Psyllid ID: psy15991

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
MFKIQCELSFVLFSITVVHAVLSGLYVDNGVDQIIQRTLSTKEKQDVSHDLLNLLGLPLRPKHLFSNATSIEGSVPKFLMDIYRSLDNPRRTTRSEFNLGGKDLQSIDESDMIMGFSSRNHHVSNVRHEHGKRIWFDVSEVPPGETIVNSELRIYQMINTTADPWLQFTVSIYQVLVDGELEYVDSVNTTAGSEGWMLFNVTGPLVSWVAIPHSNKGLYLSVQPREKPIHEIRTEDIGIVASKVMHLEEKQPFMVAFFKSAHGGITVRPRSRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIHNLEDSN
ccHHHHHHHHHHHHHHHHHHHHcccEEccccccHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccEEEEccccccccccccccccEEEEEEcccccccccEEEEEEEEEEccccccccccEEEEEEEEEEcccccEEEEEEEEccccccEEEEEccHHHHHHHHcccccccEEEEEEcccccccccccccccEEcccccccccccccEEEEEEccccccccccccHHHHHHHcccccccccccccccccccccccccHHHcccccccEEEEEEEEEEEccccccEEcccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHcccccccccccHHEccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHccccEEEEEcccccccccccccccEEEEEEccccccccEEEEEEEEEEEccccccccccEEEEEEEEEEcccccEEEEEEEEEcccccEEEEEccHHHHHHHcccccccEEEEEEEEcccccccccccHccEcccccccccccccEEEEEEcccccccccccHccccccccccccccccccccccccccccccccccccccccccccccEcEEEcHHHcccccEEEccEEEccEEccccccccccHHHHccccHHHHHHHHHHHcccccccccccccccccccccc
MFKIQCELSFVLFSITVVHAVLSGLYVDNGVDQIIQRTLSTKEKQDVSHDLLNllglplrpkhlfsnatsiegsvPKFLMDIYRsldnprrttrsefnlggkdlqsidesdmimgfssrnhhvsnvrhehgkriwfdvsevppgetivnsELRIYQMINTTADPWLQFTVSIYQVLVDGELEYVdsvnttagsegwMLFNVTGPLvswvaiphsnkglylsvqprekpiheirtediGIVASKVMHLEEKQPFMVAFFKSahggitvrprsrrIRETTKSrkrksmtetsnyrnpytgfsdsmkeaaynshscsiQTLYVNFrdlewqdwiiapdgygafyckqkynsdpfrvnyenipEYKRFLEAKRnlqnvppkpqsLMCWAIHNLEDSN
MFKIQCELSFVLFSITVVHAVLSGLYVDNGVDQIIQRTlstkekqdvSHDLLNLLGLPLRPKHLFSnatsiegsvpkFLMDIYRSLDnprrttrsefnlggkdlqsIDESDMIMGFSSRNHHVSNVRHEHgkriwfdvsevppGETIVNSELRIYQMINTTADPWLQFTVSIYQVLVDGELEYVDSVNTTAGSEGWMLFNVTGPLVSWVAIPHSNKGLYLSVQPREKPIHEIRTEDIGIVASKVMHLEEKQPFMVAFFKsahggitvrprsrrirettksrkrksmtetsnyrnpytGFSDSMKEAAYNSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAKRNLqnvppkpqslMCWAIHNLEDSN
MFKIQCELSFVLFSITVVHAVLSGLYVDNGVDQIIQRTLSTKEKQDVSHDllnllglplrpkhlFSNATSIEGSVPKFLMDIYRSLDNPRRTTRSEFNLGGKDLQSIDESDMIMGFSSRNHHVSNVRHEHGKRIWFDVSEVPPGETIVNSELRIYQMINTTADPWLQFTVSIYQVLVDGELEYVDSVNTTAGSEGWMLFNVTGPLVSWVAIPHSNKGLYLSVQPREKPIHEIRTEDIGIVASKVMHLEEKQPFMVAFFKSAHGGITVRPRSRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIHNLEDSN
**KIQCELSFVLFSITVVHAVLSGLYVDNGVDQIIQRTLSTKEKQDVSHDLLNLLGLPLRPKHLFSNATSIEGSVPKFLMDIYRSL*************************************SNVRHEHGKRIWFDVSEVPPGETIVNSELRIYQMINTTADPWLQFTVSIYQVLVDGELEYVDSVNTTAGSEGWMLFNVTGPLVSWVAIPHSNKGLYLSVQPREKPIHEIRTEDIGIVASKVMHLEEKQPFMVAFFKSAHGGITV***************************************AYNSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAKRNL********SLMCWAIH******
MFKIQCELSFVLFSITVVHAVLSGLY***************************************************FLMDIYRS*****************DLQSIDESDMIMGFSSRNHHVSNVRHEHGKRIWFDVSEVPPGETIVNSELRIYQMINTTADPWLQFTVSIYQVLVDGELEYVDSVNTTAGSEGWMLFNVTGPLVSWVAIPHSNKGLYLSVQPREKPIHEIRTEDI**************PFMVAFFKS***************************************************SCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIHNLE***
MFKIQCELSFVLFSITVVHAVLSGLYVDNGVDQIIQRTLSTKEKQDVSHDLLNLLGLPLRPKHLFSNATSIEGSVPKFLMDIYRSLDNPRRTTRSEFNLGGKDLQSIDESDMIMGFSSRNHHVSNVRHEHGKRIWFDVSEVPPGETIVNSELRIYQMINTTADPWLQFTVSIYQVLVDGELEYVDSVNTTAGSEGWMLFNVTGPLVSWVAIPHSNKGLYLSVQPREKPIHEIRTEDIGIVASKVMHLEEKQPFMVAFFKSAHGGITVRPRSRR***************TSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIHNLEDSN
MFKIQCELSFVLFSITVVHAVLSGLYVDNGVDQIIQRTLSTKEKQDVSHDLLNLLGLPLRPKHLFSNATSIEGSVPKFLMDIYRSLDNP*****SEFNLGGKDLQSIDESDMIMGFSSRNHHVSNVRHEHGKRIWFDVSEVPPGETIVNSELRIYQMINTTADPWLQFTVSIYQVLVDGELEYVDSVNTTAGSEGWMLFNVTGPLVSWVAIPHSNKGLYLSVQPREKPIHEIRTEDIGIVASKVMHLEEKQPFMVAFFKSA*************************************************HSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIHNL****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFKIQCELSFVLFSITVVHAVLSGLYVDNGVDQIIQRTLSTKEKQDVSHDLLNLLGLPLRPKHLFSNATSIEGSVPKFLMDIYRSLDNPRRTTRSEFNLGGKDLQSIDESDMIMGFSSRNHHVSNVRHEHGKRIWFDVSEVPPGETIVNSELRIYQMINTTADPWLQFTVSIYQVLVDGELEYVDSVNTTAGSEGWMLFNVTGPLVSWVAIPHSNKGLYLSVQPREKPIHEIRTEDIGIVASKVMHLEEKQPFMVAFFKSAHGGITVRPRSRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIHNLEDSN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query393 2.2.26 [Sep-21-2011]
Q24735436 Protein 60A OS=Drosophila N/A N/A 0.826 0.745 0.381 5e-65
P27091455 Protein 60A OS=Drosophila yes N/A 0.832 0.718 0.375 4e-62
P23359430 Bone morphogenetic protei yes N/A 0.801 0.732 0.300 2e-37
P18075431 Bone morphogenetic protei yes N/A 0.788 0.719 0.311 2e-37
P22003454 Bone morphogenetic protei no N/A 0.809 0.700 0.283 4e-34
P49003452 Bone morphogenetic protei no N/A 0.768 0.668 0.286 7e-34
P55105399 Bone morphogenetic protei no N/A 0.755 0.744 0.272 2e-31
Q7Z5Y6402 Bone morphogenetic protei no N/A 0.727 0.711 0.286 3e-31
P30886426 Bone morphogenetic protei N/A N/A 0.806 0.744 0.271 4e-31
P34820402 Bone morphogenetic protei no N/A 0.722 0.706 0.291 8e-31
>sp|Q24735|60A_DROVI Protein 60A OS=Drosophila virilis GN=gbb PE=3 SV=1 Back     alignment and function desciption
 Score =  248 bits (633), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 142/372 (38%), Positives = 209/372 (56%), Gaps = 47/372 (12%)

