Psyllid ID: psy16002

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MLETYKVLLHTLQDRPDDKAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIARYNSKERNTS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHEEEEEccccccccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MLETYKVLLHTLQDRPDDKAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAiseapkvpkssseARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELtqhagdtddkSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIARYnskernts
Flexible Loop (DISEMBL)
MLETYKVLLhtlqdrpddkAEMQLLLNNIDKLDKERASIGNTTVKLESyhvaiseapkvpkssseaRKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELtqhagdtddksvENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSfekgkkksqsRLKRLENEIVImserhatqvqhLKQRIVSLEEhiarynskernts
Low Complexity Region (SEG)
MLETYKVLLHTLQDRPDDKAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIARYNSKERNTS
Disordered region (IsUnstruct)
******VLL**************LLLNNID********IGNTTVKLESYHVA*************************************LRARIYNLEHEKDVLEMKLNSLAC*******************************************************************************IVI********VQHLKQRIVSL***************
Disordered Region (DISOPRED)
**ETYKVLL****************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MLETYKVLLHTLQDRPDDKAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISE*********EARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFE*********LKRLENEIVIMSERHATQVQHLKQRIVSLEEHIARY********
Disordered Region (DISPRO)
MLETYKVLLHTLQDRPDDKAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISE**********ARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHI***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLETYKVLLHTLQDRPDDKAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxELTQHAGDTDDKSVxxxxxxxxxxxxxxxxxxxxxYELRQMQSTQLTNELKMANNALxxxxxxxxxxxxxxxxxxxxxxxxxxxxHATQxxxxxxxxxxxxxxxxxxxxxERNTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
P23508	829	Colorectal mutant cancer	no	N/A	0.895	0.247	0.319	6e-16

>sp|P23508|CRCM_HUMAN Colorectal mutant cancer protein OS=Homo sapiens GN=MCC PE=1 SV=2

 Score = 84.3 bits (207), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 136/266 (51%), Gaps = 61/266 (22%)

Query: 19  KAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQ 78
           K + Q L + I +L  +RA++  T ++LES H+        P+  S+  ++DLE AVLMQ
Sbjct: 563 KEDEQRLKDYIQQLKNDRAAVKLTMLELESIHIDPLSYDVKPRGDSQ--RLDLENAVLMQ 620

Query: 79  ELLSMRED----KAEL---------------------RARIYNLEHEKDVLE-------- 105
           EL++M+E+    KA+L                     +A + ++EH K  +E        
Sbjct: 621 ELMAMKEEMAELKAQLYLLEKEKKALELKLSTREAQEQAYLVHIEHLKSEVEEQKEQRMR 680

Query: 106 ------------------------MKLNSL--ACEELTQHAGDTDDKSVENKLRERLKEM 139
                                   + L  L   C E    A  T+    E KL+ R++E+
Sbjct: 681 SLSSTSSGSKDKPGKECADAASPALSLAELRTTCSENELAAEFTNAIRREKKLKARVQEL 740

Query: 140 SQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSER 199
              LER++++ E+R  QS +  N+LK AN+ L+ ++EK KKK Q++LK+LE++++ M ER
Sbjct: 741 VSALERLTKSSEIRHQQSAEFVNDLKRANSNLVAAYEKAKKKHQNKLKKLESQMMAMVER 800

Query: 200 HATQVQHLKQRIVSLEEHIARYNSKE 225
           H TQV+ LKQRI  LEE  +R ++ E
Sbjct: 801 HETQVRMLKQRIALLEEENSRPHTNE 826


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.124    0.317 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,305,516
Number of Sequences: 539616
Number of extensions: 2643186
Number of successful extensions: 14471
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 1121
Number of HSP's that attempted gapping in prelim test: 13139
Number of HSP's gapped (non-prelim): 2337
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)

Candidate for the putative colorectal tumor suppressor gene located at 5q21. Suppresses cell proliferation and the Wnt/b-catenin pathway in colorectal cancer cells. Inhibits DNA binding of b-catenin/TCF/LEF transcription factors. Involved in cell migration independently of RAC1, CDC42 and p21-activated kinase (PAK) activation.
Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
383858575	848	PREDICTED: colorectal mutant cancer prot	0.873	0.235	0.438	3e-36
340725545	848	PREDICTED: colorectal mutant cancer prot	0.873	0.235	0.426	9e-36
380024176	906	PREDICTED: LOW QUALITY PROTEIN: colorect	0.873	0.220	0.434	9e-36
350415270	848	PREDICTED: colorectal mutant cancer prot	0.873	0.235	0.426	1e-35
328783241	849	PREDICTED: colorectal mutant cancer prot	0.873	0.235	0.434	1e-35
332027732	693	Colorectal mutant cancer protein [Acromy	0.864	0.285	0.435	1e-34
307193500	447	Colorectal mutant cancer protein [Harpeg	0.864	0.442	0.438	2e-34
307182751	866	Colorectal mutant cancer protein [Campon	0.864	0.228	0.425	4e-34
322788540	575	hypothetical protein SINV_01393 [Solenop	0.790	0.314	0.428	1e-30
321479330	954	hypothetical protein DAPPUDRAFT_309841 [	0.812	0.194	0.393	7e-26

>gi|383858575|ref|XP_003704776.1| PREDICTED: colorectal mutant cancer protein-like [Megachile rotundata]

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/237 (43%), Positives = 142/237 (59%), Gaps = 37/237 (15%)

Query: 23  QLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQELLS 82
           Q L  +I +L  ERA + +T V+LES H     + K   S +EARK+DLE AVLMQEL++
Sbjct: 597 QRLRRHISRLKGERAMVRSTAVELESVHAEPLNS-KNTISLAEARKLDLETAVLMQELMA 655

Query: 83  MREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHA---------------------- 120
           MREDKAELRAR++ LE E+  +E+KLN+   +   QHA                      
Sbjct: 656 MREDKAELRARVFLLEKERATIELKLNARDTQIAAQHAAIEHLQGQLSDTEAMLAMATNK 715

Query: 121 --GDTDDKS------------VENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKM 166
             G +D++S             E +L+ERL+E+  TL++V++  ELR  QS +L N+LK 
Sbjct: 716 DRGLSDNESEGMESELIEALGREARLKERLQELVSTLDKVNKNSELRHQQSAELVNDLKR 775

Query: 167 ANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIARYNS 223
           AN AL+ + EK KKK QSRLK+LE +++ M ERHA QV+ LKQRI  LEE  A Y +
Sbjct: 776 ANGALVQTLEKSKKKYQSRLKKLEQQMLSMVERHAAQVKSLKQRIALLEEESAGYKT 832

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725545|ref|XP_003401129.1| PREDICTED: colorectal mutant cancer protein-like [Bombus terrestris]

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 101/237 (42%), Positives = 140/237 (59%), Gaps = 37/237 (15%)

Query: 23  QLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQELLS 82
           Q L  +I +L  ERA + +T V+LES H     + K   S +EARK+DLE AVLMQEL++
Sbjct: 597 QRLRRHISRLKGERAMVRSTVVELESVHAEPLNS-KNTISLAEARKLDLETAVLMQELMA 655

Query: 83  MREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAG--------------------- 121
           MREDKAELRAR++ LE E+  +E+KLN+   +   QHA                      
Sbjct: 656 MREDKAELRARVFLLEKERATIELKLNARDTQIAAQHAAIEHLQGQLSDTEAMLAMATNK 715

