Psyllid ID: psy15811

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-
MSKICKVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMIDEFNTKKND
ccccccEEEEEccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccccEEEEccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHccccccccEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccccEEEEEEEEcccccccccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccccHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHcccccccc
ccccccEEEEccHHHHHHHHccccHHccccHHHHHHHHccHHHHHHHHHHHHHHcccEEEEccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEcccccEccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHcccccEEEEEEEEccccccccccHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHcccccEEEEccccEEEEcccHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHcHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccEccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHcccccEEEEEEEEccccccccccHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccccHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHcccccccc
mskickvklldgsftsqvsrhtikdvdghplwssvylttepeacVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSakdkenqtpdinlnKTFNLLTGhietaasigpygtvlrdgseysghyvdsmtEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREfpgqkawlsfsckddthtshgeLISSAVTScllanpdqiqaigvncvrpshvsTLVRCikqshptvqtivypnkgvklldgsftsqvsrhtikdvdghplwssvylttepeacvETHRDFIRGHIEtaasigpygtvlrdgseysghyvdsmtEADLIAWHRPNVEALVRAGVDYLAlikpsissqtaasigpygtvlrdgseysghyvdsmtEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREfpgqkawlsfsckddthtshgeLISSAVTScllanpdqiqaigvncvrpshvsTLVRCikqshptvqtivypnkggvwdsvhmkwldtedeYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMIDEFNTKKND
mskickvklldgsftsqvsrhtikdvdghpLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAkdkenqtpdiNLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRcikqshptvqtivypnkgvklLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIetaasigpygtVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKpsissqtaasigpYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIkqshptvqtivypnkGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMIdefntkknd
MSKICKVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPaekealalvkllREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPaekealalvkllREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMIDEFNTKKND
***ICKVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHK*****************INLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMIDE*******
***ICKV*LLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMI**FN*****
MSKICKVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMIDEFNTKKND
**KICKVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMIDEFN*****
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MSKICKVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIETAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMIDEFNTKKND
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query581 2.2.26 [Sep-21-2011]
O31463315 Homocysteine S-methyltran yes N/A 0.418 0.771 0.394 1e-41
Q9SDL7326 Homocysteine S-methyltran yes N/A 0.419 0.748 0.384 5e-36
Q47690310 Homocysteine S-methyltran N/A N/A 0.500 0.938 0.333 6e-36
Q9M1W4333 Homocysteine S-methyltran no N/A 0.423 0.738 0.361 2e-35
Q8LAX0347 Homocysteine S-methyltran no N/A 0.499 0.835 0.318 2e-35
A4ZGQ8326 Homocysteine S-methyltran N/A N/A 0.447 0.797 0.361 1e-34
Q9FUN0323 Homocysteine S-methyltran N/A N/A 0.425 0.764 0.361 3e-34
Q4VNK0346 Selenocysteine Se-methylt N/A N/A 0.421 0.708 0.358 3e-32
Q9FUM7342 Homocysteine S-methyltran N/A N/A 0.416 0.707 0.347 1e-31
Q9FUM8338 Homocysteine S-methyltran N/A N/A 0.447 0.769 0.333 2e-31
>sp|O31463|HMT_BACSU Homocysteine S-methyltransferase YbgG OS=Bacillus subtilis (strain 168) GN=ybgG PE=4 SV=1 Back     alignment and function desciption
 Score =  171 bits (433), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/256 (39%), Positives = 145/256 (56%), Gaps = 13/256 (5%)

Query: 9   LLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQANV 68
           +LDG+  +++ R      D   LWS+  L  EPE   + H D+  AGAD   ++ YQ+  
Sbjct: 15  VLDGAMATELERKGCNLNDS--LWSAKILMEEPELIKQVHTDYFAAGADCAITASYQSTF 72

Query: 69  DNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIGPYG 128
           +     G SE EA  L+  SV +   A+D+     +  LN+   ++      AASIGPYG
Sbjct: 73  EGFAARGLSEAEARRLIELSVSIAAEARDEFWSLEENRLNRPKPII------AASIGPYG 126

Query: 129 TVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLR 188
             L DGSEY G+Y  +++E +LI +HRP ++AL+ AG D LA ETIP   EA A+V+LL+
Sbjct: 127 AYLADGSEYRGNY--AISEDELIEFHRPRMKALIEAGADVLACETIPCLTEAKAIVRLLK 184

Query: 189 EFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCI 248
           EFP   AW+SFS KD  H S G    +A  +  L    QI A+G+NC    H+ +L+  +
Sbjct: 185 EFPETYAWISFSAKDGLHISDG--TPAADCASWLDEHRQIAALGINCTPLQHIPSLIEEL 242

Query: 249 KQSHPTVQTIVYPNKG 264
           K+ + +   IVYPN G
Sbjct: 243 KK-NTSKPIIVYPNSG 257

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0
>sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1 PE=1 SV=1 Back     alignment and function description
>sp|Q47690|MMUM_ECOLI Homocysteine S-methyltransferase OS=Escherichia coli (strain K12) GN=mmuM PE=1 SV=2 Back     alignment and function description
>sp|Q9M1W4|HMT2_ARATH Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1 Back     alignment and function description
>sp|Q8LAX0|HMT3_ARATH Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2 Back     alignment and function description
>sp|A4ZGQ8|HMT1_BRAOT Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica GN=HMT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FUN0|HMT1_MAIZE Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1 Back     alignment and function description
>sp|Q4VNK0|SMTA_BRAOT Selenocysteine Se-methyltransferase OS=Brassica oleracea var. italica GN=SMT PE=1 SV=1 Back     alignment and function description
>sp|Q9FUM7|HMT4_MAIZE Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1 Back     alignment and function description
>sp|Q9FUM8|HMT3_MAIZE Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query581
242007818312 Homocysteine S-methyltransferase, putati 0.528 0.983 0.373 2e-57
307193337323 Homocysteine S-methyltransferase 2 [Harp 0.430 0.773 0.473 2e-57
389611259343 5-methyltetrahydrofolate [Papilio polyte 0.430 0.728 0.451 7e-57
389612076285 5-methyltetrahydrofolate, partial [Papil 0.430 0.877 0.440 8e-56
383862151319 PREDICTED: homocysteine S-methyltransfer 0.437 0.796 0.446 3e-55
114052514325 homocysteine S-methyltransferase [Bombyx 0.430 0.769 0.437 6e-55
322800889318 hypothetical protein SINV_01371 [Solenop 0.444 0.811 0.438 9e-55
322800888322 hypothetical protein SINV_00334 [Solenop 0.432 0.779 0.441 9e-55
307193338321 Homocysteine S-methyltransferase [Harpeg 0.442 0.800 0.426 1e-54
328782294320 PREDICTED: homocysteine S-methyltransfer 0.433 0.787 0.439 1e-54
>gi|242007818|ref|XP_002424718.1| Homocysteine S-methyltransferase, putative [Pediculus humanus corporis] gi|212508211|gb|EEB11980.1| Homocysteine S-methyltransferase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 177/316 (56%), Gaps = 9/316 (2%)

Query: 265 VKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIETAASIGPYG 324
           +K+LDG F++Q++R+    +DG PLWS+ +L T PEA + +H DF++   E   +   Y 
Sbjct: 4   IKVLDGGFSTQLARYVGDIIDGDPLWSARFLYTNPEAVINSHLDFLKAGAEIIIT-NSYQ 62

Query: 325 TVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYG 384
             +    EY G   D     DLI   + +V    RA   YL    P      A S+GPYG
Sbjct: 63  ASISGFKEYLG--CDETEGYDLI---KSSVRFAKRARDLYLE-TNPGARPLIAGSVGPYG 116

Query: 385 TVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLR 444
             L DGSEY+G Y+D + +  +++WHRP +  L+  GVD LA ETIPA KE   L++LL+
Sbjct: 117 ASLHDGSEYTGEYMDKVDKDAIMSWHRPRITGLIEEGVDLLAFETIPAFKEGEFLLELLK 176

Query: 445 EFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLVRCI 504
           EFP QKAWLSF CK+  HT+ GE     +  C   N +Q+ A+G NC+ P +VS L + I
Sbjct: 177 EFPKQKAWLSFQCKNSEHTAKGENFQEVIKKCWSMNKEQLVAVGCNCLSPKYVSKLFKGI 236

Query: 505 KQSHP-TVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSY 563
            ++    +  IVYPN G  +   ++ W   E  +++     +W + GV  IGGCC   + 
Sbjct: 237 NENRTDKIPLIVYPNSGEEYIP-NIGWFGNEKLFNMNKLFGEWFDYGVKYIGGCCRTNAD 295

Query: 564 EIQQMRIMIDEFNTKK 579
           +++ +   + ++N KK
Sbjct: 296 DVKNISNAVKQWNLKK 311

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307193337|gb|EFN76199.1| Homocysteine S-methyltransferase 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|389611259|dbj|BAM19241.1| 5-methyltetrahydrofolate [Papilio polytes] Back     alignment and taxonomy information
>gi|389612076|dbj|BAM19564.1| 5-methyltetrahydrofolate, partial [Papilio xuthus] Back     alignment and taxonomy information
>gi|383862151|ref|XP_003706547.1| PREDICTED: homocysteine S-methyltransferase ybgG-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|114052514|ref|NP_001040249.1| homocysteine S-methyltransferase [Bombyx mori] gi|87248513|gb|ABD36309.1| homocysteine S-methyltransferase [Bombyx mori] Back     alignment and taxonomy information
>gi|322800889|gb|EFZ21732.1| hypothetical protein SINV_01371 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|322800888|gb|EFZ21731.1| hypothetical protein SINV_00334 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307193338|gb|EFN76200.1| Homocysteine S-methyltransferase [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|328782294|ref|XP_003250116.1| PREDICTED: homocysteine S-methyltransferase ybgG-like [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query581
FB|FBgn0032727331 CG10623 [Drosophila melanogast 0.535 0.939 0.327 1.9e-44
FB|FBgn0032726331 CG10621 [Drosophila melanogast 0.524 0.921 0.339 4e-42
ZFIN|ZDB-GENE-030131-9545311 zgc:172121 "zgc:172121" [Danio 0.419 0.784 0.361 3.7e-39
UNIPROTKB|Q47690310 mmuM [Escherichia coli K-12 (t 0.526 0.987 0.312 6.6e-35
TAIR|locus:2094419347 HMT3 "homocysteine S-methyltra 0.516 0.864 0.309 1.7e-33
TAIR|locus:2077234333 HMT2 "homocysteine methyltrans 0.426 0.744 0.337 4.8e-33
TAIR|locus:2092120326 HMT-1 [Arabidopsis thaliana (t 0.432 0.769 0.356 1.1e-32
UNIPROTKB|A4ZGQ8326 HMT1 "Homocysteine S-methyltra 0.432 0.769 0.352 8.7e-32
UNIPROTKB|Q4VNK0346 SMT "Selenocysteine Se-methylt 0.423 0.710 0.337 7e-31
CGD|CAL0004923311 SAM4 [Candida albicans (taxid: 0.512 0.958 0.278 1.7e-22
FB|FBgn0032727 CG10623 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 108/330 (32%), Positives = 173/330 (52%)

Query:   260 YPNKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIETAAS 319
             +  K + +  G F+SQ++++  + VDG PLW S +  T PEA ++TH DF+R   +   +
Sbjct:     9 WDTKPILVKCGGFSSQLAKNVTEKVDGDPLWGSRFDATNPEAVIQTHLDFLRNGADIILT 68

Query:   320 IGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTA-- 377
                Y + +    +Y G  V      +LI   + +V+   +A   YL+ I     S     
Sbjct:    69 -NTYQSSVEGFVKYLG--VTRERGVELI---QKSVQLAKQAKEQYLSEIGSEAESALPLI 122

Query:   378 -ASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPXXXXX 436
               SIGPYG  L DGSEY+G+Y D M++ +L AWH+  +E  + AGVD LALET+P     
Sbjct:   123 MGSIGPYGAYLHDGSEYTGNYADKMSKEELRAWHKTRIEICLAAGVDGLALETLPCLMEA 182

Query:   437 XXXXXXXRE-FPGQKAWLSFSCKDDTHTSHGELISSAVTSC--LLAN---PDQIQAIGVN 490
                     + FP  K W+S  C D+ H + GE  + A  S   L+ +    +++  IG+N
Sbjct:   183 EAVTELVLDNFPDAKFWVSLQCMDEKHMASGENFAEAALSLWRLVQSRKAENRLLGIGLN 242

Query:   491 CVRPSHVSTLVRCIKQ--SHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLE 548
             CV P  V+ L+  + +      +  +VY N+G ++D     W  T +E  ++ +VP+W++
Sbjct:   243 CVNPLFVTPLLSSLTKVAGSDRIPLVVYSNRGEIYDVEQGDWTGTGEE--VVKFVPEWIQ 300

Query:   549 EGVNIIGGCCEVTSYEIQQMRIMIDEFNTK 578
              GV I+GGCC V   ++  +R  +D  N K
Sbjct:   301 LGVRIVGGCCRVYPTDVLAIRKYVDGLNIK 330
GO:0016205 "selenocysteine methyltransferase activity" evidence=ISS
GO:0008898 "homocysteine S-methyltransferase activity" evidence=IEA
FB|FBgn0032726 CG10621 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9545 zgc:172121 "zgc:172121" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q47690 mmuM [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TAIR|locus:2094419 HMT3 "homocysteine S-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077234 HMT2 "homocysteine methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092120 HMT-1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A4ZGQ8 HMT1 "Homocysteine S-methyltransferase 1" [Brassica oleracea var. italica (taxid:36774)] Back     alignment and assigned GO terms
UNIPROTKB|Q4VNK0 SMT "Selenocysteine Se-methyltransferase" [Brassica oleracea var. italica (taxid:36774)] Back     alignment and assigned GO terms
CGD|CAL0004923 SAM4 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query581
PRK09485304 PRK09485, mmuM, homocysteine methyltransferase; Pr 2e-79
PRK09485304 PRK09485, mmuM, homocysteine methyltransferase; Pr 1e-76
PLN02489335 PLN02489, PLN02489, homocysteine S-methyltransfera 1e-59
PLN02489335 PLN02489, PLN02489, homocysteine S-methyltransfera 1e-54
COG2040300 COG2040, MHT1, Homocysteine/selenocysteine methyla 3e-52
COG2040300 COG2040, MHT1, Homocysteine/selenocysteine methyla 2e-48
pfam02574303 pfam02574, S-methyl_trans, Homocysteine S-methyltr 2e-38
pfam02574303 pfam02574, S-methyl_trans, Homocysteine S-methyltr 3e-38
COG0646311 COG0646, MetH, Methionine synthase I (cobalamin-de 4e-13
PRK08645612 PRK08645, PRK08645, bifunctional homocysteine S-me 9e-13
PRK08645 612 PRK08645, PRK08645, bifunctional homocysteine S-me 2e-11
COG0646311 COG0646, MetH, Methionine synthase I (cobalamin-de 5e-11
TIGR02082 1178 TIGR02082, metH, 5-methyltetrahydrofolate--homocys 2e-08
TIGR02082 1178 TIGR02082, metH, 5-methyltetrahydrofolate--homocys 9e-07
PRK07534336 PRK07534, PRK07534, methionine synthase I; Validat 1e-05
PRK07534336 PRK07534, PRK07534, methionine synthase I; Validat 5e-04
>gnl|CDD|181899 PRK09485, mmuM, homocysteine methyltransferase; Provisional Back     alignment and domain information 
 Score =  252 bits (646), Expect = 2e-79
 Identities = 101/260 (38%), Positives = 138/260 (53%), Gaps = 22/260 (8%)

Query: 6   KVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQ 65
            V +LDG+  +++      D++   LWS+  L   PE   + H D+ RAGAD   ++ YQ
Sbjct: 12  PVLILDGALATELEARGC-DLND-SLWSAKVLLENPELIYQVHLDYFRAGADCAITASYQ 69

Query: 66  ANVDNLTKLGYSEQEALDLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAASIG 125
           A        G SE EA +L+ +SV+L   A+D                       A S+G
Sbjct: 70  ATFQGFAARGLSEAEAEELIRRSVELAKEARD--------------EFWAEKPLVAGSVG 115

Query: 126 PYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVK 185
           PYG  L DGSEY G Y   ++E +L  +HRP +EAL  AG D LA ETIP   EA ALV+
Sbjct: 116 PYGAYLADGSEYRGDY--GLSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVE 173

Query: 186 LLR-EFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTL 244
           LL+ EFPG  AWLSF+ +D TH S G  ++ A    LLA   Q+ A+GVNC  P  V+  
Sbjct: 174 LLKEEFPGVPAWLSFTLRDGTHISDGTPLAEAAA--LLAASPQVVAVGVNCTAPELVTAA 231

Query: 245 VRCIKQSHPTVQTIVYPNKG 264
           +  ++ +      +VYPN G
Sbjct: 232 IAALR-AVTDKPLVVYPNSG 250

Length = 304
>gnl|CDD|181899 PRK09485, mmuM, homocysteine methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|215269 PLN02489, PLN02489, homocysteine S-methyltransferase Back     alignment and domain information
>gnl|CDD|215269 PLN02489, PLN02489, homocysteine S-methyltransferase Back     alignment and domain information
>gnl|CDD|224951 COG2040, MHT1, Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|224951 COG2040, MHT1, Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|217114 pfam02574, S-methyl_trans, Homocysteine S-methyltransferase Back     alignment and domain information
>gnl|CDD|217114 pfam02574, S-methyl_trans, Homocysteine S-methyltransferase Back     alignment and domain information
>gnl|CDD|223719 COG0646, MetH, Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236321 PRK08645, PRK08645, bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>gnl|CDD|236321 PRK08645, PRK08645, bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>gnl|CDD|223719 COG0646, MetH, Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>gnl|CDD|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>gnl|CDD|236045 PRK07534, PRK07534, methionine synthase I; Validated Back     alignment and domain information
>gnl|CDD|236045 PRK07534, PRK07534, methionine synthase I; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 581
PLN02489335 homocysteine S-methyltransferase 100.0
KOG1579|consensus317 100.0
PRK09485304 mmuM homocysteine methyltransferase; Provisional 100.0
COG2040300 MHT1 Homocysteine/selenocysteine methylase (S-meth 100.0
PLN02489335 homocysteine S-methyltransferase 100.0
PRK09485304 mmuM homocysteine methyltransferase; Provisional 100.0
COG0646311 MetH Methionine synthase I (cobalamin-dependent), 100.0
KOG1579|consensus317 100.0
PRK07534336 methionine synthase I; Validated 100.0
PF02574305 S-methyl_trans: Homocysteine S-methyltransferase; 100.0
COG0646311 MetH Methionine synthase I (cobalamin-dependent), 100.0
PRK07534336 methionine synthase I; Validated 100.0
PRK08645612 bifunctional homocysteine S-methyltransferase/5,10 100.0
COG2040300 MHT1 Homocysteine/selenocysteine methylase (S-meth 100.0
PF02574305 S-methyl_trans: Homocysteine S-methyltransferase; 100.0
PRK09490 1229 metH B12-dependent methionine synthase; Provisiona 100.0
PRK09490 1229 metH B12-dependent methionine synthase; Provisiona 100.0
TIGR02082 1178 metH 5-methyltetrahydrofolate--homocysteine methyl 100.0
TIGR02082 1178 metH 5-methyltetrahydrofolate--homocysteine methyl 100.0
PRK08645 612 bifunctional homocysteine S-methyltransferase/5,10 100.0
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 94.29
PF03437254 BtpA: BtpA family; InterPro: IPR005137 Photosystem 93.3
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 92.61
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 91.99
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 91.73
cd04823320 ALAD_PBGS_aspartate_rich Porphobilinogen synthase 91.47
PRK00311264 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 91.38
cd00951289 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also 91.33
TIGR00222263 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 91.31
cd06557254 KPHMT-like Ketopantoate hydroxymethyltransferase ( 91.28
PRK05458326 guanosine 5'-monophosphate oxidoreductase; Provisi 91.27
TIGR01163210 rpe ribulose-phosphate 3-epimerase. This family co 90.76
cd00384314 ALAD_PBGS Porphobilinogen synthase (PBGS), which i 90.66
PLN02591250 tryptophan synthase 90.62
TIGR01037300 pyrD_sub1_fam dihydroorotate dehydrogenase (subfam 90.62
cd06557254 KPHMT-like Ketopantoate hydroxymethyltransferase ( 90.58
cd00408281 DHDPS-like Dihydrodipicolinate synthase family. A 90.46
PRK09283323 delta-aminolevulinic acid dehydratase; Validated 90.37
TIGR00683290 nanA N-acetylneuraminate lyase. N-acetylneuraminat 90.35
PLN02274505 inosine-5'-monophosphate dehydrogenase 90.34
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 90.24
TIGR02320285 PEP_mutase phosphoenolpyruvate phosphomutase. A cl 90.24
cd04824320 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthas 89.83
PRK06852304 aldolase; Validated 89.78
cd02801231 DUS_like_FMN Dihydrouridine synthase-like (DUS-lik 89.7
PRK13384322 delta-aminolevulinic acid dehydratase; Provisional 89.63
COG0329299 DapA Dihydrodipicolinate synthase/N-acetylneuramin 89.52
PRK03620303 5-dehydro-4-deoxyglucarate dehydratase; Provisiona 89.48
PRK07565334 dihydroorotate dehydrogenase 2; Reviewed 89.35
PF00490324 ALAD: Delta-aminolevulinic acid dehydratase; Inter 89.26
PF00701289 DHDPS: Dihydrodipicolinate synthetase family; Inte 89.24
PRK06843404 inosine 5-monophosphate dehydrogenase; Validated 89.17
cd00408281 DHDPS-like Dihydrodipicolinate synthase family. A 89.13
PRK10415 321 tRNA-dihydrouridine synthase B; Provisional 89.11
PRK15452 443 putative protease; Provisional 89.04
cd00952309 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate 89.03
PRK07259301 dihydroorotate dehydrogenase 1B; Reviewed 88.93
PRK00311264 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 88.81
TIGR03249296 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh 88.75
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 88.55
PRK05581220 ribulose-phosphate 3-epimerase; Validated 88.32
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 88.32
cd02803327 OYE_like_FMN_family Old yellow enzyme (OYE)-like F 88.28
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 88.08
PF00701289 DHDPS: Dihydrodipicolinate synthetase family; Inte 88.07
PRK12581468 oxaloacetate decarboxylase; Provisional 87.91
TIGR00683290 nanA N-acetylneuraminate lyase. N-acetylneuraminat 87.74
PRK13384322 delta-aminolevulinic acid dehydratase; Provisional 87.62
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 87.59
PRK03620303 5-dehydro-4-deoxyglucarate dehydratase; Provisiona 87.53
TIGR01463340 mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi 87.44
TIGR02317285 prpB methylisocitrate lyase. Members of this famil 87.3
PRK07259301 dihydroorotate dehydrogenase 1B; Reviewed 87.27
TIGR00674285 dapA dihydrodipicolinate synthase. Dihydrodipicoli 87.19
cd02940299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 87.07
TIGR03217333 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. 87.02
PRK15063428 isocitrate lyase; Provisional 86.99
TIGR02320285 PEP_mutase phosphoenolpyruvate phosphomutase. A cl 86.98
TIGR00262256 trpA tryptophan synthase, alpha subunit. Tryptopha 86.84
cd00952 309 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate 86.81
PRK13111258 trpA tryptophan synthase subunit alpha; Provisiona 86.68
PF03437254 BtpA: BtpA family; InterPro: IPR005137 Photosystem 86.38
cd00950284 DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke 86.32
TIGR01037300 pyrD_sub1_fam dihydroorotate dehydrogenase (subfam 86.28
cd08205367 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l 86.21
cd06556240 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup 86.07
TIGR02127261 pyrF_sub2 orotidine 5'-phosphate decarboxylase, su 86.05
cd04733338 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN 86.04
PRK12331448 oxaloacetate decarboxylase; Provisional 85.79
cd00954288 NAL N-Acetylneuraminic acid aldolase, also called 85.63
cd00951289 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also 85.61
cd04722200 TIM_phosphate_binding TIM barrel proteins share a 85.51
PF01208343 URO-D: Uroporphyrinogen decarboxylase (URO-D); Int 85.51
PRK00865261 glutamate racemase; Provisional 85.44
cd02930353 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin 85.42
TIGR00737319 nifR3_yhdG putative TIM-barrel protein, nifR3 fami 85.33
cd02940299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 85.09
PRK11320292 prpB 2-methylisocitrate lyase; Provisional 84.98
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 84.95
TIGR01858282 tag_bisphos_ald class II aldolase, tagatose bispho 84.88
PRK09195284 gatY tagatose-bisphosphate aldolase; Reviewed 84.85
PF00490324 ALAD: Delta-aminolevulinic acid dehydratase; Inter 84.8
PRK09250348 fructose-bisphosphate aldolase; Provisional 84.68
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 84.68
PRK04147293 N-acetylneuraminate lyase; Provisional 84.61
PRK09282592 pyruvate carboxylase subunit B; Validated 84.57
PRK03170292 dihydrodipicolinate synthase; Provisional 84.54
TIGR03249296 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh 84.44
cd00465306 URO-D_CIMS_like The URO-D_CIMS_like protein superf 84.32
cd00950284 DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke 84.29
PLN02424332 ketopantoate hydroxymethyltransferase 84.14
PLN02417280 dihydrodipicolinate synthase 83.85
TIGR01769205 GGGP geranylgeranylglyceryl phosphate synthase. Th 83.78
COG0329299 DapA Dihydrodipicolinate synthase/N-acetylneuramin 83.68
COG1646240 Predicted phosphate-binding enzymes, TIM-barrel fo 83.64
TIGR00737 319 nifR3_yhdG putative TIM-barrel protein, nifR3 fami 83.56
TIGR01769205 GGGP geranylgeranylglyceryl phosphate synthase. Th 83.44
PRK07565334 dihydroorotate dehydrogenase 2; Reviewed 83.38
PF01116287 F_bP_aldolase: Fructose-bisphosphate aldolase clas 83.31
TIGR02313294 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac 82.88
PRK15063428 isocitrate lyase; Provisional 82.77
PRK05286344 dihydroorotate dehydrogenase 2; Reviewed 82.77
PRK05567486 inosine 5'-monophosphate dehydrogenase; Reviewed 82.71
PRK10415321 tRNA-dihydrouridine synthase B; Provisional 82.57
PRK05286344 dihydroorotate dehydrogenase 2; Reviewed 82.57
TIGR01302450 IMP_dehydrog inosine-5'-monophosphate dehydrogenas 82.48
PRK13523337 NADPH dehydrogenase NamA; Provisional 82.17
cd08210364 RLP_RrRLP Ribulose bisphosphate carboxylase like p 81.72
cd00954288 NAL N-Acetylneuraminic acid aldolase, also called 81.65
cd04734343 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN 81.63
TIGR00222263 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 81.57
PRK02506310 dihydroorotate dehydrogenase 1A; Reviewed 81.5
cd00953279 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas 81.22
PF00478352 IMPDH: IMP dehydrogenase / GMP reductase domain; I 81.13
cd07943263 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te 80.87
cd07937275 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar 80.81
cd00429211 RPE Ribulose-5-phosphate 3-epimerase (RPE). This e 80.72
cd00537274 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 80.58
cd07937275 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar 80.53
PRK12677384 xylose isomerase; Provisional 80.5
PRK13111258 trpA tryptophan synthase subunit alpha; Provisiona 80.41
KOG2335|consensus358 80.32
COG5016472 Pyruvate/oxaloacetate carboxyltransferase [Energy 80.29
>PLN02489 homocysteine S-methyltransferase Back     alignment and domain information 
Probab=100.00  E-value=3.4e-64  Score=525.10  Aligned_cols=294  Identities=32%  Similarity=0.574  Sum_probs=262.0

Q ss_pred             CccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHH---HHhhc---CCcccccccccCCCCCCCcc
Q psy15811        264 GVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRG---HIETA---ASIGPYGTVLRDGSEYSGHY  337 (581)
Q Consensus       264 g~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tn---a~~~~~~~~~~~~~~~~~~~  337 (581)
                      .++++||||||+|+++ |.++. +|+|++.+++++||.|+++|++|++|   ||+||   ++..++.++           
T Consensus        21 ~~lilDGgmGT~Le~~-g~~~~-~~lws~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~-----------   87 (335)
T PLN02489         21 GCAVIDGGFATELERH-GADLN-DPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFESR-----------   87 (335)
T ss_pred             CEEEEEChHHHHHHhC-CCCCC-CCccchhhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHHc-----------
Confidence            3678999999999997 98874 68999999999999999999999999   99999   555555554           


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc-----------CCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHH
Q psy15811        338 VDSMTEADLIAWHRPNVEALVRAGVDYLALI-----------KPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADL  406 (581)
Q Consensus       338 ~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~-----------~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~  406 (581)
                       + ++.++++++++++|++|++|++++....           ..+++++|+|||||+|+++.+|+||+|+|.+.++++++
T Consensus        88 -g-~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~  165 (335)
T PLN02489         88 -G-LSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKL  165 (335)
T ss_pred             -C-CCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHH
Confidence             3 6678899999999999999998763210           01346899999999999999999999999977999999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcC-CCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCce
Q psy15811        407 IAWHRPNVEALVRAGVDYLALETIPAEKEALALVKLLREFP-GQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQ  485 (581)
Q Consensus       407 ~~~~~~~~~~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~-~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~  485 (581)
                      +++|++|++.|.++|||+|+|||||++.|++++++++++.. ++|+|+||+|++++++++|+++.+++..+.  ...+++
T Consensus       166 ~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~--~~~~~~  243 (335)
T PLN02489        166 KDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIAD--SCKKVV  243 (335)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHH--hcCCce
Confidence            99999999999999999999999999999999999999753 699999999999999999999999999883  345789


Q ss_pred             EEEECCCCCccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccC--CcCHHHHHHHHHHHHHcCCcEEeecCCCchH
Q psy15811        486 AIGVNCVRPSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLD--TEDEYSILHYVPQWLEEGVNIIGGCCEVTSY  563 (581)
Q Consensus       486 ~iGiNC~~p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~--~~~~~~~~~~~~~w~~~G~~iiGGCCGt~P~  563 (581)
                      +||+||++|+++.++|++++... +.|+++|||+|.+|+...+.|..  ..+|++|++++++|++.|++||||||||||+
T Consensus       244 ~iGiNC~~p~~~~~~l~~l~~~~-~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iIGGCCgt~P~  322 (335)
T PLN02489        244 AVGINCTPPRFIHGLILSIRKVT-SKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLIGGCCRTTPN  322 (335)
T ss_pred             EEEecCCCHHHHHHHHHHHHhhc-CCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCCHH
Confidence            99999999999999999998876 58999999999999887677863  3458899999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q psy15811        564 EIQQMRIMIDEF  575 (581)
Q Consensus       564 hI~al~~~l~~~  575 (581)
                      ||++|++.++.+
T Consensus       323 hI~al~~~l~~~  334 (335)
T PLN02489        323 TIRAISKALSER  334 (335)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999754

>KOG1579|consensus Back     alignment and domain information
>PRK09485 mmuM homocysteine methyltransferase; Provisional Back     alignment and domain information
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02489 homocysteine S-methyltransferase Back     alignment and domain information
>PRK09485 mmuM homocysteine methyltransferase; Provisional Back     alignment and domain information
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1579|consensus Back     alignment and domain information
>PRK07534 methionine synthase I; Validated Back     alignment and domain information
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2 Back     alignment and domain information
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07534 methionine synthase I; Validated Back     alignment and domain information
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism] Back     alignment and domain information
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2 Back     alignment and domain information
>PRK09490 metH B12-dependent methionine synthase; Provisional Back     alignment and domain information
>PRK09490 metH B12-dependent methionine synthase; Provisional Back     alignment and domain information
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed Back     alignment and domain information
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases Back     alignment and domain information
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase Back     alignment and domain information
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>TIGR01163 rpe ribulose-phosphate 3-epimerase Back     alignment and domain information
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein Back     alignment and domain information
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway Back     alignment and domain information
>cd00408 DHDPS-like Dihydrodipicolinate synthase family Back     alignment and domain information
>PRK09283 delta-aminolevulinic acid dehydratase; Validated Back     alignment and domain information
>TIGR00683 nanA N-acetylneuraminate lyase Back     alignment and domain information
>PLN02274 inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase Back     alignment and domain information
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>PRK06852 aldolase; Validated Back     alignment and domain information
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain Back     alignment and domain information
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional Back     alignment and domain information
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional Back     alignment and domain information
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway [] Back     alignment and domain information
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants Back     alignment and domain information
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>cd00408 DHDPS-like Dihydrodipicolinate synthase family Back     alignment and domain information
>PRK10415 tRNA-dihydrouridine synthase B; Provisional Back     alignment and domain information
>PRK15452 putative protease; Provisional Back     alignment and domain information
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed Back     alignment and domain information
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>PRK05581 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants Back     alignment and domain information
>PRK12581 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>TIGR00683 nanA N-acetylneuraminate lyase Back     alignment and domain information
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional Back     alignment and domain information
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family Back     alignment and domain information
>TIGR02317 prpB methylisocitrate lyase Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>TIGR00674 dapA dihydrodipicolinate synthase Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase Back     alignment and domain information
>PRK15063 isocitrate lyase; Provisional Back     alignment and domain information
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase Back     alignment and domain information
>TIGR00262 trpA tryptophan synthase, alpha subunit Back     alignment and domain information
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) Back     alignment and domain information
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane Back     alignment and domain information
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis Back     alignment and domain information
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein Back     alignment and domain information
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV Back     alignment and domain information
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds Back     alignment and domain information
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2 Back     alignment and domain information
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 Back     alignment and domain information
>PRK12331 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) Back     alignment and domain information
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases Back     alignment and domain information
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure Back     alignment and domain information
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] Back     alignment and domain information
>PRK00865 glutamate racemase; Provisional Back     alignment and domain information
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain Back     alignment and domain information
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>PRK11320 prpB 2-methylisocitrate lyase; Provisional Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family Back     alignment and domain information
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed Back     alignment and domain information
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway [] Back     alignment and domain information
>PRK09250 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>PRK04147 N-acetylneuraminate lyase; Provisional Back     alignment and domain information
>PRK09282 pyruvate carboxylase subunit B; Validated Back     alignment and domain information
>PRK03170 dihydrodipicolinate synthase; Provisional Back     alignment and domain information
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase Back     alignment and domain information
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis Back     alignment and domain information
>PLN02424 ketopantoate hydroxymethyltransferase Back     alignment and domain information
>PLN02417 dihydrodipicolinate synthase Back     alignment and domain information
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase Back     alignment and domain information
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] Back     alignment and domain information
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family Back     alignment and domain information
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase Back     alignment and domain information
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate Back     alignment and domain information
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>PRK15063 isocitrate lyase; Provisional Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed Back     alignment and domain information
>PRK10415 tRNA-dihydrouridine synthase B; Provisional Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>PRK13523 NADPH dehydrogenase NamA; Provisional Back     alignment and domain information
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R Back     alignment and domain information
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) Back     alignment and domain information
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 Back     alignment and domain information
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase Back     alignment and domain information
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed Back     alignment and domain information
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea Back     alignment and domain information
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase Back     alignment and domain information
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain Back     alignment and domain information
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) Back     alignment and domain information
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR) Back     alignment and domain information
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain Back     alignment and domain information
>PRK12677 xylose isomerase; Provisional Back     alignment and domain information
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>KOG2335|consensus Back     alignment and domain information
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query581
1lt8_A406 Betaine-homocysteine methyltransferase; homocystei 3e-23
1lt8_A406 Betaine-homocysteine methyltransferase; homocystei 7e-23
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 1e-09
1q7z_A566 5-methyltetrahydrofolate S-homocysteine methyltran 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Length = 406 Back     alignment and structure
 Score =  101 bits (253), Expect = 3e-23
 Identities = 48/279 (17%), Positives = 91/279 (32%), Gaps = 50/279 (17%)

Query: 6   KVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRAGADIIQSSCYQ 65
           ++ + DG F   + +           W+       PEA  + HR+F+RAG++++Q+  + 
Sbjct: 21  EIVIGDGGFVFALEKRGYVKAGP---WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFY 77

Query: 66  ANVDNLTKLGYSEQEAL---DLLHKSVQLMNSAKDKENQTPDINLNKTFNLLTGHIETAA 122
           A+ D L   G    E +   ++   +  +     D+                 G    A 
Sbjct: 78  ASEDKLENRGNYVLEKISGQEVNEAAADIARQVADE-----------------GDALVAG 120

Query: 123 SIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALA 182
            +            Y        +E ++       +E  ++  VD+L  E     +EA+ 
Sbjct: 121 GVSQTP-------SYLSA----KSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVW 169

Query: 183 LVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVR-PSHV 241
            V+ L    G+    + +        HG     A    + A       IGVNC   P+  
Sbjct: 170 AVETLIA-SGKPVAATMAI-GPEGDLHGVPPGEAAVRLVKAGAS---IIGVNCHFDPTIS 224

Query: 242 STLVRCIKQSHPTVQTIV----------YPNKGVKLLDG 270
              V+ +K+     Q              P+   +    
Sbjct: 225 LKTVKLMKEGLEAAQLKAHLMSQPLAYHTPDANKQGFID 263
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Length = 406 Back     alignment and structure
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Length = 566 Back     alignment and structure
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Length = 566 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query581
1lt8_A406 Betaine-homocysteine methyltransferase; homocystei 100.0
1lt8_A406 Betaine-homocysteine methyltransferase; homocystei 100.0
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 100.0
1q7z_A566 5-methyltetrahydrofolate S-homocysteine methyltran 100.0
2ojp_A292 DHDPS, dihydrodipicolinate synthase; dimer, lysine 93.81
3cpr_A304 Dihydrodipicolinate synthetase; (beta/alpha)8-barr 93.6
1xky_A301 Dihydrodipicolinate synthase; TIM barrel, , lysine 93.51
3fkr_A309 L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f 93.17
2ehh_A294 DHDPS, dihydrodipicolinate synthase; structural ge 93.05
1o5k_A306 DHDPS, dihydrodipicolinate synthase; TM1521, struc 93.01
2vc6_A292 MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar 92.9
2r8w_A332 AGR_C_1641P; APC7498, dihydrodipicolinate synthase 92.67
2yxg_A289 DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b 92.49
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 92.47
2v9d_A343 YAGE; dihydrodipicolinic acid synthase, N-acetyl n 92.22
3m5v_A301 DHDPS, dihydrodipicolinate synthase; TIM barrel, c 92.09
3a5f_A291 Dihydrodipicolinate synthase; TIM barrel, enzyme, 92.05
3flu_A297 DHDPS, dihydrodipicolinate synthase; TIM barrel, b 92.01
2rfg_A297 Dihydrodipicolinate synthase; beta barrel, amino-a 92.01
3na8_A315 Putative dihydrodipicolinate synthetase; lyase; HE 91.93
2wkj_A303 N-acetylneuraminate lyase; directed evolution, sia 91.9
3b4u_A294 Dihydrodipicolinate synthase; structural genomics, 91.77
1f6k_A293 N-acetylneuraminate lyase; beta barrel; 1.60A {Hae 91.6
3qze_A314 DHDPS, dihydrodipicolinate synthase; alpha beta ba 91.51
3d0c_A314 Dihydrodipicolinate synthase; lysine biosynthesis, 91.31
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 91.12
2nuw_A288 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a 91.1
3fkr_A 309 L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f 90.96
3s5o_A307 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; 90.86
3cpr_A304 Dihydrodipicolinate synthetase; (beta/alpha)8-barr 90.68
3l21_A304 DHDPS, dihydrodipicolinate synthase; DAPA, dimer, 90.63
3tak_A291 DHDPS, dihydrodipicolinate synthase; TIM barrel, l 90.62
2ojp_A292 DHDPS, dihydrodipicolinate synthase; dimer, lysine 90.38
3si9_A315 DHDPS, dihydrodipicolinate synthase; structural ge 90.31
1w3i_A293 EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m 90.29
1xky_A301 Dihydrodipicolinate synthase; TIM barrel, , lysine 90.21
3e96_A316 Dihydrodipicolinate synthase; structural genomics, 90.0
2r91_A286 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM 89.85
3vnd_A267 TSA, tryptophan synthase alpha chain; psychrophili 89.78
3qfe_A318 Putative dihydrodipicolinate synthase family PROT; 89.62
2ehh_A294 DHDPS, dihydrodipicolinate synthase; structural ge 89.59
3i4e_A439 Isocitrate lyase; structural genomics, seattle str 89.32
2qjg_A273 Putative aldolase MJ0400; beta-alpha barrel, lyase 89.24
1o5k_A306 DHDPS, dihydrodipicolinate synthase; TM1521, struc 89.19
2vc6_A292 MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar 89.12
3dz1_A313 Dihydrodipicolinate synthase; lysine biosynthesis, 89.05
3lg3_A435 Isocitrate lyase; conserved, CD, proteomics eviden 88.84
3daq_A292 DHDPS, dihydrodipicolinate synthase; lysine biosyn 88.78
3r89_A290 Orotidine 5'-phosphate decarboxylase; PSI-biology, 88.61
3eol_A433 Isocitrate lyase; seattle structural center for in 88.61
2yxg_A289 DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b 88.41
2r8w_A 332 AGR_C_1641P; APC7498, dihydrodipicolinate synthase 88.33
3nav_A271 Tryptophan synthase alpha chain; alpha subunit, st 88.31
3b4u_A294 Dihydrodipicolinate synthase; structural genomics, 88.2
2hmc_A344 AGR_L_411P, dihydrodipicolinate synthase; alpha-be 88.17
3na8_A315 Putative dihydrodipicolinate synthetase; lyase; HE 88.17
3a5f_A291 Dihydrodipicolinate synthase; TIM barrel, enzyme, 87.8
3m5v_A301 DHDPS, dihydrodipicolinate synthase; TIM barrel, c 87.72
2rfg_A297 Dihydrodipicolinate synthase; beta barrel, amino-a 87.62
3l21_A304 DHDPS, dihydrodipicolinate synthase; DAPA, dimer, 87.55
2wkj_A303 N-acetylneuraminate lyase; directed evolution, sia 87.48
3si9_A315 DHDPS, dihydrodipicolinate synthase; structural ge 87.26
3eb2_A300 Putative dihydrodipicolinate synthetase; lysine bi 87.21
3qze_A314 DHDPS, dihydrodipicolinate synthase; alpha beta ba 87.2
2v9d_A 343 YAGE; dihydrodipicolinic acid synthase, N-acetyl n 87.17
3flu_A297 DHDPS, dihydrodipicolinate synthase; TIM barrel, b 87.13
1l6s_A323 Porphobilinogen synthase; dehydratase, lyase; HET: 87.11
3d0c_A 314 Dihydrodipicolinate synthase; lysine biosynthesis, 86.94
1h7n_A342 5-aminolaevulinic acid dehydratase; lyase, aldolas 86.65
3e96_A 316 Dihydrodipicolinate synthase; structural genomics, 86.58
1f6k_A293 N-acetylneuraminate lyase; beta barrel; 1.60A {Hae 86.47
2nuw_A288 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a 86.15
3s5o_A307 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; 85.71
3dz1_A 313 Dihydrodipicolinate synthase; lysine biosynthesis, 85.57
3h5d_A311 DHDPS, dihydrodipicolinate synthase; lysine biosyn 85.54
2r91_A286 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM 85.26
1w3i_A293 EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m 85.21
3tak_A291 DHDPS, dihydrodipicolinate synthase; TIM barrel, l 85.1
1w1z_A328 Delta-aminolevulinic acid dehydratase; synthase, t 84.85
1nvm_A345 HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered 84.64
3daq_A292 DHDPS, dihydrodipicolinate synthase; lysine biosyn 84.36
2eja_A338 URO-D, UPD, uroporphyrinogen decarboxylase; dimer, 84.12
4dpp_A360 DHDPS 2, dihydrodipicolinate synthase 2, chloropla 84.03
3qfe_A 318 Putative dihydrodipicolinate synthase family PROT; 83.49
3inp_A246 D-ribulose-phosphate 3-epimerase; IDP02542, isomer 83.46
2hmc_A 344 AGR_L_411P, dihydrodipicolinate synthase; alpha-be 83.32
2e6f_A314 Dihydroorotate dehydrogenase; chagas disease, pyri 83.27
2nx9_A464 Oxaloacetate decarboxylase 2, subunit alpha; carbo 83.2
1tqj_A230 Ribulose-phosphate 3-epimerase; beta-alpha barrel 82.93
2qjg_A273 Putative aldolase MJ0400; beta-alpha barrel, lyase 82.46
1zlp_A318 PSR132, petal death protein; TIM-barrel, helix swa 82.12
3eoo_A298 Methylisocitrate lyase; seattle structural genomic 82.02
1qop_A268 Tryptophan synthase alpha chain; lyase, carbon-oxy 81.83
1to3_A304 Putative aldolase YIHT; beta-alpha barrel, structu 81.3
1jub_A311 Dihydroorotate dehydrogenase A; homodimer, alpha-b 81.21
3f4w_A211 Putative hexulose 6 phosphate synthase; humps, mal 81.15
1xg4_A295 Probable methylisocitrate lyase; 2-methylisocitrat 80.95
1jub_A311 Dihydroorotate dehydrogenase A; homodimer, alpha-b 80.56
1f8m_A429 Isocitrate lyase, ICL; alpha-beta barrel, helix-sw 80.5
4dpp_A 360 DHDPS 2, dihydrodipicolinate synthase 2, chloropla 80.34
3h5d_A 311 DHDPS, dihydrodipicolinate synthase; lysine biosyn 80.03
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Back     alignment and structure
Probab=100.00  E-value=6.7e-56  Score=470.50  Aligned_cols=274  Identities=19%  Similarity=0.249  Sum_probs=232.1

Q ss_pred             ccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHH---HHhhc---CCcccccccccCCCCCCCccc
Q psy15811        265 VKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRG---HIETA---ASIGPYGTVLRDGSEYSGHYV  338 (581)
Q Consensus       265 ~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tn---a~~~~~~~~~~~~~~~~~~~~  338 (581)
                      ++++||||||+|+++ |++.  .++|++++++++||.|+++|++|++|   ||+||   ++..++.+++           
T Consensus        22 ilIlDGgmGT~L~~~-G~~~--~~~ws~~l~l~~Pe~V~~iH~~Yl~AGAdII~TNTf~A~~~~l~~~G-----------   87 (406)
T 1lt8_A           22 IVIGDGGFVFALEKR-GYVK--AGPWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENRG-----------   87 (406)
T ss_dssp             CEECCCCHHHHHHHH-TSSC--TTTCCCTHHHHCHHHHHHHHHHHHHTTCSEEECSCTTCSSCC----------------
T ss_pred             EEEEeCccchHHHHC-CCCC--CcccchHhhccCHHHHHHHHHHHHHhCccceeccccccCHHHHHhcC-----------
Confidence            789999999999998 8864  35899999999999999999999999   99999   5666665543           


Q ss_pred             CCCC---HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy15811        339 DSMT---EADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVE  415 (581)
Q Consensus       339 ~~~~---~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~  415 (581)
                        ++   .+++.+||+.||++||+|+++.        +++|+|||||+|+++           ..+++++++++|++|++
T Consensus        88 --~~~~~~~~~~eln~~Av~LAreAa~~~--------~~~VAGsIGP~g~~l-----------~~~s~eel~~~~~eqi~  146 (406)
T 1lt8_A           88 --NYVLEKISGQEVNEAAADIARQVADEG--------DALVAGGVSQTPSYL-----------SAKSETEVKKVFLQQLE  146 (406)
T ss_dssp             ----------CHHHHHHHHHHHHHHHTTT--------TCEEEEEECCCHHHH-----------TTCHHHHHHHHHHHHHH
T ss_pred             --CccchhHHHHHHHHHHHHHHHHHHhcC--------CCEEEEEcCCccccc-----------CCCCHHHHHHHHHHHHH
Confidence              32   2457899999999999998642        479999999998644           35899999999999999


Q ss_pred             HHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECC-CCC
Q psy15811        416 ALVRAGVDYLALETIPAEKEALALVKLLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNC-VRP  494 (581)
Q Consensus       416 ~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC-~~p  494 (581)
                      .|+++|||+|++||||++.|++++++++++ .++|||+||||.++|+ ++|+++++++..+.   ..++++||||| ++|
T Consensus       147 ~L~~~GvDlll~ETi~~~~Eakaa~~a~~~-~~lPv~iS~T~~~~G~-l~G~~~~~~~~~l~---~~~~~avGvNC~~gP  221 (406)
T 1lt8_A          147 VFMKKNVDFLIAEYFEHVEEAVWAVETLIA-SGKPVAATMAIGPEGD-LHGVPPGEAAVRLV---KAGASIIGVNCHFDP  221 (406)
T ss_dssp             HHHHHTCSEEEECCCSCHHHHHHHHHHHGG-GTSCEEEEECCBTTBC-TTCCCHHHHHHHHH---TTTCSEEEEESSSCH
T ss_pred             HHhhCCCCEEEEcccCCHHHHHHHHHHHHH-hCCcEEEEEEECCCCC-cCCCcHHHHHHHhh---cCCCCEEEecCCCCH
Confidence            999999999999999999999999999997 5899999999998898 99999999999983   45689999999 599


Q ss_pred             ccchHHHHHHHhh----CCCCeEEEeeCCCCCcccccccccC------CcCHH-----HHHHHHHHHHHcCCcEEeecCC
Q psy15811        495 SHVSTLVRCIKQS----HPTVQTIVYPNKGGVWDSVHMKWLD------TEDEY-----SILHYVPQWLEEGVNIIGGCCE  559 (581)
Q Consensus       495 ~~~~~~l~~l~~~----~~~~pl~~ypNag~~~~~~~~~~~~------~~~~~-----~~~~~~~~w~~~G~~iiGGCCG  559 (581)
                      +.|.++|+.++..    +.+.|+++|||+|..|+.....|..      ..+|.     +|++++++|.+.|++|||||||
T Consensus       222 ~~~~~~l~~l~~~~~~~g~~~pl~vyPNag~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~w~~~Ga~iIGGCCG  301 (406)
T 1lt8_A          222 TISLKTVKLMKEGLEAAQLKAHLMSQPLAYHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCG  301 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCEEEEECCSBCCTTCCTTCGGGSTTTTTSCGGGBCCHHHHHHHHHHHHHHTEEEECCCTT
T ss_pred             HHHHHHHHHHHHhhhhcCCCccEEEecCCCCCCcCCcccccCCccccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            9999999999864    1258999999999877755456753      23343     5999999999999999999999


Q ss_pred             CchHHHHHHHHHHhcccCC
Q psy15811        560 VTSYEIQQMRIMIDEFNTK  578 (581)
Q Consensus       560 t~P~hI~al~~~l~~~~~~  578 (581)
                      |||+||++|++.++...++
T Consensus       302 TtPeHI~aia~~l~~~~~~  320 (406)
T 1lt8_A          302 FEPYHIRAIAEELAPERGF  320 (406)
T ss_dssp             CCHHHHHHHHHHTHHHHSC
T ss_pred             CCHHHHHHHHHHHhccCCC
Confidence            9999999999999876643
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Back     alignment and structure
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A Back     alignment and structure
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* Back     alignment and structure
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A Back     alignment and structure
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} Back     alignment and structure
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A Back     alignment and structure
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} Back     alignment and structure
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} Back     alignment and structure
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* Back     alignment and structure
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* Back     alignment and structure
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* Back     alignment and structure
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 Back     alignment and structure
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} Back     alignment and structure
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} Back     alignment and structure
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A Back     alignment and structure
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} Back     alignment and structure
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* Back     alignment and structure
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A Back     alignment and structure
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A Back     alignment and structure
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A Back     alignment and structure
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A Back     alignment and structure
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A Back     alignment and structure
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A Back     alignment and structure
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A Back     alignment and structure
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} Back     alignment and structure
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* Back     alignment and structure
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* Back     alignment and structure
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 Back     alignment and structure
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A Back     alignment and structure
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} Back     alignment and structure
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} Back     alignment and structure
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} Back     alignment and structure
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} Back     alignment and structure
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A Back     alignment and structure
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A Back     alignment and structure
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} Back     alignment and structure
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 Back     alignment and structure
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A Back     alignment and structure
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A Back     alignment and structure
>3r89_A Orotidine 5'-phosphate decarboxylase; PSI-biology, midwest center for structural genomics, MCSG, O 5-phosphate decarboxylase, lyase; 1.84A {Anaerococcus prevotii} Back     alignment and structure
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* Back     alignment and structure
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} Back     alignment and structure
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} Back     alignment and structure
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 Back     alignment and structure
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} Back     alignment and structure
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} Back     alignment and structure
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} Back     alignment and structure
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* Back     alignment and structure
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* Back     alignment and structure
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} Back     alignment and structure
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A Back     alignment and structure
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A Back     alignment and structure
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} Back     alignment and structure
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 Back     alignment and structure
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A Back     alignment and structure
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* Back     alignment and structure
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 Back     alignment and structure
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A Back     alignment and structure
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} Back     alignment and structure
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A Back     alignment and structure
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 Back     alignment and structure
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* Back     alignment and structure
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A Back     alignment and structure
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A Back     alignment and structure
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 Back     alignment and structure
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} Back     alignment and structure
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A Back     alignment and structure
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* Back     alignment and structure
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A Back     alignment and structure
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A* Back     alignment and structure
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 Back     alignment and structure
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A Back     alignment and structure
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} Back     alignment and structure
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* Back     alignment and structure
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} Back     alignment and structure
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} Back     alignment and structure
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} Back     alignment and structure
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* Back     alignment and structure
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} Back     alignment and structure
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Back     alignment and structure
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A Back     alignment and structure
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} Back     alignment and structure
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 Back     alignment and structure
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Back     alignment and structure
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 Back     alignment and structure
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Back     alignment and structure
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 Back     alignment and structure
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A Back     alignment and structure
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Back     alignment and structure
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A Back     alignment and structure
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* Back     alignment and structure
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 581
d3bofa2300 c.1.26.1 (A:1-300) Cobalamin-dependent methionine 9e-23
d3bofa2300 c.1.26.1 (A:1-300) Cobalamin-dependent methionine 3e-17
d1lt7a_361 c.1.26.1 (A:) Betaine-homocysteine S-methyltransfe 1e-19
d1lt7a_361 c.1.26.1 (A:) Betaine-homocysteine S-methyltransfe 5e-16
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 300 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Cobalamin-dependent methionine synthase MetH, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 96.6 bits (239), Expect = 9e-23
 Identities = 54/312 (17%), Positives = 96/312 (30%), Gaps = 35/312 (11%)

Query: 262 NKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRGHIETAASIG 321
           ++ V LLDG++ ++  ++      G+           P+  ++ HR +I    +   +  
Sbjct: 12  SERVLLLDGAYGTEFMKY------GYDDLPEELNIKAPDVVLKVHRSYIESGSDVILTNT 65

Query: 322 PYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIG 381
            +G   R      G                                 + +        IG
Sbjct: 66  -FGAT-RMKLRKHGLEDKLDPIVRNAVRIA----------------RRAAGEKLVFGDIG 107

Query: 382 PYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVEALVRAGVDYLALETIPAEKEALALVK 441
           P G           + + S    +     R  VE +V  GVD +  ET     E  A V 
Sbjct: 108 PTG--------ELPYPLGSTLFEEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVL 159

Query: 442 LLREFPGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCVRPSHVSTLV 501
             RE       ++    D+   S     +      +  +   I A+G+NC         +
Sbjct: 160 AAREVSRDVFLIAHMTFDEKGRSLT--GTDPANFAITFDELDIDALGINCSLGPEEILPI 217

Query: 502 RCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVT 561
                 +     +V PN G             +       ++  + E GVNI GGCC  T
Sbjct: 218 FQELSQYTDKFLVVEPNAGKPIVENGKTVYPLKPHD-FAVHIDSYYELGVNIFGGCCGTT 276

Query: 562 SYEIQQMRIMID 573
              ++  R ++ 
Sbjct: 277 PEHVKLFRKVLG 288
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 300 Back     information, alignment and structure
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 361 Back     information, alignment and structure
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 361 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query581
d3bofa2300 Cobalamin-dependent methionine synthase MetH, N-te 100.0
d3bofa2300 Cobalamin-dependent methionine synthase MetH, N-te 100.0
d1lt7a_361 Betaine-homocysteine S-methyltransferase {Human (H 100.0
d1lt7a_361 Betaine-homocysteine S-methyltransferase {Human (H 100.0
d1xkya1292 Dihydrodipicolinate synthase {Bacillus anthracis [ 93.04
d1xxxa1296 Dihydrodipicolinate synthase {Mycobacterium tuberc 91.5
d2fdsa1324 Protozoan orotidine monophosphate decarboxylase {P 90.31
d1o5ka_295 Dihydrodipicolinate synthase {Thermotoga maritima 89.94
d1l6sa_323 5-aminolaevulinate dehydratase, ALAD (porphobilino 89.83
d1xkya1292 Dihydrodipicolinate synthase {Bacillus anthracis [ 89.18
d1h7na_340 5-aminolaevulinate dehydratase, ALAD (porphobilino 88.53
d1w3ia_293 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus 88.07
d1xxxa1296 Dihydrodipicolinate synthase {Mycobacterium tuberc 87.52
d2a6na1292 Dihydrodipicolinate synthase {Escherichia coli [Ta 86.81
d1o5ka_295 Dihydrodipicolinate synthase {Thermotoga maritima 85.48
d1f74a_293 N-acetylneuraminate lyase {Haemophilus influenzae 84.86
d1gzga_329 5-aminolaevulinate dehydratase, ALAD (porphobilino 84.82
d2c1ha1319 5-aminolaevulinate dehydratase, ALAD (porphobilino 84.61
d2a6na1292 Dihydrodipicolinate synthase {Escherichia coli [Ta 84.0
d1gtea2312 Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su 80.73
d1w3ia_293 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus 80.38
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Cobalamin-dependent methionine synthase MetH, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.7e-53  Score=433.37  Aligned_cols=275  Identities=22%  Similarity=0.259  Sum_probs=237.1

Q ss_pred             CCCccccCCCchhhhccccCcccCCCCcccccccCCChHHHHHHHHHHHHH---HHhhc---CCcccccccccCCCCCCC
Q psy15811        262 NKGVKLLDGSFTSQVSRHTIKDVDGHPLWSSVYLTTEPEACVETHRDFIRG---HIETA---ASIGPYGTVLRDGSEYSG  335 (581)
Q Consensus       262 nag~~~~dG~~gt~L~~~~g~~~~g~~lws~~~~~~~Pe~v~~vh~~yl~a---iI~Tn---a~~~~~~~~~~~~~~~~~  335 (581)
                      +..++++||||||+|+++ |     .++|++++++++||.|+++|++|++|   ||+||   +++.++.+++        
T Consensus        12 ~~~i~ilDGg~GteL~~~-G-----~~~~~~~~~~~~Pe~V~~iH~~yi~AGAdiI~TnTy~a~~~~l~~~g--------   77 (300)
T d3bofa2          12 SERVLLLDGAYGTEFMKY-G-----YDDLPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMKLRKHG--------   77 (300)
T ss_dssp             HHCCEECCCCSHHHHGGG-T-----CCSCGGGHHHHCHHHHHHHHHHHHTTTCSEEECSCTTCSHHHHGGGT--------
T ss_pred             cCCeEEEECHHHHHHHHC-C-----CCCCChHHhhcCHHHHHHHHHHHHHhCCCEEeeCceeceeChhhcCC--------
Confidence            335788999999999998 5     35799999999999999999999999   99999   6666676653        


Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCceEEeccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy15811        336 HYVDSMTEADLIAWHRPNVEALVRAGVDYLALIKPSISSQTAASIGPYGTVLRDGSEYSGHYVDSMTEADLIAWHRPNVE  415 (581)
Q Consensus       336 ~~~~~~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~v~VagsiGP~g~~~~~g~eY~g~y~~~~~~~~~~~~~~~~~~  415 (581)
                           + .++..+++++||++|++|+.+          ..|+||+||+|.++.+        ....+.+++.++|++|++
T Consensus        78 -----~-~~~~~~~~~~Av~la~~a~~~----------~~~~g~i~~~g~~~~~--------~~~~~~~~~~~~~~~~~~  133 (300)
T d3bofa2          78 -----L-EDKLDPIVRNAVRIARRAAGE----------KLVFGDIGPTGELPYP--------LGSTLFEEFYENFRETVE  133 (300)
T ss_dssp             -----C-GGGHHHHHHHHHHHHHHHHTT----------SEEEEEECCCSCCBTT--------TSSBCHHHHHHHHHHHHH
T ss_pred             -----c-hHHHHHHHHHHHHHHHHHhhh----------ccccceEeccccccCc--------cccccHHHHHHHHHHHHH
Confidence                 4 667889999999999999753          5799999999875532        135789999999999999


Q ss_pred             HHHhCCCCEEEecccCCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCcCCCCCcHHHHHHHHHhhCCCCceEEEECCC-C
Q psy15811        416 ALVRAGVDYLALETIPAEKEALALVKLLREF-PGQKAWLSFSCKDDTHTSHGELISSAVTSCLLANPDQIQAIGVNCV-R  493 (581)
Q Consensus       416 ~l~~~gvD~i~~ET~p~~~Ea~a~~~~~~~~-~~~pv~iSft~~~~~~l~~G~~~~~~~~~l~~~~~~~~~~iGiNC~-~  493 (581)
                      .|.++|||+|+|||||++.|++++++++++. ...++++||++++++++.+|+++.+++..+   ...+++++|+||+ +
T Consensus       134 ~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~~~~~s~~~~~~g~~~~G~~~~~~~~~~---~~~~~~~~~inc~~~  210 (300)
T d3bofa2         134 IMVEEGVDGIIFETFSDILELKAAVLAAREVSRDVFLIAHMTFDEKGRSLTGTDPANFAITF---DELDIDALGINCSLG  210 (300)
T ss_dssp             HHHHTTCSEEEEEEECCHHHHHHHHHHHHHHCSSSCEEEEECCCTTSCCTTCCCHHHHHHHH---HTSSCSEEEEESSSC
T ss_pred             HHHhcCcceeeeeeeecHHHHHHHHHhHHhhccccceEEEEEecCCCCcccccchhHHHhhh---cccccchHhhccccc
Confidence            9999999999999999999999999999974 234566677777889999999999999887   3557899999995 7


Q ss_pred             CccchHHHHHHHhhCCCCeEEEeeCCCCCcccccccccCCcCHHHHHHHHHHHHHcCCcEEeecCCCchHHHHHHHHHHh
Q psy15811        494 PSHVSTLVRCIKQSHPTVQTIVYPNKGGVWDSVHMKWLDTEDEYSILHYVPQWLEEGVNIIGGCCEVTSYEIQQMRIMID  573 (581)
Q Consensus       494 p~~~~~~l~~l~~~~~~~pl~~ypNag~~~~~~~~~~~~~~~~~~~~~~~~~w~~~G~~iiGGCCGt~P~hI~al~~~l~  573 (581)
                      |..+..+++.+.... +.|+++|||+|.++....+.| +..+|++|++++++|+++|++||||||||||+||++|+++|+
T Consensus       211 ~~~~~~~~~~~~~~~-~~~~~vypN~g~~~~~~~~~~-~~~~p~~f~~~~~~w~~~Ga~iIGGCCgt~P~hI~~l~~~l~  288 (300)
T d3bofa2         211 PEEILPIFQELSQYT-DKFLVVEPNAGKPIVENGKTV-YPLKPHDFAVHIDSYYELGVNIFGGCCGTTPEHVKLFRKVLG  288 (300)
T ss_dssp             HHHHHHHHHHHHHTC-CSEEEEECCSSSCEEETTEEE-CCCCHHHHHTTHHHHHHTTCSEECCCTTCCHHHHHHHHHHHC
T ss_pred             ccchhhhhhhhhccc-cccccccCCCCCCEeCCCccc-CCCCHHHHHHHHHHHHHCCCCEEEEcCCCCHHHHHHHHHHHh
Confidence            888888888888876 799999999998876653333 456799999999999999999999999999999999999999


Q ss_pred             cccCCC
Q psy15811        574 EFNTKK  579 (581)
Q Consensus       574 ~~~~~~  579 (581)
                      +++|+.
T Consensus       289 ~~~p~~  294 (300)
T d3bofa2         289 NRKPLQ  294 (300)
T ss_dssp             SCCCCC
T ss_pred             CCCCCC
Confidence            988864
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate decarboxylase {Plasmodium berghei [TaxId: 5821]} Back     information, alignment and structure
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Prosthecochloris vibrioformis [TaxId: 1098]} Back     information, alignment and structure
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure