Psyllid ID: psy15928

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-----
VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQLFFIFTCLGGVVPASMV
ccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccEEEccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccEEEEEEccEEEEEEEcccHHccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccEEEEcccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEccccEEEEEcccccccccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccc
ccHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHccccccccEEEEEccccHHHHHHHHcHHHHHHHHHHHHccccccEEEEEEccEEEEcccHccccccccEEEEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHccccccccccEEEEccccccccccccEEEEEcccEEEEEEEEcHHHHHccccccccccEEEEEEEcccccccccHHHHHHHHHccccHcccEEEEcccccEEEEEEcccEEEccccEEcccccEEEEcccEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccEEEcccccccEEEEEHHHHHHHccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccEEEEcccccEEEEEcccccHHHHcHcHHHHHHHHHHccccccccccccccHHHHHHHHEHHcccccccccc
vplnklsdqlrGDIAQAGFTEVLTFALCSRDDVSVKLRQKmedipavhignpktlEFQIARTTLVPGLLKTLAankkmplplklfeisdivykdataevgarNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQipldktegycarnQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQipldktegyciqaadnatffpQRCANVMLRgskigtmgvlhpevlgkfeltlpcsileiniepfnfakmlyspfnscfssqthsqlkqylpiirdspvypvitdqngvvlslppiinshhsrisvnTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDKYHVESCEVlrsdgtsarypelkvRKEVVNVKKATKYigitqggqspdqdvsadkdplnglcfsesTDKVASLLTKMCLQtkilgsgaelsvsipptrhdiihtcdIYEDIAIaygynnipktmpRFASIARQLFFIFTClggvvpasmv
vplnklsdqlrgDIAQAGFTEVLTFALCSRDDVSVKLRQKMEdipavhignpktLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDKYHVESCEVLrsdgtsarypelkvrkevvnvKKATKyigitqggqspdqdvsADKDPLNGLCFSESTDKVASLLTKMCLQTKILgsgaelsvsipptRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQLFFIFTCLGGVVPASMV
VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQLFFIFTCLGGVVPASMV
************DIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGIT******************GLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQLFFIFTCLGGVV*****
VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCE**YHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQLFFIFTCLGGVVPASMV
VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQ***********DKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQLFFIFTCLGGVVPASMV
VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNG**FSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQLFFIFTCLGGVVPAS**
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VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQLFFIFTCLGGVVPASMV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query485 2.2.26 [Sep-21-2011]
Q9VCA5589 Probable phenylalanine--t yes N/A 0.410 0.337 0.543 5e-69
Q9WUA2589 Phenylalanine--tRNA ligas yes N/A 0.406 0.334 0.543 3e-68
Q9NSD9589 Phenylalanine--tRNA ligas yes N/A 0.406 0.334 0.539 4e-68
Q5R7F7589 Phenylalanine--tRNA ligas no N/A 0.406 0.334 0.535 7e-67
Q19713591 Phenylalanine--tRNA ligas yes N/A 0.406 0.333 0.495 2e-61
O42849589 Phenylalanine--tRNA ligas yes N/A 0.404 0.332 0.409 1e-42
Q550D2 617 Phenylalanine--tRNA ligas yes N/A 0.393 0.309 0.413 2e-42
Q9SGE9598 Probable phenylalanine--t yes N/A 0.414 0.336 0.379 3e-42
O13432592 Phenylalanine--tRNA ligas N/A N/A 0.418 0.342 0.376 8e-40
P15624595 Phenylalanine--tRNA ligas yes N/A 0.420 0.342 0.388 1e-38
>sp|Q9VCA5|SYFB_DROME Probable phenylalanine--tRNA ligase beta subunit OS=Drosophila melanogaster GN=CG5706 PE=2 SV=1 Back     alignment and function desciption
 Score =  262 bits (669), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 130/239 (54%), Positives = 157/239 (65%), Gaps = 40/239 (16%)

Query: 2   PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIAR 61
           PLNKL++QLR  +AQAGFTE LTF LCSRDD+  KL + ++ +PAVHIGNPKTLEFQ+ R
Sbjct: 390 PLNKLTEQLREQVAQAGFTEALTFTLCSRDDIGRKLNKNIDALPAVHIGNPKTLEFQVVR 449

Query: 62  TTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEII 121
           TTL+PGLLKTL AN+KMPLPLKLFEISD+V  D + EVGARN+R + AV  NK+ GFE++
Sbjct: 450 TTLLPGLLKTLVANRKMPLPLKLFEISDVVVADESTEVGARNERRVCAVNCNKTAGFEVV 509

Query: 122 HGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDK 181
           HGLLDRVMQLL +P     G                                        
Sbjct: 510 HGLLDRVMQLLSVPWKSASG---------------------------------------- 529

Query: 182 TEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF 240
           T+GY +QA ++ ++FP RCANVM  G  IG +GVLHP VL  FELT PCS +E  IEPF
Sbjct: 530 TKGYYLQATEDPSYFPGRCANVMYDGVVIGKIGVLHPTVLQAFELTTPCSAVEFTIEPF 588

Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0
>sp|Q9WUA2|SYFB_MOUSE Phenylalanine--tRNA ligase beta subunit OS=Mus musculus GN=Farsb PE=2 SV=2 Back     alignment and function description
>sp|Q9NSD9|SYFB_HUMAN Phenylalanine--tRNA ligase beta subunit OS=Homo sapiens GN=FARSB PE=1 SV=3 Back     alignment and function description
>sp|Q5R7F7|SYFB_PONAB Phenylalanine--tRNA ligase beta subunit OS=Pongo abelii GN=FARSB PE=2 SV=1 Back     alignment and function description
>sp|Q19713|SYFB_CAEEL Phenylalanine--tRNA ligase beta subunit OS=Caenorhabditis elegans GN=frs-2 PE=1 SV=2 Back     alignment and function description
>sp|O42849|SYFB_SCHPO Phenylalanine--tRNA ligase beta subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=frs1 PE=3 SV=1 Back     alignment and function description
>sp|Q550D2|SYFB_DICDI Phenylalanine--tRNA ligase beta subunit OS=Dictyostelium discoideum GN=phesB PE=3 SV=2 Back     alignment and function description
>sp|Q9SGE9|SYFB_ARATH Probable phenylalanine--tRNA ligase beta subunit OS=Arabidopsis thaliana GN=At1g72550 PE=2 SV=1 Back     alignment and function description
>sp|O13432|SYFB_CANAX Phenylalanine--tRNA ligase beta subunit OS=Candida albicans GN=FRS1 PE=2 SV=3 Back     alignment and function description
>sp|P15624|SYFB_YEAST Phenylalanine--tRNA ligase beta subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FRS1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query485
321463870 589 hypothetical protein DAPPUDRAFT_214647 [ 0.408 0.336 0.543 1e-70
332022375 591 Putative phenylalanyl-tRNA synthetase be 0.410 0.336 0.564 2e-70
307186887 589 Probable phenylalanyl-tRNA synthetase be 0.410 0.337 0.560 2e-69
56090156 590 phenylalanyl-tRNA synthetase beta chain 0.406 0.333 0.554 3e-69
410969535 589 PREDICTED: phenylalanine--tRNA ligase be 0.406 0.334 0.564 3e-69
74005575 589 PREDICTED: phenylalanyl-tRNA synthetase 0.406 0.334 0.560 4e-69
383850484 590 PREDICTED: probable phenylalanine--tRNA 0.410 0.337 0.556 1e-68
440912892 587 Phenylalanyl-tRNA synthetase beta chain 0.406 0.335 0.560 1e-68
157279951 589 phenylalanyl-tRNA synthetase beta chain 0.406 0.334 0.560 1e-68
335775086544 phenylalanyl-tRNA synthetase beta chain- 0.406 0.362 0.564 1e-68
>gi|321463870|gb|EFX74882.1| hypothetical protein DAPPUDRAFT_214647 [Daphnia pulex] Back     alignment and taxonomy information
 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/239 (54%), Positives = 169/239 (70%), Gaps = 41/239 (17%)

Query: 2   PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIAR 61
           PLNKLSDQLR  +AQAGFTE LTF+LCS++D+S KLR+ +  +PAVH+ NPKTLEFQ+AR
Sbjct: 391 PLNKLSDQLRDQLAQAGFTEALTFSLCSKEDISEKLRKPLNSVPAVHVSNPKTLEFQVAR 450

Query: 62  TTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEII 121
           TTL+ GLLKT+AAN+KMPLP+KLFE+SD+V KD+  +VGARN RNL AVYYNKSPGFE++
Sbjct: 451 TTLLSGLLKTIAANRKMPLPMKLFEVSDVVVKDSQRDVGARNCRNLCAVYYNKSPGFELV 510

Query: 122 HGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDK 181
           HGLLDR+MQLL++PLD++                                          
Sbjct: 511 HGLLDRLMQLLEVPLDQS-----------------------------------------G 529

Query: 182 TEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF 240
           ++GY ++  ++ATFFP RCA ++  G+ +G +GVLHP+V+  F+L LPCS LE NIEPF
Sbjct: 530 SKGYFLKPCEDATFFPGRCAQIIFAGTVVGIVGVLHPDVVTSFDLNLPCSALEFNIEPF 588

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332022375|gb|EGI62687.1| Putative phenylalanyl-tRNA synthetase beta chain [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307186887|gb|EFN72288.1| Probable phenylalanyl-tRNA synthetase beta chain [Camponotus floridanus] Back     alignment and taxonomy information
>gi|56090156|ref|NP_001007769.1| phenylalanyl-tRNA synthetase beta chain [Danio rerio] gi|55715799|gb|AAH85625.1| Phenylalanine-tRNA synthetase-like [Danio rerio] Back     alignment and taxonomy information
>gi|410969535|ref|XP_003991250.1| PREDICTED: phenylalanine--tRNA ligase beta subunit [Felis catus] Back     alignment and taxonomy information
>gi|74005575|ref|XP_536085.2| PREDICTED: phenylalanyl-tRNA synthetase beta chain isoform 1 [Canis lupus familiaris] Back     alignment and taxonomy information
>gi|383850484|ref|XP_003700825.1| PREDICTED: probable phenylalanine--tRNA ligase beta subunit-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|440912892|gb|ELR62416.1| Phenylalanyl-tRNA synthetase beta chain [Bos grunniens mutus] Back     alignment and taxonomy information
>gi|157279951|ref|NP_001098491.1| phenylalanyl-tRNA synthetase beta chain [Bos taurus] gi|154425714|gb|AAI51419.1| FARSB protein [Bos taurus] gi|296490213|tpg|DAA32326.1| TPA: phenylalanyl-tRNA synthetase, beta subunit [Bos taurus] Back     alignment and taxonomy information
>gi|335775086|gb|AEH58454.1| phenylalanyl-tRNA synthetase beta chain-like protein, partial [Equus caballus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query485
FB|FBgn0039175589 CG5706 [Drosophila melanogaste 0.288 0.237 0.678 1.4e-48
UNIPROTKB|F6XQ20589 FARSB "Uncharacterized protein 0.290 0.239 0.697 1.8e-48
MGI|MGI:1346035589 Farsb "phenylalanyl-tRNA synth 0.290 0.239 0.676 2.6e-47
UNIPROTKB|F1SR70356 LOC100524650 "Uncharacterized 0.294 0.401 0.534 5.4e-57
RGD|1303210589 Farsb "phenylalanyl-tRNA synth 0.290 0.239 0.683 7.7e-48
UNIPROTKB|F5H6Y1490 FARSB "Phenylalanine--tRNA lig 0.288 0.285 0.685 6e-48
ZFIN|ZDB-GENE-021206-2590 farsb "phenylalanyl-tRNA synth 0.292 0.240 0.690 5.8e-50
UNIPROTKB|Q9NSD9589 FARSB "Phenylalanine--tRNA lig 0.288 0.237 0.685 6e-48
UNIPROTKB|A8E4P2589 FARSB "Uncharacterized protein 0.296 0.244 0.689 5.2e-49
UNIPROTKB|Q5ZJ61589 FARSB "Uncharacterized protein 0.292 0.241 0.704 9.5e-50
FB|FBgn0039175 CG5706 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 95/140 (67%), Positives = 114/140 (81%)

Query:     2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIAR 61
             PLNKL++QLR  +AQAGFTE LTF LCSRDD+  KL + ++ +PAVHIGNPKTLEFQ+ R
Sbjct:   390 PLNKLTEQLREQVAQAGFTEALTFTLCSRDDIGRKLNKNIDALPAVHIGNPKTLEFQVVR 449

Query:    62 TTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEII 121
             TTL+PGLLKTL AN+KMPLPLKLFEISD+V  D + EVGARN+R + AV  NK+ GFE++
Sbjct:   450 TTLLPGLLKTLVANRKMPLPLKLFEISDVVVADESTEVGARNERRVCAVNCNKTAGFEVV 509

Query:   122 HGLLDRVMQLLQIPLDKTEG 141
             HGLLDRVMQLL +P     G
Sbjct:   510 HGLLDRVMQLLSVPWKSASG 529
GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=ISS
GO:0009328 "phenylalanine-tRNA ligase complex" evidence=ISS
GO:0004826 "phenylalanine-tRNA ligase activity" evidence=ISS
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA
UNIPROTKB|F6XQ20 FARSB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1346035 Farsb "phenylalanyl-tRNA synthetase, beta subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SR70 LOC100524650 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1303210 Farsb "phenylalanyl-tRNA synthetase, beta subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F5H6Y1 FARSB "Phenylalanine--tRNA ligase beta subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-021206-2 farsb "phenylalanyl-tRNA synthetase, beta subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NSD9 FARSB "Phenylalanine--tRNA ligase beta subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A8E4P2 FARSB "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ61 FARSB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VCA5SYFB_DROME6, ., 1, ., 1, ., 2, 00.54390.41030.3378yesN/A
Q9NSD9SYFB_HUMAN6, ., 1, ., 1, ., 2, 00.53970.40610.3344yesN/A
Q9WUA2SYFB_MOUSE6, ., 1, ., 1, ., 2, 00.54390.40610.3344yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.200.737
3rd Layer6.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query485
PLN02265 597 PLN02265, PLN02265, probable phenylalanyl-tRNA syn 6e-81
PLN02265597 PLN02265, PLN02265, probable phenylalanyl-tRNA syn 8e-75
TIGR00471 551 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase 2e-45
cd00769198 cd00769, PheRS_beta_core, Phenylalanyl-tRNA synthe 1e-43
PRK09616 552 PRK09616, pheT, phenylalanyl-tRNA synthetase subun 2e-40
TIGR00471551 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase 3e-39
COG0072650 COG0072, PheT, Phenylalanyl-tRNA synthetase beta s 6e-37
PRK09616552 PRK09616, pheT, phenylalanyl-tRNA synthetase subun 7e-35
COG0072 650 COG0072, PheT, Phenylalanyl-tRNA synthetase beta s 5e-30
PRK00629791 PRK00629, pheT, phenylalanyl-tRNA synthetase subun 4e-18
TIGR00472797 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase 9e-16
smart0087468 smart00874, B5, tRNA synthetase B5 domain 8e-12
pfam03483159 pfam03483, B3_4, B3/4 domain 1e-11
PRK00629 791 PRK00629, pheT, phenylalanyl-tRNA synthetase subun 3e-10
pfam0348470 pfam03484, B5, tRNA synthetase B5 domain 5e-10
smart00873174 smart00873, B3_4, B3/4 domain 4e-09
TIGR00472 797 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase 1e-08
CHL00192 704 CHL00192, syfB, phenylalanyl-tRNA synthetase beta 1e-04
>gnl|CDD|215149 PLN02265, PLN02265, probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information 
 Score =  262 bits (671), Expect = 6e-81
 Identities = 103/210 (49%), Positives = 135/210 (64%), Gaps = 24/210 (11%)

