Psyllid ID: psy15804

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVRR
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccHHcHHHHHHHcccccccEEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccEEEEcccccccccccHHHHHHHHEEEcccEEEccccEEEEEEEEccHccHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccHHHHHccc
Coil and Loop (DISEMBL)
VEITLKVIKglypgvttvqLDNLAAETAAfyeplkhpdyavlwlpellcpnlhkeTKKTWSEVIEELYNMVNketgtrtpmisdKHYEIIMKNADRLnsaiiydrdfnynffgfKTLERSYLMKNngrvverpqHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRthamsrsprfssfslygvrr
Flexible Loop (DISEMBL)
veitlkvikglypgvttVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNmvnketgtrtpmisDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRThamsrsprfssfslygvrr
Low Complexity Region (SEG)
VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVRR
Disordered region (IsUnstruct)
**ITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTH******************
Disordered Region (DISOPRED)
VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVRR
Disordered Region (DISEMBL)
VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVRR
Disordered Region (DISPRO)
VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSR*PRFSSF*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
P48591	812	Ribonucleoside-diphosphat	yes	N/A	0.953	0.226	0.638	8e-64
P07742	792	Ribonucleoside-diphosphat	yes	N/A	0.974	0.237	0.619	4e-58
P36602	811	Ribonucleoside-diphosphat	yes	N/A	0.953	0.226	0.622	5e-58
P21524	888	Ribonucleoside-diphosphat	yes	N/A	0.974	0.211	0.562	9e-58
P23921	792	Ribonucleoside-diphosphat	yes	N/A	0.974	0.237	0.609	2e-57
P79732	794	Ribonucleoside-diphosphat	yes	N/A	0.974	0.236	0.630	2e-57
Q5R919	792	Ribonucleoside-diphosphat	yes	N/A	0.974	0.237	0.604	6e-57
Q9UW15	929	Ribonucleoside-diphosphat	N/A	N/A	0.974	0.202	0.572	1e-56
P21672	869	Ribonucleoside-diphosphat	no	N/A	0.974	0.216	0.541	2e-55
P20503	771	Ribonucleoside-diphosphat	no	N/A	0.958	0.239	0.585	5e-55

>sp|P48591|RIR1_DROME Ribonucleoside-diphosphate reductase large subunit OS=Drosophila melanogaster GN=RnrL PE=1 SV=2

 Score =  243 bits (619), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 120/188 (63%), Positives = 145/188 (77%), Gaps = 4/188 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V ITL+VI GLY GVTT +LDNLAAE AA      HPDYA+L    +   NLHKETKK +
Sbjct: 48  VTITLQVINGLYCGVTTQELDNLAAEIAAGL-TCNHPDYAIL-AARIAVSNLHKETKKAF 105

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V E+LYN VNKET  + P++S+ HY ++ KNA RLNS+IIYDRDF YN+FGFKTLERS
Sbjct: 106 SDVFEDLYNHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERS 165

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG++ ERPQHMLMRVA+GIHGEDIDAA+ETYNLLSE+YFTHA+  +    A +  
Sbjct: 166 YLLKRNGKIAERPQHMLMRVAIGIHGEDIDAAVETYNLLSERYFTHASPTLFA--AATNR 223

Query: 181 PRFSSFSL 188
           P+ SS  L
Sbjct: 224 PQLSSCFL 231

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: 7EC: .EC: 4EC: .EC: 1

>sp|P07742|RIR1_MOUSE Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus GN=Rrm1 PE=1 SV=2

 Score =  223 bits (569), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 148/192 (77%), Gaps = 4/192 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
            +IT+KVI+GLY GVTTV+LD LAAETAA     KHPDYA+L    +   NLHKETKK +
Sbjct: 37  AQITMKVIQGLYSGVTTVELDTLAAETAATLT-TKHPDYAIL-AARIAVSNLHKETKKVF 94

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V+E+LYN +N   G  +PM++    +I+M N DRLNSAIIYDRDF+YN+FGFKTLERS
Sbjct: 95  SDVMEDLYNYINPHNGRHSPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERS 154

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSEK+FTHA+  +   +A +  
Sbjct: 155 YLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSEKWFTHASPTLF--NAGTNR 212

Query: 181 PRFSSFSLYGVR 192
           P+ SS  L  ++
Sbjct: 213 PQLSSCFLLSMK 224

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

>sp|P36602|RIR1_SCHPO Ribonucleoside-diphosphate reductase large chain OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc22 PE=1 SV=2

 Score =  223 bits (569), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 117/188 (62%), Positives = 149/188 (79%), Gaps = 4/188 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           VEIT KVI G+YPGVTT++LDNLAAETAA     KHPDYA+L    +   NLHK+T+K +
Sbjct: 37  VEITQKVISGVYPGVTTIELDNLAAETAATMT-TKHPDYAIL-AARIAVSNLHKQTEKVF 94

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S V+++L++ VN +T    PMISDK Y+I+MK+ D L+SAIIYDRDF YNFFGFKTLERS
Sbjct: 95  STVVQQLHDYVNPKTDKPAPMISDKIYDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERS 154

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL++ +G+V ERPQHM+MRVAVGIHGEDI+AAIETYNL+S++YFTHA+  +   +A +  
Sbjct: 155 YLLRIDGKVAERPQHMIMRVAVGIHGEDIEAAIETYNLMSQRYFTHASPTLF--NAGTPR 212

Query: 181 PRFSSFSL 188
           P+ SS  L
Sbjct: 213 PQLSSCFL 220

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

>sp|P21524|RIR1_YEAST Ribonucleoside-diphosphate reductase large chain 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNR1 PE=1 SV=2

 Score =  222 bits (566), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 145/192 (75%), Gaps = 4/192 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V++T ++I G+Y GVTT++LDNLAAET A+   + HPDYA L    +   NLHK+T K +
Sbjct: 37  VKVTQRIISGVYEGVTTIELDNLAAETCAYMTTV-HPDYATL-AARIAISNLHKQTTKQF 94

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V+E+LY  VN  TG   PMISD  Y I+M+N D+LNSAI+YDRDF Y++FGFKTLERS
Sbjct: 95  SKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERS 154

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL++ NG+V ERPQH++MRVA+GIHG DI+AA+ETYNL+S KYFTHA+  +   +A +  
Sbjct: 155 YLLRINGQVAERPQHLIMRVALGIHGRDIEAALETYNLMSLKYFTHASPTLF--NAGTPK 212

Query: 181 PRFSSFSLYGVR 192
           P+ SS  L  ++
Sbjct: 213 PQMSSCFLVAMK 224

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

>sp|P23921|RIR1_HUMAN Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens GN=RRM1 PE=1 SV=1

 Score =  221 bits (564), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 148/192 (77%), Gaps = 4/192 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
            +IT+KVI+GLY GVTTV+LD LAAETAA     KHPDYA+L    +   NLHKETKK +
Sbjct: 37  AQITMKVIQGLYSGVTTVELDTLAAETAATLT-TKHPDYAIL-AARIAVSNLHKETKKVF 94

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFKTLERS
Sbjct: 95  SDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERS 154

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSE++FTHA+  +   +A +  
Sbjct: 155 YLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLF--NAGTNR 212

Query: 181 PRFSSFSLYGVR 192
           P+ SS  L  ++
Sbjct: 213 PQLSSCFLLSMK 224

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

>sp|P79732|RIR1_DANRE Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio GN=rrm1 PE=2 SV=1

 Score =  221 bits (564), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 147/192 (76%), Gaps = 4/192 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
            +IT+KVI+GLY GVTTV+LD LAAETAA     KHPDYA+L    +   NLHKETKK +
Sbjct: 37  TQITMKVIQGLYSGVTTVELDTLAAETAATST-TKHPDYAIL-AARIAVSNLHKETKKVF 94

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           SEV+E+LYN VN      +PMIS +  +I++ N DRLNSAIIYDRDF+YNFFGFKTLERS
Sbjct: 95  SEVMEDLYNYVNPLNSRHSPMISKETLDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERS 154

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG+V ERPQHMLMRV+VGIH EDI AAIETYNLLSEK+FTHA+  +   +A +  
Sbjct: 155 YLLKINGKVAERPQHMLMRVSVGIHKEDIAAAIETYNLLSEKWFTHASPTLF--NAGTNR 212

Query: 181 PRFSSFSLYGVR 192
           P+ SS  L  ++
Sbjct: 213 PQLSSCFLLAMK 224

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

>sp|Q5R919|RIR1_PONAB Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii GN=RRM1 PE=2 SV=1

 Score =  220 bits (560), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 147/192 (76%), Gaps = 4/192 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
            +IT+KVI+GLY GVTTV+LD LAAETAA     KHPDYA+L    +   NLHKE KK +
Sbjct: 37  AQITMKVIQGLYSGVTTVELDTLAAETAATLT-TKHPDYAIL-AARIAVSNLHKEAKKVF 94

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFKTLERS
Sbjct: 95  SDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERS 154

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSE++FTHA+  +   +A +  
Sbjct: 155 YLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLF--NAGTNR 212

Query: 181 PRFSSFSLYGVR 192
           P+ SS  L  ++
Sbjct: 213 PQLSSCFLLSMK 224

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

>sp|Q9UW15|RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rnr-1 PE=1 SV=2

 Score =  219 bits (557), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/192 (57%), Positives = 140/192 (72%), Gaps = 4/192 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V IT KVI G+Y GVTT QLD+LAAETAA Y  + HPDYA+L    +   NLHK+TKK W
Sbjct: 37  VAITQKVISGVYGGVTTAQLDDLAAETAA-YMTVTHPDYAIL-AARIAVSNLHKQTKKQW 94

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S VI ELYN VN  TG  +PMI+   YE +M++ D  +SAI+YDRDFNY +FGFKTLERS
Sbjct: 95  SLVISELYNYVNPRTGKHSPMIAKDVYECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERS 154

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K +G++ ERPQHM+MRVAVGI G+D++  IETYNL+S K FTHA+  +   +A +  
Sbjct: 155 YLLKLDGQIAERPQHMIMRVAVGIWGDDVERVIETYNLMSLKTFTHASPTLF--NAGTPQ 212

Query: 181 PRFSSFSLYGVR 192
           P+ SS  L  ++
Sbjct: 213 PQLSSCFLVDMK 224

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

>sp|P21672|RIR3_YEAST Ribonucleoside-diphosphate reductase large chain 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNR3 PE=1 SV=4

 Score =  214 bits (546), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/192 (54%), Positives = 143/192 (74%), Gaps = 4/192 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V++T ++I G+Y GVTTV+LDNLAAET A+   + HPDYA L    +   NLHK+T K +
Sbjct: 37  VKVTQRIISGVYSGVTTVELDNLAAETCAYMTTV-HPDYATL-AARIAISNLHKQTTKQF 94

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+VIE+L++ +N  TG   PMISD+ Y I+M+N D LNSAI+YDRDF Y +FGFKTLERS
Sbjct: 95  SKVIEDLHDWINPATGKHAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERS 154

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL++ NG V ERPQH++MRVA+GIHG DI++ ++TYNL+S +YFTHA+  +   +A +  
Sbjct: 155 YLLRLNGEVAERPQHLVMRVALGIHGSDIESVLKTYNLMSLRYFTHASPTLF--NAGTPH 212

Query: 181 PRFSSFSLYGVR 192
           P+ SS  L  ++
Sbjct: 213 PQMSSCFLIAMK 224

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

>sp|P20503|RIR1_VACCC Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia virus (strain Copenhagen) GN=I4L PE=2 SV=1

 Score =  213 bits (543), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 110/188 (58%), Positives = 140/188 (74%), Gaps = 3/188 (1%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           ++I +KVI+G+Y GVTTV+LD LAAE AA     +HPDYA+L    +   NLHKETKK +
Sbjct: 37  IKIAMKVIQGIYNGVTTVELDTLAAEIAATCTT-QHPDYAIL-AARIAVSNLHKETKKLF 94

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           SEV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFKTLE+S
Sbjct: 95  SEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKS 154

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K N ++VERPQHMLMRVAVGIH  DID+AIETYNLLSEK+FTHA+  +      SR 
Sbjct: 155 YLLKINNKIVERPQHMLMRVAVGIHQWDIDSAIETYNLLSEKWFTHASPTLFNA-GTSRH 213

Query: 181 PRFSSFSL 188
              S F L
Sbjct: 214 QMSSCFLL 221

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
91080433	808	PREDICTED: similar to AGAP010198-PA [Tri	0.953	0.227	0.659	7e-64
195339753	812	GM11750 [Drosophila sechellia] gi|194130	0.953	0.226	0.638	3e-62
195578133	812	GD22272 [Drosophila simulans] gi|1941909	0.953	0.226	0.638	3e-62
17352481	812	ribonucleoside diphosphate reductase lar	0.953	0.226	0.638	4e-62
195456500	768	GK23355 [Drosophila willistoni] gi|19417	0.953	0.239	0.654	1e-61
195473603	812	GE26085 [Drosophila yakuba] gi|194175183	0.953	0.226	0.632	2e-61
384493683	757	ribonucleoside-diphosphate reductase lar	0.953	0.243	0.643	2e-61
194859786	812	GG23946 [Drosophila erecta] gi|190661317	0.953	0.226	0.632	5e-61
343425606	897	probable RNR1-ribonucleoside-diphosphate	0.953	0.205	0.622	7e-61
194761754	812	GF14111 [Drosophila ananassae] gi|190616	0.953	0.226	0.632	1e-60

>gi|91080433|ref|XP_968671.1| PREDICTED: similar to AGAP010198-PA [Tribolium castaneum] gi|270005754|gb|EFA02202.1| hypothetical protein TcasGA2_TC007859 [Tribolium castaneum]

 Score =  248 bits (634), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 124/188 (65%), Positives = 149/188 (79%), Gaps = 4/188 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V ITLKVI GLYPGVTTV+LD LAAETAA      HPDYA+L    +   NLHKETKK +
Sbjct: 44  VSITLKVISGLYPGVTTVELDTLAAETAAMMT-TNHPDYAIL-AARIAVSNLHKETKKQF 101

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+VI++L+  V+ +TG +T MISD+H+ I+MKNADRLNS IIYDRDF+YN+FGFKTLERS
Sbjct: 102 SDVIDDLHKAVSSKTGRKTQMISDEHHAIVMKNADRLNSCIIYDRDFSYNYFGFKTLERS 161

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG++VERPQHMLMRVAVGIHG DID+AIETYN +SEKYFTHA+  +    A +  
Sbjct: 162 YLLKINGKIVERPQHMLMRVAVGIHGSDIDSAIETYNYMSEKYFTHASPTLF--SAATPK 219

Query: 181 PRFSSFSL 188
           P+ SS  L
Sbjct: 220 PQLSSCFL 227

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195339753|ref|XP_002036481.1| GM11750 [Drosophila sechellia] gi|194130361|gb|EDW52404.1| GM11750 [Drosophila sechellia]

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 120/188 (63%), Positives = 145/188 (77%), Gaps = 4/188 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V ITL+VI GLY GVTT +LDNLAAE AA      HPDYA+L    +   NLHKETKK +
Sbjct: 48  VTITLQVINGLYCGVTTQELDNLAAEIAAGL-TCNHPDYAIL-AARIAVSNLHKETKKAF 105

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V E+LYN VNKET  + P++S+ HY ++ KNA RLNS+IIYDRDF YN+FGFKTLERS
Sbjct: 106 SDVFEDLYNHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERS 165

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG++ ERPQHMLMRVA+GIHGEDIDAA+ETYNLLSE+YFTHA+  +    A +  
Sbjct: 166 YLLKRNGKIAERPQHMLMRVAIGIHGEDIDAAVETYNLLSERYFTHASPTLFA--AATNR 223

Query: 181 PRFSSFSL 188
           P+ SS  L
Sbjct: 224 PQLSSCFL 231

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195578133|ref|XP_002078920.1| GD22272 [Drosophila simulans] gi|194190929|gb|EDX04505.1| GD22272 [Drosophila simulans]

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 120/188 (63%), Positives = 145/188 (77%), Gaps = 4/188 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V ITL+VI GLY GVTT +LDNLAAE AA      HPDYA+L    +   NLHKETKK +
Sbjct: 48  VTITLQVINGLYCGVTTQELDNLAAEIAAGL-TCNHPDYAIL-AARIAVSNLHKETKKAF 105

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V E+LYN VNKET  + P++S+ HY ++ KNA RLNS+IIYDRDF YN+FGFKTLERS
Sbjct: 106 SDVFEDLYNHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERS 165

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG++ ERPQHMLMRVA+GIHGEDIDAA+ETYNLLSE+YFTHA+  +    A +  
Sbjct: 166 YLLKRNGKIAERPQHMLMRVAIGIHGEDIDAAVETYNLLSERYFTHASPTLFA--AATNR 223

Query: 181 PRFSSFSL 188
           P+ SS  L
Sbjct: 224 PQLSSCFL 231

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17352481|ref|NP_477027.1| ribonucleoside diphosphate reductase large subunit [Drosophila melanogaster] gi|12644286|sp|P48591.2|RIR1_DROME RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleoside-diphosphate reductase subunit M1; AltName: Full=Ribonucleotide reductase large subunit gi|4928448|gb|AAD33590.1|AF132143_1 ribonucleoside reductase M1 subunit [Drosophila melanogaster] gi|21430662|gb|AAM51009.1| RE58177p [Drosophila melanogaster] gi|22946135|gb|AAF52913.2| ribonucleoside diphosphate reductase large subunit [Drosophila melanogaster] gi|220942628|gb|ACL83857.1| RnrL-PA [synthetic construct]

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 120/188 (63%), Positives = 145/188 (77%), Gaps = 4/188 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V ITL+VI GLY GVTT +LDNLAAE AA      HPDYA+L    +   NLHKETKK +
Sbjct: 48  VTITLQVINGLYCGVTTQELDNLAAEIAAGL-TCNHPDYAIL-AARIAVSNLHKETKKAF 105

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V E+LYN VNKET  + P++S+ HY ++ KNA RLNS+IIYDRDF YN+FGFKTLERS
Sbjct: 106 SDVFEDLYNHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERS 165

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG++ ERPQHMLMRVA+GIHGEDIDAA+ETYNLLSE+YFTHA+  +    A +  
Sbjct: 166 YLLKRNGKIAERPQHMLMRVAIGIHGEDIDAAVETYNLLSERYFTHASPTLFA--AATNR 223

Query: 181 PRFSSFSL 188
           P+ SS  L
Sbjct: 224 PQLSSCFL 231

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195456500|ref|XP_002075166.1| GK23355 [Drosophila willistoni] gi|194171251|gb|EDW86152.1| GK23355 [Drosophila willistoni]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/188 (65%), Positives = 143/188 (76%), Gaps = 4/188 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V ITL+VI GLY GVTT +LDNLAAE AA      H DYA+L    +   NLHKETKK +
Sbjct: 31  VSITLQVINGLYCGVTTQELDNLAAEIAAGL-TCNHADYAIL-AARIAVSNLHKETKKVF 88

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           SEV EELY+ VNKET   +PM+S  HY I+  NADRLNSA+IYDRDF YN+FGFKTLERS
Sbjct: 89  SEVFEELYHHVNKETNNPSPMVSSYHYNIVKNNADRLNSAMIYDRDFGYNYFGFKTLERS 148

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG+V ERPQHMLMRVA+GIHGEDIDAA+ETYNLLSE+YFTHA+  +    A +  
Sbjct: 149 YLLKINGKVAERPQHMLMRVAIGIHGEDIDAAVETYNLLSERYFTHASPTLFA--AATNR 206

Query: 181 PRFSSFSL 188
           P+ SS  L
Sbjct: 207 PQLSSCFL 214

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195473603|ref|XP_002089082.1| GE26085 [Drosophila yakuba] gi|194175183|gb|EDW88794.1| GE26085 [Drosophila yakuba]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/188 (63%), Positives = 144/188 (76%), Gaps = 4/188 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V ITL+VI GLY GVTT +LDNLAAE AA      HPDYA+L    +   NLHKETKK +
Sbjct: 48  VTITLQVINGLYCGVTTQELDNLAAEIAAGL-TCNHPDYAIL-AARIAVSNLHKETKKVF 105

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V E+LY  VNKET  + P++S+ HY ++ KNA RLNS+IIYDRDF YN+FGFKTLERS
Sbjct: 106 SDVFEDLYEHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERS 165

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG++ ERPQHMLMRVA+GIHGEDIDAA+ETYNLLSE+YFTHA+  +    A +  
Sbjct: 166 YLLKRNGKIAERPQHMLMRVAIGIHGEDIDAAVETYNLLSERYFTHASPTLFA--AATNR 223

Query: 181 PRFSSFSL 188
           P+ SS  L
Sbjct: 224 PQLSSCFL 231

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|384493683|gb|EIE84174.1| ribonucleoside-diphosphate reductase large chain [Rhizopus delemar RA 99-880]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/188 (64%), Positives = 148/188 (78%), Gaps = 4/188 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V IT KVI G+Y GVTTV+LDNLAAETAA Y   +HPDYA+L    +   NLHKETKK +
Sbjct: 7   VAITQKVISGVYEGVTTVELDNLAAETAA-YMTTRHPDYALL-AARIAISNLHKETKKVF 64

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+VIE+LYN VN +T   +PMISD  Y+++  NA+RLNSAIIYDRDF YNFFGFKTLERS
Sbjct: 65  SQVIEDLYNYVNPKTNKHSPMISDTTYKVVQDNAERLNSAIIYDRDFKYNFFGFKTLERS 124

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K +G+  ERPQH++MRVA+GIHGEDIDAAIETYNL+SEK+FTHA+  +   +A +  
Sbjct: 125 YLLKIDGKTAERPQHLIMRVAIGIHGEDIDAAIETYNLMSEKFFTHASPTLF--NAGTPR 182

Query: 181 PRFSSFSL 188
           P+ SS  L
Sbjct: 183 PQMSSCFL 190

Source: Rhizopus delemar RA 99-880

Species: Rhizopus delemar

Genus: Rhizopus

Family: Rhizopodaceae

Order: Mucorales

Superkingdom: Eukaryota

>gi|194859786|ref|XP_001969450.1| GG23946 [Drosophila erecta] gi|190661317|gb|EDV58509.1| GG23946 [Drosophila erecta]

 Score =  239 bits (609), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 119/188 (63%), Positives = 144/188 (76%), Gaps = 4/188 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V ITL+VI GLY GVTT +LDNLAAE AA      HPDYA+L    +   NLHKETKK +
Sbjct: 48  VTITLQVINGLYCGVTTQELDNLAAEIAAGL-TCYHPDYAIL-AARIAVSNLHKETKKAF 105

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V E+LYN VNKET  +  ++S+ HY ++ KNA RLNS+IIYDRDF YN+FGFKTLERS
Sbjct: 106 SDVFEDLYNHVNKETNQKVSLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERS 165

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG++ ERPQHMLMRVA+GIHGEDIDAA+ETYNLLSE+YFTHA+  +    A +  
Sbjct: 166 YLLKTNGKIAERPQHMLMRVAIGIHGEDIDAAVETYNLLSERYFTHASPTLFA--AATNR 223

Query: 181 PRFSSFSL 188
           P+ SS  L
Sbjct: 224 PQLSSCFL 231

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|343425606|emb|CBQ69140.1| probable RNR1-ribonucleoside-diphosphate reductase large subunit [Sporisorium reilianum SRZ2]

 Score =  238 bits (608), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 117/188 (62%), Positives = 151/188 (80%), Gaps = 4/188 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           +EIT KVI G+Y GVTTV+LDNLAAETAA Y+   HPDYAVL    +   NLHKET+K +
Sbjct: 38  IEITRKVIDGIYEGVTTVELDNLAAETAA-YKTTTHPDYAVL-AARIAISNLHKETRKNF 95

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V+++LY  VN + G  +PMISD  Y+++M++ D+L+SAIIY+RDF+YNFFGFKTLERS
Sbjct: 96  SQVVQDLYEYVNPKNGRHSPMISDTTYKVVMEHKDQLDSAIIYERDFHYNFFGFKTLERS 155

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL++ NG+V ERPQHMLMRVAVGIHG+DID+AIETYNL+S+KYFTHA+  +   +A +  
Sbjct: 156 YLLRINGKVAERPQHMLMRVAVGIHGQDIDSAIETYNLMSQKYFTHASPTLF--NAGTPH 213

Query: 181 PRFSSFSL 188
           P+ SS  L
Sbjct: 214 PQLSSCFL 221

Source: Sporisorium reilianum SRZ2

Species: Sporisorium reilianum

Genus: Sporisorium

Family: Ustilaginaceae

Order: Ustilaginales

Class: Ustilaginomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|194761754|ref|XP_001963091.1| GF14111 [Drosophila ananassae] gi|190616788|gb|EDV32312.1| GF14111 [Drosophila ananassae]

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 119/188 (63%), Positives = 143/188 (76%), Gaps = 4/188 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V ITL+VI GLY GVTT +LDNLAAE +A      H DYA+L    +   NLHKET+K +
Sbjct: 48  VTITLQVINGLYCGVTTQELDNLAAEISAGL-TCNHADYAIL-AARIAVSNLHKETRKVF 105

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V E LY  VNKET  R P++S+ HY ++ KNADRLNS+IIYDRDF YN+FGFKTLERS
Sbjct: 106 SDVFEALYTHVNKETNLRAPLVSEFHYNVVKKNADRLNSSIIYDRDFGYNYFGFKTLERS 165

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG+V ERPQHMLMRVA+GIHGEDIDAA+ETYNLLSE+YFTHA+  +    A +  
Sbjct: 166 YLLKINGKVAERPQHMLMRVAIGIHGEDIDAAVETYNLLSERYFTHASPTLFA--AATNR 223

Query: 181 PRFSSFSL 188
           P+ SS  L
Sbjct: 224 PQLSSCFL 231

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
FB|FBgn0011703	812	RnrL "Ribonucleoside diphospha	0.937	0.222	0.643	6.4e-60
MGI|MGI:98180	792	Rrm1 "ribonucleotide reductase	0.968	0.236	0.623	1.5e-58
RGD|1592569	792	Rrm1 "ribonucleotide reductase	0.968	0.236	0.623	2.5e-58
UNIPROTKB|E2R8P1	792	RRM1 "Ribonucleoside-diphospha	0.968	0.236	0.617	4e-58
UNIPROTKB|P23921	792	RRM1 "Ribonucleoside-diphospha	0.968	0.236	0.612	8.4e-58
POMBASE|SPAC1F7.05	811	cdc22 "ribonucleoside reductas	0.937	0.223	0.627	8.4e-58
UNIPROTKB|F1MSF1	791	RRM1 "Ribonucleoside-diphospha	0.968	0.236	0.612	1.1e-57
ZFIN|ZDB-GENE-990415-247	794	rrm1 "ribonucleotide reductase	0.968	0.235	0.633	1.1e-57
UNIPROTKB|Q5R919	792	RRM1 "Ribonucleoside-diphospha	0.968	0.236	0.607	2.8e-57
UNIPROTKB|E1C4Q0	784	E1C4Q0 "Ribonucleoside-diphosp	0.932	0.229	0.630	5.9e-57

FB|FBgn0011703 RnrL "Ribonucleoside diphosphate reductase large subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 119/185 (64%), Positives = 144/185 (77%)

Query:     1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
             V ITL+VI GLY GVTT +LDNLAAE AA      HPDYA+L    +   NLHKETKK +
Sbjct:    48 VTITLQVINGLYCGVTTQELDNLAAEIAAGLT-CNHPDYAIL-AARIAVSNLHKETKKAF 105

Query:    61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
             S+V E+LYN VNKET  + P++S+ HY ++ KNA RLNS+IIYDRDF YN+FGFKTLERS
Sbjct:   106 SDVFEDLYNHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERS 165

Query:   121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
             YL+K NG++ ERPQHMLMRVA+GIHGEDIDAA+ETYNLLSE+YFTHA+  +    A +  
Sbjct:   166 YLLKRNGKIAERPQHMLMRVAIGIHGEDIDAAVETYNLLSERYFTHASPTLFA--AATNR 223

Query:   181 PRFSS 185
             P+ SS
Sbjct:   224 PQLSS 228

GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=ISS

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=ISS;NAS

GO:0006260 "DNA replication" evidence=IEA;NAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0042246 "tissue regeneration" evidence=IMP

MGI|MGI:98180 Rrm1 "ribonucleotide reductase M1" [Mus musculus (taxid:10090)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 119/191 (62%), Positives = 148/191 (77%)

Query:     2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS 61
             +IT+KVI+GLY GVTTV+LD LAAETAA     KHPDYA+L    +   NLHKETKK +S
Sbjct:    38 QITMKVIQGLYSGVTTVELDTLAAETAATLTT-KHPDYAIL-AARIAVSNLHKETKKVFS 95

Query:    62 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSY 121
             +V+E+LYN +N   G  +PM++    +I+M N DRLNSAIIYDRDF+YN+FGFKTLERSY
Sbjct:    96 DVMEDLYNYINPHNGRHSPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSY 155

Query:   122 LMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSP 181
             L+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSEK+FTHA+  +   +A +  P
Sbjct:   156 LLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSEKWFTHASPTLF--NAGTNRP 213

Query:   182 RFSSFSLYGVR 192
             + SS  L  ++
Sbjct:   214 QLSSCFLLSMK 224

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0017076 "purine nucleotide binding" evidence=IDA

GO:0051259 "protein oligomerization" evidence=IPI

GO:0051290 "protein heterotetramerization" evidence=IPI

GO:0055114 "oxidation-reduction process" evidence=IEA

RGD|1592569 Rrm1 "ribonucleotide reductase M1" [Rattus norvegicus (taxid:10116)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 119/191 (62%), Positives = 148/191 (77%)

Query:     2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS 61
             +IT+KVI+GLY GVTTV+LD LAAETAA     KHPDYA+L    +   NLHKETKK +S
Sbjct:    38 QITMKVIQGLYSGVTTVELDTLAAETAATLTT-KHPDYAIL-AARIAVSNLHKETKKVFS 95

Query:    62 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSY 121
             +V+E+LYN +N   G  +PM++    EI+M + DRLNSAIIYDRDF+YN+FGFKTLERSY
Sbjct:    96 DVMEDLYNYINPHNGRHSPMVASSTLEIVMAHKDRLNSAIIYDRDFSYNYFGFKTLERSY 155

Query:   122 LMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSP 181
             L+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSEK+FTHA+  +   +A +  P
Sbjct:   156 LLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSEKWFTHASPTLF--NAGTNRP 213

Query:   182 RFSSFSLYGVR 192
             + SS  L  ++
Sbjct:   214 QLSSCFLLSMK 224

GO:0000278 "mitotic cell cycle" evidence=IEP

GO:0003674 "molecular_function" evidence=ND

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006206 "pyrimidine nucleobase metabolic process" evidence=IEP

GO:0008584 "male gonad development" evidence=IEP

GO:0010212 "response to ionizing radiation" evidence=IEP

GO:0021846 "cell proliferation in forebrain" evidence=IEP

GO:0042995 "cell projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0060041 "retina development in camera-type eye" evidence=IEP

UNIPROTKB|E2R8P1 RRM1 "Ribonucleoside-diphosphate reductase" [Canis lupus familiaris (taxid:9615)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 118/191 (61%), Positives = 148/191 (77%)

Query:     2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS 61
             +IT+KVI+GLY GVTTV+LD LAAETAA     KHPDYA+L    +   NLHKETKK +S
Sbjct:    38 QITMKVIQGLYSGVTTVELDTLAAETAATLTT-KHPDYAIL-AARIAVSNLHKETKKVFS 95

Query:    62 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSY 121
             +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFKTLERSY
Sbjct:    96 DVMEDLYNYINPHNGRHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSY 155

Query:   122 LMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSP 181
             L+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSEK+FTHA+  +   +A +  P
Sbjct:   156 LLKINGKVAERPQHMLMRVSVGIHEEDIDAAIETYNLLSEKWFTHASPTLF--NAGTNRP 213

Query:   182 RFSSFSLYGVR 192
             + SS  L  ++
Sbjct:   214 QLSSCFLLSMK 224

GO:0006260 "DNA replication" evidence=IEA

GO:0051290 "protein heterotetramerization" evidence=IEA

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=IEA

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=IEA

GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P23921 RRM1 "Ribonucleoside-diphosphate reductase large subunit" [Homo sapiens (taxid:9606)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 117/191 (61%), Positives = 148/191 (77%)

Query:     2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS 61
             +IT+KVI+GLY GVTTV+LD LAAETAA     KHPDYA+L    +   NLHKETKK +S
Sbjct:    38 QITMKVIQGLYSGVTTVELDTLAAETAATLTT-KHPDYAIL-AARIAVSNLHKETKKVFS 95

Query:    62 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSY 121
             +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFKTLERSY
Sbjct:    96 DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSY 155

Query:   122 LMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSP 181
             L+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSE++FTHA+  +   +A +  P
Sbjct:   156 LLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLF--NAGTNRP 213

Query:   182 RFSSFSLYGVR 192
             + SS  L  ++
Sbjct:   214 QLSSCFLLSMK 224

GO:0005524 "ATP binding" evidence=IEA

GO:0051290 "protein heterotetramerization" evidence=IEA

GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=NAS

GO:0006260 "DNA replication" evidence=IEA;NAS

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=ISS;NAS

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=ISS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

POMBASE|SPAC1F7.05 cdc22 "ribonucleoside reductase large subunit Cdc22" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 116/185 (62%), Positives = 148/185 (80%)

Query:     1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
             VEIT KVI G+YPGVTT++LDNLAAETAA     KHPDYA+L    +   NLHK+T+K +
Sbjct:    37 VEITQKVISGVYPGVTTIELDNLAAETAATMTT-KHPDYAIL-AARIAVSNLHKQTEKVF 94

Query:    61 SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
             S V+++L++ VN +T    PMISDK Y+I+MK+ D L+SAIIYDRDF YNFFGFKTLERS
Sbjct:    95 STVVQQLHDYVNPKTDKPAPMISDKIYDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERS 154

Query:   121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
             YL++ +G+V ERPQHM+MRVAVGIHGEDI+AAIETYNL+S++YFTHA+  +   +A +  
Sbjct:   155 YLLRIDGKVAERPQHMIMRVAVGIHGEDIEAAIETYNLMSQRYFTHASPTLF--NAGTPR 212

Query:   181 PRFSS 185
             P+ SS
Sbjct:   213 PQLSS 217

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=ISS;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=ISM

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=IEA

GO:0006213 "pyrimidine nucleoside metabolic process" evidence=IC

GO:0007090 "regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0009212 "pyrimidine deoxyribonucleoside triphosphate biosynthetic process" evidence=IC

GO:0009216 "purine deoxyribonucleoside triphosphate biosynthetic process" evidence=IC

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=ISS

GO:0042278 "purine nucleoside metabolic process" evidence=IC

GO:0090329 "regulation of DNA-dependent DNA replication" evidence=IMP

UNIPROTKB|F1MSF1 RRM1 "Ribonucleoside-diphosphate reductase" [Bos taurus (taxid:9913)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 117/191 (61%), Positives = 148/191 (77%)

Query:     2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS 61
             +IT+KVI+GLY GVTTV+LD LAAETAA     KHPDYA+L    +   NLHKETKK +S
Sbjct:    38 QITMKVIQGLYSGVTTVELDTLAAETAATLTT-KHPDYAIL-AARIAVSNLHKETKKVFS 95

Query:    62 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSY 121
             +V+E+L+N +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFKTLERSY
Sbjct:    96 DVMEDLFNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSY 155

Query:   122 LMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSP 181
             L+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSEK+FTHA+  +   +A +  P
Sbjct:   156 LLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSEKWFTHASPTLF--NAGTNRP 213

Query:   182 RFSSFSLYGVR 192
             + SS  L  ++
Sbjct:   214 QLSSCFLLSMK 224

GO:0006260 "DNA replication" evidence=IEA

GO:0051290 "protein heterotetramerization" evidence=IEA

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=IEA

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=IEA

GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-990415-247 rrm1 "ribonucleotide reductase M1 polypeptide" [Danio rerio (taxid:7955)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 121/191 (63%), Positives = 147/191 (76%)

Query:     2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS 61
             +IT+KVI+GLY GVTTV+LD LAAETAA     KHPDYA+L    +   NLHKETKK +S
Sbjct:    38 QITMKVIQGLYSGVTTVELDTLAAETAAT-STTKHPDYAIL-AARIAVSNLHKETKKVFS 95

Query:    62 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSY 121
             EV+E+LYN VN      +PMIS +  +I++ N DRLNSAIIYDRDF+YNFFGFKTLERSY
Sbjct:    96 EVMEDLYNYVNPLNSRHSPMISKETLDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERSY 155

Query:   122 LMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSP 181
             L+K NG+V ERPQHMLMRV+VGIH EDI AAIETYNLLSEK+FTHA+  +   +A +  P
Sbjct:   156 LLKINGKVAERPQHMLMRVSVGIHKEDIAAAIETYNLLSEKWFTHASPTLF--NAGTNRP 213

Query:   182 RFSSFSLYGVR 192
             + SS  L  ++
Sbjct:   214 QLSSCFLLAMK 224

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=IEA;ISS

GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|Q5R919 RRM1 "Ribonucleoside-diphosphate reductase large subunit" [Pongo abelii (taxid:9601)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 116/191 (60%), Positives = 147/191 (76%)

Query:     2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS 61
             +IT+KVI+GLY GVTTV+LD LAAETAA     KHPDYA+L    +   NLHKE KK +S
Sbjct:    38 QITMKVIQGLYSGVTTVELDTLAAETAATLTT-KHPDYAIL-AARIAVSNLHKEAKKVFS 95

Query:    62 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSY 121
             +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFKTLERSY
Sbjct:    96 DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSY 155

Query:   122 LMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSP 181
             L+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSE++FTHA+  +   +A +  P
Sbjct:   156 LLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLF--NAGTNRP 213

Query:   182 RFSSFSLYGVR 192
             + SS  L  ++
Sbjct:   214 QLSSCFLLSMK 224

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=ISS

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=ISS

UNIPROTKB|E1C4Q0 E1C4Q0 "Ribonucleoside-diphosphate reductase" [Gallus gallus (taxid:9031)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 116/184 (63%), Positives = 144/184 (78%)

Query:     2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS 61
             +IT+KVI+GLY GVTTV+LD LAAETAA     KHPDYA+L    +   NLHKETKK +S
Sbjct:    38 QITMKVIQGLYSGVTTVELDTLAAETAATLTT-KHPDYAIL-AARIAVSNLHKETKKVFS 95

Query:    62 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSY 121
             +V+++LYN +N   G  +PMIS +  +I++ N DRLNSAIIYDRDF+YN+FGFKTLERSY
Sbjct:    96 DVMDDLYNYINPHNGKHSPMISKETLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSY 155

Query:   122 LMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSP 181
             L+K N +V ERPQHMLMRVAVGIH  DIDAAIETYNLLSE++FTHA+  +   +A +  P
Sbjct:   156 LLKINSKVAERPQHMLMRVAVGIHKNDIDAAIETYNLLSERWFTHASPTLF--NAGTNRP 213

Query:   182 RFSS 185
             + SS
Sbjct:   214 QLSS 217

GO:0005524 "ATP binding" evidence=IEA

GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=IEA

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=IEA

GO:0051290 "protein heterotetramerization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P79732	RIR1_DANRE	1, ., 1, 7, ., 4, ., 1	0.6302	0.9740	0.2367	yes	N/A
Q03604	RIR1_CAEEL	1, ., 1, 7, ., 4, ., 1	0.5638	0.9533	0.2335	yes	N/A
P48591	RIR1_DROME	1, ., 1, 7, ., 4, ., 1	0.6382	0.9533	0.2266	yes	N/A
P07742	RIR1_MOUSE	1, ., 1, 7, ., 4, ., 1	0.6197	0.9740	0.2373	yes	N/A
P21524	RIR1_YEAST	1, ., 1, 7, ., 4, ., 1	0.5625	0.9740	0.2117	yes	N/A
P36602	RIR1_SCHPO	1, ., 1, 7, ., 4, ., 1	0.6223	0.9533	0.2268	yes	N/A
Q9SJ20	RIR1_ARATH	1, ., 1, 7, ., 4, ., 1	0.5468	0.9740	0.2303	yes	N/A
Q54Q71	RIR1_DICDI	1, ., 1, 7, ., 4, ., 1	0.5104	0.9740	0.2160	yes	N/A
Q5R919	RIR1_PONAB	1, ., 1, 7, ., 4, ., 1	0.6041	0.9740	0.2373	yes	N/A
P23921	RIR1_HUMAN	1, ., 1, 7, ., 4, ., 1	0.6093	0.9740	0.2373	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.17.4.1	LOW CONFIDENCE prediction!
3rd Layer	1.17.4	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	193
PLN02437	813	PLN02437, PLN02437, ribonucleoside--diphosphate re	2e-80
pfam00317	79	pfam00317, Ribonuc_red_lgN, Ribonucleotide reducta	2e-15
COG0209	651	COG0209, NrdA, Ribonucleotide reductase, alpha sub	3e-15
cd01679	460	cd01679, RNR_I, Class I ribonucleotide reductase	6e-12
PRK08447	789	PRK08447, PRK08447, ribonucleotide-diphosphate red	1e-10
PRK07207	965	PRK07207, PRK07207, ribonucleotide-diphosphate red	2e-10
PRK12365	1046	PRK12365, PRK12365, ribonucleotide-diphosphate red	6e-09
TIGR02506	617	TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate r	4e-08
PHA02572	753	PHA02572, nrdA, ribonucleoside-diphosphate reducta	2e-07
PRK07088	764	PRK07088, PRK07088, ribonucleotide-diphosphate red	4e-05
PRK08665	752	PRK08665, PRK08665, ribonucleotide-diphosphate red	6e-04
PRK06539	822	PRK06539, PRK06539, ribonucleotide-diphosphate red	0.002

>gnl|CDD|178056 PLN02437, PLN02437, ribonucleoside--diphosphate reductase large subunit

 Score =  254 bits (650), Expect = 2e-80
 Identities = 106/185 (57%), Positives = 143/185 (77%), Gaps = 4/185 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V +  KV  G+Y GVTT QLD LAAETAA      HPDYA+L    +   NLHK TKK++
Sbjct: 37  VLVAQKVCAGVYKGVTTSQLDELAAETAAAMTT-NHPDYAIL-AARIAVSNLHKNTKKSF 94

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           SE ++++YN VN+ +G + P+I+D  Y+IIMKNA RL+S IIYDRDF+Y++FGFKTLERS
Sbjct: 95  SETVKDMYNHVNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERS 154

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG+VVERPQHMLMRV+VGIH +DI++AI+TY+L+S+++FTHA+  +   +A +  
Sbjct: 155 YLLKVNGKVVERPQHMLMRVSVGIHKDDIESAIKTYHLMSQRWFTHASPTLF--NAGTPR 212

Query: 181 PRFSS 185
           P+ SS
Sbjct: 213 PQLSS 217

Length = 813

>gnl|CDD|215855 pfam00317, Ribonuc_red_lgN, Ribonucleotide reductase, all-alpha domain

 Score = 67.7 bits (166), Expect = 2e-15
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 107 FNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHG-----EDIDAAIETYNLLS 160
               +   K LE  YL+K+ +G V+E PQ M MRVA+ + G     + ++ A E Y+LLS
Sbjct: 1   RFLTYLAAKVLEDRYLLKDEDGEVLETPQDMFMRVALALAGAEPPEDRLELAEEFYDLLS 60

Query: 161 EKYFTHA 167
              F  A
Sbjct: 61  SLKFLPA 67

Length = 79

>gnl|CDD|223287 COG0209, NrdA, Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]

 Score = 72.8 bits (179), Expect = 3e-15
 Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 15/173 (8%)

Query: 3   ITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSE 62
             L+ + G Y G+T  +   LAA T         PD   L        +L KE  + +  
Sbjct: 1   RELRTVIGFYDGITIAENLILAALTV---IEEDDPDVQRLAARLAG-SDLRKEAVRQF-G 55

Query: 63  VIEELYNMVNKETGTRTPMISDKHYEIIMKN-ADRLNSAIIYDRDFNYNFFGFKTLERSY 121
             + L   V             +   +  +   D LN  I+ +RD  +++   K L   Y
Sbjct: 56  RFDVLDEKVFALV--ANGYYDQRLLRLYSREDLDDLNKKILLERDRQFSYAAAKVLYSRY 113

Query: 122 LMKNN--GRVVERPQHMLMRVAVGIHGED-----IDAAIETYNLLSEKYFTHA 167
           L+K+     ++E PQ + MRVA+ +   +     ++ A E Y+L+S   F  A
Sbjct: 114 LLKDEDGSEILELPQDLFMRVALLLAQNEAPERRLEWAKEFYDLMSSLRFMPA 166

Length = 651

>gnl|CDD|153088 cd01679, RNR_I, Class I ribonucleotide reductase

 Score = 62.9 bits (154), Expect = 6e-12
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 133 PQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSS 185
           PQ  LMRVA+G+   D++ A E Y+LLS++ FT A   +   +A +   + SS
Sbjct: 1   PQDRLMRVALGLASGDLEWAKEFYDLLSKQRFTPATPTLF--NAGTPRGQLSS 51

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (which is found in prokaryotes only). It is a tetrameric enzyme of two alpha and two beta subunits; this model covers the major part of the alpha or large subunit, called R1 in class Ia and R1E in class Ib. Length = 460

>gnl|CDD|236266 PRK08447, PRK08447, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 12/101 (11%)

Query: 95  DRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGEDIDA-- 151
           D LN+ I  +RD  +N+ G KTL   YL+K+ N   +E PQHM M +A+ +   ++D   
Sbjct: 123 DDLNAYIKPERDLQFNYLGIKTLYDRYLIKDRNNNPIELPQHMFMAIAMFLAQNELDPQK 182

Query: 152 -AIETYNLLSEKYFTHAADVMLRTHAMS--RSPRFSSFSLY 189
            A + Y+++S K+     +VML T  +S  R+ R    S Y
Sbjct: 183 WAKKFYDVIS-KF-----EVMLATPTLSNARTTRHQLSSCY 217

Length = 789

>gnl|CDD|235966 PRK07207, PRK07207, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 95  DRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDA--- 151
           +RL +A+  +RD  + + G +TL   Y +  +G  +E PQ   MRVA+G+   +ID    
Sbjct: 282 ERLGAALDPERDLQFTYLGLQTLYDRYFLHVDGTRIELPQAFFMRVAMGLALNEIDREAR 341

Query: 152 AIETYNLLS 160
           AIE YNLLS
Sbjct: 342 AIEFYNLLS 350

Length = 965

>gnl|CDD|171440 PRK12365, PRK12365, ribonucleotide-diphosphate reductase subunit alpha; Provisional

 Score = 54.6 bits (131), Expect = 6e-09
 Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 21/169 (12%)

Query: 11  LYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKET--KKTWSEVIEELY 68
            Y G+   ++  LA   AA     K PDYA +   ELL   ++KE   K  + E +EE +
Sbjct: 281 FYSGIKESEV-VLACIMAARANIEKEPDYAFV-AAELLLDVVYKEALGKSKYDEDLEEAH 338

Query: 69  N------MVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYL 122
                  ++  +T    P +  KHY++     D L  A+   RD  +++ G + L   Y 
Sbjct: 339 KDHFKRYILEGDTYRLNPEL--KHYDL-----DALAEALDLSRDLQFSYMGVQNLYDRYF 391

Query: 123 MKNNGRVVERPQHMLMRVAVGI---HGEDIDA-AIETYNLLSEKYFTHA 167
             + GR +E PQ   MRV++G+    G+D  + AI  YNLLS   +T A
Sbjct: 392 NHHEGRRLETPQIFWMRVSMGLALNEGQDKTSWAITFYNLLSTFRYTPA 440

Length = 1046

>gnl|CDD|233902 TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate reductase, alpha subunit

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 111 FFGFKTLERSYLMKNN--GRVVERPQHMLMRVAVGIHG-----EDIDAAIETYNLLSEKY 163
           + G K L   YL++N   G + E PQ   MRVA+G+         +  AI  Y+LLS   
Sbjct: 1   YMGLKELYNRYLLRNAATGAIYESPQEAYMRVAMGLASLEPKDTRLADAIRFYDLLSRLK 60

Query: 164 FTHAADVMLRTHAMSRSPRFSS 185
            + A   +   +A +   + SS
Sbjct: 61  ISPATPTLF--NAGTPRGQLSS 80

This model represents the alpha (large) chain of the class I ribonucleotide reductase (RNR). RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Class I RNR's generate the required radical (on tyrosine) via a "non-heme" iron cofactor which resides in the beta (small) subunit. The alpha subunit contains the catalytic and allosteric regulatory sites. The mechanism of this enzyme requires molecular oxygen. E. Coli contains two versions of this enzyme which are regulated independently (NrdAB and NrdEF, where NrdA and NrdE are the large chains ). Most organisms contain only one, but the application of the gene symbols NrdA and NrdE are somewhat arbitrary. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]. Length = 617

>gnl|CDD|222883 PHA02572, nrdA, ribonucleoside-diphosphate reductase subunit alpha; Provisional

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 21/186 (11%)

Query: 11  LYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS--EVIEELY 68
           L  G+TT  +  +  ++AA    ++ PDY  +    LL   L K+    +     I+ + 
Sbjct: 47  LRDGMTTKDIQEILIKSAADLISVEEPDYQYV-AARLLMFALRKQVYGQFEPPSFIDHIS 105

Query: 69  NMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN--N 126
             VN+  G   P I  K+     +    L S I +DRDF + + G   L+  YL+++   
Sbjct: 106 KCVNE--GKYDPEILSKYSA---EEITYLESFIDHDRDFEFTYAGAMQLKEKYLVQDRST 160

Query: 127 GRVVERPQHMLMRVAVGIHGED-----IDAAIETYNLLSEKYFTHAADVMLRTHAMSRSP 181
           G + E PQ   M +A+ +H ++     ++  I  YN +S +  +    +M    A  R+P
Sbjct: 161 GEIYETPQFAYMLIAMALHQDEPKEDRLEHVIRFYNAVSTRKISLPTPIM----AGVRTP 216

Query: 182 --RFSS 185
             +FSS
Sbjct: 217 TRQFSS 222

Length = 753

>gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 22/140 (15%)

Query: 47  LLCPNLHKETKKTW---SEVIEELYNMVNKETGTRTPMISDKHY-EIIMKNADR-----L 97
           L   +L+KE +      S    + Y +V K       ++ +K Y E +++N  +     L
Sbjct: 94  LYVFDLYKEARINRHYNSFGYGDYYELVKK-------LVEEKLYGEYLLQNYSKEEIKEL 146

Query: 98  NSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGEDIDA----- 151
              I  +RDF +N+ G K L   YL+K  N  ++E PQ   M +A+ +   +        
Sbjct: 147 EKYIKPERDFLFNYEGLKLLADRYLVKGFNREILELPQERFMGIAMHLAIPEGKEKRVYY 206

Query: 152 AIETYNLLSEKYFTHAADVM 171
           A + Y+LLSE   T A   +
Sbjct: 207 AKKFYDLLSELKATVATPTL 226

Length = 764

>gnl|CDD|236330 PRK08665, PRK08665, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 10/58 (17%)

Query: 117 LERSYLMKN-NGRVVERPQHMLMRVAVGI--------HGEDIDA-AIETYNLLSEKYF 164
           LE+ YL K+ +G+ +E P+ M  RVA  I           D++A A   Y+L++   F
Sbjct: 20  LEKRYLKKDEDGKPIETPEDMFRRVARTIAAAELIYDSKADVEALADRFYDLMTSLEF 77

Length = 752

>gnl|CDD|180610 PRK06539, PRK06539, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 95  DRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGEDID--- 150
           +RL +A+   RD    + G  TL   Y ++  NG  +E PQ+  MR+A+G+   + D   
Sbjct: 134 ERLAAALDPTRDELLKYIGVVTLNNRYGIRARNGDALEVPQYFWMRIAMGLSLNEDDPTS 193

Query: 151 AAIETYNLLSE 161
           +A+  Y  +S+
Sbjct: 194 SALAFYEKMSK 204

Length = 822

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
KOG1112|consensus	796		100.0
PLN02437	813	ribonucleoside--diphosphate reductase large subuni	100.0
PHA02572	753	nrdA ribonucleoside-diphosphate reductase subunit	100.0
PRK06539	822	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK07088	764	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK12364	842	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK09103	758	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK09209	761	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK07207	965	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK12365	1046	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK08447	789	ribonucleotide-diphosphate reductase subunit alpha	100.0
COG0209	651	NrdA Ribonucleotide reductase, alpha subunit [Nucl	99.96
PRK07187	721	ribonucleotide-diphosphate reductase subunit alpha	99.96
PRK07632	699	ribonucleotide-diphosphate reductase subunit alpha	99.93
PRK08188	714	ribonucleotide-diphosphate reductase subunit alpha	99.93
PRK06406	771	ribonucleotide-diphosphate reductase subunit alpha	99.93
PRK07306	720	ribonucleotide-diphosphate reductase subunit alpha	99.92
PF00317	83	Ribonuc_red_lgN: Ribonucleotide reductase, all-alp	99.91
PRK09102	601	ribonucleotide-diphosphate reductase subunit alpha	99.87
PRK08665	752	ribonucleotide-diphosphate reductase subunit alpha	99.83
TIGR02506	617	NrdE_NrdA ribonucleoside-diphosphate reductase, al	99.81
PRK08332	1740	ribonucleotide-diphosphate reductase subunit alpha	99.8
TIGR02510	571	NrdE-prime ribonucleoside-diphosphate reductase, a	99.79
PRK06948	595	ribonucleotide reductase-like protein; Provisional	99.71
TIGR02504	586	NrdJ_Z ribonucleoside-diphosphate reductase, adeno	99.71
PRK06556	953	vitamin B12-dependent ribonucleotide reductase; Va	99.45
PRK08115	858	ribonucleotide-diphosphate reductase subunit alpha	99.43
cd01679	460	RNR_I Class I ribonucleotide reductase. Ribonucleo	98.81
PRK07562	1220	ribonucleotide-diphosphate reductase subunit alpha	98.45
PF03477	90	ATP-cone: ATP cone domain; InterPro: IPR005144 The	97.02

>KOG1112|consensus

Probab=100.00  E-value=4e-56  Score=405.14  Aligned_cols=188  Identities=66%  Similarity=1.006  Sum_probs=184.9

Q ss_pred             ChhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCC
Q psy15804          1 VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTP   80 (193)
Q Consensus         1 ~~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~   80 (193)
                      ++|+++|++|+|.||||.||+++++++|++| ++.||||+.+| ||+.+++|||++.+.|+++++++|+++++.+|...|
T Consensus        37 v~vt~kvisG~y~gvTt~eldnlaaEtaA~m-tt~HPdYa~la-aRIavSnlHk~T~k~Fs~vi~~l~~~vn~~tgk~ap  114 (796)
T KOG1112|consen   37 VEVTQKVISGVYEGVTTVELDNLAAETAASM-TTKHPDYAILA-ARIAVSNLHKQTKKVFSEVIEDLHNHVNPHTGKHAP  114 (796)
T ss_pred             HHHHHHHHhhhcCCchhHhHHHHHHHHHHHh-hcCCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcCC
Confidence            3689999999999999999999999999999 99999999999 999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhcccccCCeecCCHHHHHHHHHHHhhhccHHHHHHHHHHHH
Q psy15804         81 MISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLS  160 (193)
Q Consensus        81 ~l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~~g~~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls  160 (193)
                      ++++++++++.+|.++|+++|.|+||+.|+|||+++|+++||+|.+|++.|+||||+||||+++|++|++.|+++|++||
T Consensus       115 misd~~y~Iv~~n~d~lnsaIiYdrDf~y~yFGfkTLerSYLlking~v~ERPQhm~MRVa~gIH~~Die~aietYnLmS  194 (796)
T KOG1112|consen  115 MISDEVYNIVMENKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGEVAERPQHMLMRVALGIHGEDIEAAIETYNLMS  194 (796)
T ss_pred             cccHHHHHHHHhhhhhhccceeeccccceeecchhHHHHHHHHHhCCchhcChHhHhHHhhhccchhhHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCccccCCccccccccCCCCCCccceeeeccC
Q psy15804        161 EKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR  192 (193)
Q Consensus       161 ~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~  192 (193)
                      .++|+||||||||  |||+++|||||||++|.
T Consensus       195 ~ryfTHAsPTLfn--agt~rPQlsSCFL~tmk  224 (796)
T KOG1112|consen  195 ERYFTHASPTLFN--AGTPRPQLSSCFLLTMK  224 (796)
T ss_pred             hhhhccCCchhhh--cCCCCccccceEEEEec
Confidence            9999999999999  99999999999999875

>PLN02437 ribonucleoside--diphosphate reductase large subunit

Probab=100.00  E-value=1.5e-47  Score=370.84  Aligned_cols=186  Identities=57%  Similarity=0.937  Sum_probs=178.5

Q ss_pred             hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCCC
Q psy15804          2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPM   81 (193)
Q Consensus         2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~   81 (193)
                      .++.++..+++|||||+||++++|++|+++ ++.||||+++| |||++.+|||++.++|++.++.+|+++...+|+..|+
T Consensus        38 ~~~~~~~~~~~~~~t~~el~~~~~~~a~~~-~~~~p~y~~~A-arl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (813)
T PLN02437         38 LVAQKVCAGVYKGVTTSQLDELAAETAAAM-TTNHPDYAILA-ARIAVSNLHKNTKKSFSETVKDMYNHVNERSGLKAPL  115 (813)
T ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHHHHh-cccCCcHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhh
Confidence            467889999999999999999999999999 88899999999 9999999999999999998899999877777888899


Q ss_pred             CChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhcccccCCeecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHh
Q psy15804         82 ISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSE  161 (193)
Q Consensus        82 l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~~g~~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~  161 (193)
                      +++++++|+.+|+++|++.|+++||+.|+|+|+++|+++||+|++|.++|+||+||||||+++|.++.+++++||++||+
T Consensus       116 ~~~~~~~~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~l~~~~~~~a~~~Y~~ls~  195 (813)
T PLN02437        116 IADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVNGKVVERPQHMLMRVSVGIHKDDIESAIKTYHLMSQ  195 (813)
T ss_pred             cCHHHHHHHHHHHHHHHHHhCcccccCCCHHHHHHHHHhheecCCCCcccCHHHHHHHHHHHHcccCHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999998888999999999999999999999999999999999


Q ss_pred             CccccCCccccccccCCCCCCccceeeecc
Q psy15804        162 KYFTHAADVMLRTHAMSRSPRFSSFSLYGV  191 (193)
Q Consensus       162 ~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~  191 (193)
                      ++|+||||||+|  |||+++|||||||+++
T Consensus       196 ~~f~~aTPtL~n--aGt~~~qlsSCFl~~~  223 (813)
T PLN02437        196 RWFTHASPTLFN--AGTPRPQLSSCFLICM  223 (813)
T ss_pred             CCcccCCchhhc--CCCCCCCcceeeecCC
Confidence            999999999999  9999999999999986

>PHA02572 nrdA ribonucleoside-diphosphate reductase subunit alpha; Provisional

Probab=100.00  E-value=1.2e-45  Score=355.46  Aligned_cols=183  Identities=22%  Similarity=0.330  Sum_probs=166.8

Q ss_pred             hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHH-HHHHHHHhhhhccCccCC
Q psy15804          2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSE-VIEELYNMVNKETGTRTP   80 (193)
Q Consensus         2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~-~~~~~~~~~~~~~~~~~~   80 (193)
                      +|+.++.+++++||||+||++++|++|+++|+..||||++|| ||+++.+|||++.++|.. .+....     +.+++.|
T Consensus        38 ~l~~~~~~~~~~~~~~~e~~~~~~~~a~~~~~~~~pdy~~~A-aRl~~~~l~k~~~~~~~~~~~~~~~-----~~~~~~~  111 (753)
T PHA02572         38 ELEENSKIQLRDGMTTKDIQEILIKSAADLISVEEPDYQYVA-ARLLMFALRKQVYGQFEPPSFIDHI-----SKCVNEG  111 (753)
T ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHHHHhCCccCccHHHHH-HHHHHHHHHHHHhcccchhhHHHHH-----HHHHhcC
Confidence            688999999999999999999999999999778999999999 999999999999987742 223232     2356678


Q ss_pred             CCChHHHH-HHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc--CCeecCCHHHHHHHHHHHhhhcc-----HHHH
Q psy15804         81 MISDKHYE-IIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGIHGED-----IDAA  152 (193)
Q Consensus        81 ~l~~~~~~-~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~--~g~~~E~pq~~~mrVA~~~~~~~-----~~~~  152 (193)
                      ++++++++ |+.+|+++|+++|+|+||+.|+|+|+++|++|||+|+  +|+++|+||+||||||+++|.++     ++++
T Consensus       112 ~~~~~~~~~y~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~rYllk~~~~~~~~E~pq~~~~rVA~~la~~e~~~~r~~~a  191 (753)
T PHA02572        112 KYDPEILSKYSAEEITYLESFIDHDRDFEFTYAGAMQLKEKYLVQDRSTGEIYETPQFAYMLIAMALHQDEPKEDRLEHV  191 (753)
T ss_pred             chhHHHHHHcCHHHHHHHHHhhchhhccCCCHHHHHHHHHhhCCcCCCCCceecCHHHHHHHHHHHHHhhccccchHHHH
Confidence            99999986 8999999999999999999999999999999999996  57899999999999999999854     7899


Q ss_pred             HHHHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804        153 IETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR  192 (193)
Q Consensus       153 ~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~  192 (193)
                      ++||++||+++|+||||||+|  |||+++|||||||++|+
T Consensus       192 ~~fy~~ls~~~~~paTPtl~n--aGt~~~qlsSCFl~~v~  229 (753)
T PHA02572        192 IRFYNAVSTRKISLPTPIMAG--VRTPTRQFSSCVVIESG  229 (753)
T ss_pred             HHHHHHHHcCCcCCCChhhhc--CCCCCCcccceeeCCCC
Confidence            999999999999999999999  99999999999999875

>PRK06539 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=1.4e-45  Score=357.37  Aligned_cols=185  Identities=22%  Similarity=0.329  Sum_probs=168.6

Q ss_pred             hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHH--HHHHHHHhhh---hccC
Q psy15804          2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSE--VIEELYNMVN---KETG   76 (193)
Q Consensus         2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~--~~~~~~~~~~---~~~~   76 (193)
                      +|+.++..+++|||||+||+++++++|+++ +++||||+++| |||++.+|||++.++|.+  .++.++...+   .+.+
T Consensus        40 ~~~~~~~~~~~~~~tt~el~~~~~~~a~~~-~~~~pdy~~~A-arl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (822)
T PRK06539         40 QLASELEITLFDGITTQQLDEAVIQVALQN-VKDDPAFDTVA-ARLLLKKIYKRVLGDYDSPEELQDLHANHFRRTIEKG  117 (822)
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHHHHHh-hhhCccHHHHH-HHHHHHHHHHHHhccccchhHHHHHhHHHHHHHHHhh
Confidence            578899999999999999999999999999 67999999999 999999999999988864  3455544332   2568


Q ss_pred             ccCCCCChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhh---ccHHHH
Q psy15804         77 TRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHG---EDIDAA  152 (193)
Q Consensus        77 ~~~~~l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~---~~~~~~  152 (193)
                      +..|++++++++  .+|+++|+++|||+||+.|+|+|+++|+++||+|+ +|+++|+||+||||||+++|.   ++++++
T Consensus       118 ~~~~~~~~~~~~--~~~~~~l~~~i~~~rD~~~~y~g~~~l~~rYllk~~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a  195 (822)
T PRK06539        118 VAEGLLDSRLGG--LFDLERLAAALDPTRDELLKYIGVVTLNNRYGIRARNGDALEVPQYFWMRIAMGLSLNEDDPTSSA  195 (822)
T ss_pred             ccccccCHHHhC--HhHHHHHHhhhChhhhcCCCHHHHHHHHhhccccCCCCCEeecHHHHHHHHHHHHHhhcCCcHHHH
Confidence            899999999887  37999999999999999999999999999999997 789999999999999999996   357899


Q ss_pred             HHHHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804        153 IETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR  192 (193)
Q Consensus       153 ~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~  192 (193)
                      ++||++||+++|+||||||+|  |||+++|||||||++|+
T Consensus       196 ~~fY~~ls~~~f~~atPtL~N--aGt~~~qlsSCFl~~v~  233 (822)
T PRK06539        196 LAFYEKMSKLEYLAAGSTLVN--AGTPYPQLSNCFVMEMQ  233 (822)
T ss_pred             HHHHHHHHcCCeecCChhhhc--CCCCCCCCceeeeccCC
Confidence            999999999999999999999  99999999999999875

>PRK07088 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=1.6e-44  Score=347.82  Aligned_cols=186  Identities=24%  Similarity=0.274  Sum_probs=166.8

Q ss_pred             hhhHHHHhccCCCCCHHHHHHHHHHHHhhc------------CCCCCCCchhchHHHHhchHHHHHHhhhH--HH-HHHH
Q psy15804          2 EITLKVIKGLYPGVTTVQLDNLAAETAAFY------------EPLKHPDYAVLWLPELLCPNLHKETKKTW--SE-VIEE   66 (193)
Q Consensus         2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~------------~~~~~pdy~~lA~aRl~~~~l~k~~~~~f--~~-~~~~   66 (193)
                      ++..++..+++|||||+||++++|++|+++            +++.||||+++| ||+++.+|||++.+.|  .. .+..
T Consensus        38 ~~~~~~~~~~~~~~t~~e~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~A-arl~~~~l~k~~~~~~~~~~~~~~~  116 (764)
T PRK07088         38 ELELDSRIQFRDGMTTKEIQKSLIQTAIEKVIQNSKDNNGNNTKKTNPNWQYVA-ARLYVFDLYKEARINRHYNSFGYGD  116 (764)
T ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHHHhccccccccccccCCccCccHHHHH-HHHHHHHHHHHHHhcccccccchhh
Confidence            467788999999999999999999999999            799999999999 9999999999997643  11 1344


Q ss_pred             HHHhhhhccCccCCCCChHHHH-HHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHh
Q psy15804         67 LYNMVNKETGTRTPMISDKHYE-IIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGI  144 (193)
Q Consensus        67 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~  144 (193)
                      ++..+  +.++..|++++++++ |+.+|+++|+++|+++||+.|+|+|+++|++|||+|+ +|.++|+||+||||||+++
T Consensus       117 ~~~~~--~~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~rYllk~~~~~~~E~pq~~~~rVA~~l  194 (764)
T PRK07088        117 YYELV--KKLVEEKLYGEYLLQNYSKEEIKELEKYIKPERDFLFNYEGLKLLADRYLVKGFNREILELPQERFMGIAMHL  194 (764)
T ss_pred             HHHHH--HHHHhcchhhHHHHHhcCHHHHHHHHHHhhhccccCCCHHHHHHHHHhhCccCCCCCEeeCHHHHHHHHHHHH
Confidence            44332  346778999999886 8999999999999999999999999999999999997 8899999999999999999


Q ss_pred             hhc-----cHHHHHHHHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804        145 HGE-----DIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR  192 (193)
Q Consensus       145 ~~~-----~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~  192 (193)
                      |..     +.++|++||++||+++|+||||||+|  |||+++|||||||++|+
T Consensus       195 a~~e~~~~~~~~a~~fy~~ls~~~~~paTPtl~N--aGt~~~qlsSCFl~~v~  245 (764)
T PRK07088        195 AIPEGKEKRVYYAKKFYDLLSELKATVATPTLSN--AGTPFYQLSSCFISVVD  245 (764)
T ss_pred             hhhcccccHHHHHHHHHHHHHcCCeecCCcchhc--CCCCCCCccceeecCcc
Confidence            963     47899999999999999999999999  99999999999999875

>PRK12364 ribonucleotide-diphosphate reductase subunit alpha; Provisional

Probab=100.00  E-value=2.9e-44  Score=349.54  Aligned_cols=186  Identities=18%  Similarity=0.216  Sum_probs=164.6

Q ss_pred             hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHH-HHHHHHHhhhhccCccCC
Q psy15804          2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSE-VIEELYNMVNKETGTRTP   80 (193)
Q Consensus         2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~-~~~~~~~~~~~~~~~~~~   80 (193)
                      +++.++..+++|||||+||++++|++|+++++..||||+++| |||++.+|||++...+.+ .+..++..+  +.+++.|
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~~~~~A-arl~~~~l~k~~~~~~~~~~~~~~~~~~--~~~~~~~  206 (842)
T PRK12364        130 LLAEKFLSFCKPNMSEGESLAALIKAAVELTTQEAPDWEFIA-ARLLMLQFSKKLGKSLEKLGIHSFYDKI--KYLTEEG  206 (842)
T ss_pred             HHHHHHHHhccCCCcHHHHHHHHHHHHHHhccccCCcHHHHH-HHHHHHHHHHHHhhhccccchHHHHHHH--HHHHhcC
Confidence            578999999999999999999999999999777789999999 999999999998643222 122222221  3366778


Q ss_pred             CCChHHHH-HHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhh----ccHHHHHH
Q psy15804         81 MISDKHYE-IIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHG----EDIDAAIE  154 (193)
Q Consensus        81 ~l~~~~~~-~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~----~~~~~~~~  154 (193)
                      ++++++++ |+.+|+++|+++|+++||+.|+|+|+++|+++||+|+ +|+++|+||+||||||+++|.    ++++++++
T Consensus       207 ~~~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~rYllk~~~~~~~E~pq~~~~rvA~~la~~e~~~~~~~~~~  286 (842)
T PRK12364        207 LYGSYILEHYSREEIEEAAGFIDPERDKLFTYSGLDLLLKRYVIRTHSHEPLESPQEMFLGIALHLAMPEKQDRMGWVKR  286 (842)
T ss_pred             chhHHHHHHhcHHHHHHHHHHhccccccCCCHHHHHHHHHhhCCcCCCCCeeeCHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            99999885 8999999999999999999999999999999999997 688999999999999999996    45789999


Q ss_pred             HHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804        155 TYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR  192 (193)
Q Consensus       155 ~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~  192 (193)
                      ||++||+++|+||||||+|  |||+++|||||||++|+
T Consensus       287 fy~~ls~~~~~~aTPtl~N--agt~~~qlsSCFl~~v~  322 (842)
T PRK12364        287 FYDMLSKLKVTMATPTLSN--ARKPFHQLSSCFIDTVP  322 (842)
T ss_pred             HHHHHHcCCcccCCHHHhc--CCCCCCCeeeeEeCCCC
Confidence            9999999999999999999  99999999999998875

>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=3.4e-44  Score=345.32  Aligned_cols=184  Identities=22%  Similarity=0.307  Sum_probs=166.2

Q ss_pred             hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCCC
Q psy15804          2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPM   81 (193)
Q Consensus         2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~   81 (193)
                      +|+.++.++++|||||+||++++|++|+++|+..||||+++| |||++.+|||++.++|.+  ..+++.+  +..++.|+
T Consensus        37 ~l~~~~~~~~~~~~t~~e~~~~~~~~a~~~~~~~~pdy~~~A-arl~~~~l~k~~~~~~~~--~~~~~~~--~~l~~~~~  111 (758)
T PRK09103         37 QVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLA-ARLAIFHLRKKAYGQFEP--PALYDHV--VKMVEMGK  111 (758)
T ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHHHHhCcccCCcHHHHH-HHHHHHHHHHHHHccccc--hhHHHHH--HHHHHcCc
Confidence            578899999999999999999999999999777999999999 999999999999988754  1222221  22455689


Q ss_pred             CChHHHH-HHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc--CCeecCCHHHHHHHHHHHhhhc-----cHHHHH
Q psy15804         82 ISDKHYE-IIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGIHGE-----DIDAAI  153 (193)
Q Consensus        82 l~~~~~~-~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~--~g~~~E~pq~~~mrVA~~~~~~-----~~~~~~  153 (193)
                      +++++++ |+.+|+++|+++|+++||+.|+|+|+++|++|||+|+  +|+++|+||+||||||+++|.+     ++++++
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~i~~~rd~~f~y~~~~~l~~rYllk~~~~~~~~E~pq~~~~rVA~~la~~e~~~~~~~~~~  191 (758)
T PRK09103        112 YDKHLLEDYTEEEFDQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPKETRLDYVK  191 (758)
T ss_pred             hhHHHHHHcCHHHHHHHHHHhchhhccCCCHHHHHHHhhceeccccCCCCcccCHHHHHHHHHHHHhhccCccchHHHHH
Confidence            9999997 9999999999999999999999999999999999985  7889999999999999999964     478999


Q ss_pred             HHHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804        154 ETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR  192 (193)
Q Consensus       154 ~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~  192 (193)
                      +||++||+++|+||||+|+|  ||++++|||||||++|+
T Consensus       192 ~fy~~ls~~~~~~~Tp~l~n--aGt~~~qlsSCFl~~v~  228 (758)
T PRK09103        192 RFYDAVSTFKISLPTPIMSG--VRTPTRQFSSCVLIECG  228 (758)
T ss_pred             HHHHHHHhCCcCCCCchhcC--CCCCCCCeeEEEecCCC
Confidence            99999999999999999999  99999999999999875

>PRK09209 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=1.2e-43  Score=341.75  Aligned_cols=186  Identities=19%  Similarity=0.215  Sum_probs=163.6

Q ss_pred             hhhHHHHhccCC--CCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHH-H---HHHHHHHhhhhcc
Q psy15804          2 EITLKVIKGLYP--GVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS-E---VIEELYNMVNKET   75 (193)
Q Consensus         2 ~i~~~~~~~l~d--~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~-~---~~~~~~~~~~~~~   75 (193)
                      .++.++..++++  ||||+||+++++++|++++++.||||+++| ||+++.+|||++.+.+. .   .+..++..+  +.
T Consensus        45 ~~~~~~~~~~~~~~~~t~~e~~~~~~~~a~~~~~~~~p~y~~~A-arl~~~~l~k~~~~~~~~~~~~~~~~~~~~~--~~  121 (761)
T PRK09209         45 DYKRRVFNFVERKESVTADDLVDYLIREAEARVDLEEPEWTFFA-ARLYLNRLYKRASRNRFYDASEKYGSFVGLQ--ES  121 (761)
T ss_pred             HHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccccCccHHHHH-HHHHHHHHHHHHHhcccccchhhhhhHHHHH--HH
Confidence            467788999965  999999999999999988789999999999 99999999999976421 0   111222111  34


Q ss_pred             CccCCCCChHHHH-HHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhhcc-----
Q psy15804         76 GTRTPMISDKHYE-IIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGED-----  148 (193)
Q Consensus        76 ~~~~~~l~~~~~~-~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~~~-----  148 (193)
                      ++..|++++++++ |+.+|+++|+++|+++||+.|+|+|+++|+++||+|+ +|+++|+||+||||||+++|.++     
T Consensus       122 ~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~rYllk~~~~~~~E~pq~~~mrVA~~la~~e~~~~r  201 (761)
T PRK09209        122 LAERGIYSNDLLKRYSKEELIEAGKMIDPERDKLFTYIGLYLLADRYLATDSDRNVYELPQERWLTIALYLMQNEPRERR  201 (761)
T ss_pred             HHhcCcccHHHHHhcCHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhCCcCCCCCEEECHHHHHHHHHHHHHhhcccccH
Confidence            6677999999886 8999999999999999999999999999999999997 68999999999999999999764     


Q ss_pred             HHHHHHHHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804        149 IDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR  192 (193)
Q Consensus       149 ~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~  192 (193)
                      ++++++||++||+++|+||||||+|  |||+++|||||||++|+
T Consensus       202 ~~~~~~fY~~Ls~~~~~~aTPtl~N--aGt~~~qlsSCFl~~v~  243 (761)
T PRK09209        202 MQLVKEAYWALSNLYMTVATPTLAN--AGKVGGQLSSCFIDTVD  243 (761)
T ss_pred             HHHHHHHHHHHHcCcccCCCHHHhc--CCCCCCCeeeeEeCCcc
Confidence            7899999999999999999999999  99999999999998875

>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=2.8e-43  Score=345.94  Aligned_cols=183  Identities=27%  Similarity=0.399  Sum_probs=161.8

Q ss_pred             hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhh--------HHHHHHHHHHhh--
Q psy15804          2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKT--------WSEVIEELYNMV--   71 (193)
Q Consensus         2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~--------f~~~~~~~~~~~--   71 (193)
                      +++.++.++++||||++|++++++++|+++ ++.||||+++| |||++.+|||++.+.        +.+. ...|...  
T Consensus       184 ~Lv~kt~r~LydGIttkEL~~aLI~~a~~~-~~~~p~y~~~A-arl~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  260 (965)
T PRK07207        184 PILAETLKNLYDGVPMDEVYKALILAARTL-IEKEPNYSYVT-ARLLLDTLRREALGFLGVPEEVTQAEM-ATRYAEYFP  260 (965)
T ss_pred             HHHHHHHhhhcCCCCHHHHHHHHHHHHHHh-cccCCCHHHHH-HHHHHHHHHHHHHhhccccccchhhHH-HHHHHHHHH
Confidence            578899999999999999999999999999 78899999999 999999999998652        1111 1222221  


Q ss_pred             -hhccCccCCCCChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhcccccCCeecCCHHHHHHHHHHHhhhcc--
Q psy15804         72 -NKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGED--  148 (193)
Q Consensus        72 -~~~~~~~~~~l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~~g~~~E~pq~~~mrVA~~~~~~~--  148 (193)
                       +.+.|+..|+|++++.+   .++++|+++|+++||+.|+|+|+++|++|||+|.+|.++|+||+||||||+++|..+  
T Consensus       261 ~~~~~~~~~~~~~~~~~~---~~~~~l~~~i~~~rd~~f~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~  337 (965)
T PRK07207        261 AFIKKGIEAELLDPKLAQ---FDLERLGAALDPERDLQFTYLGLQTLYDRYFLHVDGTRIELPQAFFMRVAMGLALNEID  337 (965)
T ss_pred             HHHHhccchhhhhHHHHH---hhHHHHHHHhhHHHhCCCCHHHHHHHHHhhcccCCCCeeecHHHHHHHHHHHHHHhccc
Confidence             12568889999998765   489999999999999999999999999999999888999999999999999999754  


Q ss_pred             -HHHHHHHHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804        149 -IDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR  192 (193)
Q Consensus       149 -~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~  192 (193)
                       .++|++||++||+++|+||||||+|  |||+++|||||||++|+
T Consensus       338 ~~~~a~~fy~~ls~~~~~~aTPtl~N--aGt~~~qlsSCfl~~v~  380 (965)
T PRK07207        338 REARAIEFYNLLSSFDFMSSTPTLFN--SGTLRPQLSSCYLTTVP  380 (965)
T ss_pred             cHHHHHHHHHHHHcCCeecCCHHHhc--CCCCCCCeeeeEeCCCc
Confidence             5899999999999999999999999  99999999999999875

>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional

Probab=100.00  E-value=9e-43  Score=344.87  Aligned_cols=182  Identities=26%  Similarity=0.344  Sum_probs=156.6

Q ss_pred             hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhh------hHHHHHHHHHHhhhhcc
Q psy15804          2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKK------TWSEVIEELYNMVNKET   75 (193)
Q Consensus         2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~------~f~~~~~~~~~~~~~~~   75 (193)
                      .++.++..+++|||||+||++++|++|+++ ++.||||+++| |||++.+|||++.+      .|...+..++.... ..
T Consensus       272 ~~~~~~~~~~~~~~~~~e~~~~~~~~a~~~-~~~~p~y~~~A-arl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  348 (1046)
T PRK12365        272 LLADMAFANFYSGIKESEVVLACIMAARAN-IEKEPDYAFVA-AELLLDVVYKEALGKSKYDEDLEEAHKDHFKRYI-LE  348 (1046)
T ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHHHh-CccCCCHHHHH-HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH-hc
Confidence            467889999999999999999999999999 88899999999 99999999999975      33444444443221 12


Q ss_pred             CccCCCCChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhcccccCCeecCCHHHHHHHHHHHhhhc----cHHH
Q psy15804         76 GTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGE----DIDA  151 (193)
Q Consensus        76 ~~~~~~l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~~g~~~E~pq~~~mrVA~~~~~~----~~~~  151 (193)
                      |. .+.+.++   +...|+++|+++|+++||+.|+|+|+++|+++||+|.+|+++|+||++|||||+++|..    +.+|
T Consensus       349 ~~-~~~~~~~---~~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~~Yl~~~~~~~~E~pq~~~mRVA~~la~~e~~~~~~~  424 (1046)
T PRK12365        349 GD-TYRLNPE---LKHYDLDALAEALDLSRDLQFSYMGVQNLYDRYFNHHEGRRLETPQIFWMRVSMGLALNEGQDKTSW  424 (1046)
T ss_pred             Cc-hhhhHHH---hhhhhHHHHHHHHhHHhhCCCCHHHHHHHHHhhCcCCCCCcccCHHHHHHHHHHHHHHhcccccHHH
Confidence            21 1333333   56679999999999999999999999999999999988999999999999999999963    4679


Q ss_pred             HHHHHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804        152 AIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR  192 (193)
Q Consensus       152 ~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~  192 (193)
                      +++||++||+++|+||||||+|  |||+++|||||||++|+
T Consensus       425 a~~fy~~ls~~~f~~atPtl~N--aGt~~~qlsSCfl~~v~  463 (1046)
T PRK12365        425 AITFYNLLSTFRYTPATPTLFN--SGMRHSQLSSCYLSTVQ  463 (1046)
T ss_pred             HHHHHHHHHcCCeecCChhhhc--CCCCCCCceeeEeCCCc
Confidence            9999999999999999999999  99999999999999875

>PRK08447 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=1.1e-42  Score=335.62  Aligned_cols=180  Identities=23%  Similarity=0.327  Sum_probs=157.2

Q ss_pred             hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhh--hHHHHHHHHHHhhhhccCccC
Q psy15804          2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKK--TWSEVIEELYNMVNKETGTRT   79 (193)
Q Consensus         2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~--~f~~~~~~~~~~~~~~~~~~~   79 (193)
                      +++.++..+++|||||+||++++|++|++++++.||||+++| ||+++.+|||++.+  .| ..+....     ..|+..
T Consensus        37 ~~~~~~~~~~~~~~t~~el~~~~i~~a~~~~~~~~pdy~~~A-aRl~~~~l~k~~~~~~~~-~~~~~~~-----~~~~~~  109 (789)
T PRK08447         37 ELEVDAKIQFRDGITTEEIQQTLIKTAVDKIDIDRPNWTFVA-ARLFLYDLYHKVSGFTGY-NHLKEYF-----EKGEKE  109 (789)
T ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHHHHhCCccCccHHHHH-HHHHHHHHHHHhhccccH-HHHHHHH-----HHHhhc
Confidence            477889999999999999999999999999679999999999 99999999999943  23 2222222     224445


Q ss_pred             CCCChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhhcc---HHHHHHH
Q psy15804         80 PMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGED---IDAAIET  155 (193)
Q Consensus        80 ~~l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~~~---~~~~~~~  155 (193)
                      |.+..+++  ...++++|+++|+++||+.|+|+|+++|++|||+|+ +|+++|+||+||||||+++|.++   .+|+++|
T Consensus       110 ~~~~~~~~--~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~rYllk~~~g~~~E~pq~~~mrVA~~la~~e~~~~~~a~~f  187 (789)
T PRK08447        110 GRILLGLK--EKYDLDDLNAYIKPERDLQFNYLGIKTLYDRYLIKDRNNNPIELPQHMFMAIAMFLAQNELDPQKWAKKF  187 (789)
T ss_pred             Cccchhhh--ccccHHHHHHHhCHHHhcCCCHHHHHHHHHhhCccCCCCCEeeCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            66776654  445899999999999999999999999999999997 78899999999999999999854   5799999


Q ss_pred             HHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804        156 YNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR  192 (193)
Q Consensus       156 Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~  192 (193)
                      |++||+++|+||||||+|  ||++++|||||||++++
T Consensus       188 y~~ls~~~~~~aTPtL~N--agt~~~qlsSCFl~~v~  222 (789)
T PRK08447        188 YDVISKFEVMLATPTLSN--ARTTRHQLSSCYIGSTP  222 (789)
T ss_pred             HHHHHcCCeecCCccccc--cCCCCCCeeeeEeCCCC
Confidence            999999999999999999  99999999999998865

>COG0209 NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]

Probab=99.96  E-value=7.6e-30  Score=243.40  Aligned_cols=178  Identities=25%  Similarity=0.363  Sum_probs=155.1

Q ss_pred             HHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCCCCCh
Q psy15804          5 LKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISD   84 (193)
Q Consensus         5 ~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~   84 (193)
                      .+...+++++++   +.+.++.++...+...+|+|.+++ +|+.+..+++++.+.+.- ...++..+  ...+.++.++.
T Consensus         3 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~   75 (651)
T COG0209           3 LRTVIGFYDGIT---IAENLILAALTVIEEDDPDVQRLA-ARLAGSDLRKEAVRQFGR-FDVLDEKV--FALVANGYYDQ   75 (651)
T ss_pred             cccccchhcchh---HHHHHhhhhhhhcCccCccHHHHH-HHHHHHHHHHHHhccccc-hhhhhhHH--HHHHhhhhhHH
Confidence            456678899998   888888888888788999999999 999999999999876542 23333322  23566788888


Q ss_pred             HHH-HHHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc-CC-eecCCHHHHHHHHHHHhhhcc-----HHHHHHHH
Q psy15804         85 KHY-EIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NG-RVVERPQHMLMRVAVGIHGED-----IDAAIETY  156 (193)
Q Consensus        85 ~~~-~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g-~~~E~pq~~~mrVA~~~~~~~-----~~~~~~~Y  156 (193)
                      .++ .+..++++.+.+.++++||..|+|+|+++|++||+++. ++ +++|+||++|||||+++|.++     ++||++||
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~rYl~~~~~~~~~~E~~~~~~~~vA~~la~~e~~~~~~~~a~~~y  155 (651)
T COG0209          76 RLLRLYSREDLDDLNKKILLERDRQFSYAAAKVLYSRYLLKDEDGSEILELPQDLFMRVALLLAQNEAPERRLEWAKEFY  155 (651)
T ss_pred             HHHHhhhhhHHHHHHHhhhhcchhhhhHHHHHHHHHhhhcccccccccccCHHHHHHHHHHHhccCCccchhhHHHHHHH
Confidence            888 58888999999999999999999999999999999997 44 489999999999999999876     56999999


Q ss_pred             HHHHhCccccCCccccccccCCCCCCccceeeecc
Q psy15804        157 NLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGV  191 (193)
Q Consensus       157 ~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~  191 (193)
                      ++||+++|+||||||+|  +|++++|||||||+++
T Consensus       156 ~~~~~~~~~patPtl~n--~~~~~~qlssCfv~~~  188 (651)
T COG0209         156 DLMSSLRFMPATPTLLN--GGTPRGQLSSCFVLPV  188 (651)
T ss_pred             HHHhcCeeecCCcceec--CCCCCCceeeeEEecc
Confidence            99999999999999999  9999999999999984

>PRK07187 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=99.96  E-value=2.5e-29  Score=241.58  Aligned_cols=145  Identities=15%  Similarity=0.108  Sum_probs=126.6

Q ss_pred             CCCchhchHHHHhchHHHH-HH--hhhHHHHHHHHHHhhhhccCccCCCCChHHHH-HHHHhHHHHHHHhcccccCCCCc
Q psy15804         36 HPDYAVLWLPELLCPNLHK-ET--KKTWSEVIEELYNMVNKETGTRTPMISDKHYE-IIMKNADRLNSAIIYDRDFNYNF  111 (193)
Q Consensus        36 ~pdy~~lA~aRl~~~~l~k-~~--~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~i~~~rD~~f~y  111 (193)
                      .-+...+| +|+++..++| ++  +++|.+.+..         .++.|++++++.+ |+.++++++.+.+++.+|..|+|
T Consensus        25 ~~~~d~~A-~~~~~~~~~~~~~~~~~~~~~~~~~---------lv~~~~y~~~~~~~y~~~~l~~~~~~~~~~~~~~~~y   94 (721)
T PRK07187         25 HFDSDKEA-VERYLEEHVEPNQKKFNSLEEKLAY---------LVNNGYYEQEILDAYSFDQIEELFHYAYQYNHRFLSF   94 (721)
T ss_pred             cccchHHH-HHHHHHHHhhhccccccCHHHHHHH---------HHHcChhhHHHHhhCCHHHHHHHHhHhhhccccccch
Confidence            45788999 9999999999 57  4455444333         3456789999875 99999999999999889888999


Q ss_pred             hhhHhhhhhccccc-CCe-ecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHhCccccCCccccccccCCC-CCCccceee
Q psy15804        112 FGFKTLERSYLMKN-NGR-VVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSR-SPRFSSFSL  188 (193)
Q Consensus       112 ~g~~~l~~~Yl~k~-~g~-~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~-~~~lsSCfl  188 (193)
                      +|+++|++||++|+ +|+ ++|+||+++|||||++|.++.+.++++|+.|++++|+||||||+|  ||++ ++|||||||
T Consensus        95 ~g~~~l~~rYllk~~~~~~~~E~pq~~~~~~Al~l~~~~~~~~~~~y~~~~~~~f~paTPtl~N--aG~~~~~qlsSCFl  172 (721)
T PRK07187         95 MGAMKFYNSYALKTFDGKQYLETFEDRAVMNALFLADGDFTKAFDLLDQILLGRFQPATPTFLN--AGKKRRGEYISCYL  172 (721)
T ss_pred             HHHHHHHHhhccccCCCCeeeeCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCcccCCccccc--CCCCCCCCcCceEe
Confidence            99999999999997 455 589999999999999999888899999999999999999999999  9998 699999999


Q ss_pred             eccC
Q psy15804        189 YGVR  192 (193)
Q Consensus       189 ~~~~  192 (193)
                      ++|+
T Consensus       173 ~~v~  176 (721)
T PRK07187        173 LRVE  176 (721)
T ss_pred             ccCC
Confidence            9875

>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=99.93  E-value=1.6e-26  Score=221.54  Aligned_cols=143  Identities=13%  Similarity=0.021  Sum_probs=111.9

Q ss_pred             CchhchHHHHhchHHHHHHhh--hHHHHHHHHHHhhhhccCccCCCCChHHHHHHHHhHHHHHHHhcccccCCCCchhhH
Q psy15804         38 DYAVLWLPELLCPNLHKETKK--TWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK  115 (193)
Q Consensus        38 dy~~lA~aRl~~~~l~k~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~  115 (193)
                      +-+.-| .+.++..+.+++..  +|.+.+..         .++.|++++++-.|..++++++.+.++..++.-|+|+|++
T Consensus        28 ~~d~~a-~~~~~~~~~~~~~~f~~~~~~~~~---------l~~~~~y~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~g~~   97 (699)
T PRK07632         28 EKDQEA-LVVYLEEIKDNTIFFDTEIERLRY---------LVDNDFYFNVFDIYSEEDLIEVTDYAYSIKFNFASYMSAS   97 (699)
T ss_pred             hhHHHH-HHHHHHHhhhccEeecCHHHHHHH---------HHhccHHHHHHHhCCHHHHHHHHhHHhhccccccchhHHH
Confidence            445667 67776666555532  23222222         3445677777633666776676666666666666899999


Q ss_pred             hhhhhcccccCC--eecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHhCccccCCccccccccCCC-CCCccceeeeccC
Q psy15804        116 TLERSYLMKNNG--RVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSR-SPRFSSFSLYGVR  192 (193)
Q Consensus       116 ~l~~~Yl~k~~g--~~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~-~~~lsSCfl~~~~  192 (193)
                      +|+++|++|+++  .++|+||+||||||+++|.+|.++|++||++||+++|+||||||+|  ||++ ++|||||||++|+
T Consensus        98 ~~~~~Y~lk~~~~~~~~E~~q~~~~~vAl~l~~~~~~~a~~~y~~ls~~~f~paTPtl~N--aG~~~~~qlsSCFl~~v~  175 (699)
T PRK07632         98 KFYKDYALKTNDKKQYLEDYEDHVAIVALYLANGDKAKAKQFISAMVEQRYQPATPTFLN--AGRARRGELVSCFLLEVD  175 (699)
T ss_pred             HHHhhhccccCCCCeEEeCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCeecCCCcccC--CCCCCCCCeeeEEeCCCC
Confidence            999999999733  4899999999999999999999999999999999999999999999  9997 6999999999875

>PRK08188 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=99.93  E-value=3.6e-26  Score=219.52  Aligned_cols=143  Identities=15%  Similarity=0.104  Sum_probs=119.4

Q ss_pred             CchhchHHHHhch-HHHHHHhh--hHHHHHHHHHHhhhhccCccCCCCChHHHH-HHHHhHHHHHHHhcccccCCCCchh
Q psy15804         38 DYAVLWLPELLCP-NLHKETKK--TWSEVIEELYNMVNKETGTRTPMISDKHYE-IIMKNADRLNSAIIYDRDFNYNFFG  113 (193)
Q Consensus        38 dy~~lA~aRl~~~-~l~k~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~i~~~rD~~f~y~g  113 (193)
                      +-+.-| .|.++. ++.+++..  +|.+.+.         ..++.|++++++.+ |+.+++++|.+.|+++||..|+|+|
T Consensus        35 ~~d~~a-~~~~~~~~~~~~~~~f~~~~~~~~---------~l~~~~~y~~~~~~~y~~~~i~~l~~~i~~~~~~~~~y~g  104 (714)
T PRK08188         35 DKDRQA-ARQYFLQHVNQNTVFFHSLQEKLD---------YLVEEGYYEEEVLDQYSRNFVKTLFDHAYAKKFRFQTFLG  104 (714)
T ss_pred             hhhHHH-HHHHHHHhccccccccccHHHHHH---------HHHHccchhHHHHHhcCHHHHHHHHHHhhhccccccCcHh
Confidence            445566 565553 35555432  2222222         24556789999875 9999999999999999999999999


Q ss_pred             hHhhhhhccccc-CCe-ecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHhCccccCCccccccccCCC-CCCccceeeec
Q psy15804        114 FKTLERSYLMKN-NGR-VVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSR-SPRFSSFSLYG  190 (193)
Q Consensus       114 ~~~l~~~Yl~k~-~g~-~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~-~~~lsSCfl~~  190 (193)
                      +.+|+++|++|+ +|+ .+|+||+++||||+++|.+|.++|++||++|++++|+||||||+|  ||++ ++|||||||++
T Consensus       105 a~~~~~~Y~lk~~~~~~~~E~~~~r~~~vA~~la~~~~~~a~~~y~~l~~~~f~paTPtl~N--aG~~~~g~lsSCFl~~  182 (714)
T PRK08188        105 AFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLAQGDETLARQLVDEIISGRFQPATPTFLN--CGKKQRGELVSCFLLR  182 (714)
T ss_pred             HHHHHHhhceecCCCCEEecCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCEecCCcceec--CCCCCCCcceeEEecC
Confidence            999999999997 665 589999999999999999998999999999999999999999999  9998 89999999998


Q ss_pred             cC
Q psy15804        191 VR  192 (193)
Q Consensus       191 ~~  192 (193)
                      |+
T Consensus       183 v~  184 (714)
T PRK08188        183 IE  184 (714)
T ss_pred             CC
Confidence            75

>PRK06406 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=99.93  E-value=1.7e-25  Score=216.38  Aligned_cols=149  Identities=20%  Similarity=0.289  Sum_probs=117.3

Q ss_pred             hhHHHHhccCC--CCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCC
Q psy15804          3 ITLKVIKGLYP--GVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTP   80 (193)
Q Consensus         3 i~~~~~~~l~d--~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~   80 (193)
                      ++.+|...+.+  .++++|||+.+.++.... ....|++..+| ..-.   +|+....                      
T Consensus        44 l~~~V~~~l~~~~~~sVeeIQDiVE~~L~~~-g~~~~~~~~vA-KaYI---~YR~~r~----------------------   96 (771)
T PRK06406         44 LTDKVVERLKKYERPTVEQIQDIVEKVLMTK-KINGKDFTDVA-KSYI---LYREKRR----------------------   96 (771)
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHhC-CCcccchHHHH-HHHH---HHHHHHH----------------------
Confidence            34445444444  489999999998888887 77889998888 2211   1111100                      


Q ss_pred             CCChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhhcc-----------
Q psy15804         81 MISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGED-----------  148 (193)
Q Consensus        81 ~l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~~~-----------  148 (193)
                                  ...+....|+++||..|+++|+++|.+|||+|+ +|+++|+||+||||||+++|..|           
T Consensus        97 ------------~~r~~k~~~~~~~~~~~~~~a~~vl~~RYl~kd~~g~~~E~p~~~f~rvA~~va~~e~~~~~~~~~~~  164 (771)
T PRK06406         97 ------------KIREEKELIGVKDDLKLTLNAIKVLEARYLLKDEDGKIIETPRQMFRRVARHIAIVEALYDDEVYDKT  164 (771)
T ss_pred             ------------hccccccccCcccccccCHHHHHHHHHHHhccCCCCCEecCHHHHHHHHHHHHcchhhcccchhcccc
Confidence                        000122446778899999999999999999998 88999999999999999998643           


Q ss_pred             ----------------------------------------------------HHHHHHHHHHHHhCccccCCcccccccc
Q psy15804        149 ----------------------------------------------------IDAAIETYNLLSEKYFTHAADVMLRTHA  176 (193)
Q Consensus       149 ----------------------------------------------------~~~~~~~Y~~ls~~~~~~aTPtL~N~~a  176 (193)
                                                                          .+|+++||++|++++|+||||||+|  |
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fy~~ms~~~f~pasP~l~N--a  242 (771)
T PRK06406        165 GKQKENAEVIGKLSVTQEDMLKRAFRYLKEEGIMKGDFEEFLDFLKTKWDSIEEYINKFEEVMSNLKFVPNSPTLMN--A  242 (771)
T ss_pred             cccccccccccchhhhhhhhhhhhhhhhhhhccccccchhhhhhhccchhhHHHHHHHHHHHHHcCCEecCCHHHhc--C
Confidence                                                                3478999999999999999999999  9


Q ss_pred             CCCCCCccceeeeccC
Q psy15804        177 MSRSPRFSSFSLYGVR  192 (193)
Q Consensus       177 Gt~~~~lsSCfl~~~~  192 (193)
                      |++++|||||||++|+
T Consensus       243 G~~~~qlssCFvl~v~  258 (771)
T PRK06406        243 GTKLGQLSACFVLPVP  258 (771)
T ss_pred             CCCCCCeeeEEeCCCC
Confidence            9999999999999875

>PRK07306 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=99.92  E-value=2.1e-25  Score=214.60  Aligned_cols=142  Identities=15%  Similarity=0.140  Sum_probs=117.6

Q ss_pred             CchhchHHHHhchH-HHHHHhh--hHHHHHHHHHHhhhhccCccCCCCChHHHH-HHHHhHHHHHHHhcccccCCC-Cch
Q psy15804         38 DYAVLWLPELLCPN-LHKETKK--TWSEVIEELYNMVNKETGTRTPMISDKHYE-IIMKNADRLNSAIIYDRDFNY-NFF  112 (193)
Q Consensus        38 dy~~lA~aRl~~~~-l~k~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~i~~~rD~~f-~y~  112 (193)
                      +...-| .+.++.. +.+++..  +|.+.+.         ..++.|++++++.+ |+.+++++|.+.|++ +|+.| +|+
T Consensus        29 ~~d~~a-~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~y~~~~~~~y~~~~i~~l~~~i~~-~~~~f~~~~   97 (720)
T PRK07306         29 HKDKEA-LDAFFKENVEPNTMQFDSIKEKIN---------YLIENDYIESAFIKKYRPEFIEKLYQFLKA-QNFRFKSFM   97 (720)
T ss_pred             hhhHHH-HHHHHHHhccccccccCCHHHHHH---------HHHhcChhHHHHHhhCCHHHHHHHHHHHhh-ccCcCcCHH
Confidence            345567 6666533 5555432  2322222         24556789999875 999999999999997 89898 999


Q ss_pred             hhHhhhhhccccc-CCee-cCCHHHHHHHHHHHhhhccHHHHHHHHHHHHhCccccCCccccccccCCC-CCCccceeee
Q psy15804        113 GFKTLERSYLMKN-NGRV-VERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSR-SPRFSSFSLY  189 (193)
Q Consensus       113 g~~~l~~~Yl~k~-~g~~-~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~-~~~lsSCfl~  189 (193)
                      |+.+|+++|++|+ +|+. +|+||+++|++|++++.++.+++++||++||+++|+||||||+|  ||++ ++|||||||+
T Consensus        98 ga~~~~~rY~lk~~~g~~~~E~~~~Rv~~~A~~la~~~~~~a~~~y~~ls~~~f~paTPtl~N--aG~~~~~~lsSCFl~  175 (720)
T PRK07306         98 AAYKFYNQYALKTNDGEYYLENFEDRVLFNALYFADGDEDLAKDLADEMIHQRYQPATPSFLN--AGRARRGELVSCFLI  175 (720)
T ss_pred             HHHHHHHHhCccCCCCCEeccCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCeecCCCCeec--CCCCCCCCeeeEEeC
Confidence            9999999999997 6665 89999999999999999889999999999999999999999999  9997 5999999999


Q ss_pred             ccC
Q psy15804        190 GVR  192 (193)
Q Consensus       190 ~~~  192 (193)
                      +|+
T Consensus       176 ~v~  178 (720)
T PRK07306        176 QVT  178 (720)
T ss_pred             CCC
Confidence            874

>PF00317 Ribonuc_red_lgN: Ribonucleotide reductase, all-alpha domain; InterPro: IPR013509 Ribonucleotide reductase (1

Probab=99.91  E-value=4.2e-25  Score=160.01  Aligned_cols=72  Identities=33%  Similarity=0.534  Sum_probs=63.6

Q ss_pred             CCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhh---------ccHHHHHHHHHHHHhCccccCCccccccccC
Q psy15804        108 NYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHG---------EDIDAAIETYNLLSEKYFTHAADVMLRTHAM  177 (193)
Q Consensus       108 ~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~---------~~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aG  177 (193)
                      .|+|+|+++|+++|++|+ +|+++|+||++|||||+++|.         .+.+++.+||++||+++|+||||||+|  ||
T Consensus         2 ~~~~~a~~~l~~rYl~k~~~g~~~Etpq~~~~RVA~~la~~e~~y~~~~~~~~~~~~fy~~l~~~~f~patP~l~n--aG   79 (83)
T PF00317_consen    2 LLSYNAAKVLYDRYLLKDEDGKVIETPQEMFMRVAMALASAEPKYDDAEDRMEWAEEFYDLLSNQKFIPATPTLSN--AG   79 (83)
T ss_dssp             GSSHHHHHHHHHHTS-BETTSCB--SHHHHHHHHHHHHHTCCGG-THCCTHHHHHHHHHHHHHTTSEEE-HHHHHH--TT
T ss_pred             CCCHHHHHHHHHhhCccCCCcCEeeCHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHcCCeecCCHHHhc--CC
Confidence            689999999999999998 689999999999999999997         458899999999999999999999999  99


Q ss_pred             CCCC
Q psy15804        178 SRSP  181 (193)
Q Consensus       178 t~~~  181 (193)
                      |++|
T Consensus        80 t~~g   83 (83)
T PF00317_consen   80 TKRG   83 (83)
T ss_dssp             SSS-
T ss_pred             CCCC
Confidence            9975

17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0005524 ATP binding, 0006260 DNA replication, 0055114 oxidation-reduction process; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A ....

>PRK09102 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=99.87  E-value=4.7e-23  Score=195.24  Aligned_cols=89  Identities=26%  Similarity=0.253  Sum_probs=84.4

Q ss_pred             HHHHhcccccCCCCchhhHhhhhhcccccCCeecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHhCccccCCcccccccc
Q psy15804         97 LNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHA  176 (193)
Q Consensus        97 l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~~g~~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~~~~~~aTPtL~N~~a  176 (193)
                      .+..||++||..|+++|.++|.+||++|+     |+||++|||||+++|..+.+++++||++||+++|+||||||+|  +
T Consensus         9 ~~~~i~~~rd~~~~~~~~~~l~~rYl~~~-----Es~~~~~~RvA~~la~~~~~~~~~fy~~Ls~~~~~patP~l~n--a   81 (601)
T PRK09102          9 FQINIDRSRDAWLTEFGKATLRDRYLLEG-----ESYQDLFARIAEAYADIDPEHAQRFYDYMSRGWFMPATPVLSN--G   81 (601)
T ss_pred             ccceecchhhcccCHHHHHHHHHhhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCEEcCCHHHhc--C
Confidence            45679999999999999999999999996     9999999999999998778999999999999999999999999  9


Q ss_pred             CCCCCCccceeeeccC
Q psy15804        177 MSRSPRFSSFSLYGVR  192 (193)
Q Consensus       177 Gt~~~~lsSCfl~~~~  192 (193)
                      |++++|+|||||++++
T Consensus        82 G~~~~~lssCfl~~v~   97 (601)
T PRK09102         82 GTDRGLPISCFLNYVE   97 (601)
T ss_pred             CCCCCCeeeEEeCCCC
Confidence            9999999999998875

>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=99.83  E-value=6.6e-21  Score=184.50  Aligned_cols=88  Identities=24%  Similarity=0.317  Sum_probs=81.3

Q ss_pred             ccccCCCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhhcc---------HHHHHHHHHHHHhCccccCCcccc
Q psy15804        103 YDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGED---------IDAAIETYNLLSEKYFTHAADVML  172 (193)
Q Consensus       103 ~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~~~---------~~~~~~~Y~~ls~~~~~~aTPtL~  172 (193)
                      ..+|..|+++|.++|.++|++|+ +|+++|+||++|||||+++|..+         .+++++||++|++++|+||||||+
T Consensus         6 ~~~~~~~~~~a~~vl~~rYl~k~~~g~~~Es~~~~~~RVA~~la~~e~~~~~~~~~~~~~~~fy~~m~~~~f~pasP~l~   85 (752)
T PRK08665          6 DLPDMKLTDNALTVLEKRYLKKDEDGKPIETPEDMFRRVARTIAAAELIYDSKADVEALADRFYDLMTSLEFLPNSPTLM   85 (752)
T ss_pred             ccccCCcCHHHHHHHHHhhCccCCCCCcccCHHHHHHHHHHHHHhhccccCChhhHHHHHHHHHHHHHcCCeecCChHHh
Confidence            45788999999999999999997 78899999999999999999743         368999999999999999999999


Q ss_pred             ccccCCCCCCccceeeeccC
Q psy15804        173 RTHAMSRSPRFSSFSLYGVR  192 (193)
Q Consensus       173 N~~aGt~~~~lsSCfl~~~~  192 (193)
                      |  ||++++|||||||++|+
T Consensus        86 n--aG~~~~qlssCFv~~v~  103 (752)
T PRK08665         86 N--AGRELGQLSACFVLPVG  103 (752)
T ss_pred             c--CCCCCCcccceeecCCC
Confidence            9  99999999999999875

>TIGR02506 NrdE_NrdA ribonucleoside-diphosphate reductase, alpha subunit

Probab=99.81  E-value=2.1e-20  Score=177.79  Aligned_cols=79  Identities=34%  Similarity=0.535  Sum_probs=73.5

Q ss_pred             chhhHhhhhhccccc--CCeecCCHHHHHHHHHHHhhhc-----cHHHHHHHHHHHHhCccccCCccccccccCCCCCCc
Q psy15804        111 FFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGIHGE-----DIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRF  183 (193)
Q Consensus       111 y~g~~~l~~~Yl~k~--~g~~~E~pq~~~mrVA~~~~~~-----~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~l  183 (193)
                      |+|+++|+++|++|+  +|+++|+||++|||||++++..     +.+|+++||++|++++|+||||||+|  |||+++||
T Consensus         1 ~~g~~~l~~~Y~lk~~~~~~~~E~p~~~~~rvA~~~a~~e~~~~~~~~~~~fy~~l~~~~~~patp~l~n--aGt~~~~l   78 (617)
T TIGR02506         1 YMGLKELYNRYLLRNAATGAIYESPQEAYMRVAMGLASLEPKDTRLADAIRFYDLLSRLKISPATPTLFN--AGTPRGQL   78 (617)
T ss_pred             CchHHHHHHhhceecCCCCCcccCHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHcCCeecCChhhhc--CCCCCCCC
Confidence            789999999999996  4578999999999999999864     46799999999999999999999999  99999999


Q ss_pred             cceeeecc
Q psy15804        184 SSFSLYGV  191 (193)
Q Consensus       184 sSCfl~~~  191 (193)
                      |||||+++
T Consensus        79 ssCfv~~~   86 (617)
T TIGR02506        79 SSCFLLDV   86 (617)
T ss_pred             cceEecCC
Confidence            99999987

This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage.

>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=99.80  E-value=1.6e-19  Score=184.69  Aligned_cols=83  Identities=19%  Similarity=0.343  Sum_probs=74.4

Q ss_pred             CCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhhcc--------------------------------------
Q psy15804        108 NYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGED--------------------------------------  148 (193)
Q Consensus       108 ~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~~~--------------------------------------  148 (193)
                      .|+-+++++|..|||+|+ +|+++|+|.+||.|||..++..|                                      
T Consensus       114 ~~~~na~~vl~~ryl~~~~~g~i~e~p~~~f~rva~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (1740)
T PRK08332        114 RFSINALRVLASRYLKKDENGNIIESPRELFERVAILAVIPDLLYDERVFDKNGNYSQDLKRVEYYLENFEEFDGKYSIG  193 (1740)
T ss_pred             ccCHHHHHHHHhhhhccCCCCCcccCHHHHHHHHHHHhcchhhhccchhcccccccccchhhhhhhhhhhhhhhhccccc
Confidence            399999999999999998 89999999999999999976421                                      


Q ss_pred             --------------------------------------------HHHHHHHHHHHHhCccccCCccccccccCCCCCCcc
Q psy15804        149 --------------------------------------------IDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFS  184 (193)
Q Consensus       149 --------------------------------------------~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~ls  184 (193)
                                                                  .+.+.+||++||+++|+||||||+|  |||+++|||
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ls~~~~~~~TPtl~n--agt~~~qls  271 (1740)
T PRK08332        194 KYKLNKYHFERMVNLYRELAEKGKMKVSIDEFLKMLERGEFDKYEKEIEEYFRLMTNQIFMPNTPALIN--SGRPLGMLS  271 (1740)
T ss_pred             ccchhhhhHHHHHHHHHHhhhcccccccHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCcccCCCCceec--CCCCCCCcc
Confidence                                                        0223399999999999999999999  999999999


Q ss_pred             ceeeeccC
Q psy15804        185 SFSLYGVR  192 (193)
Q Consensus       185 SCfl~~~~  192 (193)
                      ||||++|+
T Consensus       272 sCfv~~v~  279 (1740)
T PRK08332        272 ACFVVPIE  279 (1740)
T ss_pred             eEEEecCC
Confidence            99999975

>TIGR02510 NrdE-prime ribonucleoside-diphosphate reductase, alpha chain

Probab=99.79  E-value=8.9e-20  Score=172.11  Aligned_cols=83  Identities=16%  Similarity=0.079  Sum_probs=76.2

Q ss_pred             ccccCCCCchhhHhhhhhcccccCCeecCCHHHHHHHHHHHhhhc--cHHHHHHHHHHHHhCccccCCccccccccCCCC
Q psy15804        103 YDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGE--DIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS  180 (193)
Q Consensus       103 ~~rD~~f~y~g~~~l~~~Yl~k~~g~~~E~pq~~~mrVA~~~~~~--~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~  180 (193)
                      ++++.-|+|+|.++|.++|++|+     |+||++|||||+++|..  +.+|+++||++|++++|+||||||+|  ||+++
T Consensus        12 ~~~~~~~~~~~~~~l~~rYl~~~-----es~~~~~~RVA~~la~~~~~~~~~~~fy~~Ls~~~f~patP~l~N--aGt~~   84 (571)
T TIGR02510        12 GEIPEFANAHGRLMFKKGYLLKG-----ESVEEAFKEIAQRAAAHDIREEAEEKFFDLLARGKLALATPIFAN--TGLDR   84 (571)
T ss_pred             ccchhhhhHHHHHHHHHhhcCCC-----CCHHHHHHHHHHHHhccccchHHHHHHHHHHHcCCeecCChhhhc--CCCCC
Confidence            45666689999999999999995     99999999999999974  46899999999999999999999999  99999


Q ss_pred             CCccceeeeccC
Q psy15804        181 PRFSSFSLYGVR  192 (193)
Q Consensus       181 ~~lsSCfl~~~~  192 (193)
                      +|+|||||.+|+
T Consensus        85 ~~lsSCFv~~v~   96 (571)
T TIGR02510        85 GLPISCAGSYVE   96 (571)
T ss_pred             CCeeeEEeCCCC
Confidence            999999998875

This model represents a small clade of ribonucleoside-diphosphate reductase, alpha chains which are sufficiently divergent from the usual Class I RNR alpha chains (NrdE or NrdA, TIGR02506) as to warrant their own model. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain.

>PRK06948 ribonucleotide reductase-like protein; Provisional

Probab=99.71  E-value=1e-17  Score=158.88  Aligned_cols=81  Identities=17%  Similarity=0.126  Sum_probs=71.6

Q ss_pred             cccCCCCchhhHhhhhhcccccCCeecC-CHHHHHHHHHHHhhhc-----cHHHHHHHHHHHHhCccccCCccccccccC
Q psy15804        104 DRDFNYNFFGFKTLERSYLMKNNGRVVE-RPQHMLMRVAVGIHGE-----DIDAAIETYNLLSEKYFTHAADVMLRTHAM  177 (193)
Q Consensus       104 ~rD~~f~y~g~~~l~~~Yl~k~~g~~~E-~pq~~~mrVA~~~~~~-----~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aG  177 (193)
                      -++..++-++.++|.+|||+|+     | +||++|||||+++|..     +.+|+++||++||+++ +||||||+|  ||
T Consensus         7 ~~~~~~~~~~~~~l~~rYl~~~-----e~~p~~~~~RVA~~la~~e~~~~~~~~~~~fy~~ls~~~-~patp~l~N--aG   78 (595)
T PRK06948          7 IGDMDEQPICDAVFADRYALPG-----ETSRAQVFARVARALALAEPPDTRAGAARRFYRNLLNGA-IGAGRIMAN--AG   78 (595)
T ss_pred             CCCCCCCHHHHHHHHHhcCCCC-----CCCHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcCC-cccChhhhc--CC
Confidence            3567889999999999999985     5 6999999999999974     4679999999999965 799999999  99


Q ss_pred             CCC-CCccceeeeccC
Q psy15804        178 SRS-PRFSSFSLYGVR  192 (193)
Q Consensus       178 t~~-~~lsSCfl~~~~  192 (193)
                      +++ +|||||||++|+
T Consensus        79 ~~~~~~lssCfv~~v~   94 (595)
T PRK06948         79 AAPDQTMVNCFVHPIR   94 (595)
T ss_pred             CCCCCceeeeEEcccc
Confidence            998 689999998764

>TIGR02504 NrdJ_Z ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent

Probab=99.71  E-value=7.3e-18  Score=159.62  Aligned_cols=76  Identities=21%  Similarity=0.368  Sum_probs=68.1

Q ss_pred             hhhhhccccc-CCeecCCHHHHHHHHHHHhhhccH--------HHHHHHHHHHHhCccccCCccccccccCCCCCCccce
Q psy15804        116 TLERSYLMKN-NGRVVERPQHMLMRVAVGIHGEDI--------DAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSF  186 (193)
Q Consensus       116 ~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~~~~--------~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSC  186 (193)
                      +|.+||++|+ +|.++|+||++|+|||++++..+.        +++++||++|++++|+||||||+|. +|++++|||||
T Consensus         1 ~l~~rY~~k~~~g~~~E~~~~~~~RvA~~la~~~~~~~~~~~~~~~~~fy~~l~~~~~~patp~l~n~-~g~~~~~lssC   79 (586)
T TIGR02504         1 VLAARYLLKDEDGGIIESPEDLFRRVARALAAAEDKYNSPVWKQWYERFYDLMVNLGFMPNSPTLMNA-GGTRLGQLSAC   79 (586)
T ss_pred             ChhhhhceecCCCCccCCHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHcCeEEccchhhhcc-cCCCCCcceee
Confidence            3789999997 788899999999999999997654        6999999999999999999999994 46778999999


Q ss_pred             eeeccC
Q psy15804        187 SLYGVR  192 (193)
Q Consensus       187 fl~~~~  192 (193)
                      ||++|+
T Consensus        80 fv~~v~   85 (586)
T TIGR02504        80 FVLPVE   85 (586)
T ss_pred             ECCCCC
Confidence            999875

This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ.

>PRK06556 vitamin B12-dependent ribonucleotide reductase; Validated

Probab=99.45  E-value=8e-14  Score=137.71  Aligned_cols=83  Identities=13%  Similarity=0.105  Sum_probs=70.7

Q ss_pred             CCCchhhHhhhhhcccccCCeec--CCHHHHHHHHHHHhhhcc------------HHHHHHHHHHHHhCccccCCccccc
Q psy15804        108 NYNFFGFKTLERSYLMKNNGRVV--ERPQHMLMRVAVGIHGED------------IDAAIETYNLLSEKYFTHAADVMLR  173 (193)
Q Consensus       108 ~f~y~g~~~l~~~Yl~k~~g~~~--E~pq~~~mrVA~~~~~~~------------~~~~~~~Y~~ls~~~~~~aTPtL~N  173 (193)
                      .++-++..+|..||+.+..|.+.  |+|.++|.|||-+++..+            ..+..+||++|++++|+||||||+|
T Consensus        61 ~~s~~a~~vl~~rY~~~~~g~~~~e~S~~q~f~RVA~~~a~~~~~~~~~~~~~~~~~f~~ef~~~L~~~~f~pnSP~l~N  140 (953)
T PRK06556         61 FWSVNATNIVASKYFRGAVGTPERENSLKQLIDRVVKTYTDAGREHGYFATEEDAEIFEHELTWLLLHQKFSFNSPVWFN  140 (953)
T ss_pred             cccHHHHHHHHhhhhccCCCCCcccCCHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHcCcEecCChHhhc
Confidence            34778889999999888667654  699999999999998532            1266789999999999999999999


Q ss_pred             cccCCC-CCCccceeeeccC
Q psy15804        174 THAMSR-SPRFSSFSLYGVR  192 (193)
Q Consensus       174 ~~aGt~-~~~lsSCfl~~~~  192 (193)
                        +|++ ++|||||||++|+
T Consensus       141 --aG~~~~~qlssCFvl~v~  158 (953)
T PRK06556        141 --VGTESPQQVSACFILSVD  158 (953)
T ss_pred             --CCCCCCCceeeEEeCCCC
Confidence              9997 5799999999875

>PRK08115 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=99.43  E-value=1.2e-13  Score=134.96  Aligned_cols=62  Identities=18%  Similarity=0.215  Sum_probs=57.0

Q ss_pred             eecCC-HHHHHHHHHHHhhhcc------HHHHHHHHHHHHhCccccCCccccccccCCCCC-Cccceeeecc
Q psy15804        128 RVVER-PQHMLMRVAVGIHGED------IDAAIETYNLLSEKYFTHAADVMLRTHAMSRSP-RFSSFSLYGV  191 (193)
Q Consensus       128 ~~~E~-pq~~~mrVA~~~~~~~------~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~-~lsSCfl~~~  191 (193)
                      +++|. |+++|.|||+++|..+      .+|+++||++|++++|+||||||+|  ||++.+ |||||||+++
T Consensus       125 ~~~e~~~~~~~~RVA~~la~~E~~~~~~~~~~~~fY~~Ls~~~f~PatPtL~N--AGt~~~~~lssCFVl~~  194 (858)
T PRK08115        125 KPLEIFYEQIAKRNATGLAAVEKTEEKRKESFEKFYQELVNMNFVPAGRVLYG--AGSKTDVTYFNCYVMPF  194 (858)
T ss_pred             CcccCCHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHcCCeecCChHhhc--CCCCCCCceeeEEecCC
Confidence            67897 9999999999999653      6799999999999999999999999  999987 8999999885

>cd01679 RNR_I Class I ribonucleotide reductase

Probab=98.81  E-value=2.9e-09  Score=98.72  Aligned_cols=42  Identities=43%  Similarity=0.664  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhCccccCCcccccc
Q psy15804        133 PQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRT  174 (193)
Q Consensus       133 pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~~~~~~aTPtL~N~  174 (193)
                      ||++|||||+++|..+.+|+++||++||+++|+||||||+|.
T Consensus         1 pq~~~~rvA~~la~~~~~~~~~fy~~l~~~~~~patp~l~na   42 (460)
T cd01679           1 PQDRLMRVALGLASGDLEWAKEFYDLLSKQRFTPATPTLFNA   42 (460)
T ss_pred             ChHHHHHHHHHHhcCCHHHHHHHHHHHHcCCeecCCHHhhcC
Confidence            899999999999998999999999999999999999999985

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (

>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=98.45  E-value=3e-07  Score=92.98  Aligned_cols=60  Identities=13%  Similarity=0.151  Sum_probs=52.0

Q ss_pred             CC-HHHHHHHHHHHhhh--------ccHHHHHHHHH----HHHhCccccCCccccccccCC-------------------
Q psy15804        131 ER-PQHMLMRVAVGIHG--------EDIDAAIETYN----LLSEKYFTHAADVMLRTHAMS-------------------  178 (193)
Q Consensus       131 E~-pq~~~mrVA~~~~~--------~~~~~~~~~Y~----~ls~~~~~~aTPtL~N~~aGt-------------------  178 (193)
                      |+ -.++|-|+|-++..        +..+++..||+    +|.+|++.|+||++||  .|.                   
T Consensus       103 e~s~~q~~~r~~~~~~~~g~~~gyf~~~~da~~f~de~~~~l~~q~~apnSP~wfN--~Gl~~~yg~~~~~~~~~~~d~~  180 (1220)
T PRK07562        103 ETSAKQVFDRLAGCWTYWGWKGGYFDSEEDARAFYDELRYMLATQMVAPNSPQWFN--TGLHWAYGIDGPGQGHFYVDPK  180 (1220)
T ss_pred             cccHHHHHHHHHHHHHHHHhhCCccCCHHHHHHHHHHHHHHHHhcCcCCCCcceee--ccccccccccCccccccccccc
Confidence            64 58999999988763        23578999999    9999999999999999  997                   


Q ss_pred             -----------CCCCccceeeeccC
Q psy15804        179 -----------RSPRFSSFSLYGVR  192 (193)
Q Consensus       179 -----------~~~~lsSCfl~~~~  192 (193)
                                 .++|+|||||++|+
T Consensus       181 ~~~~~~~~~~y~~pQlsSCFI~~V~  205 (1220)
T PRK07562        181 TGKLTKSKSAYEHPQPHACFIQSVE  205 (1220)
T ss_pred             cccccccccccCCCCcceEEecccC
Confidence                       68999999999875

>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []

Probab=97.02  E-value=0.00089  Score=48.18  Aligned_cols=48  Identities=25%  Similarity=0.376  Sum_probs=43.0

Q ss_pred             hhhHHHHhccCC----CCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHH
Q psy15804          2 EITLKVIKGLYP----GVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKE   55 (193)
Q Consensus         2 ~i~~~~~~~l~d----~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~   55 (193)
                      +|+.+|...|++    +|||+||++++.+++.     .+|.|..++ +++...++||+
T Consensus        39 ~i~~~V~~~l~~~~~~~is~~eI~~~v~~~L~-----~~~~~~~a~-~yi~yr~~r~e   90 (90)
T PF03477_consen   39 EIASEVENKLYDSGKEEISTEEIQDIVENALM-----EEGFYDVAR-AYILYRNIRKE   90 (90)
T ss_dssp             HHHHHHHTC-ST----TEEHHHHHHHHHHHHH-----TSTTHHHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccCCCeeHHHHHHHHHHHHH-----cCChHHHHH-HHHHHHHHHcC
Confidence            578999999999    9999999999999988     668999999 99999998875

In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
3s8a_A	888	Structure Of Yeast Ribonucleotide Reductase R293a W		7e-59
3tb9_A	888	Structure Of Yeast Ribonucleotide Reductase 1 Q288a		7e-59
1zyz_A	888	Structures Of Yeast Ribonucloetide Reductase I Leng		8e-59
3hnc_A	792	Crystal Structure Of Human Ribonucleotide Reductase		1e-58
2wgh_A	676	Human Ribonucleotide Reductase R1 Subunit (Rrm1) In		2e-48

>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With Dgtp Length = 888

Iteration: 1
 Score =  223 bits (567), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 145/192 (75%), Gaps = 4/192 (2%)
Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V++T ++I G+Y GVTT++LDNLAAET A+   + HPDYA L    +   NLHK+T K +
Sbjct: 37  VKVTQRIISGVYEGVTTIELDNLAAETCAYMTTV-HPDYATL-AARIAISNLHKQTTKQF 94
Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V+E+LY  VN  TG   PMISD  Y I+M+N D+LNSAI+YDRDF Y++FGFKTLERS
Sbjct: 95  SKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL++ NG+V ERPQH++MRVA+GIHG DI+AA+ETYNL+S KYFTHA+  +   +A +  
Sbjct: 155 YLLRINGQVAERPQHLIMRVALGIHGRDIEAALETYNLMSLKYFTHASPTLF--NAGTPK 212
Query: 181 PRFSSFSLYGVR 192
           P+ SS  L  ++
Sbjct: 213 PQMSSCFLVAMK 224

>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With Amppnp And Cdp Length = 888

Iteration: 1
 Score =  223 bits (567), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 145/192 (75%), Gaps = 4/192 (2%)
Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V++T ++I G+Y GVTT++LDNLAAET A+   + HPDYA L    +   NLHK+T K +
Sbjct: 37  VKVTQRIISGVYEGVTTIELDNLAAETCAYMTTV-HPDYATL-AARIAISNLHKQTTKQF 94
Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V+E+LY  VN  TG   PMISD  Y I+M+N D+LNSAI+YDRDF Y++FGFKTLERS
Sbjct: 95  SKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL++ NG+V ERPQH++MRVA+GIHG DI+AA+ETYNL+S KYFTHA+  +   +A +  
Sbjct: 155 YLLRINGQVAERPQHLIMRVALGIHGRDIEAALETYNLMSLKYFTHASPTLF--NAGTPK 212
Query: 181 PRFSSFSLYGVR 192
           P+ SS  L  ++
Sbjct: 213 PQMSSCFLVAMK 224

>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I Length = 888

Iteration: 1
 Score =  222 bits (566), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 145/192 (75%), Gaps = 4/192 (2%)
Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V++T ++I G+Y GVTT++LDNLAAET A+   + HPDYA L    +   NLHK+T K +
Sbjct: 37  VKVTQRIISGVYEGVTTIELDNLAAETCAYMTTV-HPDYATL-AARIAISNLHKQTTKQF 94
Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V+E+LY  VN  TG   PMISD  Y I+M+N D+LNSAI+YDRDF Y++FGFKTLERS
Sbjct: 95  SKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL++ NG+V ERPQH++MRVA+GIHG DI+AA+ETYNL+S KYFTHA+  +   +A +  
Sbjct: 155 YLLRINGQVAERPQHLIMRVALGIHGRDIEAALETYNLMSLKYFTHASPTLF--NAGTPK 212
Query: 181 PRFSSFSLYGVR 192
           P+ SS  L  ++
Sbjct: 213 PQMSSCFLVAMK 224

>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effector Ttp Length = 792

Iteration: 1
 Score =  221 bits (564), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 148/192 (77%), Gaps = 4/192 (2%)
Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
            +IT+KVI+GLY GVTTV+LD LAAETAA     KHPDYA+L    +   NLHKETKK +
Sbjct: 37  AQITMKVIQGLYSGVTTVELDTLAAETAATLT-TKHPDYAIL-AARIAVSNLHKETKKVF 94
Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFKTLERS
Sbjct: 95  SDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERS 154
Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSE++FTHA+  +   +A +  
Sbjct: 155 YLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLF--NAGTNR 212
Query: 181 PRFSSFSLYGVR 192
           P+ SS  L  ++
Sbjct: 213 PQLSSCFLLSMK 224

>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In Complex With Datp And Mg. Length = 676

Iteration: 1
 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 113/142 (79%), Gaps = 2/142 (1%)
Query: 51  NLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 110
           NLHKETKK +S+V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN
Sbjct: 12  NLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYN 71
Query: 111 FFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADV 170
           +FGFKTLERSYL+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSE++FTHA+  
Sbjct: 72  YFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPT 131
Query: 171 MLRTHAMSRSPRFSSFSLYGVR 192
           +   +A +  P+ SS  L  ++
Sbjct: 132 LF--NAGTNRPQLSSCFLLSMK 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
3k8t_A	888	Ribonucleoside-diphosphate reductase large chain;	3e-71
3hnc_A	792	Ribonucleoside-diphosphate reductase large subuni;	3e-70
2wgh_A	676	Ribonucleoside-diphosphate reductase large subunit	5e-61
2xap_A	761	Ribonucleoside-diphosphate reductase 1 subunit alp	3e-56
1peq_A	714	Ribonucleoside-diphosphate reductase 2 alpha chain	8e-36
3o0q_A	644	Ribonucleoside-diphosphate reductase; alpha/beta b	1e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A* Length = 888

 Score =  230 bits (588), Expect = 3e-71
 Identities = 108/192 (56%), Positives = 144/192 (75%), Gaps = 4/192 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
           V++T ++I G+Y GVTT++LDNLAAET A+     HPDYA L    +   NLHK+T K +
Sbjct: 37  VKVTQRIISGVYEGVTTIELDNLAAETCAYMTT-VHPDYATL-AARIAISNLHKQTTKQF 94

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V+E+LY  VN  TG   PMISD  Y I+M+N D+LNSAI+YDRDF Y++FGFKTLERS
Sbjct: 95  SKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERS 154

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL++ NG+V ERPQH++MRVA+GIHG DI+AA+ETYNL+S KYFTHA+  +   +A +  
Sbjct: 155 YLLRINGQVAERPQHLIMRVALGIHGRDIEAALETYNLMSLKYFTHASPTLF--NAGTPK 212

Query: 181 PRFSSFSLYGVR 192
           P+ SS  L  ++
Sbjct: 213 PQMSSCFLVAMK 224

>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A* Length = 792

 Score =  226 bits (578), Expect = 3e-70
 Identities = 117/192 (60%), Positives = 148/192 (77%), Gaps = 4/192 (2%)

Query: 1   VEITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTW 60
            +IT+KVI+GLY GVTTV+LD LAAETAA     KHPDYA+L    +   NLHKETKK +
Sbjct: 37  AQITMKVIQGLYSGVTTVELDTLAAETAATLTT-KHPDYAIL-AARIAVSNLHKETKKVF 94

Query: 61  SEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERS 120
           S+V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFKTLERS
Sbjct: 95  SDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERS 154

Query: 121 YLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRS 180
           YL+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSE++FTHA+  +   +A +  
Sbjct: 155 YLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLF--NAGTNR 212

Query: 181 PRFSSFSLYGVR 192
           P+ SS  L  ++
Sbjct: 213 PQLSSCFLLSMK 224

>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens} Length = 676

 Score =  200 bits (509), Expect = 5e-61
 Identities = 88/145 (60%), Positives = 113/145 (77%), Gaps = 2/145 (1%)

Query: 47  LLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 106
           +   NLHKETKK +S+V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRD
Sbjct: 8   IAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRD 67

Query: 107 FNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTH 166
           F+YN+FGFKTLERSYL+K NG+V ERPQHMLMRV+VGIH EDIDAAIETYNLLSE++FTH
Sbjct: 68  FSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTH 127

Query: 167 AADVMLRTHAMSRSPRFSSFSLYGV 191
           A+  +   +A +  P+ SS  L  +
Sbjct: 128 ASPTLF--NAGTNRPQLSSCFLLSM 150

>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B Length = 761

 Score =  188 bits (479), Expect = 3e-56
 Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 17/193 (8%)

Query: 2   EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS 61
           ++ L+     Y G+ T  +     + AA       PDY  L    L   +L K+    + 
Sbjct: 40  QVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYL-AARLAIFHLRKKAYGQFE 98

Query: 62  EVIEELYNMVNK--ETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLER 119
                LY+ V K  E G     + + + E   +   ++++ I +DRD  +++   K LE 
Sbjct: 99  --PPALYDHVVKMVEMGKYDNHLLEDYTE---EEFKQMDTFIDHDRDMTFSYAAVKQLEG 153

Query: 120 SYLMKN--NGRVVERPQHMLMRVAVGIHGE-----DIDAAIETYNLLSEKYFTHAADVML 172
            YL++N   G + E  Q + + VA  +         +      Y+ +S    +    +M 
Sbjct: 154 KYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIM- 212

Query: 173 RTHAMSRSPRFSS 185
            +   + + +FSS
Sbjct: 213 -SGVRTPTRQFSS 224

>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E* Length = 714

 Score =  131 bits (331), Expect = 8e-36
 Identities = 26/162 (16%), Positives = 47/162 (29%), Gaps = 19/162 (11%)

Query: 23  LAAETAAFYEPLKHPDYAVLWLPELLCPNL--HKETKKTWSEVIEELYNMVNKETGTRTP 80
           +A  T       +  DY  L    L   +   H +  K    +       V   + T   
Sbjct: 1   MATTTPERVMQ-ETMDYHAL-NAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFAS 58

Query: 81  -------MISDKHYEIIM------KNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNN- 126
                  ++ + +Y+  +          RL             F G      SY +K   
Sbjct: 59  QHERLGTLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFD 118

Query: 127 -GRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHA 167
             R +E  +  +  VA+ +   D   A +  + +    F  A
Sbjct: 119 GKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPA 160

>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjk_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* Length = 644

 Score = 87.4 bits (217), Expect = 1e-20
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 17/93 (18%)

Query: 96  RLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERP-QHMLMRVAVGI--------- 144
           +L+  I    D   +      L   Y MK+ +G  +E   + +  RVA  +         
Sbjct: 2   KLSDLISRWIDVEPSKNAQIILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPS 61

Query: 145 --HGEDIDAAIET----YNLLSEKYFTHAADVM 171
               E +D   E     + +L  + F   +  +
Sbjct: 62  YKKNEKLDRIKEWEDIFFRVLKARLFIPNSPTL 94

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 5e-05
 Identities = 33/214 (15%), Positives = 59/214 (27%), Gaps = 53/214 (24%)

Query: 2   EITLKVIKGLY-----PGVT---------TVQLDNLAAETAAFYEPLKHPDYAVLWL--- 44
           +  LK+ + L        V          T     +A +    Y+     D+ + WL   
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTW----VALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 45  ----PELLCP---NLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHY-EIIMKNADR 96
               PE +      L  +    W+   +   N        +  + S +     ++K+   
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-------IKLRIHSIQAELRRLLKSKPY 243

Query: 97  LNSAIIYD--------RDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGED 148
            N  ++            FN      K L    L     +V +             H   
Sbjct: 244 ENCLLVLLNVQNAKAWNAFN---LSCKIL----LTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 149 IDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPR 182
                E  +LL  KY        L    ++ +PR
Sbjct: 297 TLTPDEVKSLLL-KYLDCRPQ-DLPREVLTTNPR 328

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
3hnc_A	792	Ribonucleoside-diphosphate reductase large subuni;	100.0
3k8t_A	888	Ribonucleoside-diphosphate reductase large chain;	100.0
2xap_A	761	Ribonucleoside-diphosphate reductase 1 subunit alp	100.0
2wgh_A	676	Ribonucleoside-diphosphate reductase large subunit	100.0
1peq_A	714	Ribonucleoside-diphosphate reductase 2 alpha chain	99.96
3o0q_A	644	Ribonucleoside-diphosphate reductase; alpha/beta b	99.92
1l1l_A	739	Ribonucleoside triphosphate reductase; 10-stranded	99.74

>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A*

Probab=100.00  E-value=7.2e-52  Score=398.48  Aligned_cols=186  Identities=63%  Similarity=1.001  Sum_probs=180.8

Q ss_pred             hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCCC
Q psy15804          2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPM   81 (193)
Q Consensus         2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~   81 (193)
                      +|++++..+++|||||+||++++|++|+++ +++||||++|| |||++.+|||++.++|++.+..+|+++...+|...|+
T Consensus        38 ~i~~~~~~~~~~gitt~el~~~~~~~a~~~-~~~~pdy~~~A-aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~  115 (792)
T 3hnc_A           38 QITMKVIQGLYSGVTTVELDTLAAETAATL-TTKHPDYAILA-ARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPM  115 (792)
T ss_dssp             HHHHHHHTTCCTTCCHHHHHHHHHHHHHHG-GGTCTHHHHHH-HHHHHHHHHHTSCSCHHHHHHHHHSCBCTTTCCBCCS
T ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHHHHh-hhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            588999999999999999999999999999 78999999999 9999999999999999998999999887778999999


Q ss_pred             CChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhcccccCCeecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHh
Q psy15804         82 ISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSE  161 (193)
Q Consensus        82 l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~~g~~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~  161 (193)
                      +++++++|+++|+++|++.|+|+||+.|+|+|+++|++|||+|.+|+++|+||+||||||+++|.+|+++|++||++||+
T Consensus       116 ~~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~L~~rYllk~~g~~~E~pq~~~~rVA~~l~~~~~~~a~~~y~~ls~  195 (792)
T 3hnc_A          116 VAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSE  195 (792)
T ss_dssp             SCHHHHHHHHHTHHHHHHHCCGGGGGGSCHHHHHHHHHHTSCEETTEECCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cChHHHHHHHHHHHHHHHHhChhhhcCCChHHHHHHHhccccccCCCeeeCHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCccccccccCCCCCCccceeeecc
Q psy15804        162 KYFTHAADVMLRTHAMSRSPRFSSFSLYGV  191 (193)
Q Consensus       162 ~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~  191 (193)
                      ++|+||||||+|  |||+++|||||||++|
T Consensus       196 ~~f~~aTPtl~N--aGt~~~qlsSCFl~~v  223 (792)
T 3hnc_A          196 RWFTHASPTLFN--AGTNRPQLSSCFLLSM  223 (792)
T ss_dssp             TSEEECHHHHHH--TTSSSCCCCCEEEEEC
T ss_pred             CCcccCChhhhc--CCCCCCCCCceeccCC
Confidence            999999999999  9999999999999987

>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3rsr_A* 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*

Probab=100.00  E-value=1.6e-51  Score=398.68  Aligned_cols=186  Identities=58%  Similarity=0.960  Sum_probs=129.8

Q ss_pred             hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCCC
Q psy15804          2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPM   81 (193)
Q Consensus         2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~   81 (193)
                      +|+.++..+++|||||+||++++|++|+++ +++||||++|| |||++.+|||++.++|++.+..+|+++..++|++.|+
T Consensus        38 ~i~~~~~~~~~~gitt~el~~~~i~~a~~~-~~~~Pdy~~~A-aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~g~~~~l  115 (888)
T 3k8t_A           38 KVTQRIISGVYEGVTTIELDNLAAETCAYM-TTVHPDYATLA-ARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPM  115 (888)
T ss_dssp             ------------------------------------------------------CCCCHHHHHHHHHTCEETTTTEECCS
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHh-cccCCCHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhcccccc
Confidence            578899999999999999999999999999 78999999999 9999999999999999998899998776678999999


Q ss_pred             CChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhhhcccccCCeecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHh
Q psy15804         82 ISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSE  161 (193)
Q Consensus        82 l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~~g~~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~  161 (193)
                      +++++++++++|+++|++.|+|+||+.|+|+|+++|++|||+|++|+++|+||+||||||+++|.+|+++|++||++||+
T Consensus       116 i~~~~~~~~~~~~~~L~~~i~~~RD~~f~y~g~~~L~~rYllk~~g~~~E~pq~~~mRVA~~la~~~~~~a~~fY~~ms~  195 (888)
T 3k8t_A          116 ISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGRDIEAALETYNLMSL  195 (888)
T ss_dssp             SCHHHHHHHHHTHHHHHTTCCGGGGGGSCHHHHHHHHHHTSCEETTEECCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHHhChhcccCCChHHHHHHHhccccccCCCEeeCHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCccccccccCCCCCCccceeeecc
Q psy15804        162 KYFTHAADVMLRTHAMSRSPRFSSFSLYGV  191 (193)
Q Consensus       162 ~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~  191 (193)
                      ++|+||||||+|  |||+++|||||||+++
T Consensus       196 ~~f~paTPtL~N--AGt~~~qlsSCFll~~  223 (888)
T 3k8t_A          196 KYFTHASPTLFN--AGTPKPQMSSCFLVAM  223 (888)
T ss_dssp             TSEEECHHHHHH--TTSSSCCCCCEEEEEC
T ss_pred             CCcccCChhhhc--CCCCCCCCCceeccCC
Confidence            999999999999  9999999999999986

>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B

Probab=100.00  E-value=5.1e-44  Score=343.89  Aligned_cols=184  Identities=21%  Similarity=0.303  Sum_probs=167.5

Q ss_pred             hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCCC
Q psy15804          2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPM   81 (193)
Q Consensus         2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~   81 (193)
                      +|+.++..+++|||||+||++++|++|+.+++++||||+++| |||++.+|||++.+.|.+  ..++.++  +.+++.|+
T Consensus        40 ~~~~~~~~~~~~~~tt~ei~~~~~~~a~~~~~~~~p~~~~~A-arl~~~~l~k~~~~~~~~--~~~~~~~--~~~~~~~~  114 (761)
T 2xap_A           40 QVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLA-ARLAIFHLRKKAYGQFEP--PALYDHV--VKMVEMGK  114 (761)
T ss_dssp             HHHHHHHTTCCTTEEHHHHHHHHHHHHHHTCCSSSTTHHHHH-HHHHHHHHHHHHHSSSSC--CCHHHHH--HHHHHTTS
T ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHHHHhcCccCcCHHHHH-HHHHHHHHHHHHhcccCh--HHHHHHH--HHHHhcch
Confidence            578899999999999999999999999988799999999999 999999999999886643  2333332  23566789


Q ss_pred             CChHHHH-HHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc--CCeecCCHHHHHHHHHHHhhhcc-----HHHHH
Q psy15804         82 ISDKHYE-IIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGIHGED-----IDAAI  153 (193)
Q Consensus        82 l~~~~~~-~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~--~g~~~E~pq~~~mrVA~~~~~~~-----~~~~~  153 (193)
                      +++++.+ |+.+++++|++.|+++||+.|+|+|+++|+++|++|+  +|+++|+||+||||||+++|.++     .++++
T Consensus       115 ~~~~~~~~y~~~~~~~l~~~i~~~rd~~~~~~g~~~l~~rYllk~~~~g~~~E~pq~~~~RVA~~la~~e~~~~~~~~a~  194 (761)
T 2xap_A          115 YDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVK  194 (761)
T ss_dssp             SCTHHHHHSCHHHHHHHHHHCCGGGGGGCCHHHHHHHHHHTSCBCTTTCCBCCCHHHHHHHHHHHHTTTSCTTTHHHHHH
T ss_pred             hhHHHHhhccHHHHHHHHhhhcccccCCCCHHHHHHHHhccCCccCCCCceecCHHHHHHHHHHHHhccCccccHHHHHH
Confidence            9999885 9999999999999999999999999999999999995  68999999999999999999876     78999


Q ss_pred             HHHHHHHhCccccCCccccccccCCCCCCccceeeeccC
Q psy15804        154 ETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGVR  192 (193)
Q Consensus       154 ~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~~  192 (193)
                      +||++||+++|+||||||+|  |||+++|||||||++|+
T Consensus       195 ~fy~~ls~~~~~patPtl~n--aGt~~~qlssCFl~~v~  231 (761)
T 2xap_A          195 RFYDAVSTFKISLPTPIMSG--VRTPTRQFSSCVLIECG  231 (761)
T ss_dssp             HHHHHHHTTSEECCHHHHHH--TTSSCCCCCCEEEEECC
T ss_pred             HHHHHHHcCCcCCCchhhhc--CCCCCCCcceEEEecCC
Confidence            99999999999999999999  99999999999999875

>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.9e-38  Score=298.06  Aligned_cols=149  Identities=60%  Similarity=0.988  Sum_probs=143.2

Q ss_pred             hhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCCCCChHHHHHHHHhHHHHHHHhcccccCCCCchhhHhhhh
Q psy15804         40 AVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLER  119 (193)
Q Consensus        40 ~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~  119 (193)
                      ++|| |||++.+|||++.++|++.+..++.++.+++|.+.+++++++++++++++++|+++|+|+||+.|+|+|+++|++
T Consensus         2 ~~~a-arl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~i~~~rd~~f~~~g~~~l~~   80 (676)
T 2wgh_A            2 AILA-ARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLER   80 (676)
T ss_dssp             --CH-HHHHHHHHHHTSCSCHHHHHHHHHHCBCTTTCCBCCSSCHHHHHHHHHTHHHHHHTCCGGGGGGSCHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhcccchhhhCHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHh
Confidence            5799 999999999999999999999999988888899999999999999999999999999999999999999999999


Q ss_pred             hcccccCCeecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHhCccccCCccccccccCCCCCCccceeeecc
Q psy15804        120 SYLMKNNGRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRTHAMSRSPRFSSFSLYGV  191 (193)
Q Consensus       120 ~Yl~k~~g~~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~lsSCfl~~~  191 (193)
                      +|++|.+|+++|+||+||||||+++|.+|.+++++||++||+++|+||||||+|  |||+++|||||||++|
T Consensus        81 ~Yllk~~g~~~E~pq~~~~RVA~~la~~~~~~a~~~y~~ls~~~f~patPtl~n--aGt~~~qlssCfl~~v  150 (676)
T 2wgh_A           81 SYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLFN--AGTNRPQLSSCFLLSM  150 (676)
T ss_dssp             HTSCEETTEECCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSEEECHHHHHH--TTSSSCCCCCEEEEEC
T ss_pred             hcccccCCCccCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhCCcccCchHHhc--CCCCCCCCCCeEeecC
Confidence            999998899999999999999999999999999999999999999999999999  9999999999999988

>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*

Probab=99.96  E-value=1.3e-30  Score=249.34  Aligned_cols=156  Identities=18%  Similarity=0.139  Sum_probs=135.1

Q ss_pred             CCCCCCchhchHHHHhchH--HHHHHhhhHHHHHHHHHHhhhhcc------------CccCCCCChHHH-HHHHHhHHHH
Q psy15804         33 PLKHPDYAVLWLPELLCPN--LHKETKKTWSEVIEELYNMVNKET------------GTRTPMISDKHY-EIIMKNADRL   97 (193)
Q Consensus        33 ~~~~pdy~~lA~aRl~~~~--l~k~~~~~f~~~~~~~~~~~~~~~------------~~~~~~l~~~~~-~~~~~~~~~l   97 (193)
                      ...+|||..|| ||+.+.+  .++++.++|+.....+++++++++            +++.|+|++++. .|..++++++
T Consensus        10 ~~~~~~y~~l~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~~~~~y~~~~l~~~   88 (714)
T 1peq_A           10 MQETMDYHALN-AMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDDAVLARYDRAFVLRL   88 (714)
T ss_dssp             SCCCCCHHHHH-HGGGCCCTTSCCCTHHHHHHHHHHHHHTHHHHBCCCSCHHHHHHHHHHTTSBCHHHHTTSCHHHHHHH
T ss_pred             ccCCCCHHHHH-HHHcccccCCcccccchHHHHHHHHHHhhhhhccCCCCHHHHHHHHHhcCcccHHHHHhcCHHHHHHH
Confidence            45679999999 9999998  889998889888788888665432            556888988876 3666677776


Q ss_pred             HHHhcccccCCC-CchhhHhhhhhccccc-CCe-ecCCHHHHHHHHHHHhhhccHHHHHHHHHHHHhCccccCCcccccc
Q psy15804         98 NSAIIYDRDFNY-NFFGFKTLERSYLMKN-NGR-VVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHAADVMLRT  174 (193)
Q Consensus        98 ~~~i~~~rD~~f-~y~g~~~l~~~Yl~k~-~g~-~~E~pq~~~mrVA~~~~~~~~~~~~~~Y~~ls~~~~~~aTPtL~N~  174 (193)
                      .+.++ +||+.| +|+|+++|+++|++|+ +|+ ++|+||+|+||||++++.++.+++++||++|++++|+||||||+| 
T Consensus        89 ~~~~~-~~~~~f~~y~g~~~l~~~Y~lk~~~g~~~~E~~~~~~~rvA~~la~~~~~~a~~~y~~ls~~~f~patPtl~N-  166 (714)
T 1peq_A           89 FEHAH-ASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLN-  166 (714)
T ss_dssp             HHHHH-HSCCCCSSHHHHHHHHHHTSCBCTTSSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSEEECHHHHHH-
T ss_pred             Hhhhh-hcCCCCCchHHHHHHHHHcccccCCCCEEeCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCcccCChhhhc-
Confidence            66665 688888 8999999999999997 554 889999999999999999889999999999999999999999999 


Q ss_pred             ccCCC-CCCccceeeeccC
Q psy15804        175 HAMSR-SPRFSSFSLYGVR  192 (193)
Q Consensus       175 ~aGt~-~~~lsSCfl~~~~  192 (193)
                       ||++ ++|||||||++|+
T Consensus       167 -aGt~~~~qlssCFl~~v~  184 (714)
T 1peq_A          167 -CGKQQRGELVSCFLLRIE  184 (714)
T ss_dssp             -TTBSSCCCSCCCEEECCC
T ss_pred             -CCCCCCCCccceecCCCC
Confidence             9998 4899999999875

>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* 1xjk_A*

Probab=99.92  E-value=1e-25  Score=213.36  Aligned_cols=94  Identities=18%  Similarity=0.146  Sum_probs=88.1

Q ss_pred             HHHHhcccccCCCCchhhHhhhhhccccc-CCeecC-CHHHHHHHHHHHhhhcc---------------HHHHHHHHHHH
Q psy15804         97 LNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVE-RPQHMLMRVAVGIHGED---------------IDAAIETYNLL  159 (193)
Q Consensus        97 l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E-~pq~~~mrVA~~~~~~~---------------~~~~~~~Y~~l  159 (193)
                      +..+||++||..|+|+|+++|.+||++|+ +|+++| +||+||||||+++|..+               .+++++||++|
T Consensus         3 ~~~~~~~~~d~~~s~~a~~~l~~rYllk~~~g~~~E~spq~~~~RVA~~la~~e~~~~~~~~~~~~~~~~~~~~~fy~~l   82 (644)
T 3o0q_A            3 LSDLISRWIDVEPSKNAQIILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDIFFRVL   82 (644)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHTSCBCTTSCBSCCSHHHHHHHHHHHHHGGGGGCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcCCCCCCHHHHHHHHHhhCccCCCCCCccCCHHHHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHH
Confidence            45689999999999999999999999996 899999 99999999999999876               35899999999


Q ss_pred             HhCccccCCccccccccCC---------C------------------CCCccceeeeccC
Q psy15804        160 SEKYFTHAADVMLRTHAMS---------R------------------SPRFSSFSLYGVR  192 (193)
Q Consensus       160 s~~~~~~aTPtL~N~~aGt---------~------------------~~~lsSCfl~~~~  192 (193)
                      |+++|+||||||+|  |||         +                  ++|||||||++|+
T Consensus        83 s~~~f~patPtl~N--aGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qlssCFl~~v~  140 (644)
T 3o0q_A           83 KARLFIPNSPTLFN--AGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPVG  140 (644)
T ss_dssp             HTTSEEECHHHHHH--TTTTSCHHHHSSCGGGCCHHHHHHHHHHCCTTCCCCCEEECCCC
T ss_pred             HhCCEecCChHhhc--CCCCcccccccCChhhccccchhhhccccccCCCccceEecCCC
Confidence            99999999999999  999         8                  8999999999885

>1l1l_A Ribonucleoside triphosphate reductase; 10-stranded alpha-beta barrel, central finger loop, oxidoreductase; 1.75A {Lactobacillus leichmannii} SCOP: c.7.1.4

Probab=99.74  E-value=1.5e-18  Score=166.71  Aligned_cols=93  Identities=16%  Similarity=0.134  Sum_probs=81.5

Q ss_pred             HHHHHHHhcccccCCCCchhhHhhhhhccccc-CCeecCCHHHHHHHHHHHhhhc---------------cHHHHHHHHH
Q psy15804         94 ADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-NGRVVERPQHMLMRVAVGIHGE---------------DIDAAIETYN  157 (193)
Q Consensus        94 ~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~mrVA~~~~~~---------------~~~~~~~~Y~  157 (193)
                      +++++..|.+.+|.    +|..+++++|+.|. +|+++|+||++|||||++++..               ..++|++||+
T Consensus        12 ~~~~~~~~~p~~~~----~g~~~~~r~Y~~~~~~g~~~E~~~e~~~RVa~g~~~~~~~~~~~~~~~~~~~~~~~a~~~y~   87 (739)
T 1l1l_A           12 IDRVKASVKPHWGK----LGWVTYKRTYARWLPEKGRSENWDETVKRVVEGNINLDPRLQDSPSLELKQSLTEEAERLYK   87 (739)
T ss_dssp             HHHHHHHCCCCCCT----THHHHHHTTTCCEETTTTEECCHHHHHHHHHHHHHTTCGGGGSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCcCCCCcCh----hHHHHHHhhcccCCCCCCeecCHHHHHHHHHHHHHhhhhhcccccccccchhhHHHHHHHHH
Confidence            45788888887776    79999999999987 7888899999999999987742               1379999999


Q ss_pred             HHHhCccccCCccccccccCCC----C-CCccceeeeccC
Q psy15804        158 LLSEKYFTHAADVMLRTHAMSR----S-PRFSSFSLYGVR  192 (193)
Q Consensus       158 ~ls~~~~~~aTPtL~N~~aGt~----~-~~lsSCfl~~~~  192 (193)
                      +|++++|+||||||+|  |||+    + +||+|||+++|+
T Consensus        88 ~m~~~~~~pa~ptL~n--aGt~~~~~~~~~l~sCf~~~v~  125 (739)
T 1l1l_A           88 LIYGLGATPSGRNLWI--SGTDYQRRTGDSLNNCWFVAIR  125 (739)
T ss_dssp             HHHTTSEEECHHHHHH--TTSHHHHTSTTTTCCEEEEECS
T ss_pred             HHHhCCeeccChHHhh--cCCCccccCCCceeeeEEeecc
Confidence            9999999999999999  9998    3 389999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d1rlra1	212	a.98.1.1 (A:10-221) R1 subunit of ribonucleotide r	5e-30
d1peqa1	162	a.98.1.1 (A:13-174) R1 subunit of ribonucleotide r	4e-21

>d1rlra1 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 212

class: All alpha proteins
fold: R1 subunit of ribonucleotide reductase, N-terminal domain
superfamily: R1 subunit of ribonucleotide reductase, N-terminal domain
family: R1 subunit of ribonucleotide reductase, N-terminal domain
domain: R1 subunit of ribonucleotide reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  107 bits (268), Expect = 5e-30
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 11/173 (6%)

Query: 2   EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWS 61
           ++ L+     Y G+ T  +     + AA       PDY  L    L   +L K+    + 
Sbjct: 31  QVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYL-AARLAIFHLRKKAYGQFE 89

Query: 62  EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSY 121
                 + +   E G      +    +   +   ++++ I +DRD  +++   K LE  Y
Sbjct: 90  PPALYDHVVKMVEMG---KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKY 146

Query: 122 LMKN--NGRVVERPQHMLMRVAVGIHGE-----DIDAAIETYNLLSEKYFTHA 167
           L++N   G + E  Q + + VA  +         +      Y+ +S    +  
Sbjct: 147 LVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLP 199

>d1peqa1 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide reductase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 162

class: All alpha proteins
fold: R1 subunit of ribonucleotide reductase, N-terminal domain
superfamily: R1 subunit of ribonucleotide reductase, N-terminal domain
family: R1 subunit of ribonucleotide reductase, N-terminal domain
domain: R1 subunit of ribonucleotide reductase, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 83.0 bits (205), Expect = 4e-21
 Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 7/119 (5%)

Query: 51  NLHKETKKTWSEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 110
              +    T++   E L  +V +  G     +  ++         RL             
Sbjct: 35  THVRPHSVTFASQHERLGTLVRE--GYYDDAVLARYD---RAFVLRLFEHAHASGFRFQT 89

Query: 111 FFGFKTLERSYLMKNN--GRVVERPQHMLMRVAVGIHGEDIDAAIETYNLLSEKYFTHA 167
           F G      SY +K     R +E  +  +  VA+ +   D   A +  + +    F  A
Sbjct: 90  FLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPA 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d1rlra1	212	R1 subunit of ribonucleotide reductase, N-terminal	100.0
d1peqa1	162	R1 subunit of ribonucleotide reductase, N-terminal	99.97
d1l1la_	721	B12-dependent (class II) ribonucleotide reductase	97.57

>d1rlra1 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: R1 subunit of ribonucleotide reductase, N-terminal domain
superfamily: R1 subunit of ribonucleotide reductase, N-terminal domain
family: R1 subunit of ribonucleotide reductase, N-terminal domain
domain: R1 subunit of ribonucleotide reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.6e-54  Score=357.37  Aligned_cols=174  Identities=19%  Similarity=0.285  Sum_probs=154.5

Q ss_pred             hhhHHHHhccCCCCCHHHHHHHHHHHHhhcCCCCCCCchhchHHHHhchHHHHHHhhhHHHHHHHHHHhhhhccCccCCC
Q psy15804          2 EITLKVIKGLYPGVTTVQLDNLAAETAAFYEPLKHPDYAVLWLPELLCPNLHKETKKTWSEVIEELYNMVNKETGTRTPM   81 (193)
Q Consensus         2 ~i~~~~~~~l~d~itt~el~~~~~~~a~~~~~~~~pdy~~lA~aRl~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~   81 (193)
                      +|+.++..+++|||||+||+++++++|+++++.+||||+.|| |||++++|||++.++|++...  +...  ..+++.|.
T Consensus        31 ~i~~~v~~~lydgitt~eid~~~~~~a~~~it~~hPdY~~lA-aRi~l~~l~K~~~~~f~~~~~--~~~~--~~~~~~g~  105 (212)
T d1rlra1          31 QVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLA-ARLAIFHLRKKAYGQFEPPAL--YDHV--VKMVEMGK  105 (212)
T ss_dssp             HHHHHHHTTCCTTCCHHHHHHHHHHHHHTTCCSSSTTHHHHH-HHHHHHHHHHHHHSSSSCCCH--HHHH--HHHHHTTS
T ss_pred             HHHHHHHHcccCCccHHHHHHHHHHHhhhhhccchHHHHHHH-HHHHHHHHHHhccCCCCCchH--HHHH--Hhhhhccc
Confidence            578999999999999999999999999999777899999999 999999999999988775221  1111  12344556


Q ss_pred             CChHHH-HHHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc--CCeecCCHHHHHHHHHHHhhhc-----cHHHHH
Q psy15804         82 ISDKHY-EIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN--NGRVVERPQHMLMRVAVGIHGE-----DIDAAI  153 (193)
Q Consensus        82 l~~~~~-~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~--~g~~~E~pq~~~mrVA~~~~~~-----~~~~~~  153 (193)
                      +.+++. +|+++|+++|+++|+|+||+.|+|+|++||+++||+|+  +|+++|+||+|||||||++|++     ++++|+
T Consensus       106 ~~~~~l~~~~~~~~~~l~~~I~~~rD~~f~YfG~kTL~~~YLlk~~~~g~i~E~PQ~~~MRVAmgl~~~e~~~~~~~~a~  185 (212)
T d1rlra1         106 YDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVK  185 (212)
T ss_dssp             SCTHHHHHSCHHHHHHHHTTCCGGGGGGCCHHHHHHHHHHTSCBCSSTTCBCCCHHHHHHHHHHHHHTTSCTTTHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHhhHhhccccccCHHHHHHHHHhhcccccCCCeeCCchHHHHHHHHHHHhccCchhhHHHHHH
Confidence            666544 79999999999999999999999999999999999974  7999999999999999999986     689999


Q ss_pred             HHHHHHHhCccccCCccccccccCCCCCC
Q psy15804        154 ETYNLLSEKYFTHAADVMLRTHAMSRSPR  182 (193)
Q Consensus       154 ~~Y~~ls~~~~~~aTPtL~N~~aGt~~~~  182 (193)
                      +||++||+++|+||||||||  +|||++|
T Consensus       186 ~~Y~~lS~~~~t~aTPtl~n--agtp~~Q  212 (212)
T d1rlra1         186 RFYDAVSTFKISLPTPIMSG--VRTPTRQ  212 (212)
T ss_dssp             HHHHHHHTTSEECCHHHHHH--TTSSCCC
T ss_pred             HHHHHHhCCCcCCCCccccC--CCCCCCC
Confidence            99999999999999999999  9999987

>d1peqa1 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide reductase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: R1 subunit of ribonucleotide reductase, N-terminal domain
superfamily: R1 subunit of ribonucleotide reductase, N-terminal domain
family: R1 subunit of ribonucleotide reductase, N-terminal domain
domain: R1 subunit of ribonucleotide reductase, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=2.7e-33  Score=223.30  Aligned_cols=103  Identities=17%  Similarity=0.079  Sum_probs=97.2

Q ss_pred             CccCCCCChHHH-HHHHHhHHHHHHHhcccccCCCCchhhHhhhhhccccc-C-CeecCCHHHHHHHHHHHhhhccHHHH
Q psy15804         76 GTRTPMISDKHY-EIIMKNADRLNSAIIYDRDFNYNFFGFKTLERSYLMKN-N-GRVVERPQHMLMRVAVGIHGEDIDAA  152 (193)
Q Consensus        76 ~~~~~~l~~~~~-~~~~~~~~~l~~~i~~~rD~~f~y~g~~~l~~~Yl~k~-~-g~~~E~pq~~~mrVA~~~~~~~~~~~  152 (193)
                      +++.|++++++. .|+.+++++|++.|++.||..|+|+|+++|+++||+|+ + ++++|+||+|||||||+++.+|.++|
T Consensus        54 LV~~g~Yd~~il~~Ys~eeie~L~~~I~~~rd~~~ty~G~~~l~~~YllK~~d~~~~~E~pq~~~m~vAl~l~~~~~~~a  133 (162)
T d1peqa1          54 LVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLA  133 (162)
T ss_dssp             HHHTTSBCHHHHTTSCHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHTSCBCTTSSSBCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhcCcccHHHHHHccHHHHHHHHHHhhhccccccchHHHHHHHHHHhhccCCCCchhhCHHHHHHHHHHHHccCcHHHH
Confidence            567899999988 58999999999999999999999999999999999996 4 46889999999999999999999999


Q ss_pred             HHHHHHHHhCccccCCccccccccCCCC
Q psy15804        153 IETYNLLSEKYFTHAADVMLRTHAMSRS  180 (193)
Q Consensus       153 ~~~Y~~ls~~~~~~aTPtL~N~~aGt~~  180 (193)
                      +++|+.||+++|+||||||+|  ||+++
T Consensus       134 ~~~y~~~~~~~~~~aTPT~~N--aG~~~  159 (162)
T d1peqa1         134 TQLTDEMLSGRFQPATPTFLN--CGKQQ  159 (162)
T ss_dssp             HHHHHHHHHTSEEECHHHHHH--TTBSS
T ss_pred             HHHHHHHHhCCeeCCCcHhhh--CCCCC
Confidence            999999999999999999999  99875

>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide reductase {Lactobacillus leichmannii [TaxId: 28039]}

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: B12-dependent (class II) ribonucleotide reductase
domain: B12-dependent (class II) ribonucleotide reductase
species: Lactobacillus leichmannii [TaxId: 28039]

Probab=97.57  E-value=6e-05  Score=69.66  Aligned_cols=81  Identities=19%  Similarity=0.233  Sum_probs=63.4

Q ss_pred             CCchhhHhhhhhccc--ccCCeecCCHHHHHHHHHHHhhh---------------ccHHHHHHHHHHHHhCccccCCccc
Q psy15804        109 YNFFGFKTLERSYLM--KNNGRVVERPQHMLMRVAVGIHG---------------EDIDAAIETYNLLSEKYFTHAADVM  171 (193)
Q Consensus       109 f~y~g~~~l~~~Yl~--k~~g~~~E~pq~~~mrVA~~~~~---------------~~~~~~~~~Y~~ls~~~~~~aTPtL  171 (193)
                      ++-.|--+++++|.-  +.+|+. |+-.+..-||.-+...               ...+.+.++|++|.+++++|++|+|
T Consensus        20 ~~~l~~~v~~rtYaR~~~e~~~r-EtW~etv~R~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~k~lPsgR~L   98 (721)
T d1l1la_          20 WGKLGWVTYKRTYARWLPEKGRS-ENWDETVKRVVEGNINLDPRLQDSPSLELKQSLTEEAERLYKLIYGLGATPSGRNL   98 (721)
T ss_dssp             CCTTHHHHHHTTTCCEETTTTEE-CCHHHHHHHHHHHHHTTCGGGGSCCCHHHHHHHHHHHHHHHHHHHTTSEEECHHHH
T ss_pred             CCCcceeEEEEeecccCCCCCCc-cCHHHHHHHHHhhhHhhhHHhhhccccccchhhHHHHHHHHHHHhCCccCCChhHH
Confidence            556666788888884  445555 9999999999877531               0135788999999999999999999


Q ss_pred             cccccCCC----C-CCccceeeeccC
Q psy15804        172 LRTHAMSR----S-PRFSSFSLYGVR  192 (193)
Q Consensus       172 ~N~~aGt~----~-~~lsSCfl~~~~  192 (193)
                      .+  +||+    + ..+.+||.++++
T Consensus        99 ~~--aGt~~~~~~~~~~~NC~~~~~~  122 (721)
T d1l1la_          99 WI--SGTDYQRRTGDSLNNCWFVAIR  122 (721)
T ss_dssp             HH--TTSHHHHTSTTTTCCEEEEECS
T ss_pred             HH--cCChhhhcCCccccceeEeecc
Confidence            99  9984    3 478899998765