Psyllid ID: psy15859

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAIETYNSEIRQVKADDIPEDFNKPKFGYYKTKPSLANEFKRAVETKVDMFDRGSCNC
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHcccccccccccEEEEHHccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHcccccHcccccEHHHHHHcccccccccccccccccccHcccHHHHHHHHHHHHcccccccEEccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHcccccccHHcccHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
MASSRLEKIGTIFTRVTGLLRagamnvnekpiwydvyrafppkveplysrpiadvpikeiiypedSIRAKLHKALgkkmpgynlleknrptvSQKIILQTLqhqkedpslsEDEALAKAIETYNSEIRqvkaddipedfnkpkfgyyktkpslANEFKRAVETKvdmfdrgscnc
Flexible Loop (DISEMBL)
massrlekigtiftrvtgllragamnvnekpIWYDVYRAFPPKVeplysrpiadvpiKEIIYPEDSIRAKLHKALGKkmpgynlleknrpTVSQKIILQTlqhqkedpslSEDEALAKAIETYNseirqvkaddipedfnkpkfgyyktkpslanEFKRAVEtkvdmfdrgscnc
Low Complexity Region (SEG)
MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAIETYNSEIRQVKADDIPEDFNKPKFGYYKTKPSLANEFKRAVETKVDMFDRGSCNC
Disordered region (IsUnstruct)
*******KIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEIIYPEDSIRAKLHKALGKKMPGYNLLE********KIIL********************************************KFGYYK***************************
Disordered Region (DISOPRED)
***SRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEIIYPEDSIRAKLHKALGKKMP***L**KNRPTVSQKIILQTLQ*************LAKAIETY*********************************************DRGSCN*
Disordered Region (DISEMBL)
MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTL***********DEALAKAIETYNSEIRQVKADDIPEDFNKPKFGYYKTKPSLANEFKRAVETKVDM********
Disordered Region (DISPRO)
****RLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAIETYNSEIRQV*************************************FDRG*C*C
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAIETYNSEIRQVKADDIPEDFNKPKFGYYKTKPSLANEFKRAVETKVDMFDRGSCNC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q2NL27	190	28S ribosomal protein S23	yes	N/A	0.588	0.542	0.427	1e-18
Q9Y3D9	190	28S ribosomal protein S23	yes	N/A	0.588	0.542	0.418	4e-18
Q8VE22	177	28S ribosomal protein S23	yes	N/A	0.6	0.593	0.393	9e-18
P34748	133	Uncharacterized protein Z	yes	N/A	0.64	0.842	0.389	2e-15

>sp|Q2NL27|RT23_BOVIN 28S ribosomal protein S23, mitochondrial OS=Bos taurus GN=MRPS23 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 7/110 (6%)

Query: 1   MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRP-----IADV 55
           MA SRLE +G+IFTR   L+RAG +   EKP+W+DVY AFPP  EP++ RP      A  
Sbjct: 1   MAGSRLETVGSIFTRTRDLIRAGVLK--EKPLWFDVYNAFPPLREPVFRRPRLRYGKAKS 58

Query: 56  PIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQK 105
           P ++I Y ED IRAK + A G     ++L   N  +  Q+ + + ++ QK
Sbjct: 59  PTQDIYYHEDQIRAKFYAAYGSGPKAFDLFNPNFKSTCQRFVEKYIELQK 108

Bos taurus (taxid: 9913)

>sp|Q9Y3D9|RT23_HUMAN 28S ribosomal protein S23, mitochondrial OS=Homo sapiens GN=MRPS23 PE=1 SV=2

 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 65/110 (59%), Gaps = 7/110 (6%)

Query: 1   MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPI-----ADV 55
           MA SRLE +G+IF+R   L+RAG +   EKP+W+DVY AFPP  EP++ RP      A  
Sbjct: 1   MAGSRLETVGSIFSRTRDLVRAGVLK--EKPLWFDVYDAFPPLREPVFQRPRVRYGKAKA 58

Query: 56  PIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQK 105
           PI++I Y ED IRAK +   G     ++L   N  +  Q+ + +  + QK
Sbjct: 59  PIQDIWYHEDRIRAKFYSVYGSGQRAFDLFNPNFKSTCQRFVEKYTELQK 108

Homo sapiens (taxid: 9606)

>sp|Q8VE22|RT23_MOUSE 28S ribosomal protein S23, mitochondrial OS=Mus musculus GN=Mrps23 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 12/117 (10%)

Query: 1   MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPI-----ADV 55
           MA SRLE +G++F+R   L+RAG +   EKP+WYD+Y+AFPP  EP++ RP      A  
Sbjct: 1   MAGSRLETVGSVFSRTRDLMRAGVLK--EKPLWYDIYKAFPPLREPVFRRPRLRYGKAKA 58

Query: 56  PIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKII-----LQTLQHQKED 107
            I++I Y ED IRAK     G     ++L   N  +  Q+ +     LQ L    E+
Sbjct: 59  DIQDIFYQEDQIRAKFFATYGSGQKAFDLFNPNFKSTCQRFVEKYTELQNLGETDEE 115

Mus musculus (taxid: 10090)

>sp|P34748|YO67_CAEEL Uncharacterized protein ZK1098.7 OS=Caenorhabditis elegans GN=ZK1098.7 PE=4 SV=1

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 73/118 (61%), Gaps = 6/118 (5%)

Query: 1   MAS--SRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIA--DVP 56
           MAS  +R E+ G IF+RVTGL+RAG +N  ++P+WYDVY + PP   P ++  +A  D P
Sbjct: 1   MASFITRAERSGNIFSRVTGLIRAGQLNWADRPLWYDVYVSSPPLTPPDWNVKLAKYDEP 60

Query: 57  IKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDE 114
           I+ I Y ED +RAK +K   +   G   ++ +R +VSQ+ I +    + E+   ++D+
Sbjct: 61  IRSIFYEEDVLRAKFYKTY-RSTAGIQ-VDSSRTSVSQQFINEYKLVKSENAEATDDQ 116

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
347968778	164	AGAP002893-PA [Anopheles gambiae str. PE	0.765	0.817	0.478	4e-28
24584213	189	mitochondrial ribosomal protein S23 [Dro	0.897	0.830	0.440	6e-28
195397714	190	GJ18085 [Drosophila virilis] gi|19414112	0.748	0.689	0.481	7e-28
194761108	189	GF15617 [Drosophila ananassae] gi|190616	0.92	0.851	0.436	2e-27
195031530	185	GH10614 [Drosophila grimshawi] gi|193904	0.885	0.837	0.412	3e-27
194860372	189	GG10178 [Drosophila erecta] gi|190661435	0.897	0.830	0.434	4e-27
195579090	189	GD22035 [Drosophila simulans] gi|1941914	0.897	0.830	0.440	4e-27
195472725	189	GE11383 [Drosophila yakuba] gi|194174751	0.897	0.830	0.434	5e-27
195338305	189	GM15060 [Drosophila sechellia] gi|194129	0.897	0.830	0.434	9e-27
332375652	167	unknown [Dendroctonus ponderosae]	0.771	0.808	0.464	3e-26

>gi|347968778|ref|XP_312017.5| AGAP002893-PA [Anopheles gambiae str. PEST] gi|333467846|gb|EAA08013.5| AGAP002893-PA [Anopheles gambiae str. PEST]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 91/140 (65%), Gaps = 6/140 (4%)

Query: 1   MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEI 60
           MA+SRLEKIGTI TR  GLL++GAM  +E+P+WYDV  AFPP  EP Y RP   VP+++I
Sbjct: 1   MANSRLEKIGTIITRTQGLLKSGAMKFDERPLWYDVVTAFPPHEEPRYDRPAPRVPVRQI 60

Query: 61  IYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKII--LQTLQHQKEDPSLSEDEALAK 118
            Y ED++RAK HK+ GK     NLL+ N  T +Q+ I   Q+L  Q    +L E++  A 
Sbjct: 61  FYQEDTVRAKFHKS-GKATFAVNLLDHNNRTPTQQFIELYQSLSTQG---ALDEEQVFAT 116

Query: 119 AIETYNSEIRQVKADDIPED 138
           AI+ +  ++RQ + D  P D
Sbjct: 117 AIDLHEDKMRQQRLDRRPAD 136

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24584213|ref|NP_723847.1| mitochondrial ribosomal protein S23 [Drosophila melanogaster] gi|22946439|gb|AAN10854.1| mitochondrial ribosomal protein S23 [Drosophila melanogaster]

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 97/161 (60%), Gaps = 4/161 (2%)

Query: 1   MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEI 60
           MA SRLEKIGTIFTRV GLLR GAM   +KPIWYDVY AFPPK+EP + RP  ++P+++I
Sbjct: 1   MAQSRLEKIGTIFTRVQGLLRGGAMKTEDKPIWYDVYAAFPPKLEPRFDRPAPEIPVRQI 60

Query: 61  IYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAI 120
            Y ED +RAKLHK   K     +L +  R T SQ+ + Q  Q  K   +L E      A+
Sbjct: 61  FYAEDVVRAKLHKE-NKPQETISLFDHRRSTQSQQFV-QIYQDLKGQGALDEQRIYETAL 118

Query: 121 ETYNSEIRQVKADDIPEDFNKPKFGYYKTKPSLANEFKRAV 161
           +    + +Q + +  PE+    +    ++K  L ++FK AV
Sbjct: 119 DLLAEQRQQARLETTPEECLPEQDS--ESKSQLLSDFKEAV 157

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195397714|ref|XP_002057473.1| GJ18085 [Drosophila virilis] gi|194141127|gb|EDW57546.1| GJ18085 [Drosophila virilis]

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 64/133 (48%), Positives = 84/133 (63%), Gaps = 2/133 (1%)

Query: 1   MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEI 60
           MA SRLEKIGTIFTRV GLLR GAM   +KPIWYDVY AFPPK+EP + RP +D+P++ I
Sbjct: 1   MAQSRLEKIGTIFTRVQGLLRGGAMKAEDKPIWYDVYAAFPPKLEPRFDRPASDIPVRNI 60

Query: 61  IYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAI 120
            Y ED +RAKLHK   K     +L +  R T SQ+  LQ  +  K   +L +      A+
Sbjct: 61  FYAEDVVRAKLHKQ-NKPHETISLFDNKRATHSQQ-FLQIYEQLKSQGALDDQRIYETAL 118

Query: 121 ETYNSEIRQVKAD 133
           + +  + +Q + D
Sbjct: 119 DLFAEQRKQTRTD 131

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194761108|ref|XP_001962774.1| GF15617 [Drosophila ananassae] gi|190616471|gb|EDV31995.1| GF15617 [Drosophila ananassae]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 101/165 (61%), Gaps = 4/165 (2%)

Query: 1   MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEI 60
           MA SRLEKIGTIFTRV GLLR GAM   +KPIWYDVY AFPPK EP + R   +VP+K+I
Sbjct: 1   MAQSRLEKIGTIFTRVQGLLRGGAMKAEDKPIWYDVYAAFPPKAEPRFDRVAPEVPVKKI 60

Query: 61  IYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAI 120
            Y ED +RAKLH+   K     +LL+  R + SQ+ + Q  Q+ K   +L + +    A+
Sbjct: 61  FYGEDVVRAKLHRQ-NKPQETISLLDNRRSSQSQQFV-QIYQNLKTQGALDDQKIYETAL 118

Query: 121 ETYNSEIRQVKADDIPEDFNKPKFGYYKTKPSLANEFKRAVETKV 165
           +    + +Q + +  PE+   P+    +TK  L ++FK A E++ 
Sbjct: 119 DLLAEQRQQSRLEATPEE-AAPELD-TETKTQLLSDFKEASESQA 161

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195031530|ref|XP_001988352.1| GH10614 [Drosophila grimshawi] gi|193904352|gb|EDW03219.1| GH10614 [Drosophila grimshawi]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 98/160 (61%), Gaps = 5/160 (3%)

Query: 1   MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEI 60
           MA SRLEKIGTIF+RV GLLR GAM   +KPIWYD+Y AFPPK+EP + RP  ++P++ I
Sbjct: 1   MAQSRLEKIGTIFSRVQGLLRGGAMKTEDKPIWYDIYAAFPPKLEPRFDRPAVNMPVRNI 60

Query: 61  IYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAI 120
            Y ED +RAKLHK   K     +L ++ R T SQ+ I Q  +  K   +L +      A+
Sbjct: 61  FYAEDVVRAKLHKH-NKPQETISLFDQKRATQSQQFI-QIYEQLKSQGALDDQRIYETAL 118

Query: 121 ETYNSEIRQVKADDIPEDFNKPKFGYYKTKPSLANEFKRA 160
           +    + +Q++A+ + E+  + +      K +L ++F+ A
Sbjct: 119 DLLAEQRQQLRAEPVEENLEEDQAS---GKSTLLSDFREA 155

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194860372|ref|XP_001969568.1| GG10178 [Drosophila erecta] gi|190661435|gb|EDV58627.1| GG10178 [Drosophila erecta]

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 99/161 (61%), Gaps = 4/161 (2%)

Query: 1   MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEI 60
           MA SRLEKIGTIFTRV GLLR GA+   +KPIWYDVY AFPPK+EP + RP  ++P+++I
Sbjct: 1   MAQSRLEKIGTIFTRVQGLLRGGAIKTEDKPIWYDVYAAFPPKLEPRFDRPAPEIPVRKI 60

Query: 61  IYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAI 120
            Y ED +RAKLHK   +     +L +  R T SQ+ + Q  Q  K   +L E      A+
Sbjct: 61  FYAEDVVRAKLHKE-NRPQETISLFDHKRSTQSQQFV-QIYQDLKAQGALDEQRIYETAL 118

Query: 121 ETYNSEIRQVKADDIPEDFNKPKFGYYKTKPSLANEFKRAV 161
           +    + +Q + +  PE+ + P+    ++K  L ++FK AV
Sbjct: 119 DLLAEQRQQARLEATPEE-SLPEQD-AESKSQLLSDFKEAV 157

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195579090|ref|XP_002079395.1| GD22035 [Drosophila simulans] gi|194191404|gb|EDX04980.1| GD22035 [Drosophila simulans]

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 99/161 (61%), Gaps = 4/161 (2%)

Query: 1   MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEI 60
           MA SRLEKIGTIFTRV GLLR GAM   +KPIWYDVY AFPPK+EP + RP  ++P+++I
Sbjct: 1   MAQSRLEKIGTIFTRVQGLLRGGAMKPEDKPIWYDVYAAFPPKLEPRFDRPAPEIPVRQI 60

Query: 61  IYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAI 120
            Y ED +RAKLHK   +     +L +  R T SQ+ + Q  Q  K   +L E      A+
Sbjct: 61  FYAEDVVRAKLHKE-NRPQETISLFDNRRSTQSQQFV-QIYQDLKGQGALDEQRIYETAL 118

Query: 121 ETYNSEIRQVKADDIPEDFNKPKFGYYKTKPSLANEFKRAV 161
           +    + +Q + +  PE+ + P+    ++K  L ++FK AV
Sbjct: 119 DLLAEQRQQARLEATPEE-SLPEQD-EESKSQLLSDFKEAV 157

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195472725|ref|XP_002088650.1| GE11383 [Drosophila yakuba] gi|194174751|gb|EDW88362.1| GE11383 [Drosophila yakuba]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 96/161 (59%), Gaps = 4/161 (2%)

Query: 1   MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEI 60
           MA SRLEKIGTIFTRV GLLR GAM   +KPIWYDVY AFPPK+EP + RP  ++P+++I
Sbjct: 1   MAQSRLEKIGTIFTRVQGLLRGGAMKTEDKPIWYDVYAAFPPKLEPKFDRPAPEIPVRKI 60

Query: 61  IYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAI 120
            Y ED +RAKLHK   +     +L +  R T SQ+ +    Q  K   +L E      A+
Sbjct: 61  FYAEDVVRAKLHKE-NRPQETISLFDHRRSTQSQQFV-HIYQGLKAQGALDEQRIYETAL 118

Query: 121 ETYNSEIRQVKADDIPEDFNKPKFGYYKTKPSLANEFKRAV 161
           +    + +Q + +  PE+    +    KT+  L ++FK AV
Sbjct: 119 DLLAEQRQQARLEATPEESLPEQDAESKTQ--LLSDFKEAV 157

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195338305|ref|XP_002035765.1| GM15060 [Drosophila sechellia] gi|194129645|gb|EDW51688.1| GM15060 [Drosophila sechellia]

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 99/161 (61%), Gaps = 4/161 (2%)

Query: 1   MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEI 60
           MA SRLEKIGTIFTRV GLLR GAM   +KPIW+DVY AFPPK+EP + RP  ++P+++I
Sbjct: 1   MAQSRLEKIGTIFTRVQGLLRGGAMKPEDKPIWFDVYAAFPPKLEPRFDRPAPEIPVRQI 60

Query: 61  IYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAI 120
            Y ED +RAKLHK   +     +L +  R T SQ+ + Q  Q  K   +L E      A+
Sbjct: 61  FYAEDVVRAKLHKE-NRPQETISLFDNRRSTQSQQFV-QIYQDLKGQGALDEQRIYETAL 118

Query: 121 ETYNSEIRQVKADDIPEDFNKPKFGYYKTKPSLANEFKRAV 161
           +    + +Q + +  PE+ + P+    ++K  L ++FK AV
Sbjct: 119 DLLAEQRQQARLEATPEE-SLPEQD-EESKSQLLSDFKEAV 157

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375652|gb|AEE62967.1| unknown [Dendroctonus ponderosae]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 92/140 (65%), Gaps = 5/140 (3%)

Query: 1   MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEI 60
           MA SRLEKIGTIF+R TGL+++ A+N N++PIWYD+Y  FPPK EP + RP+A++ ++ I
Sbjct: 1   MAGSRLEKIGTIFSRTTGLIQSKALNWNDRPIWYDIYAKFPPKDEPRFDRPVANIQLRNI 60

Query: 61  IYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKI--ILQTLQHQKEDPSLSEDEALAK 118
            YPED IRA  H+    K  G   LE   PT++QK   I   ++ Q  D S+SE++   +
Sbjct: 61  FYPEDKIRAIFHR--NNKQIGLVSLENRSPTLTQKFIEIYTKVREQYGDESVSEEQLYKE 118

Query: 119 AIETYNSEIRQVKADDIPED 138
           AI+  N + R  KA + PE+
Sbjct: 119 AIDIINRD-RYNKAVEEPEE 137

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
FB|FBgn0260407	189	mRpS23 "mitochondrial Ribosoma	0.897	0.830	0.440	2.3e-30
ZFIN|ZDB-GENE-040801-134	188	mrps23 "mitochondrial ribosoma	0.674	0.627	0.457	3.9e-21
UNIPROTKB|E2RKE5	190	MRPS23 "Uncharacterized protei	0.588	0.542	0.427	1.1e-18
UNIPROTKB|F1MZW1	190	MRPS23 "28S ribosomal protein	0.588	0.542	0.427	2.8e-18
UNIPROTKB|Q2NL27	190	MRPS23 "28S ribosomal protein	0.588	0.542	0.427	3.6e-18
UNIPROTKB|J3QLR8	152	MRPS23 "28S ribosomal protein	0.588	0.677	0.418	2e-17
UNIPROTKB|Q9Y3D9	190	MRPS23 "28S ribosomal protein	0.588	0.542	0.418	2e-17
MGI|MGI:1928138	177	Mrps23 "mitochondrial ribosoma	0.542	0.536	0.411	5.3e-17
UNIPROTKB|F1RSB6	189	LOC100737430 "Uncharacterized	0.588	0.544	0.390	8.6e-17
RGD|1306963	177	Mrps23 "mitochondrial ribosoma	0.662	0.655	0.377	1.1e-16

FB|FBgn0260407 mRpS23 "mitochondrial Ribosomal protein S23" [Drosophila melanogaster (taxid:7227)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 71/161 (44%), Positives = 97/161 (60%)

Query:     1 MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEI 60
             MA SRLEKIGTIFTRV GLLR GAM   +KPIWYDVY AFPPK+EP + RP  ++P+++I
Sbjct:     1 MAQSRLEKIGTIFTRVQGLLRGGAMKTEDKPIWYDVYAAFPPKLEPRFDRPAPEIPVRQI 60

Query:    61 IYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAI 120
              Y ED +RAKLHK   K     +L +  R T SQ+ + Q  Q  K   +L E      A+
Sbjct:    61 FYAEDVVRAKLHKE-NKPQETISLFDHRRSTQSQQFV-QIYQDLKGQGALDEQRIYETAL 118

Query:   121 ETYNSEIRQVKADDIPEDFNKPKFGYYKTKPSLANEFKRAV 161
             +    + +Q + +  PE+    +    ++K  L ++FK AV
Sbjct:   119 DLLAEQRQQARLETTPEECLPEQDS--ESKSQLLSDFKEAV 157

GO:0005761 "mitochondrial ribosome" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA

ZFIN|ZDB-GENE-040801-134 mrps23 "mitochondrial ribosomal protein S23" [Danio rerio (taxid:7955)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 59/129 (45%), Positives = 75/129 (58%)

Query:     1 MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRP------IAD 54
             MA SRLEK GT+FTRV  LLRAG +   EKPIWYDVY AFPPK EPLY +P       AD
Sbjct:     1 MAGSRLEKFGTVFTRVRDLLRAGVLKPEEKPIWYDVYAAFPPKKEPLYQKPRRPRVPAAD 60

Query:    55 VPIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQ-HQKED--PSLS 111
              P+ ++ Y ED IRAK  +  G     +  L  N  +  QK +++  +   + D  P L 
Sbjct:    61 -PVPQLFYKEDEIRAKFFEVYGNGPKAFEPLMPNFISSCQKFVMKYSELESRGDIKPELL 119

Query:   112 EDEALAKAI 120
              +E  AKA+
Sbjct:   120 FEET-AKAL 127

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2RKE5 MRPS23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 47/110 (42%), Positives = 68/110 (61%)

Query:     1 MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPI-----ADV 55
             MA SRLE +G+IF+R   L+RAG +   EKP+W+DVY AFPP  EP++ RP      A  
Sbjct:     1 MARSRLETVGSIFSRTRDLIRAGVLK--EKPLWFDVYDAFPPLREPVFRRPRLRYGKAKA 58

Query:    56 PIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQK 105
              I++I+YPED IRAK + A G     ++L   N  +  Q+ + + ++ QK
Sbjct:    59 AIQDILYPEDRIRAKFYSAYGSGQKAFDLFNPNFKSTCQQFVEKYIELQK 108

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1MZW1 MRPS23 "28S ribosomal protein S23, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 47/110 (42%), Positives = 66/110 (60%)

Query:     1 MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPI-----ADV 55
             MA SRLE +G+IFTR   L+RAG +   EKP+W+DVY AFPP  EP++ RP      A  
Sbjct:     1 MAGSRLETVGSIFTRTRDLIRAGVLK--EKPLWFDVYNAFPPLREPVFRRPRLRYGKAKS 58

Query:    56 PIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQK 105
             P ++I Y ED IRAK + A G     ++L   N  +  Q+ + + ++ QK
Sbjct:    59 PTQDIFYHEDQIRAKFYAAYGSGPKAFDLFNPNFKSTCQRFVEKYIELQK 108

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q2NL27 MRPS23 "28S ribosomal protein S23, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 47/110 (42%), Positives = 66/110 (60%)

Query:     1 MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPI-----ADV 55
             MA SRLE +G+IFTR   L+RAG +   EKP+W+DVY AFPP  EP++ RP      A  
Sbjct:     1 MAGSRLETVGSIFTRTRDLIRAGVLK--EKPLWFDVYNAFPPLREPVFRRPRLRYGKAKS 58

Query:    56 PIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQK 105
             P ++I Y ED IRAK + A G     ++L   N  +  Q+ + + ++ QK
Sbjct:    59 PTQDIYYHEDQIRAKFYAAYGSGPKAFDLFNPNFKSTCQRFVEKYIELQK 108

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|J3QLR8 MRPS23 "28S ribosomal protein S23, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 46/110 (41%), Positives = 65/110 (59%)

Query:     1 MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPI-----ADV 55
             MA SRLE +G+IF+R   L+RAG +   EKP+W+DVY AFPP  EP++ RP      A  
Sbjct:     1 MAGSRLETVGSIFSRTRDLVRAGVLK--EKPLWFDVYDAFPPLREPVFQRPRVRYGKAKA 58

Query:    56 PIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQK 105
             PI++I Y ED IRAK +   G     ++L   N  +  Q+ + +  + QK
Sbjct:    59 PIQDIWYHEDRIRAKFYSVYGSGQRAFDLFNPNFKSTCQRFVEKYTELQK 108

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q9Y3D9 MRPS23 "28S ribosomal protein S23, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 46/110 (41%), Positives = 65/110 (59%)

Query:     1 MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPI-----ADV 55
             MA SRLE +G+IF+R   L+RAG +   EKP+W+DVY AFPP  EP++ RP      A  
Sbjct:     1 MAGSRLETVGSIFSRTRDLVRAGVLK--EKPLWFDVYDAFPPLREPVFQRPRVRYGKAKA 58

Query:    56 PIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQK 105
             PI++I Y ED IRAK +   G     ++L   N  +  Q+ + +  + QK
Sbjct:    59 PIQDIWYHEDRIRAKFYSVYGSGQRAFDLFNPNFKSTCQRFVEKYTELQK 108

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

MGI|MGI:1928138 Mrps23 "mitochondrial ribosomal protein S23" [Mus musculus (taxid:10090)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 42/102 (41%), Positives = 60/102 (58%)

Query:     1 MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPI-----ADV 55
             MA SRLE +G++F+R   L+RAG +   EKP+WYD+Y+AFPP  EP++ RP      A  
Sbjct:     1 MAGSRLETVGSVFSRTRDLMRAGVLK--EKPLWYDIYKAFPPLREPVFRRPRLRYGKAKA 58

Query:    56 PIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKII 97
              I++I Y ED IRAK     G     ++L   N  +  Q+ +
Sbjct:    59 DIQDIFYQEDQIRAKFFATYGSGQKAFDLFNPNFKSTCQRFV 100

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1RSB6 LOC100737430 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 43/110 (39%), Positives = 65/110 (59%)

Query:     1 MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPI-----ADV 55
             MA SRLE +G+IF+R   L+RAG +   EKP+W D+Y AFPP  EP++ RP      A  
Sbjct:     1 MAGSRLETVGSIFSRTRDLIRAGVLK--EKPLWLDIYNAFPPLREPVFRRPRLRYGKAKA 58

Query:    56 PIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQK 105
              +++I Y ED IRAK + A G     ++L   N  +  Q+ + + ++ Q+
Sbjct:    59 AVQDIFYHEDRIRAKFYSAYGSGPKAFDLFNPNFKSTCQRFVEKYIELQR 108

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1306963 Mrps23 "mitochondrial ribosomal protein S23" [Rattus norvegicus (taxid:10116)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 48/127 (37%), Positives = 69/127 (54%)

Query:     1 MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPI-----ADV 55
             MA SRLE +G++F+R   L+RAG +   EKP+WYD+Y+AFPP  EP++ RP      A  
Sbjct:     1 MAGSRLETVGSVFSRTRDLMRAGVLK--EKPLWYDIYKAFPPLKEPVFRRPRLRYGKAKA 58

Query:    56 PIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEA 115
              I++I Y ED IRAK     G      +L   N  +  Q+ + +  + Q    SL E + 
Sbjct:    59 DIQDIFYREDQIRAKFFSTYGSGHKAIDLFNPNFKSTCQRFVEKYTELQ----SLGETDE 114

Query:   116 LAKAIET 122
                 +ET
Sbjct:   115 EKLFVET 121

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA;ISO

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34748	YO67_CAEEL	No assigned EC number	0.3898	0.64	0.8421	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	175
pfam10484	74	pfam10484, MRP-S23, Mitochondrial ribosomal protei	0.004

>gnl|CDD|204498 pfam10484, MRP-S23, Mitochondrial ribosomal protein S23

 Score = 34.3 bits (79), Expect = 0.004
 Identities = 13/14 (92%), Positives = 13/14 (92%)

Query: 2  ASSRLEKIGTIFTR 15
          A SRLEKIGTIFTR
Sbjct: 1  AGSRLEKIGTIFTR 14

MRP-S23 is one of the proteins that makes up the 55S ribosome in eukaryotes from nematodes to humans. It does not appear to carry any common motifs, either RNA binding or ribosomal protein motifs. All of the mammalian MRPs are encoded in nuclear genes that are evolving more rapidly than those encoding cytoplasmic ribosomal proteins. The MRPs are imported into mitochondria where they assemble coordinately with mitochondrially transcribed rRNAs into ribosomes that are responsible for translating the 13 mRNAs for essential proteins of the oxidative phosphorylation system. MRP-S23 is significantly up-regulated in uterine cancer cells. Length = 74

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
PF10484	127	MRP-S23: Mitochondrial ribosomal protein S23; Inte	100.0
PF13741	231	MRP-S25: Mitochondrial ribosomal protein S25	99.97

>PF10484 MRP-S23: Mitochondrial ribosomal protein S23; InterPro: IPR023611 This entry represents a domain found in both the mitochondrial ribosomal 23S and 25S proteins

Probab=100.00  E-value=8.3e-56  Score=347.90  Aligned_cols=125  Identities=47%  Similarity=0.807  Sum_probs=119.4

Q ss_pred             CCccccccchHHHHHHHHHHcCCCCCCCCCcceeeeccCCCCCCCCcCCCCCCCCCCcccchhhHHHHHHHHhhCCCCCc
Q psy15859          2 ASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEIIYPEDSIRAKLHKALGKKMPG   81 (175)
Q Consensus         2 A~SRlek~GtIftRts~LLrsG~lk~~ekPlWYDVyaAfPPk~EP~~~rP~~~~~v~kI~Y~ED~IRAkFykqy~~~~~p   81 (175)
                      |||||||+|||||||+||||||+|||+|||||||||+||||++||+|+||.+..+||+|+|.||.|||+||+ |++++++
T Consensus         1 AgSRlEk~GtIftRv~~LlrsG~~k~~dkPLWyDVY~aFPP~~EP~~~rp~~~~~vr~I~Y~ED~iRAkFyk-~~~~~~~   79 (127)
T PF10484_consen    1 AGSRLEKIGTIFTRVRGLLRSGAMKWEDKPLWYDVYEAFPPKREPRYDRPLPKKPVREIFYEEDIIRAKFYK-YGRGPEA   79 (127)
T ss_pred             CCcchhhccchhHHHHHHHHcCCCCcccCCceeeehhcCCCCCCCcccCcCCCCCccccccHHHHHHHHHHH-cCCCCcc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999 6998999


Q ss_pred             cccCCCCCCCchhhhhHHHHHhhhcCCCCChHHHHHHHHHHHHHhhhh
Q psy15859         82 YNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAIETYNSEIRQ  129 (175)
Q Consensus        82 ~~Ls~pk~~s~~q~F~veky~~l~q~g~Ld~Esvfq~T~~lL~~e~~~  129 (175)
                      ++|++++++|.||+| |++|++|+++|.+|+|. |++|.++|+++...
T Consensus        80 ~~L~~~~~~s~~Q~F-v~kY~~l~~~~~~~ee~-f~~t~k~l~~eg~~  125 (127)
T PF10484_consen   80 FNLFDPNFKSTCQRF-VEKYQELKKEGELDEEA-FEETAKALLAEGII  125 (127)
T ss_pred             eecccCCCCcHHHHH-HHHHHHHHHcCCCcHHH-HHHHHHHHHHcCcc
Confidence            999999999999999 99999999999666666 99999999887654

The function of this conserved region is not known. In Saccharomyces cerevisiae (Baker's yeast) the mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S) [, ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome

>PF13741 MRP-S25: Mitochondrial ribosomal protein S25

Probab=99.97  E-value=2e-31  Score=227.02  Aligned_cols=131  Identities=20%  Similarity=0.429  Sum_probs=112.1

Q ss_pred             ccchHHHHHHHHHHcCCCCCCCCCcceeeeccCCCCC----CCCcCCC--------------------------------
Q psy15859          8 KIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKV----EPLYSRP--------------------------------   51 (175)
Q Consensus         8 k~GtIftRts~LLrsG~lk~~ekPlWYDVyaAfPPk~----EP~~~rP--------------------------------   51 (175)
                      .+.+|+.|||++|++|+|+  ++|+||||++++||..    +|....+                                
T Consensus         6 ~A~~V~q~~S~~L~sG~l~--~~P~Wy~vV~~~PP~~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ktr~~~~~~~~~   83 (231)
T PF13741_consen    6 NASNVLQRTSALLKSGLLK--QPPAWYDVVASIPPSTKLTRQPPPRHPSDNQRRKQLPGFSKPQNGLYKTRSNRKDKKRK   83 (231)
T ss_pred             hHhHHHHHHHHHHhcCCCC--CCCchHHHHHhCCCCcccCCCCCCcCccccccccccccccccccccccccccccccccc
Confidence            5678999999999999999  9999999999999983    2221111                                


Q ss_pred             -CCCCCCCcccchhhHHHHHHHHhhCCCCCccccCCCCCCCch-----hhhhHHHHHhhhcCC-CCChHHHHHHHHHHHH
Q psy15859         52 -IADVPIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVS-----QKIILQTLQHQKEDP-SLSEDEALAKAIETYN  124 (175)
Q Consensus        52 -~~~~~v~kI~Y~ED~IRAkFykqy~~~~~p~~Ls~pk~~s~~-----q~F~veky~~l~q~g-~Ld~Esvfq~T~~lL~  124 (175)
                       ...+++++|.|.||+||..||++    | ||+|++|+++.++     ++.|   |++|+|.| +||||+|||+|++||+
T Consensus        84 ~~~~~rp~kI~y~ED~LR~~Fy~d----H-PWElaRPk~lvE~~g~d~~~~D---WS~l~Q~gk~ldgEsvVQRtL~Ll~  155 (231)
T PF13741_consen   84 PSRLFRPPKIKYEEDKLRRQFYRD----H-PWELARPKILVENDGKDVQKCD---WSRLRQPGKPLDGESVVQRTLWLLN  155 (231)
T ss_pred             ccccCCCCCccCcHHHHHHHHhhc----C-ChhhcCCceeeecCCCccccCC---hhhhhcCCCCCcHHHHHHHHHHHHh
Confidence             01278999999999999999999    9 9999999988544     3566   99999999 9999999999999999


Q ss_pred             HhhhhhccCCCccccCCCCccccCCccc
Q psy15859        125 SEIRQVKADDIPEDFNKPKFGYYKTKPS  152 (175)
Q Consensus       125 ~e~~~~~~~~~~e~~~~~~f~~~~~~~~  152 (175)
                      ..    ...++.+|||.++||||.-+.+
T Consensus       156 n~----~~~~~~~AYd~Ar~EFy~LR~~  179 (231)
T PF13741_consen  156 NV----ENLSLSEAYDQARFEFYRLRME  179 (231)
T ss_pred             cc----CCCCHHHHHHHHHHHHHHHHHH
Confidence            85    7778889999999999986643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00