Query: 8   LSFVLFSITVVHAVLSGLYVDNGVDQ-IIQRTLSTKEKQDVSHDLLNLLGLPLRPKHLFS 66
           L  ++F+    H   SG+Y+DNG DQ +++R L+  +K DVSH++L  LG+  RP H  S
Sbjct: 13  LILIIFTAPYTHCTQSGIYIDNGKDQTVMERVLTDDDKLDVSHEILEFLGIAARPLHHKS 72

Query: 67  NATSIEGSVPKFLMDIYRSLD---------------NPRRTTRSEFN-LGGKDLQSIDES 110
           +  S+  S PKFL+D+Y  +                + R    SE N +   D ++IDES
Sbjct: 73  HGLSLRKSAPKFLLDVYYRITAEEGLAIKNKSDHSRSKRDANESEQNFITDLDKRAIDES 132

Query: 111 DMIMGF-SSRNHHVSNVRHEHGKRIWFDVSEVPPGETIVNSELRIYQMINTTADPWL--- 166
           D+IM F + RNH+V  +RHEHG+R+WFDV+ +P    ++ +ELRIYQ  N+    W    
Sbjct: 133 DIIMTFLNKRNHNVEEMRHEHGRRLWFDVNNIPTDNYLMMAELRIYQ--NSNEGKWTTTN 190

Query: 167 -QFTVSIYQVLVDGE----LEYVDSVNTTAGSEGWMLFNVTGPLVSWVAIPHSNKGLYLS 221
            QFTV++Y +   G     LE + SVNTT    GW+  NVT  L  W    + N G+Y+ 
Sbjct: 191 KQFTVTVYMLRSGGSAPNMLEPLSSVNTTGDYVGWLELNVTEALHDWRVNSNENHGIYIG 250

Query: 222 VQPREKPIHEIRTEDIGIVASKVMHLEEKQPFMVAFF------KSAHGGITVRPRSRRIR 275
                KP  EI+ +DIG++  +    +E QPFM+ FF      KS  G  T     +R +
Sbjct: 251 AHALNKPEREIKLDDIGLIHRRTKVDDENQPFMIGFFRGPELIKSTSGHST----QKRTK 306

Query: 276 ETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDLEWQDWIIAPD 335
            +T  +++KS +E     NP+      ++ +  N+ SC +QTLY++F+DL W DWIIAP+
Sbjct: 307 RSTLHQRKKSKSEPV---NPF------IENSIENTRSCQMQTLYIDFKDLGWHDWIIAPE 357

Query: 336 GYGAFYCKQKYN 347
           GYGAFYC  + N
Sbjct: 358 GYGAFYCSGECN 369

Drosophila virilis (taxid: 7244)
>sp|P27091|60A_DROME Protein 60A OS=Drosophila melanogaster GN=gbb PE=1 SV=1 Back     alignment and function description
>sp|P23359|BMP7_MOUSE Bone morphogenetic protein 7 OS=Mus musculus GN=Bmp7 PE=1 SV=2 Back     alignment and function description
>sp|P18075|BMP7_HUMAN Bone morphogenetic protein 7 OS=Homo sapiens GN=BMP7 PE=1 SV=1 Back     alignment and function description
>sp|P22003|BMP5_HUMAN Bone morphogenetic protein 5 OS=Homo sapiens GN=BMP5 PE=2 SV=1 Back     alignment and function description
>sp|P49003|BMP5_MOUSE Bone morphogenetic protein 5 OS=Mus musculus GN=Bmp5 PE=2 SV=1 Back     alignment and function description
>sp|P55105|BMP8B_MOUSE Bone morphogenetic protein 8B OS=Mus musculus GN=Bmp8b PE=2 SV=2 Back     alignment and function description
>sp|Q7Z5Y6|BMP8A_HUMAN Bone morphogenetic protein 8A OS=Homo sapiens GN=BMP8A PE=2 SV=2 Back     alignment and function description
>sp|P30886|BMP7_XENLA Bone morphogenetic protein 7 OS=Xenopus laevis GN=bmp7 PE=1 SV=1 Back     alignment and function description
>sp|P34820|BMP8B_HUMAN Bone morphogenetic protein 8B OS=Homo sapiens GN=BMP8B PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
350425115440 PREDICTED: protein 60A-like [Bombus impa 0.826 0.738 0.484 3e-85
48094723424 PREDICTED: protein 60A [Apis mellifera] 0.826 0.766 0.479 2e-84
340709288440 PREDICTED: protein 60A-like [Bombus terr 0.826 0.738 0.481 2e-84
156543579421 PREDICTED: protein 60A [Nasonia vitripen 0.804 0.750 0.502 5e-84
307185552424 Protein 60A [Camponotus floridanus] 0.844 0.783 0.445 1e-78
242007949380 Univin precursor, putative [Pediculus hu 0.740 0.765 0.501 6e-78
307201602396 Protein 60A [Harpegnathos saltator] 0.793 0.787 0.466 7e-78
332018698421 Protein 60A [Acromyrmex echinatior] 0.829 0.774 0.448 2e-77
383861107377 PREDICTED: protein 60A-like [Megachile r 0.732 0.763 0.496 4e-76
167234380404 glass bottom boat protein precursor [Tri 0.798 0.777 0.456 2e-72
>gi|350425115|ref|XP_003494016.1| PREDICTED: protein 60A-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 175/361 (48%), Positives = 237/361 (65%), Gaps = 36/361 (9%)

Query: 8   LSFVLFSITVVHAV--LSGLYVDNGVDQ-IIQRTLSTKEKQDVSHDLLNLLGLPLRPKHL 64
           L  +L  +T   A   +SGLYVDNG DQ I+ R +S +EK++V H++LNLLGLP RP++ 
Sbjct: 28  LGTILAGLTSTAAADRMSGLYVDNGFDQTIVHRVVSQREKREVEHEILNLLGLPDRPRNT 87

Query: 65  FSNATSIEGSVPKFLMDIYRSL-----------DNPRRTTRSEFNLGGKDLQSIDESDMI 113
                 ++ S PKFL+DIY++            +  RR    EF+L G+DL++ID+SD+I
Sbjct: 88  AGRPPQVKRSAPKFLLDIYKNALGEDEDEKPIGEQQRRA--GEFDLTGQDLRAIDQSDVI 145

Query: 114 MGFSSRNHHVSNVRHEHGKRIWFDVSEVPPGETIVNSELRIYQMINT-TADPWLQFTVSI 172
           M F++ NHHV  VRHE GKR+WFDVSEVPPGE I+++ELR+Y+ ++         + ++ 
Sbjct: 146 MTFAAHNHHVPGVRHERGKRLWFDVSEVPPGEHIISAELRLYRSMDVKNRRNRGSYMITA 205

Query: 173 YQVLV--DG--ELEYVDSVNTTAGSEGWMLFNVTGPLVSWVAIPHSNKGLYLSVQPREKP 228
           Y+VL   DG  EL+YVD+VNTT G EGW+  NV+ PL  WV  P  NKGLYLSV P ++ 
Sbjct: 206 YRVLRTEDGTRELQYVDAVNTTTGKEGWLTLNVSEPLDHWVNNPDGNKGLYLSVHPADRS 265

Query: 229 IHEIRTEDIGIVASKVMHLEEKQPFMVAFFKSAHGGITVRPRSRRIRETTKSRKRKSMTE 288
           +HE+R EDIGIV  +     +KQPFMV +FKS+  GI    R  ++R+   +R+RK    
Sbjct: 266 VHEMRPEDIGIVGFR--GDPDKQPFMVGYFKSS--GI----RESKVRQKRDARRRKKSES 317

Query: 289 TS-NYR-NPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKY 346
           +S +YR NPYT          YNS +C IQTLYV+FRDL+WQDWIIAPDGY A+YC  + 
Sbjct: 318 SSLDYRNNPYTDPG-----VQYNSRTCKIQTLYVSFRDLKWQDWIIAPDGYDAYYCSGEC 372

Query: 347 N 347
           N
Sbjct: 373 N 373

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|48094723|ref|XP_394252.1| PREDICTED: protein 60A [Apis mellifera] Back     alignment and taxonomy information
>gi|340709288|ref|XP_003393243.1| PREDICTED: protein 60A-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|156543579|ref|XP_001603876.1| PREDICTED: protein 60A [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307185552|gb|EFN71514.1| Protein 60A [Camponotus floridanus] Back     alignment and taxonomy information
>gi|242007949|ref|XP_002424777.1| Univin precursor, putative [Pediculus humanus corporis] gi|212508300|gb|EEB12039.1| Univin precursor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307201602|gb|EFN81357.1| Protein 60A [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332018698|gb|EGI59270.1| Protein 60A [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383861107|ref|XP_003706028.1| PREDICTED: protein 60A-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|167234380|ref|NP_001107813.1| glass bottom boat protein precursor [Tribolium castaneum] gi|270008197|gb|EFA04645.1| glass bottom boat [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
FB|FBgn0024234455 gbb "glass bottom boat" [Droso 0.590 0.509 0.398 7.8e-56
UNIPROTKB|P87373453 BMP5 "Uncharacterized protein" 0.585 0.507 0.315 9e-34
UNIPROTKB|P22003454 BMP5 "Bone morphogenetic prote 0.610 0.528 0.321 1.5e-33
UNIPROTKB|E2RNJ0454 BMP5 "Uncharacterized protein" 0.610 0.528 0.321 1.5e-33
UNIPROTKB|F1NUT2433 BMP7 "Uncharacterized protein" 0.587 0.533 0.34 3.8e-33
UNIPROTKB|F1P4B5397 BMP7 "Uncharacterized protein" 0.587 0.581 0.34 3.8e-33
UNIPROTKB|E1BGS3454 BMP5 "Uncharacterized protein" 0.608 0.526 0.332 4.9e-33
ZFIN|ZDB-GENE-050306-42417 bmp6 "bone morphogenetic prote 0.890 0.839 0.284 8.5e-33
RGD|1305979454 Bmp5 "bone morphogenetic prote 0.610 0.528 0.325 1e-32
MGI|MGI:88181452 Bmp5 "bone morphogenetic prote 0.610 0.530 0.325 1.3e-32
FB|FBgn0024234 gbb "glass bottom boat" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 464 (168.4 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
 Identities = 102/256 (39%), Positives = 143/256 (55%)

Query:   103 DLQSIDESDMIMGFSSRNHH-VSNVRHEHGKRIWFDVSEVPPGETIVNSELRIYQMINTT 161
             D ++IDESD+IM F ++ HH V  +RHEHG+R+WFDVS VP    +V +ELRIYQ  N  
Sbjct:   146 DKRAIDESDIIMTFLNKRHHNVDELRHEHGRRLWFDVSNVPNDNYLVMAELRIYQ--NAN 203

Query:   162 ADPWL----QFTVSIYQV----LVDGELEYVDSVNTTAGSEGWMLFNVTGPLVSWVAIPH 213
                WL    +FT+++Y +    L    +E + SVNTT    GW+  NVT  L  W+    
Sbjct:   204 EGKWLTANREFTITVYAIGTGTLGQHTMEPLSSVNTTGDYVGWLELNVTEGLHEWLVKSK 263

Query:   214 SNKGLYLSVQPREKPIHEIRTEDIGIVASKVMHLEEKQPFMVAFFKSAH--GGITVRPRS 271
              N G+Y+      +P  E++ +DIG++  KV   +E QPFM+ FF+              
Sbjct:   264 DNHGIYIGAHAVNRPDREVKLDDIGLIHRKVD--DEFQPFMIGFFRGPELIKATAHSSHH 321

Query:   272 RRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDLEWQDWI 331
             R  R  +  RKRK     +N   P       + E   ++ SC +QTLY++F+DL W DWI
Sbjct:   322 RSKRSASHPRKRKKSVSPNNV--P-------LLEPMESTRSCQMQTLYIDFKDLGWHDWI 372

Query:   332 IAPDGYGAFYCKQKYN 347
             IAP+GYGAFYC  + N
Sbjct:   373 IAPEGYGAFYCSGECN 388
GO:0005576 "extracellular region" evidence=ISS
GO:0005160 "transforming growth factor beta receptor binding" evidence=ISS;NAS
GO:0030509 "BMP signaling pathway" evidence=ISS
GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=NAS
GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP
GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP
GO:0007391 "dorsal closure" evidence=TAS
GO:0008083 "growth factor activity" evidence=IEA
GO:0007274 "neuromuscular synaptic transmission" evidence=IMP
GO:0030707 "ovarian follicle cell development" evidence=IMP
GO:0035222 "wing disc pattern formation" evidence=IMP
GO:0046928 "regulation of neurotransmitter secretion" evidence=IDA
GO:0048636 "positive regulation of muscle organ development" evidence=IGI
GO:0045887 "positive regulation of synaptic growth at neuromuscular junction" evidence=IMP
GO:0007528 "neuromuscular junction development" evidence=IMP
UNIPROTKB|P87373 BMP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P22003 BMP5 "Bone morphogenetic protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RNJ0 BMP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NUT2 BMP7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4B5 BMP7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGS3 BMP5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050306-42 bmp6 "bone morphogenetic protein 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1305979 Bmp5 "bone morphogenetic protein 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:88181 Bmp5 "bone morphogenetic protein 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P2709160A_DROMENo assigned EC number0.37560.83200.7186yesN/A
P18075BMP7_HUMANNo assigned EC number0.31190.78880.7192yesN/A
P23359BMP7_MOUSENo assigned EC number0.30020.80150.7325yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
pfam00688229 pfam00688, TGFb_propeptide, TGF-beta propeptide 5e-38
pfam00019105 pfam00019, TGF_beta, Transforming growth factor be 2e-11
smart00204102 smart00204, TGFB, Transforming growth factor-beta 5e-11
>gnl|CDD|216062 pfam00688, TGFb_propeptide, TGF-beta propeptide Back     alignment and domain information 
 Score =  136 bits (344), Expect = 5e-38
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 17/225 (7%)

Query: 39  LSTKEKQDVSHDLLNLLGLPLRPKHLFSNATSIEGSVPKFLMDIYRSL-DNPRRTTRSEF 97
           L  +  + +   LL+ LGL  RP    S   S    VP++++D+Y S   +    +    
Sbjct: 16  LKQERLEAIESQLLSKLGLKRRPNPSQSLPKS----VPQYMLDLYNSQSADDSGASADLE 71

Query: 98  NLGGKDLQSIDESDMIMGFSSRNHHVSNVRHEHGKRIWFDVSEVPPGETIVNSELRIYQM 157
            L        D ++ +  F+            H KR++F++S +P  E +  +ELR+Y  
Sbjct: 72  ELET----LADRANTVRSFADEEEFELEQVDGHRKRLFFNLSSIPEDELLTAAELRLYLE 127

Query: 158 INTTADPWLQFTVSIYQVLVDG-----ELEYVDSVNTTAGSEGWMLFNVTGPLVSWVAIP 212
               +       VS+Y+VL            +DS +      GW+ F+VT  +  W+  P
Sbjct: 128 PVEESSRSTTVRVSVYRVLKPSGSGEPITRLLDSRSVKISESGWLSFDVTPAVQRWLRQP 187

Query: 213 HSNKGLYLSVQPREKPIHEIRTEDIGIVASKVMHLEEKQPFMVAF 257
            +N GL L V   E    ++     G    + +   + +PF+V F
Sbjct: 188 ETNLGLELEVLDSEG--SDLAPTSAGPGGERHVW-SQLRPFLVVF 229

This propeptide is known as latency associated peptide (LAP) in TGF-beta. LAP is a homodimer which is disulfide linked to TGF-beta binding protein. Length = 229
>gnl|CDD|215660 pfam00019, TGF_beta, Transforming growth factor beta like domain Back     alignment and domain information
>gnl|CDD|214556 smart00204, TGFB, Transforming growth factor-beta (TGF-beta) family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 393
KOG3900|consensus413 100.0
smart00204102 TGFB Transforming growth factor-beta (TGF-beta) fa 99.98
PF00688238 TGFb_propeptide: TGF-beta propeptide; InterPro: IP 99.97
PHA02913172 TGF-beta-like protein; Provisional 99.95
PF00019105 TGF_beta: Transforming growth factor beta like dom 99.94
PF06848182 Disaggr_repeat: Disaggregatase related repeat; Int 98.22
>KOG3900|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.6e-47  Score=379.99  Aligned_cols=327  Identities=23%  Similarity=0.356  Sum_probs=206.9

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCchHHHHHHHHhccCCCCCCc-cCcC-CCCCCccccccCCcccCccccC
Q psy15991         43 EKQDVSHDLLNLLGLPLRPKHLFSNATSIEGSVPKFLMDIYRSLDNPRRTTR-SEFN-LGGKDLQSIDESDMIMGFSSRN  120 (393)
Q Consensus        43 ~~~~~~~~iL~~LgL~~~P~~~~~~~~~~~~~~P~~Ml~LY~~~~~~~~~~~-~~~~-~~~~d~~~i~~ad~Irsf~~~~  120 (393)
                      ..+.++..||.+|.|+.+|.+.      .+.++|.+|+++|+...+...... .... ....+......++++++|....
T Consensus        41 ~~e~~~~~~L~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (413)
T KOG3900|consen   41 RLEALKRLILEKLPLPSAPLFN------KPSSAPLQLLDLLRAGRGEPEESDLERLNSRSEEDLELLASANSVRSFVSLE  114 (413)
T ss_pred             HHHHHhhcchhcccccCccccc------cccccCHHhhhhhhhcccCCcccccccccccccccccccccCCcceeeeccc
Confidence            5677888888888888888774      223899999999999873211100 0000 0112334456678999998752


Q ss_pred             Cc---cccccccCCeEEEEEccCCCCCCeeEEEEEEEEecccCCC----CCCceeE-EEEEEEeeC-----CeeEEEeeE
Q psy15991        121 HH---VSNVRHEHGKRIWFDVSEVPPGETIVNSELRIYQMINTTA----DPWLQFT-VSIYQVLVD-----GELEYVDSV  187 (393)
Q Consensus       121 ~~---~~~~~~~~~~~~~F~ls~i~~~e~v~~AeLrly~~~~~~~----~~~~~~~-v~vy~v~~~-----~~~~ll~s~  187 (393)
                      ..   ...........+.|+++.++..+.+..||||+|+......    ..+.... |.+|++...     ....+++++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (413)
T KOG3900|consen  115 LSRLSLDGNSELHFGDLLFDLRSIPSWEALPAAELRLYRRPVPDKLISAEANESLEELSPYDVLSSPLGRANDARLLSSR  194 (413)
T ss_pred             ccceecCCcccccchhhhcccccccchhhccccceeeecccccccccccccCcceeEEEeeeeccccccCCCceeecccc
Confidence            21   1111111226778888889999999999999998876442    2233333 888886554     456778888


Q ss_pred             EeecCCCceEEEEcchhhHhhhhCCCCCceeEEEEEecCCCCcccccccccccccccCCCCCCccEEEEEEcCCCCCCCC
Q psy15991        188 NTTAGSEGWMLFNVTGPLVSWVAIPHSNKGLYLSVQPREKPIHEIRTEDIGIVASKVMHLEEKQPFMVAFFKSAHGGITV  267 (393)
Q Consensus       188 ~v~~~~~gW~~fdVT~~v~~W~~~~~~n~gl~v~v~~~~~~~~~v~~~~~~~~~~~~~~~~~~~PfLV~~~~~~~~~~~~  267 (393)
                      .+.....||+.||||.+++.|...+..+.|+++.+.....+.........+...... .....++++.............
T Consensus       195 ~~~~~~~~W~~fdvt~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  273 (413)
T KOG3900|consen  195 LVALRLSGWIQFDVTSLVKRWALLSLSNLGLELQAEVVDRPLDPLLELSHLLLGRAG-TPGALQLLLSAKPPASEKDPDL  273 (413)
T ss_pred             ceecCCCccEEeeHHHHHHHHHhcccccCceeEEEEeccccccccccccceeeeecC-Cccccchhhhhccccccccccc
Confidence            888888889999999999999998889999999998765421111000111111111 1223333433222211100000


Q ss_pred             CC--C-cccccccccccccccccccCCCCCCCCCCCcchhhcccCCCCceEEeeeEeeecCCccceEEcCCccccceeee
Q psy15991        268 RP--R-SRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQ  344 (393)
Q Consensus       268 ~~--r-~~r~~~~~~rR~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~C~r~~LyVdF~dlGW~dWIIAP~gY~A~yC~G  344 (393)
                      ..  . ..+.....+.+...........+.         ..+....+.|||++|||||++|||+||||||+||+||||+|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Ccr~~lyV~F~~lGW~dWIIaP~gy~A~yC~G  344 (413)
T KOG3900|consen  274 ELSTLPSRRRELRLRPRQRHDRRRRRARRG---------RNCEGARNRCCRRPLYVDFRDLGWDDWIIAPKGYDANYCSG  344 (413)
T ss_pred             cccccccccccccccccccccchhcccccc---------ccCCCCCCceeccceEeehhhcCCcceEeCCCcccCceecC
Confidence            00  0 000000000000000000000000         01344567899999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCccccccCCC
Q psy15991        345 KYNSDPFRVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIHNLED  391 (393)
Q Consensus       345 ~Cp~pl~~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPtkl~~  391 (393)
                      +||||+.++++||||++|+++|++.      |.++++||||||||++
T Consensus       345 ~C~~p~~~~~~tnHa~vq~l~~~~~------p~~~p~pCCvPtklsp  385 (413)
T KOG3900|consen  345 TCPFPLADHAATNHAIVQTLVHAVN------PEPVPKPCCVPTKLSP  385 (413)
T ss_pred             cCCCchhhcCCcchHHHHHHHHhhC------CCCCCCCccccCccCc
Confidence            9999998799999999999999774      4457889999999984

>smart00204 TGFB Transforming growth factor-beta (TGF-beta) family Back     alignment and domain information
>PF00688 TGFb_propeptide: TGF-beta propeptide; InterPro: IPR001111 The transforming growth factor beta, N terminus (TGFb) domain is present in a variety of proteins which include the transforming growth factor beta, decapentaplegic proteins and bone morphogenetic proteins Back     alignment and domain information
>PHA02913 TGF-beta-like protein; Provisional Back     alignment and domain information
>PF00019 TGF_beta: Transforming growth factor beta like domain; InterPro: IPR001839 Transforming growth factor-beta (TGF-beta) is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types Back     alignment and domain information
>PF06848 Disaggr_repeat: Disaggregatase related repeat; InterPro: IPR010671 This entry describes several repeats which seem to be specific to the Methanosarcina archaea species and are often found in multiple copies in disaggregatase proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
1m4u_L139 Crystal Structure Of Bone Morphogenetic Protein-7 ( 1e-08
2r53_A116 Crystal Structure Analysis Of Bone Morphogenetic Pr 4e-07
2qcw_A132 Crystal Structure Of Bone Morphogenetic Protein-6 ( 8e-07
2r52_A143 Crystal Structure Analysis Of Bone Morphogenetic Pr 9e-07
1es7_A116 Complex Between Bmp-2 And Two Bmp Receptor Ia Ectod 9e-07
1reu_A103 Structure Of The Bone Morphogenetic Protein 2 Mutan 1e-06
3bmp_A114 Human Bone Morphogenetic Protein-2 (Bmp-2) Length = 1e-06
2h64_A114 Crystal Structure Of A Ternary Ligand-Receptor Comp 1e-06
3bk3_A114 Crystal Structure Of The Complex Of Bmp-2 And The F 5e-06
1waq_A117 Crystal Structure Of Human Growth And Differentiati 1e-05
2bhk_A120 Crystal Structure Of Human Growth And Differentiati 1e-05
3qb4_A117 Crystal Structure Of A Tgf-Beta Ligand-Receptor Com 1e-05
1nys_B116 Crystal Structure Of Activin A Bound To The Ecd Of 3e-05
1zkz_A110 Crystal Structure Of Bmp9 Length = 110 3e-04
>pdb|1M4U|L Chain L, Crystal Structure Of Bone Morphogenetic Protein-7 (bmp-7) In Complex With The Secreted Antagonist Noggin Length = 139 Back     alignment and structure 
Iteration: 1

