=29.03  Aligned_cols=45  Identities=18%  Similarity=0.147  Sum_probs=32.7

Q ss_pred             eEEEeeeeec-CccCCCCcccceEEeecccccCCCCCCCCCeEEEEeCCCCeEEeE
Q psy15750         17 YVARVDGTSM-QPVCPSTYMDTLYCSIEESESGTKRPISVDTVLTLDKSTGLLIDA   71 (115)
Q Consensus        17 ~~~~v~G~Sm-~pt~~~~~~D~~~~~~~~~~~~~~~~i~~~~I~vfdp~~G~~l~~   71 (115)
                      ...+|+|-|| +|..+.++     ....++    ...++.++|.+..- +|++..+
T Consensus        21 f~~rV~GdSM~~~gI~~GD-----lliVd~----~~~~~~g~ivva~i-~ge~~vK   66 (105)
T d1umua_          21 YFVKASGDSMIDGGISDGD-----LLIVDS----AITASHGDIVIAAV-DGEFTVK   66 (105)
T ss_dssp             EEEECCSSTTGGGTCCTTC-----EEEEET----TSCCCTTCEEEEEE-TTEEEEE
T ss_pred             EEEEEcCCccccCccCCCC-----EEEEEc----ccccccCcEEEEEE-CCEEEEE
Confidence            4689999999 56678887     333433    45667789999987 7887555

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=84.52  E-value=0.46  Score=34.21  Aligned_cols=27  Identities=15%  Similarity=0.309  Sum_probs=23.9

Q ss_pred             CceeEEEccCCC-EEEEeCCCCEEEEeC
Q psy15750         79 MPHGCTVDNKGF-IWLTDVALHQVFKTP  105 (115)
Q Consensus        79 ~P~Gi~vd~~g~-I~VtD~~~h~V~~f~  105 (115)
                      .||+++.+++|+ +||+|.+.++|..|+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~  173 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHR  173 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            689999999997 899999999988664

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=84.27  E-value=1  Score=30.41  Aligned_cols=49  Identities=16%  Similarity=0.123  Sum_probs=34.8

Q ss_pred             CeEEEEeCCCCeEEeEecCCCccCceeEEEccCCC-EEEEeCC---------CCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGKNKFYMPHGCTVDNKGF-IWLTDVA---------LHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~g~f~~P~Gi~vd~~g~-I~VtD~~---------~h~V~~f~~~  107 (115)
                      ..|.+||..+|+++.+.-.+.  .| ++++.+||+ +||++..         ...|.++|..
T Consensus        28 ~~v~v~D~~tg~~~~~~~~g~--~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~   86 (355)
T d2bbkh_          28 TQQFVIDGEAGRVIGMIDGGF--LP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV   86 (355)
T ss_dssp             EEEEEEETTTTEEEEEEEECS--SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             CeEEEEECCCCcEEEEEECCC--CC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence            579999999999988764332  34 789999886 7887532         3467777654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=83.38  E-value=1.3  Score=30.80  Aligned_cols=52  Identities=13%  Similarity=-0.148  Sum_probs=39.3

Q ss_pred             CeEEEEeCCCCeEEeEecC--C----CccCceeEEEccCC-CEEEEeCCCCEEEEeCCC
Q psy15750         56 DTVLTLDKSTGLLIDAWGK--N----KFYMPHGCTVDNKG-FIWLTDVALHQVFKTPYT  107 (115)
Q Consensus        56 ~~I~vfdp~~G~~l~~~G~--g----~f~~P~Gi~vd~~g-~I~VtD~~~h~V~~f~~~  107 (115)
                      +.|.+||+.+++.+....-  +    .-..|+++++.+|| .+||++...+++..+|..
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~  154 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVP  154 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEET
T ss_pred             CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence            5699999988888877641  1    23478999999988 588988777788777654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.53  E-value=0.92  Score=34.06  Aligned_cols=33  Identities=21%  Similarity=0.351  Sum_probs=28.6

Q ss_pred             CccCceeEEEccCCCEEEEeCCCCEEEEeCCCC
Q psy15750         76 KFYMPHGCTVDNKGFIWLTDVALHQVFKTPYTY  108 (115)
Q Consensus        76 ~f~~P~Gi~vd~~g~I~VtD~~~h~V~~f~~~G  108 (115)
                      .+..|.+|+..++|+|||+.....+|++++.++
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~   57 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPES   57 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCC
Confidence            477999999999999999998778899887654