Query: 122 -----DTDDKSVEN----------KLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKM 166
                D + + +E+          +L+ERL+E+  TL++V++  ELR  QS +L N+LK 
Sbjct: 716 DRGLSDNESEGIESELIEALGREARLKERLQELVSTLDKVNKNSELRHQQSAELVNDLKR 775

Query: 167 ANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIARYNS 223
           AN AL+ + EK KKK QSRLK+LE +++ M ERHA QV+ LKQRI  LEE    Y +
Sbjct: 776 ANGALVQTLEKSKKKYQSRLKKLEQQMLGMVERHAAQVKSLKQRIALLEEESTGYKT 832

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024176|ref|XP_003695882.1| PREDICTED: LOW QUALITY PROTEIN: colorectal mutant cancer protein-like [Apis florea]

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 103/237 (43%), Positives = 141/237 (59%), Gaps = 37/237 (15%)

Query: 23  QLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQELLS 82
           Q L  +I +L  ERA + +T V+LES H     + K   S +EARK+DLE AVLMQEL++
Sbjct: 655 QRLRRHISRLKGERAMVRSTVVELESVHAEPLNS-KNTISLAEARKLDLETAVLMQELMA 713

Query: 83  MREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHA---------------------- 120
           MREDKAELRAR++ LE E+  +E+KLN+   +   QHA                      
Sbjct: 714 MREDKAELRARVFLLEKERATIELKLNARDTQIAAQHAAIEHLQGQLRDTEAMLAMATNK 773

Query: 121 --GDTDDKS------------VENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKM 166
             G +D++S             E +L+ERL+E+  TL++V++  ELR  QS +L N+LK 
Sbjct: 774 DRGLSDNESEGMESELIEALGREARLKERLQELVSTLDKVNKNSELRHQQSAELINDLKR 833

Query: 167 ANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIARYNS 223
           AN AL+ + EK KKK QSRLK+LE +++ M ERHA QV+ LKQRI  LEE    Y +
Sbjct: 834 ANGALVQTLEKSKKKYQSRLKKLEQQMLGMVERHAAQVKSLKQRIALLEEESTGYKT 890

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415270|ref|XP_003490587.1| PREDICTED: colorectal mutant cancer protein-like [Bombus impatiens]

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/237 (42%), Positives = 140/237 (59%), Gaps = 37/237 (15%)

Query: 23  QLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQELLS 82
           Q L  +I +L  ERA + +T V+LES H     + K   S +EARK+DLE AVLMQEL++
Sbjct: 597 QRLRRHISRLKGERAMVRSTVVELESVHAEPLNS-KNTISLAEARKLDLETAVLMQELMA 655

Query: 83  MREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAG--------------------- 121
           MREDKAELRAR++ LE E+  +E+KLN+   +   QHA                      
Sbjct: 656 MREDKAELRARVFLLEKERATIELKLNARDTQIAAQHAAIEHLQGQLSDTEAMLAMATNK 715

Query: 122 -----DTDDKSVEN----------KLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKM 166
                D + + +E+          +L+ERL+E+  TL++V++  ELR  QS +L N+LK 
Sbjct: 716 DRGLSDNESEGIESELIEALGREARLKERLQELVSTLDKVNKNSELRHQQSAELVNDLKR 775

Query: 167 ANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIARYNS 223
           AN AL+ + EK KKK QSRLK+LE +++ M ERHA QV+ LKQRI  LEE    Y +
Sbjct: 776 ANGALVQTLEKSKKKYQSRLKKLEQQMLGMVERHAAQVKSLKQRIALLEEESTGYKT 832

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783241|ref|XP_392073.4| PREDICTED: colorectal mutant cancer protein-like isoform 1 [Apis mellifera]

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/237 (43%), Positives = 141/237 (59%), Gaps = 37/237 (15%)

Query: 23  QLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQELLS 82
           Q L  +I +L  ERA + +T V+LES H     + K   S +EARK+DLE AVLMQEL++
Sbjct: 598 QRLRRHISRLKGERAMVRSTVVELESVHAEPLNS-KNTISLAEARKLDLETAVLMQELMA 656

Query: 83  MREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHA---------------------- 120
           MREDKAELRAR++ LE E+  +E+KLN+   +   QHA                      
Sbjct: 657 MREDKAELRARVFLLEKERATIELKLNARDTQIAAQHAAIEHLQGQLRDTEAMLAMATNK 716

Query: 121 --GDTDDKS------------VENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKM 166
             G +D++S             E +L+ERL+E+  TL++V++  ELR  QS +L N+LK 
Sbjct: 717 DRGLSDNESEGMESELIEALGREARLKERLQELVSTLDKVNKNSELRHQQSAELINDLKR 776

Query: 167 ANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIARYNS 223
           AN AL+ + EK KKK QSRLK+LE +++ M ERHA QV+ LKQRI  LEE    Y +
Sbjct: 777 ANGALVQTLEKSKKKYQSRLKKLEQQMLGMVERHAAQVKSLKQRIALLEEESTGYKT 833

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027732|gb|EGI67800.1| Colorectal mutant cancer protein [Acromyrmex echinatior]

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/234 (43%), Positives = 138/234 (58%), Gaps = 36/234 (15%)

Query: 23  QLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQELLS 82
           Q L  +I +L  ER  + +T V+LES H     + K   S +EARK+DLE AVLMQEL++
Sbjct: 443 QRLRRHIGRLKGERTMVRSTAVELESVHAEPLNS-KNTISLAEARKLDLETAVLMQELMA 501

Query: 83  MREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHA---------------------- 120
           MREDKAELRAR++ LE E+  +E+KLN+   +   QHA                      
Sbjct: 502 MREDKAELRARVFLLEKERATIELKLNARDTQIAAQHATIQHLQGQLSDAEAMLAMATKD 561

Query: 121 -GDTDDKS------------VENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMA 167
            G +D++S             E +L+ERL+E+  TL+ V++  ELR  QS +L N+LK A
Sbjct: 562 RGLSDNESEGMESELIEALGREARLKERLQELISTLDEVNKNSELRHQQSAELVNDLKRA 621

Query: 168 NNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIARY 221
           N AL+ + EK KKK QSRLK+LE +++ M ERHA QV+ LKQRI  LEE    Y
Sbjct: 622 NGALVQTLEKSKKKYQSRLKKLEQQMLGMVERHAVQVKTLKQRIALLEEESMGY 675

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193500|gb|EFN76277.1| Colorectal mutant cancer protein [Harpegnathos saltator]

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/235 (43%), Positives = 138/235 (58%), Gaps = 37/235 (15%)

Query: 23  QLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQELLS 82
           Q L  +I +L  ER  + +T V+LES H A     K   S +EARK+DLE AVLMQEL++
Sbjct: 196 QRLRRHISRLKGERTMVRSTAVELESVH-AEPLNSKNTISLAEARKLDLETAVLMQELMA 254

Query: 83  MREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHA---------------------- 120
           MREDKAELRAR++ LE E+  +E+KLN+   +   QHA                      
Sbjct: 255 MREDKAELRARVFLLEKERATIELKLNARDTQIAAQHATIQHLQGQLSDAEAMLAMATNK 314

Query: 121 --GDTDDKS------------VENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKM 166
             G +D++S             E +L+ERL+E+  TL+ V++  ELR  QS +L N+LK 
Sbjct: 315 DRGLSDNESEGMESELIEALGREARLKERLQELISTLDEVNKNSELRHQQSAELVNDLKR 374

Query: 167 ANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIARY 221
           AN AL+ + EK KKK QSRLK+LE +++ M ERHA QV+ LKQRI  LEE    Y
Sbjct: 375 ANGALVQTLEKSKKKYQSRLKKLEQQMLGMVERHAAQVKTLKQRITLLEEESMGY 429

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182751|gb|EFN69875.1| Colorectal mutant cancer protein [Camponotus floridanus]

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/235 (42%), Positives = 139/235 (59%), Gaps = 37/235 (15%)

Query: 23  QLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQELLS 82
           Q L  +I +L  ER  + +T V+LES H     + K   S +EARK+DLE AVLMQEL++
Sbjct: 615 QRLRRHISRLKGERTMVRSTAVELESVHAEPLNS-KNTISLAEARKLDLETAVLMQELMA 673

Query: 83  MREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHA---------------------- 120
           MREDKAELRAR++ LE E+  +E+KLN+   +   QHA                      
Sbjct: 674 MREDKAELRARVFLLEKERATIELKLNARDTQIAAQHATIQHLQGQLSDAEAMLAMATNK 733

Query: 121 --GDTDDKS------------VENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKM 166
             G +D++S             E +L+ERL+E+  TL+ V++  ELR  QS +L N+LK 
Sbjct: 734 DRGLSDNESEGMESELIEALGREARLKERLQELISTLDEVNKNSELRHQQSAELINDLKR 793

Query: 167 ANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIARY 221
           AN AL+ + EK KKK QSRLKR+E +++ M +RH  QV+ ++QRIVSLEE    Y
Sbjct: 794 ANGALVQTLEKSKKKYQSRLKRVEQQMLQMVDRHTAQVKTMQQRIVSLEEESMGY 848

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788540|gb|EFZ14168.1| hypothetical protein SINV_01393 [Solenopsis invicta]

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/217 (42%), Positives = 128/217 (58%), Gaps = 36/217 (16%)

Query: 23  QLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQELLS 82
           Q L  +I +L  ER  + +T V+LES H     + K   S +EARK+DLE AVLMQEL++
Sbjct: 360 QRLRRHIGRLKGERTMVRSTAVELESVHAEPLNS-KNTISLAEARKLDLETAVLMQELMA 418

Query: 83  MREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHA---------------------- 120
           MREDKAELRAR++ LE E+  +E+KLN+   +   QHA                      
Sbjct: 419 MREDKAELRARVFLLEKERATIELKLNARDTQIAAQHATIQHLQGQLSDAEAMLAMATKD 478

Query: 121 -GDTDDKS------------VENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMA 167
            G +D++S             E +L+ERL+E+  TL+ V++  ELR  QS +L N+LK A
Sbjct: 479 RGLSDNESEGMESELIEALGREARLKERLQELISTLDEVNKNSELRHQQSAELVNDLKRA 538

Query: 168 NNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQV 204
           N AL+ + EK KKK QSRLK+LE +++ M ERHA QV
Sbjct: 539 NGALVQTLEKSKKKYQSRLKKLEQQMLGMVERHAVQV 575

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321479330|gb|EFX90286.1| hypothetical protein DAPPUDRAFT_309841 [Daphnia pulex]

 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/211 (39%), Positives = 125/211 (59%), Gaps = 25/211 (11%)

Query: 29  IDKLDKERASIGNTT--VKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQELLSMRED 86
           I +L  +R+S+ NT   V L    V +   PK     +EARK+DLEMAV+MQEL++MRE+
Sbjct: 728 IGRLKGDRSSLENTVQQVSLPLESVLVDPLPKEVLPLAEARKIDLEMAVIMQELMAMREE 787

Query: 87  KAELRARIYNLEHEKDVLEM----------KLNSLACEELTQHAGDTDDKSVEN------ 130
           ++ LR ++Y LE E+   E            LN+      T  +G+    SVE       
Sbjct: 788 RSRLRTQVYILEKERATHEAQQQATAAQLRSLNTSGSN--TDASGEKPLSSVEGADVEEL 845

Query: 131 -----KLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSR 185
                +L+ +++E++  LER++ + E+R  QS +L +++K AN  L+   E+ KKK QSR
Sbjct: 846 TVREKRLQLKIQELTGALERITSSAEIRSQQSAELVSDVKKANATLVQLLERTKKKYQSR 905

Query: 186 LKRLENEIVIMSERHATQVQHLKQRIVSLEE 216
           LKRLE ++V MSERHA QV+ LKQR++ LE+
Sbjct: 906 LKRLEQQMVNMSERHAMQVRVLKQRVMVLED 936

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
UNIPROTKB|F1NS46	813	MCC "Uncharacterized protein"	0.423	0.119	0.463	2.7e-21
UNIPROTKB|A4FUX6	829	MCC "MCC protein" [Bos taurus	0.423	0.117	0.463	2.8e-21
RGD|1561988	810	Mcc "mutated in colorectal can	0.908	0.256	0.322	1.1e-18
UNIPROTKB|P23508	829	MCC "Colorectal mutant cancer	0.912	0.252	0.318	1.8e-18
UNIPROTKB|F1MXE5	698	USHBP1 "Uncharacterized protei	0.436	0.143	0.294	6.4e-07
RGD|3899	248	Tpm4 "tropomyosin 4" [Rattus n	0.908	0.838	0.236	3.2e-06
UNIPROTKB|Q9PTD7	1360	cgn "Cingulin" [Xenopus laevis	0.930	0.156	0.238	5.9e-06
UNIPROTKB|H0YL52	265	TPM1 "Tropomyosin alpha-1 chai	0.868	0.750	0.231	7e-06
UNIPROTKB|H0YK48	248	TPM1 "Tropomyosin alpha-1 chai	0.908	0.838	0.231	7.6e-06
UNIPROTKB|D9YZV3	284	TPM1 "Tropomyosin 1 (Alpha), i	0.868	0.700	0.231	8.4e-06

UNIPROTKB|F1NS46 MCC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 230 (86.0 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
 Identities = 45/97 (46%), Positives = 71/97 (73%)

Query:   129 ENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKR 188
             E KL+ R++E+   LER++++ E+R  QS +  N+LK AN+ L+ ++EK KKK Q++LK+
Sbjct:   714 EKKLKTRVQELVSALERLTKSSEIRHQQSAEFVNDLKRANSNLVAAYEKAKKKHQNKLKK 773

Query:   189 LENEIVIMSERHATQVQHLKQRIVSLEEHIARYNSKE 225
             LE++++ M ERH TQV+ LKQRI  LEE  +R ++ E
Sbjct:   774 LESQMMAMVERHETQVRMLKQRIALLEEENSRPHTNE 810

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0010633 "negative regulation of epithelial cell migration" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|A4FUX6 MCC "MCC protein" [Bos taurus (taxid:9913)]

 Score = 230 (86.0 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
 Identities = 45/97 (46%), Positives = 71/97 (73%)

Query:   129 ENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKR 188
             E KL+ R++E+   LER++++ E+R  QS +  N+LK AN+ L+ ++EK KKK Q++LK+
Sbjct:   730 EKKLKARVQELVSALERLTKSSEIRHQQSAEFVNDLKRANSNLVAAYEKAKKKHQNKLKK 789

Query:   189 LENEIVIMSERHATQVQHLKQRIVSLEEHIARYNSKE 225
             LE++++ M ERH TQV+ LKQRI  LEE  +R ++ E
Sbjct:   790 LESQMMAMVERHETQVRMLKQRIALLEEENSRPHTNE 826

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0010633 "negative regulation of epithelial cell migration" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1561988 Mcc "mutated in colorectal cancers" [Rattus norvegicus (taxid:10116)]

 Score = 236 (88.1 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 71/220 (32%), Positives = 118/220 (53%)

Query:     7 VLLHTLQDRPDDKAEMQLLLNNIDKLDKE-RASIGNTTVKLESYHVAISEAPKVPKSSSE 65
             VL+  L    ++ AE++  L  ++K  K     +     + ++Y V I       KS  E
Sbjct:   599 VLMQELMAMKEEMAELKAQLYLLEKEKKALELKLSTREAQEQAYLVHIEHL----KSEVE 654

Query:    66 ARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDD 125
              +K +  M  L     S +E   +  A   +      + E++ NS + E  T+ A     
Sbjct:   655 EQK-EQRMRSLSSTSSSGKEKPGKESADAAS--PALSLAELRTNSDS-ELATEFANAIRR 710

Query:   126 KSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSR 185
                E KL+ R++E+   LER++++ E+R  QS +  N+LK AN+ L+ ++EK KKK Q++
Sbjct:   711 ---EKKLKARVQELVSALERLTKSSEIRHQQSAEFVNDLKRANSNLVAAYEKAKKKHQNK 767

Query:   186 LKRLENEIVIMSERHATQVQHLKQRIVSLEEHIARYNSKE 225
             LK+LE++++ M ERH TQV+ LKQRI  LEE  +R ++ E
Sbjct:   768 LKKLESQMMAMVERHETQVRMLKQRIALLEEEHSRPHTNE 807

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0010633 "negative regulation of epithelial cell migration" evidence=ISO

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=ISO

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISO

UNIPROTKB|P23508 MCC "Colorectal mutant cancer protein" [Homo sapiens (taxid:9606)]

 Score = 234 (87.4 bits), Expect = 1.8e-18, P = 1.8e-18
 Identities = 70/220 (31%), Positives = 113/220 (51%)

Query:     7 VLLHTLQDRPDDKAEMQLLLNNIDKLDKE-RASIGNTTVKLESYHVAISEAPKVPKSSSE 65
             VL+  L    ++ AE++  L  ++K  K     +     + ++Y V I       KS  E
Sbjct:   617 VLMQELMAMKEEMAELKAQLYLLEKEKKALELKLSTREAQEQAYLVHIEHL----KSEVE 672

Query:    66 ARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDD 125
              +K +  M  L     S  +DK          +     L +      C E    A  T+ 
Sbjct:   673 EQK-EQRMRSL-SSTSSGSKDKPGKECA----DAASPALSLAELRTTCSENELAAEFTNA 726

Query:   126 KSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSR 185
                E KL+ R++E+   LER++++ E+R  QS +  N+LK AN+ L+ ++EK KKK Q++
Sbjct:   727 IRREKKLKARVQELVSALERLTKSSEIRHQQSAEFVNDLKRANSNLVAAYEKAKKKHQNK 786

Query:   186 LKRLENEIVIMSERHATQVQHLKQRIVSLEEHIARYNSKE 225
             LK+LE++++ M ERH TQV+ LKQRI  LEE  +R ++ E
Sbjct:   787 LKKLESQMMAMVERHETQVRMLKQRIALLEEENSRPHTNE 826

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0010633 "negative regulation of epithelial cell migration" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IDA

GO:0004872 "receptor activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

UNIPROTKB|F1MXE5 USHBP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 126 (49.4 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
 Identities = 30/102 (29%), Positives = 59/102 (57%)

Query:   114 EELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMN 173
             EELTQ    +  +++   LRE+L+ + + LE V+R    R+ QS +L ++L  A++ L+ 
Sbjct:   583 EELTQELSASLTRALG--LREQLQSLREELEEVARKGRARRAQSAELNSDLCKAHSTLVM 640

Query:   174 SFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLE 215
             +F    +K + + ++LE ++ +M  R A ++  L+    +LE
Sbjct:   641 AFRGAHRKQEEQRRKLEQQMTLMEARQAEELAVLEATARALE 682

GO:0030165 "PDZ domain binding" evidence=IEA

RGD|3899 Tpm4 "tropomyosin 4" [Rattus norvegicus (taxid:10116)]

 Score = 127 (49.8 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 52/220 (23%), Positives = 96/220 (43%)

Query:     2 LETYKVLLHTLQDRPDDKAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPK 61
             LE  K  +  LQ + DD  +    L    +LD ER        K E    A++   ++ +
Sbjct:     7 LEAVKRKIQALQQQADDAEDRAQGLQR--ELDGER----ERREKAEGDAAALNRRIQLVE 60

Query:    62 SSSEARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAG 121
                +  +  L  A+   E      D++E   ++      KD  +M++  +  +E  +H  
Sbjct:    61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKE-AKHIA 119

Query:   122 DTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKK 181
             +  D+  E   R +L  +   LER     E+ +++S+ L  ELK   N L  S E   +K
Sbjct:   120 EEADRKYEEVAR-KLVILEGELERAEERAEVSELKSSDLEEELKNVTNNL-KSLEAASEK 177

Query:   182 SQSRLKRLENEIVIMSER--HA-TQVQHLKQRIVSLEEHI 218
                +  + E EI ++S++   A T+ +  ++ +  LE+ I
Sbjct:   178 YSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVSKLEKTI 217

GO:0001725 "stress fiber" evidence=IEA;ISO

GO:0002102 "podosome" evidence=IEA;ISO

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0006936 "muscle contraction" evidence=TAS

GO:0006979 "response to oxidative stress" evidence=IEA;ISO

GO:0030863 "cortical cytoskeleton" evidence=IEA;ISO

GO:0031941 "filamentous actin" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9PTD7 cgn "Cingulin" [Xenopus laevis (taxid:8355)]

 Score = 135 (52.6 bits), Expect = 5.9e-06, P = 5.9e-06
 Identities = 55/231 (23%), Positives = 105/231 (45%)

Query:    13 QDRPDDKAEMQLLLNNIDKLDKE-RASIGNTTVKLESYHVA----ISEAPKVPKS-SSEA 66
             Q R  DK+ M  L   +D +  E R S+     +LE Y       I EA K  K  ++EA
Sbjct:  1005 QKRLLDKS-MDKLTRELDNMSNESRGSLQLLQTQLEEYREKSRKEIGEAQKQAKEKTAEA 1063

Query:    67 RKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDK 126
              +     + + +E+  ++    EL+     +E +K ++  +L SL  +++       DD+
Sbjct:  1064 ERHQFNSSRMQEEVQKLKLALQELQVEKETVELDKQMISQRLQSLE-QDIESKKRVQDDR 1122

Query:   127 SVENK-LRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGK-----K 180
             S + K L ++LK M   L+    T EL   +  +  ++++     L     +G+     K
Sbjct:  1123 SRQVKVLEDKLKRMEAELDEEKNTVELLTDRVNRSRDQMEQQRAELNQERSRGQDLECDK 1182

Query:   181 KSQSRL-KRLENEIVIMS--ERHATQVQHLKQRIVSLEEHIARYNSKERNT 228
              S  R  K L+N +  M   ++ +  V HL+ ++  ++E + +   +E+ T
Sbjct:  1183 ISLERQNKELKNRLASMEGQQKPSVNVSHLEAKLQEIQERL-QLEEREKAT 1232

GO:0003779 "actin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005923 "tight junction" evidence=NAS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|H0YL52 TPM1 "Tropomyosin alpha-1 chain" [Homo sapiens (taxid:9606)]

 Score = 125 (49.1 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 50/216 (23%), Positives = 96/216 (44%)

Query:    17 DDKAEMQLLLNNI-DKLDKERASIGNTTVKLESYHVAISEAP--------KVPKSSSEAR 67
             D+   +Q  L    D+LDK   ++ +   KLE      ++A         ++     E  
Sbjct:    22 DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 81

Query:    68 KMDLEMAVLMQELLSMRE--DKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDD 125
             +    +A  +Q+L    +  D++E   ++     +KD  +M++  +  +E  +H  +  D
Sbjct:    82 RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKE-AKHIAEDAD 140

Query:   126 KSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSR 185
             +  E   R +L  +   LER     EL + +  +L  ELK   N L +   + +K SQ  
Sbjct:   141 RKYEEVAR-KLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKE 199

Query:   186 LKRLENEIVIMSER--HA-TQVQHLKQRIVSLEEHI 218
               R E EI ++S++   A T+ +  ++ +  LE+ I
Sbjct:   200 -DRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI 234

GO:0005737 "cytoplasm" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|H0YK48 TPM1 "Tropomyosin alpha-1 chain" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 7.6e-06, P = 7.6e-06
 Identities = 51/220 (23%), Positives = 99/220 (45%)

Query:     2 LETYKVLLHTLQDRPDDKAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPK 61
             LE  +  + +LQ++ D   E    L    +LD ER  +  T    E+   +++   ++ +
Sbjct:     7 LEAVRRKIRSLQEQADAAEERAGTLQR--ELDHER-KLRETA---EADVASLNRRIQLVE 60

Query:    62 SSSEARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAG 121
                +  +  L  A+   E      D++E   ++     +KD  +M++  +  +E  +H  
Sbjct:    61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKE-AKHIA 119

Query:   122 DTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKK 181
             +  D+  E   R +L  +   LER     EL + +  +L  ELK   N L +   + +K 
Sbjct:   120 EDADRKYEEVAR-KLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKY 178

Query:   182 SQSRLKRLENEIVIMSER--HA-TQVQHLKQRIVSLEEHI 218
             SQ    R E EI ++S++   A T+ +  ++ +  LE+ I
Sbjct:   179 SQKE-DRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI 217

GO:0005737 "cytoplasm" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|D9YZV3 TPM1 "Tropomyosin 1 (Alpha), isoform CRA_g" [Homo sapiens (taxid:9606)]

 Score = 125 (49.1 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 50/216 (23%), Positives = 96/216 (44%)

Query:    17 DDKAEMQLLLNNI-DKLDKERASIGNTTVKLESYHVAISEAP--------KVPKSSSEAR 67
             D+   +Q  L    D+LDK   ++ +   KLE      ++A         ++     E  
Sbjct:    41 DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 100

Query:    68 KMDLEMAVLMQELLSMRE--DKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDD 125
             +    +A  +Q+L    +  D++E   ++     +KD  +M++  +  +E  +H  +  D
Sbjct:   101 RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKE-AKHIAEDAD 159

Query:   126 KSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSR 185
             +  E   R +L  +   LER     EL + +  +L  ELK   N L +   + +K SQ  
Sbjct:   160 RKYEEVAR-KLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKE 218

Query:   186 LKRLENEIVIMSER--HA-TQVQHLKQRIVSLEEHI 218
               R E EI ++S++   A T+ +  ++ +  LE+ I
Sbjct:   219 -DRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI 253

GO:0005737 "cytoplasm" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
PF10506	67	MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for U	98.95
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.21
KOG0161|consensus	1930		93.27
KOG0977|consensus	546		91.36
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	90.67
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	89.27
PF00038	312	Filament: Intermediate filament protein; InterPro:	87.5
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	84.1
PRK11637	428	AmiB activator; Provisional	83.69
PRK09039	343	hypothetical protein; Validated	83.35
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	81.89
KOG0161|consensus	1930		81.67
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	80.45
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	80.16

>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer)

Probab=98.95  E-value=5e-09  Score=77.93  Aligned_cols=66  Identities=24%  Similarity=0.275  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy16002        131 KLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSE  198 (229)
Q Consensus       131 ~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~  198 (229)
                      +|+++|++|....+.+..+.+.+++|+++|+.||.++||+++..  +.++||++|+++++.+|..|++
T Consensus         2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~al--rlal~ys~r~~e~~~~llal~E   67 (67)
T PF10506_consen    2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATAL--RLALKYSERCKEAYEVLLALVE   67 (67)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHhhC
Confidence            68999999999999999999999999999999999999999988  9999999999999999999863

MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.21  E-value=0.67  Score=41.46  Aligned_cols=195  Identities=18%  Similarity=0.238  Sum_probs=108.4

Q ss_pred             HHHHHHH---HhhHhhhhhhccCcccCCCcccccCCCC--------CCCCchhhhccCchHHHHHHHHHHHhhHHHHHHH
Q psy16002         23 QLLLNNI---DKLDKERASIGNTTVKLESYHVAISEAP--------KVPKSSSEARKMDLEMAVLMQELLSMREDKAELR   91 (229)
Q Consensus        23 ~rLr~yi---~~Lk~~Ra~vk~t~v~Les~~~~~~p~~--------~~~~a~~~~q~~dLE~avimQEL~a~RE~~aeLk   91 (229)
                      .||-+||   +.|-.....+..-+..+.++...  +.+        ...........+-.|++.+..++-.++.++.+++
T Consensus        11 dRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~--~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r   88 (312)
T PF00038_consen   11 DRLASYIEKVRFLEQENKRLESEIEELREKKGE--EVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLR   88 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccc--cCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHH
Confidence            4677777   44555666666655555555322  211        0011111233556789999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHhHHhh----------h--------------h----cCCCch----------hhhHHHHH
Q psy16002         92 ARIYNLEHEKDVLEMKLNSLACEELT----------Q--------------H----AGDTDD----------KSVENKLR  133 (229)
Q Consensus        92 ~~l~llEkEK~~lElr~~~~~aq~~a----------q--------------~----a~lt~~----------lsRe~~Lk  133 (229)
                      .++......+..++--+..++.....          +              |    ..+-..          ..+..+|.
T Consensus        89 ~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~  168 (312)
T PF00038_consen   89 RKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLS  168 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccch
Confidence            99999888888888777555322222          0              0    111111          12355677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhHHH-------------HHHHHhhhhhhHHHHHHHHHHHHH
Q psy16002        134 ERLKEMSQTLERVSRTYELRQM-----QSTQLTNELKMANNAL-------------MNSFEKGKKKSQSRLKRLENEIVI  195 (229)
Q Consensus       134 ~rlqeL~~~Le~~~k~~e~r~~-----QsaElv~dL~kAnsaL-------------v~afe~AKrK~q~r~kKLEqQm~~  195 (229)
                      .-|.+++..++.++..+.....     +..++..-..+.++++             +..+..=--+.+.+...||.+|..
T Consensus       169 ~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~  248 (312)
T PF00038_consen  169 AALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE  248 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Confidence            7777777777766655543211     1111111111111111             122222222345677888999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHhhc
Q psy16002        196 MSERHATQVQHLKQRIVSLEEHIA  219 (229)
Q Consensus       196 M~~rh~~qv~~L~~~~~~LE~~~~  219 (229)
                      +..++..++......|..||.++.
T Consensus       249 le~~~~~~~~~~~~~i~~le~el~  272 (312)
T PF00038_consen  249 LEQRLDEEREEYQAEIAELEEELA  272 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccchhHH
Confidence            999999999999999888888764