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
Query: 303 MKEAAYNSHS-----CSIQTLYVNFRDLEWQDWIIAPDGYGAFYCK 343
           M   A NS S     C    LYV+FRDL WQDWIIAP+GY A+YC+
Sbjct: 23  MANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCE 68
>pdb|2R53|A Chain A, Crystal Structure Analysis Of Bone Morphogenetic Protein-6 Variant B2 (b2-bmp-6) Length = 116 Back     alignment and structure
>pdb|2QCW|A Chain A, Crystal Structure Of Bone Morphogenetic Protein-6 (Bmp-6) Length = 132 Back     alignment and structure
>pdb|2R52|A Chain A, Crystal Structure Analysis Of Bone Morphogenetic Protein-6 (Bmp-6) Length = 143 Back     alignment and structure
>pdb|1ES7|A Chain A, Complex Between Bmp-2 And Two Bmp Receptor Ia Ectodomains Length = 116 Back     alignment and structure
>pdb|1REU|A Chain A, Structure Of The Bone Morphogenetic Protein 2 Mutant L51p Length = 103 Back     alignment and structure
>pdb|3BMP|A Chain A, Human Bone Morphogenetic Protein-2 (Bmp-2) Length = 114 Back     alignment and structure
>pdb|2H64|A Chain A, Crystal Structure Of A Ternary Ligand-Receptor Complex Of Bmp-2 Length = 114 Back     alignment and structure
>pdb|3BK3|A Chain A, Crystal Structure Of The Complex Of Bmp-2 And The First Von Willebrand Domain Type C Of Crossveinless-2 Length = 114 Back     alignment and structure
>pdb|1WAQ|A Chain A, Crystal Structure Of Human Growth And Differentiation Factor 5 (Gdf-5) Length = 117 Back     alignment and structure
>pdb|2BHK|A Chain A, Crystal Structure Of Human Growth And Differentiation Factor 5 (Gdf5) Length = 120 Back     alignment and structure
>pdb|3QB4|A Chain A, Crystal Structure Of A Tgf-Beta Ligand-Receptor Complex Length = 117 Back     alignment and structure
>pdb|1NYS|B Chain B, Crystal Structure Of Activin A Bound To The Ecd Of Actriib P41 Length = 116 Back     alignment and structure
>pdb|1ZKZ|A Chain A, Crystal Structure Of Bmp9 Length = 110 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
3rjr_A363 Transforming growth factor beta-1; TGF beta, activ 2e-31
2r52_A143 BMP-6, bone morphogenetic protein 6; TGF-beta liga 6e-14
1lxi_A139 Bone morphogenetic protein 7; cystine-knot growth 7e-13
2qcq_A110 Bone morphogenetic protein 3; BMP, TGF-beta, signa 2e-12
2arp_A116 Inhibin beta A chain; cystine knot, disulfide rich 3e-12
1zkz_A110 Growth/differentiation factor 2; glycoprotein, gro 4e-12
3evs_B117 Growth/differentiation factor 5; ligand-receptor c 7e-12
2h62_A114 BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-b 1e-11
2tgi_A112 Transforming growth factor ,beta 2; 1.80A {Homo sa 2e-10
3hh2_A109 Growth/differentiation factor 8; protein-protein c 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa} Length = 363 Back     alignment and structure
 Score =  121 bits (304), Expect = 2e-31
 Identities = 55/323 (17%), Positives = 109/323 (33%), Gaps = 45/323 (13%)

Query: 33  QIIQRTLSTKEK-QDVSHDLLNLLGLPLRPKHLFSNATSIEGSVPKFLMDIYRSL-DNPR 90
           + I   L  +++ + +   +L+ L L   P           G +P+ ++ +Y S  D   
Sbjct: 7   KTIDMELVKRKRIEAIRGQILSKLRLASPPSQ----GDVPPGPLPEAVLALYNSTRDRVA 62

Query: 91  RTTRSEFNLGGKDLQSIDESDMIMGFSSRNHHVSNVRHEHGKRIWFDVSE----VPPGET 146
             +         D  + + + ++M  S    +       H   + F+ SE    VP    
Sbjct: 63  GESVEPEPEPEADYYAKEVTRVLMVESGNQIYDKFKGTPHSLYMLFNTSELREAVPEPVL 122

Query: 147 IVNSELRIYQMINTTADPWLQFTVSIYQVLVDGELEYVDS-VNTTAGSEGWMLFNVTGPL 205
           +  +ELR+ ++        ++  V +YQ        Y+ + +   + S  W+ F+VTG +
Sbjct: 123 LSRAELRLLRL-----KLKVEQHVELYQKYSQDSWRYLSNRLLAPSDSPEWLSFDVTGVV 177

Query: 206 VSWVAIPHSNKGLYLSVQ-PREKPIHEIRTEDIGIV----ASKVMHLEEKQPFMVAFFKS 260
             W+    + +G  LS     +   + +  E  G                +PF++     
Sbjct: 178 RQWLTRREAIEGFRLSAHCSCDSKDNTLHVEINGFNSGRRGDLATIHGMNRPFLLLMATP 237

Query: 261 AHGGITVRPRSRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYV 320
                 +     R    T      +                          +C ++ LY+
Sbjct: 238 LERAQHLHSSRHRRALDTNYCFSST------------------------EKNCCVRQLYI 273

Query: 321 NFRDLEWQDWIIAPDGYGAFYCK 343
           +FR      WI  P GY A +C 
Sbjct: 274 DFRKDLGWKWIHEPKGYHANFCL 296
>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand, chondrogenesis, cleavage on PAIR of basic residues, cytokine, developmental protein; 2.50A {Homo sapiens} Length = 143 Back     alignment and structure
>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor, hormone-growth factor complex; HET: NAG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L* 2qcw_A 2r53_A Length = 139 Back     alignment and structure
>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein; 2.21A {Homo sapiens} Length = 110 Back     alignment and structure
>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain, kazal domain, PROT complex, hormone-growth factor complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A* Length = 116 Back     alignment and structure
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens} Length = 110 Back     alignment and structure
>3evs_B Growth/differentiation factor 5; ligand-receptor complex, cystin-knot ligand, three-finger to (receptor); 2.10A {Homo sapiens} PDB: 1waq_A 3qb4_A 2bhk_A Length = 117 Back     alignment and structure
>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily, ligand-receptor complex, hormone/growth factor complex; 1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A 3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A Length = 114 Back     alignment and structure
>2tgi_A Transforming growth factor ,beta 2; 1.80A {Homo sapiens} SCOP: g.17.1.2 PDB: 1tfg_A 1tgj_A 1ktz_A 1tgk_A 2pjy_A 3eo1_C 1kla_A 1klc_A 1kld_A 3kfd_A Length = 112 Back     alignment and structure
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, CLE PAIR of basic residues, cytokine; HET: CIT; 2.15A {Mus musculus} PDB: 3sek_B* Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
3rjr_A363 Transforming growth factor beta-1; TGF beta, activ 100.0
1zkz_A110 Growth/differentiation factor 2; glycoprotein, gro 100.0
3evs_B117 Growth/differentiation factor 5; ligand-receptor c 100.0
2r52_A143 BMP-6, bone morphogenetic protein 6; TGF-beta liga 100.0
2h62_A114 BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-b 100.0
2qcq_A110 Bone morphogenetic protein 3; BMP, TGF-beta, signa 100.0
1lxi_A139 Bone morphogenetic protein 7; cystine-knot growth 100.0
2arp_A116 Inhibin beta A chain; cystine knot, disulfide rich 99.98
2tgi_A112 Transforming growth factor ,beta 2; 1.80A {Homo sa 99.97
3hh2_A109 Growth/differentiation factor 8; protein-protein c 99.95
2ask_A113 Artemin; glial cell derived family ligand, neurotr 99.92
1agq_A135 GDNF, glial cell-derived neurotrophic factor; grow 99.91
>3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa} Back     alignment and structure
Probab=100.00  E-value=3e-63  Score=483.27  Aligned_cols=319  Identities=20%  Similarity=0.336  Sum_probs=214.4

Q ss_pred             ccccCccch-hhccccChHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCchHHHHHHHHhccCCCCC-Cc-cCcC-CC
Q psy15991         25 LYVDNGVDQ-IIQRTLSTKEKQDVSHDLLNLLGLPLRPKHLFSNATSIEGSVPKFLMDIYRSLDNPRRT-TR-SEFN-LG  100 (393)
Q Consensus        25 ~~~~~~~~~-~~~~~~~~~~~~~~~~~iL~~LgL~~~P~~~~~~~~~~~~~~P~~Ml~LY~~~~~~~~~-~~-~~~~-~~  100 (393)
                      ++++++.|. .+.+    ..+++|+++||++|||+++|++..    ..+..+|+|||+||+++.+.... .. .+.+ ..
T Consensus         3 ~~~~~~~d~~~~k~----~~ieai~~~iLsklgL~~~P~~~~----~~~~~vP~~ml~LYnst~~l~~~~~~~~~~~~e~   74 (363)
T 3rjr_A            3 LSTSKTIDMELVKR----KRIEAIRGQILSKLRLASPPSQGD----VPPGPLPEAVLALYNSTRDRVAGESVEPEPEPEA   74 (363)
T ss_dssp             CHHHHHHHHHHHHH----HHHHHHHHHHHHHHTCSSCCCTTS----SCCSCCCHHHHHHHHHHHSCCEEC-------CCC
T ss_pred             cccccCCCHHHHHH----HHHHHHHHHHHHHhCCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHhccccccCcCCccc
Confidence            455666666 3322    235999999999999999999841    25678999999999998742111 00 0100 11


Q ss_pred             CCCccccccCCcccCccccCCccccccccCCeEEEEEccCCCC----CCeeEEEEEEEEecccCCCCCCceeEEEEEEEe
Q psy15991        101 GKDLQSIDESDMIMGFSSRNHHVSNVRHEHGKRIWFDVSEVPP----GETIVNSELRIYQMINTTADPWLQFTVSIYQVL  176 (393)
Q Consensus       101 ~~d~~~i~~ad~Irsf~~~~~~~~~~~~~~~~~~~F~ls~i~~----~e~v~~AeLrly~~~~~~~~~~~~~~v~vy~v~  176 (393)
                      ++-.+.+...|||++|.+.++.... .. +...|+||+|+|+.    +|.|++||||||+...     +...+|+||+..
T Consensus        75 ~y~akev~~~~~~~~~~e~~~~~~~-~~-~~~~f~FnlS~ip~~~~~~e~l~~AELRlyk~~~-----~~~~rI~vYq~~  147 (363)
T 3rjr_A           75 DYYAKEVTRVLMVESGNQIYDKFKG-TP-HSLYMLFNTSELREAVPEPVLLSRAELRLLRLKL-----KVEQHVELYQKY  147 (363)
T ss_dssp             CSSCEEEEEEECCCSSTTTTTTTCC-CT-TEEEEEECHHHHHHHSSSTTTCCEEEEEEEBCCT-----TCCEEEEEEEEC
T ss_pred             ceeceeeeeeccccccccccccccC-Cc-ceEEEEEECccCcccCCCcceeeeeEEEeEecCC-----CceEEEEEEecC
Confidence            1112234445788888654322211 12 23799999999965    6789999999998632     356899999965


Q ss_pred             eCCeeEEEeeEEeecC-CCceEEEEcchhhHhhhhCCCCCceeEEEEEecCC-CCccccccccccc-ccccCCC---CCC
Q psy15991        177 VDGELEYVDSVNTTAG-SEGWMLFNVTGPLVSWVAIPHSNKGLYLSVQPREK-PIHEIRTEDIGIV-ASKVMHL---EEK  250 (393)
Q Consensus       177 ~~~~~~ll~s~~v~~~-~~gW~~fdVT~~v~~W~~~~~~n~gl~v~v~~~~~-~~~~v~~~~~~~~-~~~~~~~---~~~  250 (393)
                      .....++|+++.|... .+||++||||.||+.|+.+++.|+||+|.|.+... .+..+.+...|.. ..+++..   ...
T Consensus       148 ~~~~~rlLdsr~v~~~~~~gW~sFDVt~aV~~Wl~~~~~n~GL~v~v~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~  227 (363)
T 3rjr_A          148 SQDSWRYLSNRLLAPSDSPEWLSFDVTGVVRQWLTRREAIEGFRLSAHCSCDSKDNTLHVEINGFNSGRRGDLATIHGMN  227 (363)
T ss_dssp             SSSCEEEEEEEEECCCSSCCEEEEECHHHHHHHHHCCCSCEEEEEEECEEEEEETTEEEEEECC-------CSBCCSSSS
T ss_pred             CCCceEEEEEEEecCCCCCCEEEEECHHHHHHHHhCCCcCcceEEEEeecCCCCCcccceeeccccccccCccccccccC
Confidence            4456789999999887 78999999999999999999999999999874311 0122222223332 1111111   579


Q ss_pred             ccEEEEEEcCCCCCCCCCCCcccccccccccccccccccCCCCCCCCCCCcchhhcccCCCCceEEeeeEeee-cCCccc
Q psy15991        251 QPFMVAFFKSAHGGITVRPRSRRIRETTKSRKRKSMTETSNYRNPYTGFSDSMKEAAYNSHSCSIQTLYVNFR-DLEWQD  329 (393)
Q Consensus       251 ~PfLV~~~~~~~~~~~~~~r~~r~~~~~~rR~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~C~r~~LyVdF~-dlGW~d  329 (393)
                      +||||+|+.+..       +.  . +.+++|+++....  ..|            .......|||++|||||+ |||| |
T Consensus       228 ~PfLv~~~~~~~-------~~--~-~~~~~r~kr~~~~--~~c------------~~~~~~~Ccr~~~~VdF~~dlGW-~  282 (363)
T 3rjr_A          228 RPFLLLMATPLE-------RA--Q-HLHSSRHRRALDT--NYC------------FSSTEKNCCVRQLYIDFRKDLGW-K  282 (363)
T ss_dssp             CSEEEEEECCHH-------HH--H-C--------CBCT--TTT------------TTSCCCSSEEECCEEEHHHHHCC-C
T ss_pred             CcEEEEEecccc-------cc--c-ccccccccccccc--ccc------------cccccCCccccceEEEeecccCc-c
Confidence            999999996531       00  0 0011121111100  001            112356899999999996 9999 6


Q ss_pred             eEEcCCccccceeeeccCCCCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCccccccCCC
Q psy15991        330 WIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIHNLED  391 (393)
Q Consensus       330 WIIAP~gY~A~yC~G~Cp~pl~~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPtkl~~  391 (393)
                      |||||+||+||||.|+||+|+.  ++||||++|++++.+.      |..++.||||||+|++
T Consensus       283 WIiaP~gy~a~yC~G~C~~~~~--~~t~ha~v~~l~~~~~------p~~~~~pCCvPt~l~~  336 (363)
T 3rjr_A          283 WIHEPKGYHANFCLGPCPYIWS--LDTQYSKVLALYNQHN------PGASAAPCCVPQALEP  336 (363)
T ss_dssp             SEEECSEEECCEEESCCCCTTT--SCSCCHHHHHHTSSCC------SSSSSSCCEEECSEEE
T ss_pred             eecCCCcccceEeeeeCCCCcc--CCCchHHHHHHHHhcC------CCcCCCCccccccccc
Confidence            9999999999999999999997  4899999999987432      3456789999999974
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens} Back     alignment and structure
>3evs_B Growth/differentiation factor 5; ligand-receptor complex, cystin-knot ligand, three-finger to (receptor); 2.10A {Homo sapiens} SCOP: g.17.1.0 PDB: 1waq_A 3qb4_A 2bhk_A Back     alignment and structure
>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand, chondrogenesis, cleavage on PAIR of basic residues, cytokine, developmental protein; 2.50A {Homo sapiens} Back     alignment and structure
>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily, ligand-receptor complex, hormone/growth factor complex; 1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A 3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A Back     alignment and structure
>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein; 2.21A {Homo sapiens} Back     alignment and structure
>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor, hormone-growth factor complex; HET: NAG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L* 2qcw_A 2r53_A Back     alignment and structure
>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain, kazal domain, PROT complex, hormone-growth factor complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A* Back     alignment and structure
>2tgi_A Transforming growth factor ,beta 2; 1.80A {Homo sapiens} SCOP: g.17.1.2 PDB: 1tfg_A 1tgj_A 1ktz_A 1tgk_A 2pjy_A 3eo1_C 1kla_A 1klc_A 1kld_A 3kfd_A Back     alignment and structure
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, CLE PAIR of basic residues, cytokine; HET: CIT; 2.15A {Mus musculus} SCOP: g.17.1.0 PDB: 3sek_B* Back     alignment and structure
>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth factor, sulfates, hormone/growth factor complex; 1.55A {Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C* Back     alignment and structure
>1agq_A GDNF, glial cell-derived neurotrophic factor; growth factor, cystine knot; 1.90A {Rattus norvegicus} SCOP: g.17.1.2 PDB: 3fub_B* 2v5e_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 393
d2arpa1116 g.17.1.2 (A:1-116) Activin A (Inhibin beta A) {Hum 4e-13
d2h62a1103 g.17.1.2 (A:12-114) Bone morphogenetic protein-2 ( 5e-12
d1lxia_104 g.17.1.2 (A:) Bone morphogenetic protein-7 (BMP-7) 1e-11
d2tgia_112 g.17.1.2 (A:) TGF-beta2 {Human (Homo sapiens) [Tax 7e-10
d1agqa_97 g.17.1.2 (A:) Glial cell-derived neurotrophic fact 2e-07
>d2arpa1 g.17.1.2 (A:1-116) Activin A (Inhibin beta A) {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: Activin A (Inhibin beta A)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (153), Expect = 4e-13
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 309 NSHSCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPFRVNYENIPEYKRFLEAK 368
             + C  +  +V+F+D+ W DWIIAP GY A YC+ +  S        +   +   +   
Sbjct: 7   KVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPS-HIAGTSGSSLSFHSTVINH 65

Query: 369 RNLQNVPPKPQSLMC 383
             ++   P      C
Sbjct: 66  YRMRGHSPFANLKSC 80
>d2h62a1 g.17.1.2 (A:12-114) Bone morphogenetic protein-2 (BMP-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1lxia_ g.17.1.2 (A:) Bone morphogenetic protein-7 (BMP-7) {Human (Homo sapiens) [TaxId: 9606]} Length = 104 Back     information, alignment and structure
>d2tgia_ g.17.1.2 (A:) TGF-beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 112 Back     information, alignment and structure
>d1agqa_ g.17.1.2 (A:) Glial cell-derived neurotrophic factor, GDNF {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
d1lxia_104 Bone morphogenetic protein-7 (BMP-7) {Human (Homo 100.0
d2h62a1103 Bone morphogenetic protein-2 (BMP-2) {Human (Homo 99.98
d2tgia_112 TGF-beta2 {Human (Homo sapiens) [TaxId: 9606]} 99.96
d2arpa1116 Activin A (Inhibin beta A) {Human (Homo sapiens) [ 99.96
d1agqa_97 Glial cell-derived neurotrophic factor, GDNF {Rat 99.91
>d1lxia_ g.17.1.2 (A:) Bone morphogenetic protein-7 (BMP-7) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: Bone morphogenetic protein-7 (BMP-7)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-35  Score=231.87  Aligned_cols=74  Identities=36%  Similarity=0.706  Sum_probs=67.9

Q ss_pred             CceEEeeeEeeecCCccceEEcCCccccceeeeccCCCCC-CCCCCChHHHHHHHHHHhcCCCCCCCCCCCCccccccCC
Q psy15991        312 SCSIQTLYVNFRDLEWQDWIIAPDGYGAFYCKQKYNSDPF-RVNYENIPEYKRFLEAKRNLQNVPPKPQSLMCWAIHNLE  390 (393)
Q Consensus       312 ~C~r~~LyVdF~dlGW~dWIIAP~gY~A~yC~G~Cp~pl~-~~~~tNHA~~qs~v~~l~~~~~vp~~~~~~pCCvPtkl~  390 (393)
                      .|||++|||||+||||+||||||+||+||||.|.|++|++ ++++||||++|++++.+.      +..++.||||||+|+
T Consensus         2 ~C~r~~~~V~F~~lGW~~WIi~P~~y~a~~C~G~C~~p~~~~~~~~~ha~i~~~~~~~~------~~~~~~pCC~Pt~~~   75 (104)
T d1lxia_           2 ACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFIN------PETVPKPCCAPTQLN   75 (104)
T ss_dssp             BSEEECCEEEHHHHTCTTTEEECSEEECCEEESBCCSSCCGGGCCCHHHHHHHHHHHHC------TTTCCCCCEEEEEEE
T ss_pred             CceeeeeEEEeeecCCcceEEccCccccEECcCCCCCcccccCCCCchhhhhhhhhhcC------CCCCCCCcccccccc
Confidence            5999999999999999999999999999999999999999 599999999999999874      234567899999997


Q ss_pred             C
Q psy15991        391 D  391 (393)
Q Consensus       391 ~  391 (393)
                      +
T Consensus        76 ~   76 (104)
T d1lxia_          76 A   76 (104)
T ss_dssp             E
T ss_pred             C
Confidence            5
>d2h62a1 g.17.1.2 (A:12-114) Bone morphogenetic protein-2 (BMP-2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2tgia_ g.17.1.2 (A:) TGF-beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2arpa1 g.17.1.2 (A:1-116) Activin A (Inhibin beta A) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1agqa_ g.17.1.2 (A:) Glial cell-derived neurotrophic factor, GDNF {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure