Psyllid ID: psy15834

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MTQRSKVVELYKTVSMSLPDGDYQLGFPMSDMKTTAINQFLHNKILNFIVMTQQGLWVNSFNSCNLPSTACCTILSTGASMVGKHWILGLLRYWENPTMLSTKVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKYRTLKQRLVLIILM
Secondary Structure (PSIPRED)
ccccHHHHEEEEHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccHHHHHcccccHccccEEEEEEEcccccccHcHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MTQRSKVVELYKTVsmslpdgdyqlgfpmsdmkTTAINQFLHNKILNFIVMTQQGLwvnsfnscnlpstaccTILSTGASMVGKHWILGLLrywenptmLSTKVFLHlgkdypkgFDYFRLRLKNAFmknaqvqdpekiDQMIKHGEFVVKEIQALYMLKKYRTLKQRLVLIILM
Flexible Loop (DISEMBL)
MTQRSKVVELYKtvsmslpdgdYQLGFPMSDMKTTAINQFLHNKILNFIVMTQQGLWVNSFNSCNLPSTACCTILSTGASMVGKHWILGLLRYWENPTMLSTKVFLHLGKDYPKGFDYFRLRLKNAFMknaqvqdpekiDQMIKHGEFVVKEIQALymlkkyrtlkqrlVLIILM
Low Complexity Region (SEG)
MTQRSKVVELYKTVSMSLPDGDYQLGFPMSDMKTTAINQFLHNKILNFIVMTQQGLWVNSFNSCNLPSTACCTILSTGASMVGKHWILGLLRYWENPTMLSTKVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKYRTLKQRLVLIILM
Disordered region (IsUnstruct)
********ELYKTVSMSLPDGDYQLGFPMSDMKTTAINQFLHNKILNFIVMTQQGLWVNSFNSCNLPSTACCTILSTGASMVGKHWILGLLRYWENPTMLSTKVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKYRTLKQRLVLIIL*
Disordered Region (DISOPRED)
*****KV**LYKTVSMSLPDGDYQLGFPMSDMKTTAINQFLHNKILNFIVMTQQGLWVNSFNSCNLPSTACCTILSTGASMVGKHWILGLLRYWENPTMLSTKVFLHLGKDYPKGFDYFRLRLKNAF***********IDQMIKHGEFVVKEIQALYMLKKYRTLKQRLVLIILM
Disordered Region (DISEMBL)
********ELYKTVSMSLPDGDYQLGFPMSDMKTTAINQFLHNKILNFIVMTQQGLWVNSFNSCNLPSTACCTILSTGASMVGKHWILGLLRYWENPTMLSTKVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKYRTLKQRLVLIILM
Disordered Region (DISPRO)
****SKVVELYKTVSMSLPDGDYQLGFPMSDMKTTAINQFLHNKILNFIVMTQQGLWVNSFNSCNLPSTACCTILSTGASMVGKHWILGLLRYWENPTMLSTKVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKYRTLKQRLVLIILM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTQRSKVVELYKTVSMSLPDGDYQLGFPMSDMKTTAINQFLHNKILNFIVMTQQGLWVNSFNSCNLPSTACCTILSTGASMVGKHWILGLLRYWENPTMLSTKVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKYRTLKQRLVLIILM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q91V16	86	LYR motif-containing prot	yes	N/A	0.377	0.767	0.636	8e-20
B5FXA0	86	LYR motif-containing prot	yes	N/A	0.377	0.767	0.621	2e-18
A3KNJ8	84	LYR motif-containing prot	yes	N/A	0.377	0.785	0.621	3e-18
Q0VCR0	88	LYR motif-containing prot	yes	N/A	0.342	0.681	0.633	7e-18
Q6IPR1	88	LYR motif-containing prot	yes	N/A	0.342	0.681	0.633	2e-17
Q503U1	85	LYR motif-containing prot	no	N/A	0.377	0.776	0.606	2e-17
B5XCZ6	92	LYR motif-containing prot	N/A	N/A	0.377	0.717	0.575	2e-16
Q54PT6	157	LYR motif-containing prot	yes	N/A	0.371	0.414	0.384	1e-05

>sp|Q91V16|LYRM5_MOUSE LYR motif-containing protein 5 OS=Mus musculus GN=Lyrm5 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 54/66 (81%)

Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
           K  L+LG+DYPKG DYF+ RLKN F+KN  V+DPEKI ++I  GEFV+KE++ALY L+KY
Sbjct: 14  KNLLYLGRDYPKGADYFKRRLKNVFLKNKDVEDPEKIKELIARGEFVMKELEALYFLRKY 73

Query: 163 RTLKQR 168
           R +KQR
Sbjct: 74  RAMKQR 79

Mus musculus (taxid: 10090)

>sp|B5FXA0|LYRM5_TAEGU LYR motif-containing protein 5 OS=Taeniopygia guttata GN=LYRM5 PE=3 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 52/66 (78%)

Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
           K  L+LG++YPKG DYFR RLK AF+KN    DPEKI Q+I  GEFV+KE++ALY L+KY
Sbjct: 14  KNLLYLGREYPKGADYFRRRLKAAFLKNKDETDPEKIKQLIARGEFVIKELEALYFLRKY 73

Query: 163 RTLKQR 168
           R +K+R
Sbjct: 74  RAMKKR 79

Taeniopygia guttata (taxid: 59729)

>sp|A3KNJ8|LYM5B_DANRE LYR motif-containing protein 5B OS=Danio rerio GN=lyrm5b PE=3 SV=1

 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 52/66 (78%)

Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
           K  L LG++YPKG DYFR RL+ AF KN  ++DP+KI Q+I  GEFVVKE++ALY L+KY
Sbjct: 14  KALLFLGREYPKGADYFRERLRAAFAKNKDMRDPDKIKQLISRGEFVVKELEALYYLRKY 73

Query: 163 RTLKQR 168
           R LK+R
Sbjct: 74  RALKKR 79

Danio rerio (taxid: 7955)

>sp|Q0VCR0|LYRM5_BOVIN LYR motif-containing protein 5 OS=Bos taurus GN=LYRM5 PE=3 SV=1

 Score = 90.1 bits (222), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 51/60 (85%)

Query: 109 GKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKYRTLKQR 168
           G+DYPKG DYF+ RLKN F+KN  V+DPEKI ++I+ G+FV+KE++ALY L+KYR +KQR
Sbjct: 20  GRDYPKGADYFKRRLKNVFLKNKDVKDPEKIKELIERGKFVMKELEALYFLRKYRAMKQR 79

Bos taurus (taxid: 9913)

>sp|Q6IPR1|LYRM5_HUMAN LYR motif-containing protein 5 OS=Homo sapiens GN=LYRM5 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 50/60 (83%)

Query: 109 GKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKYRTLKQR 168
           G+DYPKG DYF+ RLKN F+KN  V++PEKI ++I  GEFV+KE++ALY L+KYR +KQR
Sbjct: 20  GRDYPKGADYFKKRLKNIFLKNKDVKNPEKIKELIAQGEFVMKELEALYFLRKYRAMKQR 79

Homo sapiens (taxid: 9606)

>sp|Q503U1|LYM5A_DANRE LYR motif-containing protein 5A OS=Danio rerio GN=lyrm5a PE=3 SV=1

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 52/66 (78%)

Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
           K  L+LG++YPKG  YFR RLK AFMKN  V DPEKI ++I  G+FV+KE++ALY L+KY
Sbjct: 14  KNLLYLGREYPKGTAYFRERLKTAFMKNKDVTDPEKIQKLIDRGDFVIKELEALYYLRKY 73

Query: 163 RTLKQR 168
           R +K+R
Sbjct: 74  RAMKKR 79

Danio rerio (taxid: 7955)

>sp|B5XCZ6|LYRM5_SALSA LYR motif-containing protein 5 OS=Salmo salar GN=lyrm5 PE=3 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 51/66 (77%)

Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
           K  L LG++YPKG DYF  RLK AFMKN  V DP++I +++  GEFV+KE++ALY L+KY
Sbjct: 14  KNLLFLGREYPKGADYFGERLKRAFMKNKDVTDPKEIKKLVDRGEFVIKELEALYYLRKY 73

Query: 163 RTLKQR 168
           R +K+R
Sbjct: 74  RAMKKR 79

Salmo salar (taxid: 8030)

>sp|Q54PT6|LYRM5_DICDI LYR motif-containing protein 5 OS=Dictyostelium discoideum GN=lyrm5 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
           K  ++LG+    G DY R + K  F+ NA + D  KI++ I+  ++V+KEI+A+    KY
Sbjct: 69  KQLMYLGRVGFLGVDYIRDKAKPQFISNANLTDNNKINECIERTKYVIKEIEAMNRFHKY 128

Query: 163 RTLKQ 167
           R LK+
Sbjct: 129 RNLKK 133

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
241671147	134	growth hormone-inducible soluble protein	0.377	0.492	0.636	2e-19
196011425	68	hypothetical protein TRIADDRAFT_29914 [T	0.36	0.926	0.698	5e-19
193700141	85	PREDICTED: LYR motif-containing protein	0.377	0.776	0.636	9e-19
332022678	81	LYR motif-containing protein 5 [Acromyrm	0.377	0.814	0.651	1e-18
307180250	80	LYR motif-containing protein 5 [Camponot	0.377	0.825	0.636	2e-18
427796577	99	Putative growth hormone-inducible solubl	0.377	0.666	0.621	2e-18
427795165	89	Putative growth hormone-inducible solubl	0.377	0.741	0.621	2e-18
19526856	86	LYR motif-containing protein 5 [Mus musc	0.377	0.767	0.636	4e-18
345321633	90	PREDICTED: LYR motif-containing protein	0.377	0.733	0.621	4e-18
354473268	88	PREDICTED: LYR motif-containing protein	0.377	0.75	0.636	5e-18

>gi|241671147|ref|XP_002400004.1| growth hormone-inducible soluble protein, putative [Ixodes scapularis] gi|215506242|gb|EEC15736.1| growth hormone-inducible soluble protein, putative [Ixodes scapularis]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
           K  LHLG+DYPKG+DYFR RLK AFMKN +V DPE++  ++  G++++KE++ALYMLKKY
Sbjct: 64  KNLLHLGRDYPKGYDYFRTRLKAAFMKNREVTDPEQLSVLLARGQYIIKELEALYMLKKY 123

Query: 163 RTLKQR 168
           RTLK+R
Sbjct: 124 RTLKKR 129

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|196011425|ref|XP_002115576.1| hypothetical protein TRIADDRAFT_29914 [Trichoplax adhaerens] gi|190581864|gb|EDV21939.1| hypothetical protein TRIADDRAFT_29914 [Trichoplax adhaerens]

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 55/63 (87%)

Query: 106 LHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKYRTL 165
           L+LG+DYP G+DYFR RL+ AFMKN +V+DPE I +MI  G+FV+KEI+ALYMLKKYRTL
Sbjct: 2   LYLGRDYPAGYDYFRERLRRAFMKNREVKDPETIHKMIDRGKFVIKEIEALYMLKKYRTL 61

Query: 166 KQR 168
           K+R
Sbjct: 62  KRR 64

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|193700141|ref|XP_001945576.1| PREDICTED: LYR motif-containing protein 5-like [Acyrthosiphon pisum]

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 55/66 (83%)

Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
           K  L++G+DYP+G+D+FR RLK AF +N+ + DPE+I  ++K GEFVVKEI+ALYMLKKY
Sbjct: 13  KTLLYMGRDYPQGYDFFRSRLKKAFQRNSDISDPEQIKMLVKRGEFVVKEIEALYMLKKY 72

Query: 163 RTLKQR 168
           RTLK R
Sbjct: 73  RTLKDR 78

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022678|gb|EGI62959.1| LYR motif-containing protein 5 [Acromyrmex echinatior]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 54/66 (81%)

Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
           K  L++G+DYPKG+ YFR +LK AF KN    DPEKID+MI HG FV+KE++ALYML+KY
Sbjct: 12  KTLLYMGRDYPKGYQYFRTKLKRAFDKNKTETDPEKIDKMINHGNFVIKELEALYMLRKY 71

Query: 163 RTLKQR 168
           RTLK+R
Sbjct: 72  RTLKRR 77

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180250|gb|EFN68283.1| LYR motif-containing protein 5 [Camponotus floridanus]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 55/66 (83%)

Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
           K  L++G+DYPKG++YFR +L+ AF KN    DPEKID+MI HG FV+KE++ALYML+KY
Sbjct: 12  KTLLYMGRDYPKGYEYFRTKLRRAFDKNKTETDPEKIDKMIGHGNFVIKELEALYMLRKY 71

Query: 163 RTLKQR 168
           RTLK+R
Sbjct: 72  RTLKRR 77

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427796577|gb|JAA63740.1| Putative growth hormone-inducible soluble protein, partial [Rhipicephalus pulchellus]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 56/66 (84%)

Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
           K  LHLG+DYPKG+DYFR RLK AF+KN  V+DPE++  ++  G++++KE++ALYMLKKY
Sbjct: 28  KNLLHLGRDYPKGYDYFRSRLKAAFLKNRDVKDPEQLTMLLARGQYIIKELEALYMLKKY 87

Query: 163 RTLKQR 168
           RTLK+R
Sbjct: 88  RTLKKR 93

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427795165|gb|JAA63034.1| Putative growth hormone-inducible soluble protein, partial [Rhipicephalus pulchellus]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 56/66 (84%)

Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
           K  LHLG+DYPKG+DYFR RLK AF+KN  V+DPE++  ++  G++++KE++ALYMLKKY
Sbjct: 18  KNLLHLGRDYPKGYDYFRSRLKAAFLKNRDVKDPEQLTMLLARGQYIIKELEALYMLKKY 77

Query: 163 RTLKQR 168
           RTLK+R
Sbjct: 78  RTLKKR 83

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19526856|ref|NP_598449.1| LYR motif-containing protein 5 [Mus musculus] gi|254939532|ref|NP_001157100.1| LYR motif-containing protein 5 [Mus musculus] gi|81902257|sp|Q91V16.1|LYRM5_MOUSE RecName: Full=LYR motif-containing protein 5; AltName: Full=Growth hormone-inducible soluble protein gi|15788450|gb|AAL07804.1|AF412298_1 growth hormone-inducible soluble protein [Mus musculus] gi|15788452|gb|AAL07805.1|AF412299_1 growth hormone-inducible soluble protein [Mus musculus] gi|15788454|gb|AAL07806.1|AF412300_1 growth hormone-inducible soluble protein [Mus musculus] gi|26381366|dbj|BAC25464.1| unnamed protein product [Mus musculus]

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 54/66 (81%)

Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
           K  L+LG+DYPKG DYF+ RLKN F+KN  V+DPEKI ++I  GEFV+KE++ALY L+KY
Sbjct: 14  KNLLYLGRDYPKGADYFKRRLKNVFLKNKDVEDPEKIKELIARGEFVMKELEALYFLRKY 73

Query: 163 RTLKQR 168
           R +KQR
Sbjct: 74  RAMKQR 79

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345321633|ref|XP_001508256.2| PREDICTED: LYR motif-containing protein 5-like [Ornithorhynchus anatinus]

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 55/66 (83%)

Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
           K  L+LG+DYPKG DYFR RLK+AF+KN  V+DPEKI +++  GEFV+KE++ALY L+KY
Sbjct: 16  KNLLYLGRDYPKGADYFRTRLKSAFLKNRDVRDPEKIKELVARGEFVIKELEALYFLRKY 75

Query: 163 RTLKQR 168
           R +K+R
Sbjct: 76  RAMKRR 81

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354473268|ref|XP_003498858.1| PREDICTED: LYR motif-containing protein 5-like [Cricetulus griseus]

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 54/66 (81%)

Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
           K  L+LG+DYPKG DYF+ RLKN F+KN  V+DPEKI ++I  GEFV+KE++ALY L+KY
Sbjct: 16  KNLLYLGRDYPKGADYFKRRLKNVFLKNKDVKDPEKIKELIARGEFVMKELEALYFLRKY 75

Query: 163 RTLKQR 168
           R +KQR
Sbjct: 76  RAMKQR 81

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
MGI|MGI:1914886	86	Lyrm5 "LYR motif containing 5"	0.377	0.767	0.636	7.2e-20
RGD|2320673	86	Lyrm5 "LYR motif containing 5"	0.377	0.767	0.636	9.2e-20
UNIPROTKB|Q0VCR0	88	LYRM5 "LYR motif-containing pr	0.377	0.75	0.621	1.5e-19
UNIPROTKB|E1BTS3	86	LYRM5 "Uncharacterized protein	0.377	0.767	0.636	2.5e-19
UNIPROTKB|F1SFJ7	90	LYRM5 "Uncharacterized protein	0.377	0.733	0.621	2.5e-19
UNIPROTKB|J3KPI7	90	LYRM5 "LYR motif-containing pr	0.377	0.733	0.621	4e-19
ZFIN|ZDB-GENE-070424-20	84	lyrm5b "LYR motif containing 5	0.377	0.785	0.621	2.8e-18
DICTYBASE|DDB_G0284341	157	lyrm5 "LYR motif-containing pr	0.371	0.414	0.384	1.4e-07

MGI|MGI:1914886 Lyrm5 "LYR motif containing 5" [Mus musculus (taxid:10090)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 42/66 (63%), Positives = 54/66 (81%)

Query:   103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
             K  L+LG+DYPKG DYF+ RLKN F+KN  V+DPEKI ++I  GEFV+KE++ALY L+KY
Sbjct:    14 KNLLYLGRDYPKGADYFKRRLKNVFLKNKDVEDPEKIKELIARGEFVMKELEALYFLRKY 73

Query:   163 RTLKQR 168
             R +KQR
Sbjct:    74 RAMKQR 79

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

RGD|2320673 Lyrm5 "LYR motif containing 5" [Rattus norvegicus (taxid:10116)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 42/66 (63%), Positives = 54/66 (81%)

Query:   103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
             K  L+LG+DYPKG DYF+ RLKN F+KN  V+DPEKI ++I  GEFV+KE++ALY L+KY
Sbjct:    14 KNLLYLGRDYPKGADYFKRRLKNVFLKNKDVKDPEKIKELIARGEFVMKELEALYFLRKY 73

Query:   163 RTLKQR 168
             R +KQR
Sbjct:    74 RAMKQR 79

GO:0005739 "mitochondrion" evidence=IEA;ISO

UNIPROTKB|Q0VCR0 LYRM5 "LYR motif-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 41/66 (62%), Positives = 55/66 (83%)

Query:   103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
             K  L+LG+DYPKG DYF+ RLKN F+KN  V+DPEKI ++I+ G+FV+KE++ALY L+KY
Sbjct:    14 KNLLYLGRDYPKGADYFKRRLKNVFLKNKDVKDPEKIKELIERGKFVMKELEALYFLRKY 73

Query:   163 RTLKQR 168
             R +KQR
Sbjct:    74 RAMKQR 79

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1BTS3 LYRM5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 42/66 (63%), Positives = 54/66 (81%)

Query:   103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
             K  L+LG++YPKG DYFR RLK AF+KN  V+DPEKI Q+I  GEFV+KE++ALY L+KY
Sbjct:    14 KNLLYLGREYPKGADYFRSRLKAAFLKNKDVKDPEKIKQLIARGEFVIKELEALYFLRKY 73

Query:   163 RTLKQR 168
             R +K+R
Sbjct:    74 RAMKKR 79

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1SFJ7 LYRM5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 41/66 (62%), Positives = 54/66 (81%)

Query:   103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
             K  L+LG+DYPKG DYF+ RLKN F+KN  V+DPEKI ++I  G+FV+KE++ALY L+KY
Sbjct:    16 KNLLYLGRDYPKGADYFKRRLKNVFLKNKDVKDPEKIKELIARGKFVMKELEALYFLRKY 75

Query:   163 RTLKQR 168
             R +KQR
Sbjct:    76 RAMKQR 81

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|J3KPI7 LYRM5 "LYR motif-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 41/66 (62%), Positives = 54/66 (81%)

Query:   103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
             K  L+LG+DYPKG DYF+ RLKN F+KN  V++PEKI ++I  GEFV+KE++ALY L+KY
Sbjct:    16 KNLLYLGRDYPKGADYFKKRLKNIFLKNKDVKNPEKIKELIAQGEFVMKELEALYFLRKY 75

Query:   163 RTLKQR 168
             R +KQR
Sbjct:    76 RAMKQR 81

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-070424-20 lyrm5b "LYR motif containing 5b" [Danio rerio (taxid:7955)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 41/66 (62%), Positives = 52/66 (78%)

Query:   103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
             K  L LG++YPKG DYFR RL+ AF KN  ++DP+KI Q+I  GEFVVKE++ALY L+KY
Sbjct:    14 KALLFLGREYPKGADYFRERLRAAFAKNKDMRDPDKIKQLISRGEFVVKELEALYYLRKY 73

Query:   163 RTLKQR 168
             R LK+R
Sbjct:    74 RALKKR 79

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0284341 lyrm5 "LYR motif-containing protein 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query:   103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
             K  ++LG+    G DY R + K  F+ NA + D  KI++ I+  ++V+KEI+A+    KY
Sbjct:    69 KQLMYLGRVGFLGVDYIRDKAKPQFISNANLTDNNKINECIERTKYVIKEIEAMNRFHKY 128

Query:   163 RTLKQ 167
             R LK+
Sbjct:   129 RNLKK 133


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      175       175   0.00078  109 3  11 22  0.48    31
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  160 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.14u 0.08s 17.22t   Elapsed:  00:00:02
  Total cpu time:  17.14u 0.08s 17.22t   Elapsed:  00:00:02
  Start:  Thu Aug 15 14:04:02 2013   End:  Thu Aug 15 14:04:04 2013

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6IPR1	LYRM5_HUMAN	No assigned EC number	0.6333	0.3428	0.6818	yes	N/A
Q0VCR0	LYRM5_BOVIN	No assigned EC number	0.6333	0.3428	0.6818	yes	N/A
Q91V16	LYRM5_MOUSE	No assigned EC number	0.6363	0.3771	0.7674	yes	N/A
A3KNJ8	LYM5B_DANRE	No assigned EC number	0.6212	0.3771	0.7857	yes	N/A
B5FXA0	LYRM5_TAEGU	No assigned EC number	0.6212	0.3771	0.7674	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	175
pfam13232	61	pfam13232, Complex1_LYR_1, Complex1_LYR-like	2e-06
pfam05347	59	pfam05347, Complex1_LYR, Complex 1 protein (LYR fa	3e-05

>gnl|CDD|221996 pfam13232, Complex1_LYR_1, Complex1_LYR-like

 Score = 42.9 bits (102), Expect = 2e-06
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 105 FLHLGKDYPKGFD--YFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLK 160
            L   + +P      Y R R+++ F KN  + DPEKI++++K G+      + L +LK
Sbjct: 10  LLRAARKFPDYNFREYIRRRIRDEFRKNKDLTDPEKIEKLLKEGK------KQLELLK 61

This is a family of proteins carrying the LYR motif of family Complex1_LYR, pfam05347, likely to be involved in Fe-S cluster biogenesis in mitochondria. Length = 61

>gnl|CDD|203236 pfam05347, Complex1_LYR, Complex 1 protein (LYR family)

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 14/36 (38%), Positives = 25/36 (69%)

Query: 117 DYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKE 152
           +YFR R+++ F KN  + DPEKI+ ++K G+  ++ 
Sbjct: 24  EYFRRRIRDEFRKNKNLTDPEKIEALLKEGKKQLEV 59

Proteins in this family have been identified as a component of the higher eukaryotic NADH complex. In Saccharomyces cerevisiae, the Isd11 protein has been shown to play a role in Fe/S cluster biogenesis in mitochondria. We have named this family LYR after a highly conserved tripeptide motif close to the N-terminus of these proteins. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
KOG3801|consensus	94		99.66
PF13232	61	Complex1_LYR_1: Complex1_LYR-like	99.57
PF05347	59	Complex1_LYR: Complex 1 protein (LYR family); Inte	99.43
PF13233	104	Complex1_LYR_2: Complex1_LYR-like	97.94
KOG3426|consensus	124		97.35
KOG4620|consensus	80		96.83
KOG3466|consensus	157		96.04
KOG4100|consensus	125		93.33
PF04716	57	ETC_C1_NDUFA5: ETC complex I subunit conserved reg	81.15

>KOG3801|consensus

Probab=99.66  E-value=2.6e-16  Score=119.47  Aligned_cols=67  Identities=24%  Similarity=0.379  Sum_probs=62.7

Q ss_pred             cchhHHHHHHHHHHHhhhcCC--CchHHHHHHHHHHHHhhcCCCCHHHHHHHHHccH---HHHHHHHHHHHh
Q psy15834         93 YWENPTMLSTKVFLHLGKDYP--KGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGE---FVVKEIQALYML  159 (175)
Q Consensus        93 wsRnqVLsLYKqLLRlGRdfP--ngReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGE---yVvKEleALY~L  159 (175)
                      .||.+|++|||.+|++|++||  |+|+||.||+|+.|++|++++||.+|++++++|+   +++|++.-++.|
T Consensus         4 ~sr~qvlsLyr~~lr~s~qfp~YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~LevikRQ~ii~~l   75 (94)
T KOG3801|consen    4 VSRRQVLSLYRNLLRESKQFPQYNYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIKRQSIIGQL   75 (94)
T ss_pred             ccHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            589999999999999999999  6999999999999999999999999999999999   888888877655

>PF13232 Complex1_LYR_1: Complex1_LYR-like

Probab=99.57  E-value=7.4e-15  Score=99.19  Aligned_cols=57  Identities=28%  Similarity=0.533  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHhhhcCC--CchHHHHHHHHHHHHhhcCCCCHHHHHHHHHccHHHHHHH
Q psy15834         97 PTMLSTKVFLHLGKDYP--KGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEI  153 (175)
Q Consensus        97 qVLsLYKqLLRlGRdfP--ngReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGEyVvKEl  153 (175)
                      +||+|||+|||.++.||  +.++||++++|+.|++|++++||++|++++++|+....++
T Consensus         2 ~vL~LYR~lLR~~~~~~~~~~r~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l   60 (61)
T PF13232_consen    2 QVLSLYRQLLREASKFPDYNFRSYFRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELELL   60 (61)
T ss_pred             hHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHc
Confidence            79999999999999999  4789999999999999999999999999999999877654

>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I

Probab=99.43  E-value=2.7e-13  Score=89.77  Aligned_cols=55  Identities=27%  Similarity=0.553  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHhhhcCCC--chHHHHHHHHHHHHhhcCCCCHHHHHHHHHccHHHH
Q psy15834         96 NPTMLSTKVFLHLGKDYPK--GFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVV  150 (175)
Q Consensus        96 nqVLsLYKqLLRlGRdfPn--gReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGEyVv  150 (175)
                      .+|++|||++||.++.||+  .+++++.++|+.|++|++++||++|+.+++.|+.-.
T Consensus         1 q~vl~LYR~lLR~~~~~~~~~~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l   57 (59)
T PF05347_consen    1 QRVLSLYRQLLRAARSFPDDSEREYIRAEIRQEFRKNRNETDPEKIEELLKKGEEEL   57 (59)
T ss_pred             ChHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence            3799999999999999996  479999999999999999999999999999998643

The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.

>PF13233 Complex1_LYR_2: Complex1_LYR-like

Probab=97.94  E-value=4.2e-05  Score=55.94  Aligned_cols=71  Identities=14%  Similarity=0.219  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhhhcCCCch---------HHHHHHH----HHHHHhhcCCCCHHHHHHHHHccHHHHHHHHHHHHhhhhHH
Q psy15834         98 TMLSTKVFLHLGKDYPKGF---------DYFRLRL----KNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKYRT  164 (175)
Q Consensus        98 VLsLYKqLLRlGRdfPngR---------eYFRRRi----R~aFRkNKnLTDPeeIkkaI~eGEyVvKEleALY~LkKYR~  164 (175)
                      |++|||++||+-+.+|...         ..+.+++    +++|+.+++..|+......+.+.+.++.-+.+   -+.|..
T Consensus         1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y~~~L~~---qr~y~e   77 (104)
T PF13233_consen    1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENYATFLKN---QREYKE   77 (104)
T ss_pred             ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            6899999999999998533         6777778    99999999999899999999999988776655   458999


Q ss_pred             HHhhhhh
Q psy15834        165 LKQRLVL  171 (175)
Q Consensus       165 LKrRYy~  171 (175)
                      |-.||-+
T Consensus        78 L~erYnp   84 (104)
T PF13233_consen   78 LLERYNP   84 (104)
T ss_pred             HHhhccc
Confidence            9999844

>KOG3426|consensus

Probab=97.35  E-value=0.00045  Score=55.21  Aligned_cols=63  Identities=22%  Similarity=0.295  Sum_probs=53.2

Q ss_pred             hhHHHHHHHHHHHhhhcCCC-------chHHHHHHHHHHHHhhcCCCCHHHHHHHHHccHHHHHHHHHHH
Q psy15834         95 ENPTMLSTKVFLHLGKDYPK-------GFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALY  157 (175)
Q Consensus        95 RnqVLsLYKqLLRlGRdfPn-------gReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGEyVvKEleALY  157 (175)
                      |..|+.|||..-|.--.+-.       ..+-+|.++|+.|++|.++|||.-|.-++-+|..-.||+.-..
T Consensus        23 Rrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R~~ir~qf~kn~hvTD~rViDlLV~kg~~elkeiv~~~   92 (124)
T KOG3426|consen   23 RRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLRDKIREQFRKNAHVTDPRVIDLLVIKGMEELKEIVDHW   92 (124)
T ss_pred             HHHHHHHHHHHHHhcChHHHhcCCcccCHHHHHHHHHHHHHhcCCcCCchhhhHHHHhhHHHHHHHHHHH
Confidence            67899999999987654331       4578999999999999999999999999999998888876543

>KOG4620|consensus

Probab=96.83  E-value=0.0034  Score=47.03  Aligned_cols=52  Identities=15%  Similarity=0.254  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhhcCC--CCHHHHHHHHHccH
Q psy15834         96 NPTMLSTKVFLHLGKDYPK-GFDYFRLRLKNAFMKNAQV--QDPEKIDQMIKHGE  147 (175)
Q Consensus        96 nqVLsLYKqLLRlGRdfPn-gReYFRRRiR~aFRkNKnL--TDPeeIkkaI~eGE  147 (175)
                      .||++|||.+||.|+.=|. ...-|..=++.+|++|+++  .|---|+.++..|+
T Consensus         9 rqVlhlYR~~lraa~~Kp~~~~~~~m~fvh~EFrk~~~lpr~Df~~IEhLlRvG~   63 (80)
T KOG4620|consen    9 RQVLHLYRDLLRAARGKPGAEARRWMAFVHAEFRKHAGLPRSDFLRIEHLLRVGR   63 (80)
T ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhcCCcHhHHHHHHHHHHHhH
Confidence            5899999999999999885 4455666799999999998  56668888888876

>KOG3466|consensus

Probab=96.04  E-value=0.011  Score=48.80  Aligned_cols=54  Identities=17%  Similarity=0.132  Sum_probs=47.4

Q ss_pred             chhHHHHHHHHHHHhhhcCCCch---HHHHHHHHHHHHhhcCCCCHHHHHHHHHccHH
Q psy15834         94 WENPTMLSTKVFLHLGKDYPKGF---DYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEF  148 (175)
Q Consensus        94 sRnqVLsLYKqLLRlGRdfPngR---eYFRRRiR~aFRkNKnLTDPeeIkkaI~eGEy  148 (175)
                      .+.+|+.|||+.||.-..|-.+|   -|+.-.+|.-|.+|++ .|-.++..+|++|+.
T Consensus        12 hkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~   68 (157)
T KOG3466|consen   12 HKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGER   68 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHH
Confidence            47899999999999999998544   5566679999999998 999999999999983

>KOG4100|consensus

Probab=93.33  E-value=0.22  Score=40.10  Aligned_cols=45  Identities=27%  Similarity=0.443  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHhhhcCCC-----chHHHHHHHHHHHHhhcCCCCHHHHHHHHHccH
Q psy15834         98 TMLSTKVFLHLGKDYPK-----GFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGE  147 (175)
Q Consensus        98 VLsLYKqLLRlGRdfPn-----gReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGE  147 (175)
                      |+-|||+.||+-|-.|.     |-+|    +|++||.+|++ +|.++.-.+.+=+
T Consensus        12 vrlLYkriLrlHr~lp~~~R~lGD~Y----VkdEFrrHk~v-np~~~~~FlteW~   61 (125)
T KOG4100|consen   12 VRLLYKRILRLHRGLPAELRALGDQY----VKDEFRRHKTV-NPLEAQGFLTEWE   61 (125)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHH----HHHHHHHhccC-ChHHHHHHHHHHH
Confidence            44599999999999995     3344    67899999999 9999887776544

>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=81.15  E-value=6.3  Score=27.40  Aligned_cols=50  Identities=20%  Similarity=0.131  Sum_probs=39.4

Q ss_pred             hhHHHHHHHHHHHhhhcCCC---chHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy15834         95 ENPTMLSTKVFLHLGKDYPK---GFDYFRLRLKNAFMKNAQVQDPEKIDQMIK  144 (175)
Q Consensus        95 RnqVLsLYKqLLRlGRdfPn---gReYFRRRiR~aFRkNKnLTDPeeIkkaI~  144 (175)
                      |.....||.+.|+.-.++|.   +|.|.-.-++.-+.--+...|.++|++.|.
T Consensus         4 r~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i~   56 (57)
T PF04716_consen    4 REALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKIG   56 (57)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHhC
Confidence            44567999999999999994   667666666666666677899999998764

6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00