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0161|consensus

Probab=93.27  E-value=7  Score=44.80  Aligned_cols=137  Identities=24%  Similarity=0.338  Sum_probs=87.1

Q ss_pred             HHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy16002         80 LLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELR------  153 (229)
Q Consensus        80 L~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~r------  153 (229)
                      +-+.+.++.+|+..+.-+++.|+.+|.-+.-..-...--+++.+...+...+|-..|..|-..|+.....++.-      
T Consensus      1669 ~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kk 1748 (1930)
T KOG0161|consen 1669 LAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKK 1748 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            44667777788888888888888887776522222222234455556677777777777777777777655432      


Q ss_pred             -HHHHHHHHHHHHhhhHH------HHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q psy16002        154 -QMQSTQLTNELKMANNA------LMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIA  219 (229)
Q Consensus       154 -~~QsaElv~dL~kAnsa------Lv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~~~~  219 (229)
                       ..+.+.+..||...-+.      +-..+++..|=.|.++..+|+-.   ..+-..+++.|+++|+.||..-.
T Consensus      1749 a~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a---~~~~k~~i~~Learir~LE~~l~ 1818 (1930)
T KOG0161|consen 1749 AQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAA---LKGGKKQIAKLEARIRELESELE 1818 (1930)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhccHHHHHHHHHHHHHHHHHHh
Confidence             34566677777755443      33445555555555555555432   23445788999999999997654

>KOG0977|consensus

Probab=91.36  E-value=10  Score=38.47  Aligned_cols=38  Identities=34%  Similarity=0.414  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy16002         72 EMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLN  109 (229)
Q Consensus        72 E~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~  109 (229)
                      +.+-+..|+-..++++.+|+.++...+++..+....+.
T Consensus       107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~  144 (546)
T KOG0977|consen  107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLD  144 (546)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            77888999999999999999999999999888887774

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=90.67  E-value=13  Score=37.56  Aligned_cols=168  Identities=19%  Similarity=0.229  Sum_probs=98.2

Q ss_pred             hhHhhhhhhccCcccCCCcccccCCCCCCCCchhh-hccC--chHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHH--
Q psy16002         31 KLDKERASIGNTTVKLESYHVAISEAPKVPKSSSE-ARKM--DLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLE--  105 (229)
Q Consensus        31 ~Lk~~Ra~vk~t~v~Les~~~~~~p~~~~~~a~~~-~q~~--dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lE--  105 (229)
                      -|..=|+-|..-..+|....-+|-|.|.+|-.++- ...|  .-=|-.+=.=|+.+||.+.+++-+..+-+.|+.+.+  
T Consensus        49 el~qvr~~~~~Q~seL~~l~~ev~~~~~~peke~~~~~~~~~~n~m~~lD~rLvevre~L~~irr~q~~q~~erk~~~qe  128 (531)
T PF15450_consen   49 ELLQVRARVQLQDSELMQLRQEVKQRAQVPEKEACEPSSIQNQNQMQQLDKRLVEVREALTQIRRKQALQDSERKGSEQE  128 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCCCccchhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            34444544444444444444444343333322221 1111  222334445689999999999988888777766544  


Q ss_pred             --HHHHHH----HhHHhh----hh-----------------cC-------CCc-----hhhhHHHHHHHHHHHHHHHHHH
Q psy16002        106 --MKLNSL----ACEELT----QH-----------------AG-------DTD-----DKSVENKLRERLKEMSQTLERV  146 (229)
Q Consensus       106 --lr~~~~----~aq~~a----q~-----------------a~-------lt~-----~lsRe~~Lk~rlqeL~~~Le~~  146 (229)
                        +|++.+    +.++.+    ++                 +.       +++     ++.|+.+|++-||.-..+||+.
T Consensus       129 ~~~rl~~L~~~Lrqee~~re~a~~aL~k~qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~  208 (531)
T PF15450_consen  129 AGLRLSKLQDMLRQEEQGREDACSALQKSQEEDSQKVDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKR  208 (531)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhcchhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              555433    222222    11                 00       111     1558999999999988899998


Q ss_pred             HHHH---HHHHHHHHHHHHH-----HHhhhHHHHHHHHhhhh-----------hhHHHHHHHHHHHHHHHH
Q psy16002        147 SRTY---ELRQMQSTQLTNE-----LKMANNALMNSFEKGKK-----------KSQSRLKRLENEIVIMSE  198 (229)
Q Consensus       147 ~k~~---e~r~~QsaElv~d-----L~kAnsaLv~afe~AKr-----------K~q~r~kKLEqQm~~M~~  198 (229)
                      -+.+   +.++..+...-.+     |..-+...+.++.+-+.           |+..++++|-.=++.|..
T Consensus       209 mka~e~~rl~~E~~lreElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk  279 (531)
T PF15450_consen  209 MKAQESSRLRTERSLREELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTK  279 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHH
Confidence            8877   4445444433333     55666667777766544           778888898888887753

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=89.27  E-value=36  Score=36.81  Aligned_cols=64  Identities=25%  Similarity=0.279  Sum_probs=30.5

Q ss_pred             CcccCCCcccccCCCCCC----CCchh-hhccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy16002         42 TTVKLESYHVAISEAPKV----PKSSS-EARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLN  109 (229)
Q Consensus        42 t~v~Les~~~~~~p~~~~----~~a~~-~~q~~dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~  109 (229)
                      -+|.|+|..++  |.+..    +.+.+ ..+..  +...+..++..++.....+...+..++.+-+.++..+.
T Consensus       637 riVTl~G~~~~--~~G~~tGG~~~~~~~~~~~~--~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  705 (1163)
T COG1196         637 RIVTLDGDLVE--PSGSITGGSRNKRSSLAQKR--ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLE  705 (1163)
T ss_pred             eEEecCCcEEe--CCeeeecCCccccchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35777887777  43211    11111 11112  33345555555555555555555555555555544443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=87.50  E-value=21  Score=31.99  Aligned_cols=134  Identities=21%  Similarity=0.328  Sum_probs=82.4

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhh-----------hcCC---Cchhhh-HHHHHHHHHHHHHH
Q psy16002         78 QELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQ-----------HAGD---TDDKSV-ENKLRERLKEMSQT  142 (229)
Q Consensus        78 QEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq-----------~a~l---t~~lsR-e~~Lk~rlqeL~~~  142 (229)
                      ++|..+=+-+|.-..++..||.+.+.|+..+..+..-....           +..+   -+..+. ...|...+..+...
T Consensus         4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e   83 (312)
T PF00038_consen    4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEE   83 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHH
Confidence            46777778889999999999999999999997654442111           0111   000111 22444455555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16002        143 LERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIV  212 (229)
Q Consensus       143 Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~  212 (229)
                      ++......+.-......+-.++......+- ....++-.-+.++.-|+.++.-+..-|.+++..|...+.
T Consensus        84 ~~~~r~k~e~e~~~~~~le~el~~lrk~ld-~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~  152 (312)
T PF00038_consen   84 LEDLRRKYEEELAERKDLEEELESLRKDLD-EETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ  152 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence            555555555444444444444444443333 334556668889999999999999999999998888775

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=84.10  E-value=35  Score=31.56  Aligned_cols=85  Identities=19%  Similarity=0.266  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16002        134 ERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVS  213 (229)
Q Consensus       134 ~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~  213 (229)
                      ..|..+...|......-..+.....++-.+|..-+.. +.....-+.+.+.++..++.....-...-..+|..|+.....
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~-i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~  287 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEK-IEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDA  287 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            3455566666666666666666777777777766665 466677777778888888877776666678899999999999


Q ss_pred             HHHhhc
Q psy16002        214 LEEHIA  219 (229)
Q Consensus       214 LE~~~~  219 (229)
                      ||.-..
T Consensus       288 Le~~~g  293 (325)
T PF08317_consen  288 LEKLTG  293 (325)
T ss_pred             HHHHHC
Confidence            998653

>PRK11637 AmiB activator; Provisional

Probab=83.69  E-value=41  Score=32.00  Aligned_cols=27  Identities=15%  Similarity=0.283  Sum_probs=11.8

Q ss_pred             HHhhhHHHHHHHHhhhhhhHHHHHHHH
Q psy16002        164 LKMANNALMNSFEKGKKKSQSRLKRLE  190 (229)
Q Consensus       164 L~kAnsaLv~afe~AKrK~q~r~kKLE  190 (229)
                      +-.+...++..|..++++.....+.|+
T Consensus       164 i~~~d~~~l~~l~~~~~~L~~~k~~le  190 (428)
T PRK11637        164 LNQARQETIAELKQTREELAAQKAELE  190 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444333

>PRK09039 hypothetical protein; Validated

Probab=83.35  E-value=41  Score=31.70  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=14.1

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHH
Q psy16002         74 AVLMQELLSMREDKAELRARIYN   96 (229)
Q Consensus        74 avimQEL~a~RE~~aeLk~~l~l   96 (229)
                      .++-|++-...+++++|..+|..
T Consensus        42 ~fLs~~i~~~~~eL~~L~~qIa~   64 (343)
T PRK09039         42 FFLSREISGKDSALDRLNSQIAE   64 (343)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHH
Confidence            44556666666666666666543

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=81.89  E-value=66  Score=33.10  Aligned_cols=15  Identities=33%  Similarity=0.452  Sum_probs=5.7

Q ss_pred             HHHHHHHhhHHHHHH
Q psy16002         76 LMQELLSMREDKAEL   90 (229)
Q Consensus        76 imQEL~a~RE~~aeL   90 (229)
                      +..++.+.+..+.++
T Consensus       682 l~~~~~~l~~~l~~~  696 (1179)
T TIGR02168       682 LEEKIEELEEKIAEL  696 (1179)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333343333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0161|consensus

Probab=81.67  E-value=1.1e+02  Score=35.64  Aligned_cols=128  Identities=27%  Similarity=0.325  Sum_probs=72.3

Q ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHH-------------------
Q psy16002         70 DLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVEN-------------------  130 (229)
Q Consensus        70 dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~-------------------  130 (229)
                      ..++--+.+++..+++.+.++-..+..++.||..++-++..+......+-- .-+++.+++                   
T Consensus       928 e~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e-~~~kL~kekk~lEe~~~~l~~~l~~~ee 1006 (1930)
T KOG0161|consen  928 ERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDE-NISKLSKEKKELEERIRELQDDLQAEEE 1006 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455668899999999999999999999999999998766554444100 000111111                   


Q ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q psy16002        131 ----------KLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSER  199 (229)
Q Consensus       131 ----------~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~r  199 (229)
                                +|-.+|.++-..|++-.+.....-..-..|..+| +++..-+.-+..-+...+.++++.|-++..|..+
T Consensus      1007 k~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el-~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k 1084 (1930)
T KOG0161|consen 1007 KAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL-KDLQESIEELKKQKEELDNQLKKKESELSQLQSK 1084 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      2223444444444444333333333334555555 3333333335555666666677777666666543

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=80.45  E-value=36  Score=29.13  Aligned_cols=81  Identities=22%  Similarity=0.263  Sum_probs=0.0

Q ss_pred             HHHHHHHHhhHhhhhhhccCcccCCCcccccCCCCCCCCchhhhccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q psy16002         23 QLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKD  102 (229)
Q Consensus        23 ~rLr~yi~~Lk~~Ra~vk~t~v~Les~~~~~~p~~~~~~a~~~~q~~dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~  102 (229)
                      ++|-+.+..|+.....+...+..+++++.. .|.+..+...+....++--.+.+..||....-.+.++..++..+.-+-.
T Consensus        27 ~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~  105 (194)
T PF08614_consen   27 NRLADRTSLLKAENEQLQPEAESLPSSSSS-SPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQ  105 (194)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            677777888877777766654433442221 1211122222222233333344666666666666666666655544433


Q ss_pred             hH
Q psy16002        103 VL  104 (229)
Q Consensus       103 ~l  104 (229)
                      .+
T Consensus       106 ~l  107 (194)
T PF08614_consen  106 EL  107 (194)
T ss_dssp             --
T ss_pred             hh
Confidence            33

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=80.16  E-value=40  Score=29.45  Aligned_cols=48  Identities=13%  Similarity=0.230  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHH
Q psy16002        143 LERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLE  190 (229)
Q Consensus       143 Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLE  190 (229)
                      +.......+.++......+..+.+.......++++||++|+..++.+|
T Consensus        91 l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e  138 (236)
T cd07651          91 LAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKIN  138 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            333344444444455555556666666666666777777766666655

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 26/156 (16%), Positives = 65/156 (41%), Gaps = 4/156 (2%)

Query: 67   RKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDK 126
            +K+ LE      ++  M +D   +  +   L  E+ +LE +++ L      +     +  
Sbjct: 972  QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031

Query: 127  SVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRL 186
             ++NK    + E+   L++  ++ +  +    +L  E    +  +    +    + +++L
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA-ELQAQIAELKAQL 1090

Query: 187  KRLENEIVIMS---ERHATQVQHLKQRIVSLEEHIA 219
             + E E+       E   +Q  +  ++I  LE HI+
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 30/153 (19%), Positives = 68/153 (44%), Gaps = 5/153 (3%)

Query: 64   SEARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDT 123
             + +KM+ ++ ++  +   + +++  L  R+ +L       E K  +L  +   +H    
Sbjct: 983  GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT-KLKNKHESMI 1041

Query: 124  DDKSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQ 183
             +  +E +L ++ ++  Q LE++ R  E       +   EL+     L     K +++ Q
Sbjct: 1042 SE--LEVRL-KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQ 1098

Query: 184  SRLKRLENEIVIMSERHATQVQHLKQRIVSLEE 216
            + L RLE+E          +++ L+  I  L+E
Sbjct: 1099 AALARLEDE-TSQKNNALKKIRELESHISDLQE 1130

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 31/213 (14%), Positives = 77/213 (36%), Gaps = 14/213 (6%)

Query: 12   LQDRPDDKAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDL 71
            L      + EMQ     + +  + +        +LE  H  + E   + +   +A     
Sbjct: 849  LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908

Query: 72   EMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENK 131
              A  M+  L+ +  K EL   ++ +E   +  E +      ++L         + ++  
Sbjct: 909  AEAEEMRVRLAAK--KQELEEILHEMEARIEEEEERS-----QQLQAEKKKMQQQMLD-- 959

Query: 132  LRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLEN 191
            L E+L+E     +++         +  ++ +++ +  +   N   K +K  + R+  L  
Sbjct: 960  LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN-NKLTKERKLLEERVSDLTT 1018

Query: 192  EIVIMSERHATQVQHLKQRIVSLEEHIARYNSK 224
             +    E    + ++L +     E  I+    +
Sbjct: 1019 NLAEEEE----KAKNLTKLKNKHESMISELEVR 1047

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 39/259 (15%), Positives = 75/259 (28%), Gaps = 64/259 (24%)

Query: 3   ETYKVLLHTLQDRPDDKAEMQLL-LNN------IDKLDKE-------R-ASIGNTTVKLE 47
                L   L+ +P +     LL L N       +  +         R   + +      
Sbjct: 229 SIQAELRRLLKSKPYENC---LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 48  SYHVAISEAPKV--PKSSSE--ARKMDLEMAVLMQE-------LLSM-----REDKAEL- 90
           + H+++        P        + +D     L +E        LS+     R+  A   
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 91  RARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERV---S 147
             +  N +    ++E  LN L   E  +     D  SV           +  L  +    
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKM---FDRLSV---FPPSAHIPTILLSLIWFDV 399

Query: 148 RTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHL 207
              ++  +      N+L     +L+   EK  K+S   +      I +  +        L
Sbjct: 400 IKSDVMVV-----VNKL--HKYSLV---EKQPKESTISI----PSIYLELKVKLENEYAL 445

Query: 208 KQRIVSLEEHIARYNSKER 226
            + I      +  YN  + 
Sbjct: 446 HRSI------VDHYNIPKT 458

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 22/143 (15%), Positives = 52/143 (36%), Gaps = 26/143 (18%)

Query: 99  HEKDVLEMKLNSLACEELTQH-----AGDTDDKSVENKLR-----ERLKEMSQTLERVSR 148
           H  D  E   +    +++          + D K V++  +     E +  +  + + VS 
Sbjct: 5   HHMD-FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 149 TYEL----RQMQSTQ----LTNELKMANNALMNSF-EKGKKKS------QSRLKRLENEI 193
           T  L       Q       +   L++    LM+    + ++ S        +  RL N+ 
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 194 VIMSERHATQVQHLKQRIVSLEE 216
            + ++ + +++Q   +   +L E
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLE 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	89.27
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	86.71
3fx7_A	94	Putative uncharacterized protein; double helix, un	84.54
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	84.42
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	81.61
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	81.02

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=89.27  E-value=3.8  Score=34.96  Aligned_cols=115  Identities=13%  Similarity=0.087  Sum_probs=77.5

Q ss_pred             HHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002         79 ELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQST  158 (229)
Q Consensus        79 EL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~r~~Qsa  158 (229)
                      |+.--|+...+.+.++..++.|=.....--.-+.+...+++.   ....|...|+.++..|...++.+..+...-+.++.
T Consensus        11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~---~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~   87 (189)
T 2v71_A           11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLV---QAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY   87 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666667776665544333322233333333322   23568889999999999888888887777777777


Q ss_pred             HHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhH
Q psy16002        159 QLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERH  200 (229)
Q Consensus       159 Elv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh  200 (229)
                      .-++-|.+-    +..++..+..++.+++.|||.=-+|....
T Consensus        88 ~~~~~Lq~e----l~~l~~~~~~l~~~ireLEq~NDdlEr~~  125 (189)
T 2v71_A           88 KQVSVLEDD----LSQTRAIKEQLHKYVRELEQANDDLERAK  125 (189)
T ss_dssp             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            777777776    44566788889999999999887776544

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=86.71  E-value=15  Score=38.04  Aligned_cols=66  Identities=11%  Similarity=0.166  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy16002        129 ENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSE  198 (229)
Q Consensus       129 e~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~  198 (229)
                      -..|...+.++...+++..+.....-+...++-.||.    ..|..++..+.+.+.++-.||..+.....
T Consensus       986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~----~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A          986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE----QLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666666666666555555444444444554    55566666666666666666655555543

>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A

Probab=84.54  E-value=9.4  Score=29.34  Aligned_cols=65  Identities=26%  Similarity=0.309  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHh-------hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q psy16002        155 MQSTQLTNELKMANNALMNSFEK-------GKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIA  219 (229)
Q Consensus       155 ~QsaElv~dL~kAnsaLv~afe~-------AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~~~~  219 (229)
                      .+...|..+|..+=+.|-..|+.       -++|.....++|-+.+..-.+.-.+++.-|+..|+.||+.-.
T Consensus        16 ~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~~~~   87 (94)
T 3fx7_A           16 GHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEEDYL   87 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHHHHH
Confidence            34455666666666666666655       458999999999999999999999999999999999998654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.42  E-value=25  Score=32.37  Aligned_cols=24  Identities=17%  Similarity=0.235  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHhhccccccc
Q psy16002        202 TQVQHLKQRIVSLEEHIARYNSKE  225 (229)
Q Consensus       202 ~qv~~L~~~~~~LE~~~~~~~~~~  225 (229)
                      ++...+++.+..|++..-++-.-.
T Consensus       565 ~e~~~~~~~~~~l~~~~~~~~~~~  588 (597)
T 3oja_B          565 QETSLKRQKVKQLEAKKNRNPDTR  588 (597)
T ss_dssp             HHHHHHHHHHHHHHHTTC------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccc
Confidence            455677788888888877655433

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=81.61  E-value=17  Score=28.35  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=58.8

Q ss_pred             CchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------hHHhhhhcCCCchhhhHHHHHHHHHHHHH
Q psy16002         69 MDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLA-------CEELTQHAGDTDDKSVENKLRERLKEMSQ  141 (229)
Q Consensus        69 ~dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~-------aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~  141 (229)
                      |=|.-+.---|+.++.+++..|+.++.-.++.+..|+.....+.       .+.++....+++...|..+|..+=.+|-.
T Consensus         4 PLL~~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~   83 (129)
T 2fxo_A            4 PLLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEA   83 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            34555566667777777777777777777777777766654332       22222222233333333333333222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy16002        142 TLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMS  197 (229)
Q Consensus       142 ~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~  197 (229)
                      .|    ..-..+       +.+.-..|+.    +..+|||-+..+..|+.++....
T Consensus        84 ~l----~el~~r-------leeeee~~~~----L~~~kkkle~e~~~Lk~~led~e  124 (129)
T 2fxo_A           84 KV----KEMNKR-------LEDEEEMNAE----LTAKKRKLEDECSELKRDIDDLE  124 (129)
T ss_dssp             HH----HHHHHH-------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH----HHHHHH-------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            22    222222       2222233333    33567777777777777776653

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=81.02  E-value=24  Score=29.64  Aligned_cols=86  Identities=16%  Similarity=0.217  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy16002         87 KAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSR---TYELRQMQSTQLTNE  163 (229)
Q Consensus        87 ~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k---~~e~r~~QsaElv~d  163 (229)
                      +-||..++..++..|..|+-.+..+-++....-.+.+--.-+-.+|.+|++.|...|+.+..   ....-..+..+-+++
T Consensus        50 ~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~  129 (168)
T 3o0z_A           50 NRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNH  129 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555444443331111100011334566666666655554432   122333445555555


Q ss_pred             HHhhhHHHH
Q psy16002        164 LKMANNALM  172 (229)
Q Consensus       164 L~kAnsaLv  172 (229)
                      |-|..+++-
T Consensus       130 lEKe~a~~e  138 (168)
T 3o0z_A          130 SEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhh
Confidence            555555444

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00