Query: 261 QLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKI 320
           +LK++L II +SPV+PVI D N  VLSLPPIIN  HS I+++T+N+FIECTATDLTKAKI
Sbjct: 211 KLKKFLHIIENSPVFPVIYDSNRTVLSLPPIINGAHSAITLDTKNVFIECTATDLTKAKI 270

Query: 321 VLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQ 380
           VL+T+VTMFS+YC  K+ VE  EV+  DG S  YP+L VR   V++      IG++   +
Sbjct: 271 VLNTMVTMFSEYCARKFEVEPVEVVYPDGKSTVYPDLSVRTMEVDLSYINSSIGVSLDAE 330

Query: 381 SPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILG-SGAELSVSIPPTRHDIIHT 439
                                  +VASLL KM LQ +     G  + VS+PPTR DI+H 
Sbjct: 331 -----------------------EVASLLNKMQLQAEQSSDDGCTIRVSVPPTRSDILHP 367

Query: 440 CDIYEDIAIAYGYNNIPKTMPRFASIARQL 469
           CD+ ED+AIAYGYNNIPK  P+  ++ +Q 
Sbjct: 368 CDVAEDVAIAYGYNNIPKRKPKSMTVGKQQ 397

Length = 597
>gnl|CDD|215149 PLN02265, PLN02265, probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information
>gnl|CDD|232989 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>gnl|CDD|238392 cd00769, PheRS_beta_core, Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>gnl|CDD|236592 PRK09616, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|232989 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>gnl|CDD|223150 COG0072, PheT, Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236592 PRK09616, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|223150 COG0072, PheT, Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|232990 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>gnl|CDD|197942 smart00874, B5, tRNA synthetase B5 domain Back     alignment and domain information
>gnl|CDD|202662 pfam03483, B3_4, B3/4 domain Back     alignment and domain information
>gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|202663 pfam03484, B5, tRNA synthetase B5 domain Back     alignment and domain information
>gnl|CDD|214876 smart00873, B3_4, B3/4 domain Back     alignment and domain information
>gnl|CDD|232990 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>gnl|CDD|214391 CHL00192, syfB, phenylalanyl-tRNA synthetase beta chain; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 485
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 100.0
CHL00192704 syfB phenylalanyl-tRNA synthetase beta chain; Prov 100.0
PRK00629791 pheT phenylalanyl-tRNA synthetase subunit beta; Re 100.0
COG0072650 PheT Phenylalanyl-tRNA synthetase beta subunit [Tr 100.0
TIGR00472798 pheT_bact phenylalanyl-tRNA synthetase, beta subun 100.0
PLN02265597 probable phenylalanyl-tRNA synthetase beta chain 100.0
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 100.0
TIGR00471551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 100.0
PLN02265 597 probable phenylalanyl-tRNA synthetase beta chain 100.0
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 100.0
TIGR00471 551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 100.0
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 99.97
PRK09616 552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 99.97
PRK06253529 O-phosphoseryl-tRNA synthetase; Reviewed 99.96
KOG2472|consensus 578 99.96
KOG2472|consensus578 99.95
CHL00192 704 syfB phenylalanyl-tRNA synthetase beta chain; Prov 99.95
PRK00629 791 pheT phenylalanyl-tRNA synthetase subunit beta; Re 99.95
TIGR00472 798 pheT_bact phenylalanyl-tRNA synthetase, beta subun 99.95
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 99.94
COG0072 650 PheT Phenylalanyl-tRNA synthetase beta subunit [Tr 99.94
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 99.9
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.89
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.89
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 99.87
TIGR00470533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 99.84
PLN02788402 phenylalanine-tRNA synthetase 99.82
PF0348470 B5: tRNA synthetase B5 domain; InterPro: IPR005147 99.81
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 99.79
smart0087471 B5 tRNA synthetase B5 domain. This domain is found 99.77
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 99.55
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 99.52
TIGR00469460 pheS_mito phenylalanyl-tRNA synthetase, mitochondr 99.51
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 99.51
COG2024536 Phenylalanyl-tRNA synthetase alpha subunit (archae 99.2
KOG2784|consensus483 98.66
PF03483174 B3_4: B3/4 domain; InterPro: IPR005146 This entry 98.51
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 97.62
smart00873174 B3_4 B3/4 domain. This domain is found in tRNA syn 97.29
PRK00037412 hisS histidyl-tRNA synthetase; Reviewed 97.27
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 97.08
TIGR00442397 hisS histidyl-tRNA synthetase. This model finds a 97.06
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 97.06
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 97.04
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 96.97
PRK12292391 hisZ ATP phosphoribosyltransferase regulatory subu 96.92
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 96.83
CHL00201430 syh histidine-tRNA synthetase; Provisional 96.73
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 96.55
PRK12420423 histidyl-tRNA synthetase; Provisional 96.53
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 96.42
PLN02530487 histidine-tRNA ligase 96.26
PRK12295373 hisZ ATP phosphoribosyltransferase regulatory subu 95.99
PLN02972763 Histidyl-tRNA synthetase 95.89
PRK12444639 threonyl-tRNA synthetase; Reviewed 95.61
COG0124429 HisS Histidyl-tRNA synthetase [Translation, riboso 94.72
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 94.72
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 94.69
PRK09194565 prolyl-tRNA synthetase; Provisional 94.69
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 94.66
TIGR00409568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 94.51
PLN02908686 threonyl-tRNA synthetase 94.33
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 94.32
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 94.21
PLN02837614 threonine-tRNA ligase 93.88
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 93.71
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 93.52
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 93.33
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 92.03
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 90.6
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 90.42
PRK06462335 asparagine synthetase A; Reviewed 89.74
PRK00960517 seryl-tRNA synthetase; Provisional 89.67
PRK12325439 prolyl-tRNA synthetase; Provisional 89.62
PRK09350306 poxB regulator PoxA; Provisional 89.58
PRK03991613 threonyl-tRNA synthetase; Validated 88.71
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 88.51
KOG2783|consensus436 88.38
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 87.56
TIGR00414418 serS seryl-tRNA synthetase. This model represents 86.83
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 86.43
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 86.31
PTZ00417585 lysine-tRNA ligase; Provisional 85.56
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 85.52
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 84.51
TIGR00408472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 84.42
PTZ00385659 lysyl-tRNA synthetase; Provisional 84.42
PLN02502553 lysyl-tRNA synthetase 83.89
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 83.05
PRK08661477 prolyl-tRNA synthetase; Provisional 83.05
PRK05431425 seryl-tRNA synthetase; Provisional 82.31
PRK12445505 lysyl-tRNA synthetase; Reviewed 82.19
COG3382229 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe- 81.97
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 81.85
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 80.96
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 80.39
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information 
Probab=100.00  E-value=8.4e-42  Score=325.58  Aligned_cols=196  Identities=33%  Similarity=0.571  Sum_probs=162.9

Q ss_pred             hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCC-CC
Q psy15928          3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP-LP   81 (485)
Q Consensus         3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~-~~   81 (485)
                      .+.+++++|+.|+++||+|++||||++++.. +.++.+  ....|+|.||+|+|+++||+||+||||+++++|++++ .+
T Consensus         2 ~~~~~~~ir~~L~~~G~~E~~tys~~~~~~~-~~~~~~--~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~   78 (198)
T cd00769           2 LQKLERKLRRLLAGLGFQEVITYSLTSPEEA-ELFDGG--LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKP   78 (198)
T ss_pred             chHHHHHHHHHHHHCCCceeecccCCCHHHH-HhccCC--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            4678999999999999999999999999764 555332  2357999999999999999999999999999999875 79


Q ss_pred             eeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCCH
Q psy15928         82 LKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGF  161 (485)
Q Consensus        82 ~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  161 (485)
                      ++|||||+||.++..   .+.|+.+++++++|....                      ..|...          .++.||
T Consensus        79 ~~lFEiG~vf~~~~~---~~~e~~~l~~~~~g~~~~----------------------~~w~~~----------~~~~~f  123 (198)
T cd00769          79 LRLFEIGRVFLKDED---GPEEEEHLAALLSGNREP----------------------ESWQGK----------GRPVDF  123 (198)
T ss_pred             EeEEEeEeEEecCCC---CCcchheEEEEEECCCcc----------------------ccccCC----------CCccCH
Confidence            999999999976431   235778999999996421                      234321          344799


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEeccccc
Q psy15928        162 EIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF  240 (485)
Q Consensus       162 ~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei~ld~L  240 (485)
                      +++||+++.++..+|+..    .+...+...++|||||+|+|+++|+.+|++|+|||+++++|||+.|+++|||||+.|
T Consensus       124 ~~~Kg~ve~ll~~l~~~~----~~~~~~~~~~~~hpg~~a~I~~~g~~vG~~G~lhP~v~~~~~l~~~v~~~Ei~l~~l  198 (198)
T cd00769         124 YDAKGILEALLRALGIIV----EFELEELDADLFHPGRSAKIYVNGEVIGFIGELHPEVLKEFDLKEPVYAFELDLDAL  198 (198)
T ss_pred             hhHHHHHHHHHHHcCCeE----EEEecCCCCCccCCCceEEEEECCEEEEEEEeeCHHHHHHcCCCCceEEEEEecccC
Confidence            999999999999998731    133333556779999999999999999999999999999999999999999999865

PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional Back     alignment and domain information
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG2472|consensus Back     alignment and domain information
>KOG2472|consensus Back     alignment and domain information
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional Back     alignment and domain information
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>smart00874 B5 tRNA synthetase B5 domain Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2784|consensus Back     alignment and domain information
>PF03483 B3_4: B3/4 domain; InterPro: IPR005146 This entry represents the B3/B4 domain found in tRNA synthetase beta subunits as well as in some non-tRNA synthetase proteins Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>smart00873 B3_4 B3/4 domain Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>KOG2783|consensus Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG3382 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only] Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query485
3l4g_B589 Crystal Structure Of Homo Sapiens Cytoplasmic Pheny 2e-69
3l4g_B 589 Crystal Structure Of Homo Sapiens Cytoplasmic Pheny 3e-58
2cxi_A348 Crystal Structure Of An N-Terminal Fragment Of The 5e-15
2rhq_B 795 Phers From Staphylococcus Haemolyticus- Rational Pr 2e-06
2rhs_B 800 Phers From Staphylococcus Haemolyticus- Rational Pr 2e-06
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic Phenylalanyl-T Synthetase Length = 589 Back     alignment and structure 
Iteration: 1

 Score =  259 bits (663), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/239 (54%), Positives = 160/239 (66%), Gaps = 42/239 (17%)
Query: 2   PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIAR 61
           PLNKL++ LR D+A AGFTE LTFALCS++D++ KL   +    AVHI NPKT EFQ+AR
Sbjct: 392 PLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVAR 451
Query: 62  TTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEII 121
           TTL+PGLLKT+AAN+KMPLPLKLFEISDIV KD+  +VGA+N R+L AVYYNK+PGFEII
Sbjct: 452 TTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEII 511
Query: 122 HGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDK 181
           HGLLDR+MQLL +P  + +G                                        
Sbjct: 512 HGLLDRIMQLLDVPPGEDKG---------------------------------------- 531
Query: 182 TEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF 240
             GY I+A++   FFP RCA +  RG  +G +GVLHP+V+ KFELT+PCS LEINI PF
Sbjct: 532 --GYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINIGPF 588
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic Phenylalanyl-T Synthetase Length = 589 Back     alignment and structure
>pdb|2CXI|A Chain A, Crystal Structure Of An N-Terminal Fragment Of The Phenylalanyl-Trna Synthetase Beta-Subunit From Pyrococcus Horikoshii Length = 348 Back     alignment and structure
>pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 795 Back     alignment and structure
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 800 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query485
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 2e-68
3l4g_B 589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 1e-62
2cxi_A348 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 8e-43
3pco_B795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 6e-19
3pco_B 795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 9e-10
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 8e-19
2rhq_B 795 Phenylalanyl-tRNA synthetase beta chain; heterotet 3e-12
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 1e-18
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 8e-18
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 2e-16
1b7y_B 785 Phers, protein (phenylalanyl-tRNA synthetase); enz 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Length = 589 Back     alignment and structure
 Score =  228 bits (583), Expect = 2e-68
 Identities = 130/239 (54%), Positives = 160/239 (66%), Gaps = 42/239 (17%)

Query: 2   PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIAR 61
           PLNKL++ LR D+A AGFTE LTFALCS++D++ KL   +    AVHI NPKT EFQ+AR
Sbjct: 392 PLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVAR 451

Query: 62  TTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEII 121
           TTL+PGLLKT+AAN+KMPLPLKLFEISDIV KD+  +VGA+N R+L AVYYNK+PGFEII
Sbjct: 452 TTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEII 511

Query: 122 HGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDK 181
           HGLLDR+MQLL +P  + +G                                        
Sbjct: 512 HGLLDRIMQLLDVPPGEDKG---------------------------------------- 531

Query: 182 TEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF 240
             GY I+A++   FFP RCA +  RG  +G +GVLHP+V+ KFELT+PCS LEINI PF
Sbjct: 532 --GYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINIGPF 588
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Length = 589 Back     alignment and structure
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} Length = 348 Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Length = 795 Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Length = 795 Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Length = 795 Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Length = 795 Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Length = 213 Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Length = 213 Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Length = 785 Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Length = 785 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query485
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 100.0
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 100.0
3pco_B795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 100.0
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 100.0
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 100.0
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 100.0
3l4g_B 589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 100.0
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 100.0
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 100.0
2odr_B648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 100.0
2odr_A665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 100.0
2du7_A549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 99.98
2cxi_A348 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 99.97
2du3_A534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 99.97
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 99.97
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.97
3pco_B 795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 99.96
2rhq_B 795 Phenylalanyl-tRNA synthetase beta chain; heterotet 99.96
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 99.96
1b7y_B 785 Phers, protein (phenylalanyl-tRNA synthetase); enz 99.96
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 99.95
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 99.94
3cmq_A415 Phenylalanyl-tRNA synthetase, mitochondrial; class 99.93
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.93
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 97.3
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 97.29
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 97.26
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 97.14
2rhq_A 294 Phenylalanyl-tRNA synthetase alpha chain; heterote 97.04
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 96.91
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 96.75
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 96.73
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 96.71
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 96.5
2du3_A 534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 96.46
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 96.36
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 96.35
4g84_A464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 96.32
4g85_A517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 96.27
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 95.53
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 95.35
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 95.32
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 95.05
2j3l_A572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 94.77
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 94.01
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 93.81
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 93.76
1hc7_A477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 93.05
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 92.61
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 92.14
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 91.42
3ial_A518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 90.64
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 90.39
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 90.13
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 89.97
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 89.48
3err_A536 Fusion protein of microtubule binding domain from 88.94
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 88.44
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 87.96
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 87.58
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 87.36
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 86.95
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 86.7
2cxi_A 348 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 85.28
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 85.15
4hvc_A519 Bifunctional glutamate/proline--tRNA ligase; ligas 84.49
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 84.33
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 84.25
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 81.02
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
Probab=100.00  E-value=3.4e-45  Score=351.51  Aligned_cols=200  Identities=22%  Similarity=0.294  Sum_probs=167.5

Q ss_pred             hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCC-CC
Q psy15928          3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP-LP   81 (485)
Q Consensus         3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~-~~   81 (485)
                      .+++++++|+.|+++||+|++||||++++. ++.++.. +....|+|+||||+|+++|||||+||||+++++|++|+ .+
T Consensus         6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~-~~~~~~~-~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~   83 (213)
T 3ica_A            6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSY-YEGLKSH-PREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLS   83 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCEECCCCSEEEGGG-GTTCSSS-CGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSE
T ss_pred             HHHHHHHHHHHHHHCCCceeeeccCCCHHH-Hhhhccc-CcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCC
Confidence            578999999999999999999999999986 3666532 12357999999999999999999999999999999985 57


Q ss_pred             eeEEEeCcEEecCCccc------cccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhc
Q psy15928         82 LKLFEISDIVYKDATAE------VGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYY  155 (485)
Q Consensus        82 ~rlFEiG~Vf~~~~~~~------~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (485)
                      +||||||+||.+++...      .+..|+.+++++++|+..+                      .+|+..          
T Consensus        84 ~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~----------------------~~w~~~----------  131 (213)
T 3ica_A           84 LYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVH----------------------NSWAHP----------  131 (213)
T ss_dssp             EEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC---------------------------C----------
T ss_pred             eeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCc----------------------ccCCCC----------
Confidence            99999999998754210      1135778999999997532                      456553          


Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEe
Q psy15928        156 NKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEI  235 (485)
Q Consensus       156 ~~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei  235 (485)
                      .++.|||++||+|+++++.+|+...   .+++++..+++|||||+|+ +++|+.||++|+|||+++++|||+.++|+|||
T Consensus       132 ~~~~df~d~Kg~ve~ll~~lgi~~~---~~~~~~~~~~~~hpgr~a~-~~~g~~iG~~G~lhP~v~~~~~l~~~v~~~El  207 (213)
T 3ica_A          132 EEPTSVFELKAVVEQVLCRVGIETG---AYTLKTADNDLYASAMEVK-TRSGKLLGTFGTVSTELIKRFEIEQPVYFAEL  207 (213)
T ss_dssp             CCBCCHHHHHHHHHHHHHHTTCCGG---GEEEEECCCTTEEEEEEEE-ETTCCEEEEEEEECHHHHHHTTCCSCEEEEEE
T ss_pred             CCCcCHHHHHHHHHHHHHHhCCCcc---ceEEeeccCCCCCCCeEEE-eECCcEEEEEeEECHHHHHHcCCCCCeEEEEE
Confidence            4568999999999999999998621   2788888889999999998 88999999999999999999999999999999


Q ss_pred             ccccc
Q psy15928        236 NIEPF  240 (485)
Q Consensus       236 ~ld~L  240 (485)
                      ||+.|
T Consensus       208 dl~~l  212 (213)
T 3ica_A          208 LWDAL  212 (213)
T ss_dssp             EHHHH
T ss_pred             EhHHh
Confidence            99986
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 485
d1jjcb5207 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheR 2e-15
d1jjcb275 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-bet 1e-08
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Length = 207 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain
species: Thermus thermophilus [TaxId: 274]

 Score = 73.0 bits (178), Expect = 2e-15
 Identities = 44/235 (18%), Positives = 83/235 (35%), Gaps = 54/235 (22%)

Query: 5   KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTL 64
           +   +LR  ++  GF EV T++    +D     R+   D P + + NP   E    RT L
Sbjct: 19  RKEQRLREVLSGLGFQEVYTYSFMDPED----ARRFRLDPPRLLLLNPLAPEKAALRTHL 74

Query: 65  VPGLLKTLAANKKMPLP--LKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIH 122
            PGL++ L  N  +  P    LFE+  +  +                             
Sbjct: 75  FPGLVRVLKENLDLDRPERALLFEVGRVFRERE--------------------------- 107

Query: 123 GLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKT 182
                         +         +   +     +  G+ ++ G L+ +   L +     
Sbjct: 108 --------------ETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGLA---- 149

Query: 183 EGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINI 237
             + ++A       P     V++ G ++G +G LHPE+  + EL  P  + E+ +
Sbjct: 150 --FRVEAQAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELELP-PVHLFELRL 201
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Length = 75 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query485
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 100.0
d1jjcb275 Domains B1 and B5 of PheRS-beta, PheT {Thermus the 99.89
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 99.45
d1jjcb6209 B3/B4 domain of PheRS, PheT {Thermus thermophilus 98.8
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 96.56
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 96.28
d1jjcb177 Domains B1 and B5 of PheRS-beta, PheT {Thermus the 95.43
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 95.06
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 94.98
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 94.49
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 92.81
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 92.57
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 91.22
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 90.66
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 90.5
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 87.45
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 87.3
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 85.21
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 82.33
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.9e-41  Score=320.46  Aligned_cols=184  Identities=24%  Similarity=0.492  Sum_probs=159.9

Q ss_pred             hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCC-CC
Q psy15928          3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP-LP   81 (485)
Q Consensus         3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~-~~   81 (485)
                      -+++++++|+.|+++||+|++||||+|++.+ +.++..   ...|+|.||||+|+++||+||+||||+++++|++|+ .+
T Consensus        17 ~~~~~~~ir~~L~~~Gf~Ev~tysf~s~~~~-~~~~~~---~~~i~l~NPis~e~~~lR~sLlpgLL~~~~~N~~r~~~~   92 (207)
T d1jjcb5          17 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDA-RRFRLD---PPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPE   92 (207)
T ss_dssp             HHHHHHHHHHHHHHHTCEECCCCSEECTTHH-HHTTCC---CCSCEESSCSSGGGSEECSCSHHHHHHHHHHHHHHSCCS
T ss_pred             hHHHHHHHHHHHHHCCcchhcCCCcCCHHHH-HhhcCC---CCcEEEeCCcchhhhhhhhhcchHHHHHHHhCccccccc
Confidence            4678999999999999999999999999975 777642   356999999999999999999999999999998763 44


Q ss_pred             -eeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCC
Q psy15928         82 -LKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPG  160 (485)
Q Consensus        82 -~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (485)
                       +++||||+||.+.        ++.+++++++|....                      ..|+.           .++.|
T Consensus        93 ~~~lFEiG~vf~~~--------~~~~~~~~~~g~~~~----------------------~~~~~-----------~~~~d  131 (207)
T d1jjcb5          93 RALLFEVGRVFRER--------EETHLAGLLFGEGVG----------------------LPWAK-----------ERLSG  131 (207)
T ss_dssp             EEEEEEEEEEESSS--------EEEEEEEEEEESCBS----------------------CTTSS-----------CCBCH
T ss_pred             ceeeEeeeeeeecc--------ccccchhhhhhcccc----------------------ccccc-----------ccchh
Confidence             8999999999642        356888899987521                      23432           34589


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEeccc
Q psy15928        161 FEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIE  238 (485)
Q Consensus       161 f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei~ld  238 (485)
                      ||++||+++.++..+|+.      +.+.+.++++|||||+|.|+++|+.||++|+|||+++++|||+ +||+|||||+
T Consensus       132 f~~~Kg~v~~ll~~lg~~------~~~~~~~~~~~hpg~~a~I~~~~~~iG~~G~l~p~i~~~~~i~-~v~~~Ei~l~  202 (207)
T d1jjcb5         132 YFLLKGYLEALFARLGLA------FRVEAQAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELELP-PVHLFELRLP  202 (207)
T ss_dssp             HHHHHHHHHHHHHHHTCC------EEEEECCCTTEEEEEEEEEEESSSEEEEEEEECHHHHHHTTCC-CCEEEEEEES
T ss_pred             HHHHHHHHHHHHHhhhcc------cccccccCCccCCCeEEEEEECCeEEEEEEEECHHHHHHcCCC-ceEEEEEeCC
Confidence            999999999999999985      5677778899999999999999999999999999999999997 8999999997
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjcb6 b.153.1.1 (B:191-399) B3/B4 domain of PheRS, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure