Psyllid ID: psy16110

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------72
Protein Sequence
MRRLFDSIVHLSILLVSIVQVSSEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSVSSEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAPNLVFQSHLSGHRCECAQY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHccccccccccccccccccEEcccccccEEEEcccccccccccccccccccEEEEEcccccccccccHHHcccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEEEccccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHccccccEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccccccHHHHHccccccccccccHHHEEccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccccccccEEEEEcccccccccccHHHccccccEEEEEccccccccccHHHHcccccccEEEccccccccccHHHHHcccccccEEEccccccHHHccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEccccccccccccccccHHHcccccccEEEcccccccccccHHHccccccccHHHccccccEEEEccccccccccccccccccEEEEccccccccccHHHcccccccEEEcccccccEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEccccccccccHHHcccccccc
Coil and Loop (DISEMBL)
MRRLFDSIVHLSILLVSIVQvssepcdtmiddfpypcrckkmsesqlamdcdnvafpngeyptlpyglnlvtfsqrwvghqilpmqifsssvssepcdtmiddfpypcrckkmsesqlamdcdnvafpngeyptlpyglnlvtfsqrwvghqilpmqifsssdipirrldfSGNALRRLSDKLFSPHRDTLQELRLadnlfgdslnpifstsefhglvnlrildlsDNQIKAIEEGILKGCDNLLELrmdhnrftsipsvslngpRALRILSMAYNRigtlkadsFLSQRWLERIILRgnrlttieggafngLAKIHILNLGynrlnklnsdtfqggafngLAKIHILNLGynrlnklnsdtfqgthiTIFSFFQDFQKLKSLDLNGNFLINlestgledtldnlnvrdnqITTLSSSALNYKLLTKLDlshnnlkeleptaftnvptlLHLNLSrnahlsslpvggfdplkklEVLDLAATGlksipqyqFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLtyldlsnnnivnlrvgslyglpsmkrldlSFNKLttfkgdyfntkskpntssleelnlnnneltylfpssftihSKLKTLKLAFNKFNYFPKELILGLSYLQEIdlsnnqlktiddydygylprlrklnlnnnnidaisetcffnssqLQIINLSFNRLEKLPERLFNTFlytnydmapnlvfqshlsghrcecaqy
Flexible Loop (DISEMBL)
MRRLFDSIVHLSILLVSIVQVSSEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSVSSEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQifsssdipIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRftsipsvslngpRALRILSMAYNRIGTlkadsflsqRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAPNLVFQSHLSGHRCECAQY
Low Complexity Region (SEG)
MRRLFDsivhlsillvsivqvssEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSVSSEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSleelnlnnnelTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKlnlnnnnIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAPNLVFQSHLSGHRCECAQY
Disordered region (IsUnstruct)
***LFDSIVHLSILLVSIVQVSSEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSVSSEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFN************LNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAPNLVFQSHLSGHRC*****
Disordered Region (DISOPRED)
***LFDSIVHLSILLVSIVQVSSEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSVSSEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAPNLVFQSHLSGHRCECAQY
Disordered Region (DISEMBL)
MRRLFDSIVHLSILLVSIVQVSSEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSVSSEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAPNLVFQSHLSGHRCECAQY
Disordered Region (DISPRO)
*RRLFDSIVHLSILLVSIVQVSSEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSVSSEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAPNLVFQSHLSGHRCECAQ*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRLFDSIVHLSILLVSIVQVSSEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSVSSEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAPNLVFQSHLSGHRCECAQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	719	2.2.26 [Sep-21-2011]
P70389	603	Insulin-like growth facto	yes	N/A	0.581	0.693	0.283	1e-29
P12024	1315	Chaoptin OS=Drosophila me	no	N/A	0.699	0.382	0.274	2e-28
P35859	603	Insulin-like growth facto	yes	N/A	0.606	0.723	0.290	1e-27
O02833	605	Insulin-like growth facto	N/A	N/A	0.614	0.730	0.277	2e-27
P35858	605	Insulin-like growth facto	yes	N/A	0.635	0.755	0.268	3e-26
Q80X72	579	Leucine-rich repeat-conta	no	N/A	0.389	0.483	0.331	8e-26
Q9HBX8	967	Leucine-rich repeat-conta	no	N/A	0.549	0.408	0.284	1e-25
P40197	560	Platelet glycoprotein V O	no	N/A	0.477	0.612	0.275	1e-24
Q8R5M3	578	Leucine-rich repeat-conta	no	N/A	0.456	0.567	0.306	4e-24
Q9WVB4	1523	Slit homolog 3 protein OS	no	N/A	0.638	0.301	0.25	5e-24

>sp|P70389|ALS_MOUSE Insulin-like growth factor-binding protein complex acid labile subunit OS=Mus musculus GN=Igfals PE=2 SV=1

 Score =  132 bits (331), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 130/459 (28%), Positives = 214/459 (46%), Gaps = 41/459 (8%)

Query: 247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE 306
           L +D N  +SIPS +     +L  L++  + + +L+  + L  + L  + L  N L ++ 
Sbjct: 79  LWLDGNNLSSIPSAAFQNLSSLDFLNLQGSWLRSLEPQALLGLQNLYHLHLERNLLRSLA 138

Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGT 366
            G F     +  L+LG N L +L       G F GL+ +  LNLG+N L  L    FQG 
Sbjct: 139 AGLFRHTPSLASLSLGNNLLGRLEE-----GLFRGLSHLWDLNLGWNSLVVLPDTVFQG- 192

Query: 367 HITIFSFFQDFQKLKSLDLNGNFLINLEST---GLEDTLDNLNVRDNQITTLSSSA-LNY 422
                        L  L L GN L  L+     GL + L  L++  N + ++ ++  ++ 
Sbjct: 193 ----------LGNLHELVLAGNKLTYLQPALLCGLGE-LRELDLSRNALRSVKANVFIHL 241

Query: 423 KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAAT 482
             L KL L  N +  + P AF  +  L  L+LS N  ++ L    F  L  L VL LA  
Sbjct: 242 PRLQKLYLDRNLITAVAPRAFLGMKALRWLDLSHN-RVAGLLEDTFPGLLGLHVLRLAHN 300

Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
            + S+    F +L  L+ L L HN + ++ E  F+ L  L  L L++N I  ++VG+ +G
Sbjct: 301 AITSLRPRTFKDLHFLEELQLGHNRIRQLGEKTFEGLGQLEVLTLNDNQIHEVKVGAFFG 360

Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNT-------------------SSLEELNLNNN 583
           L ++  ++LS N L +     F    + ++                   S L  L L +N
Sbjct: 361 LFNVAVMNLSGNCLRSLPEHVFQGLGRLHSLHLEHSCLGRIRLHTFAGLSGLRRLFLRDN 420

Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGY 643
            ++ +   S    S+L  L L  N+  + P++L  GL  L+ + LSNNQL  + +   G 
Sbjct: 421 SISSIEEQSLAGLSELLELDLTANQLTHLPRQLFQGLGQLEYLLLSNNQLTMLSEDVLGP 480

Query: 644 LPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682
           L R   L+L++N ++  +E  F +  +L+ +NL  N L+
Sbjct: 481 LQRAFWLDLSHNRLETPAEGLFSSLGRLRYLNLRNNSLQ 519

May have an important role in regulating the access of circulating IGFs to the tissues.
Mus musculus (taxid: 10090)

>sp|P12024|CHAO_DROME Chaoptin OS=Drosophila melanogaster GN=chp PE=1 SV=2

 Score =  128 bits (321), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 161/586 (27%), Positives = 269/586 (45%), Gaps = 83/586 (14%)

Query: 166  IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSL------------------NP 207
            ++RLDFS N +  + +  F     +L  L+++    G +L                  N 
Sbjct: 478  LKRLDFSENGISSIENDAFHEIGHSLISLKMSHGYSGSALPAEPLRHLTSLQELDFSNNH 537

Query: 208  IFSTSE--FHGLVNLRILDLSDNQIKAIEEGILKG--CDNLLELRMDHNRFTSIPSVSLN 263
            I S S+  FH L NLR+L+L DN+I+ + +G  +G     L E+ +  N  TSI   +  
Sbjct: 538  ISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSISQHTFF 597

Query: 264  GPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGY 323
               ALR L +  N+I  ++  +F++   LE + LRGN++  +   +F  L K+ IL++ +
Sbjct: 598  DLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADESFQNLPKLEILDMAF 657

Query: 324  NRLNKLNSDTF-QGGAFNGLAKIHILNLGYNRLNKL---NSDTFQGTHITIFSFFQDFQK 379
            N+L   N D F Q G  + L     +N+ +N++ +L   +S + +  H  ++        
Sbjct: 658  NQLPNFNFDYFDQVGTLSNLN----VNVSHNQIRQLMYNSSWSGRNEHGGMYH-----SN 708

Query: 380  LKSLDLNGNFLINLESTGL----EDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNN 434
            +K LDL+ N  I++   G     E +L +L++  N +   +     N   L  LDLS+N 
Sbjct: 709  IKILDLSHNN-ISIIHPGYFRPAEISLTHLHLGYNSLMNTTRDVFGNMPHLQWLDLSYNW 767

Query: 435  LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDE 494
            + EL+  AF N   L  +    N +LS +P   F P++ L ++D +   L+ +P   F  
Sbjct: 768  IHELDFDAFKNTKQLQLVFFGHN-YLSDIPQDIFKPVQGLRIVDFSHNHLRGLPDNLFYN 826

Query: 495  LLNLKYLCLAHNHLTEIPEMMFKNLLNLTY--LDLSNNNIVNLRVGSLYG-LPSMKRLDL 551
               ++ L ++HN + +IP     +L  LT   L LSNN I  +    L     S++ LD+
Sbjct: 827  G-GMEKLDVSHNMMLKIPSSSLSSLAALTLCELHLSNNFISTIHSMDLSNKFRSLRYLDI 885

Query: 552  SFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSF------------------ 593
            S+N L       F T  K     L  L+L++N    +   SF                  
Sbjct: 886  SYNYLLRIDDAVFATMPK-----LAVLDLSHNRDLKVMDKSFMGLENSLIKLGLENISLS 940

Query: 594  ---TIHSK-LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
                I  K L+  +L +N+    P+EL   +S L+ +DLSNN L  +       LP LR+
Sbjct: 941  TVPEIRLKYLREFRLGYNELPSIPQELAHNMSNLRMLDLSNNDLTNVPLMTQA-LPHLRR 999

Query: 650  L--------NLNNNNIDAISETC-FFNSSQLQIINLSFNRLEKLPE 686
            L        +LNNN+ D ++E     + S  ++    +  L+ LP 
Sbjct: 1000 LMLSGNPITSLNNNSFDGVNEDLEMLDISNFRLHYFEYGCLDSLPH 1045

Required for photoreceptor cell morphogenesis. Mediates homophilic cellular adhesion.

Drosophila melanogaster (taxid: 7227)

>sp|P35859|ALS_RAT Insulin-like growth factor-binding protein complex acid labile subunit OS=Rattus norvegicus GN=Igfals PE=1 SV=1

 Score =  125 bits (315), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 138/475 (29%), Positives = 217/475 (45%), Gaps = 39/475 (8%)

Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
           V+ R L L  N + +I     +   +L  L +  +   S+   +L G + L  L +  NR
Sbjct: 74  VSTRALWLDGNNLSSIPSAAFQNLSSLDFLNLQGSWLRSLEPQALLGLQNLYYLHLERNR 133

Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
           +  L    F     L  + L  N L  +E G F GL+ +  LNLG+N L  L    FQG 
Sbjct: 134 LRNLAVGLFTHTPSLASLSLSSNLLGRLEEGLFQGLSHLWDLNLGWNSLVVLPDTVFQG- 192

Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
               L  +H L L  N+L  L    F G             +L+ LDL+ N L ++++  
Sbjct: 193 ----LGNLHELVLAGNKLTYLQPALFCG-----------LGELRELDLSRNALRSVKANV 237

Query: 398 LED--TLDNLNVRDNQITTLSSSA-LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
                 L  L +  N IT ++  A L  K L  LDLSHN +  L    F   P LL L++
Sbjct: 238 FVHLPRLQKLYLDRNLITAVAPGAFLGMKALRWLDLSHNRVAGLMEDTF---PGLLGLHV 294

Query: 455 SRNAH--LSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIP 512
            R AH  ++SL    F  L  LE L L    ++ + +  F+ L  L+ L L  N +TE+ 
Sbjct: 295 LRLAHNAIASLRPRTFKDLHFLEELQLGHNRIRQLGERTFEGLGQLEVLTLNDNQITEVR 354

Query: 513 EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN-----KLTTFKGDYFNTK 567
              F  L N+  ++LS N + +L      GL  +  L L  +     +L TF G      
Sbjct: 355 VGAFSGLFNVAVMNLSGNCLRSLPERVFQGLDKLHSLHLEHSCLGHVRLHTFAG------ 408

Query: 568 SKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID 627
                S L  L L +N ++ +   S    S+L  L L  N+  + P++L  GL +L+ + 
Sbjct: 409 ----LSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTTNRLTHLPRQLFQGLGHLEYLL 464

Query: 628 LSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682
           LS NQL T+     G L R   L++++N+++ ++E  F +  +++ ++L  N L+
Sbjct: 465 LSYNQLTTLSAEVLGPLQRAFWLDISHNHLETLAEGLFSSLGRVRYLSLRNNSLQ 519

May have an important role in regulating the access of circulating IGFs to the tissues.

Rattus norvegicus (taxid: 10116)

>sp|O02833|ALS_PAPHA Insulin-like growth factor-binding protein complex acid labile subunit OS=Papio hamadryas GN=IGFALS PE=2 SV=1

 Score =  124 bits (312), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 131/472 (27%), Positives = 212/472 (44%), Gaps = 30/472 (6%)

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
           S   +  + +GI  G   L    +D N  +SIP  +     +L  L++   ++G+L+  +
Sbjct: 61  SSRNLTRLPDGIPGGTQALW---LDSNNLSSIPPAAFRNLSSLAFLNLQGGQLGSLEPQA 117

Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
            L    L  + L  N+L ++  G F     + +L L  NRL++L     + G F GL  +
Sbjct: 118 LLGLENLCHLHLERNQLRSLAVGTFAYTPALALLGLSNNRLSRL-----EDGLFEGLGNL 172

Query: 346 HILNLGYNRLNKLNSDTFQG----THITIF---------SFFQDFQKLKSLDLNGNFLIN 392
             LNLG+N L  L    F+G      + +          + F    +L+ LDL+ N L  
Sbjct: 173 WDLNLGWNSLAVLPDAAFRGLGGLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALRA 232

Query: 393 LESTGLED--TLDNLNVRDNQITTLSSSA-LNYKLLTKLDLSHNNLKELEPTAFTNVPTL 449
           +++        L  L +  N I  ++  A L  K L  LDLSHN +  L    F  +  L
Sbjct: 233 IKANVFAQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGL 292

Query: 450 LHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT 509
             L LS NA ++SL    F+ L  LE L L    ++ + +  F+ L  L+ L L HN L 
Sbjct: 293 RVLRLSHNA-IASLRPRTFEDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQ 351

Query: 510 EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSK 569
           E+    F  L N+  ++LS N + NL      GL  +  L L  + L   +   F     
Sbjct: 352 EVKVGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFA---- 407

Query: 570 PNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS 629
              S L  L L +N L  +   S    ++L  L L  N+  + P +L  GL  L+ + LS
Sbjct: 408 -GLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHQLFQGLGKLEYLLLS 466

Query: 630 NNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRL 681
           +N+L  +     G L R   L++++N ++A+  +   +  +L+ +NL  N L
Sbjct: 467 HNRLAELPADALGPLQRAFWLDVSHNRLEALPGSLLASLGRLRYLNLRNNSL 518

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Papio hamadryas (taxid: 9557)

>sp|P35858|ALS_HUMAN Insulin-like growth factor-binding protein complex acid labile subunit OS=Homo sapiens GN=IGFALS PE=1 SV=1

 Score =  120 bits (302), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 144/536 (26%), Positives = 220/536 (41%), Gaps = 79/536 (14%)

Query: 212 SEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRIL 271
           + F  L +L  L+L   Q+ ++E   L G +NL  L ++ N+  S+              
Sbjct: 92  AAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLA------------- 138

Query: 272 SMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNS 331
                 +GT     F     L  + L  NRL+ +E G F GL  +  LNLG+N L  L  
Sbjct: 139 ------LGT-----FAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPD 187

Query: 332 DTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLI 391
                 AF GL  +  L L  NRL  L    F G             +L+ LDL+ N L 
Sbjct: 188 -----AAFRGLGSLRELVLAGNRLAYLQPALFSG-----------LAELRELDLSRNALR 231

Query: 392 NLESTGLED--TLDNLNVRDNQITTLSSSA-LNYKLLTKLDLSHNN-------------- 434
            +++        L  L +  N I  ++  A L  K L  LDLSHN               
Sbjct: 232 AIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLG 291

Query: 435 ----------LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
                     +  L P  F ++  L  L L  N  +  L    F+ L +LEVL L    L
Sbjct: 292 LRVLRLSHNAIASLRPRTFKDLHFLEELQLGHN-RIRQLAERSFEGLGQLEVLTLDHNQL 350

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
           + +    F  L N+  + L+ N L  +PE +F+ L  L  L L  + +  +R  +  GL 
Sbjct: 351 QEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLS 410

Query: 545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKL 604
            ++RL L  N L   +      +S    + L EL+L +N+LT+L    F    KL+ L L
Sbjct: 411 GLRRLFLKDNGLVGIE-----EQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLL 465

Query: 605 AFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETC 664
           + N+    P + +  L     +D+S+N+L+ + +     L RLR L+L NN++   +   
Sbjct: 466 SRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTP-- 523

Query: 665 FFNSSQLQIINLSFNRLE-KLPERLFNTFLYTNYDMAPNLVFQSHLSGHRCECAQY 719
                 L+ + L  N  +   P +    F   N    P  V Q+   G  C+   Y
Sbjct: 524 --QPPGLERLWLEGNPWDCGCPLKALRDFALQNPSAVPRFV-QAICEGDDCQPPAY 576

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Homo sapiens (taxid: 9606)

>sp|Q80X72|LRC15_MOUSE Leucine-rich repeat-containing protein 15 OS=Mus musculus GN=Lrrc15 PE=2 SV=1

 Score =  119 bits (298), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 147/287 (51%), Gaps = 7/287 (2%)

Query: 405 LNVRDNQITTLSSSA-LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
           L + +  IT L     LN   L  L +  N L  + P AF N+ +L HL+L+ N  L +L
Sbjct: 58  LQILNTHITELPEDKFLNISALIALKMEKNELANIMPGAFRNLGSLRHLSLANNK-LKNL 116

Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
           PV  F  +  LE L L+   L  I   QF +  NLK L L  N+L  IPE +F +L+ LT
Sbjct: 117 PVRLFQDVNNLETLLLSNNQLVQIQPAQFSQFSNLKELQLYGNNLEYIPEGVFDHLVGLT 176

Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
            L+L NN   +L       L +++ L L  N+L+      F+        +L+EL L  N
Sbjct: 177 KLNLGNNGFTHLSPRVFQHLGNLQVLRLYENRLSDIPMGTFDA-----LGNLQELALQEN 231

Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGY 643
           ++  L P  F  +  L+ L L+ N  ++ P  + + L +L ++ L  N LK +    +G 
Sbjct: 232 QIGTLSPGLFHNNRNLQRLYLSNNHISHLPPGIFMQLPHLNKLTLFGNSLKELSPGVFGP 291

Query: 644 LPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
           +P LR+L L NN+I ++ +  F + +QLQ++ LS N+L  +    FN
Sbjct: 292 MPNLRELWLYNNHITSLPDNAFSHLNQLQVLILSHNQLSYISPGAFN 338

Mus musculus (taxid: 10090)

>sp|Q9HBX8|LGR6_HUMAN Leucine-rich repeat-containing G-protein coupled receptor 6 OS=Homo sapiens GN=LGR6 PE=2 SV=3

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 203/464 (43%), Gaps = 69/464 (14%)

Query: 169 LDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDN 228
           LD S N L  L   LF  H   L+ELRL+ N              F GL +L+IL L +N
Sbjct: 71  LDLSMNNLTELQPGLFH-HLRFLEELRLSGNHLSH-----IPGQAFSGLYSLKILMLQNN 124

Query: 229 QIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLS 288
           Q+  I    L    +L  LR+D N  + +P  S  G  +LR L                 
Sbjct: 125 QLGGIPAEALWELPSLQSLRLDANLISLVPERSFEGLSSLRHL----------------- 167

Query: 289 QRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHIL 348
             WL+      N LT I   A N L  +  + L  NR++ +    FQ      L  + +L
Sbjct: 168 --WLDD-----NALTEIPVRALNNLPALQAMTLALNRISHIPDYAFQ-----NLTSLVVL 215

Query: 349 NLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN----FLINLESTGLEDTLDN 404
           +L  NR+  L + +F+G H            L++LDLN N    F + + + G    L  
Sbjct: 216 HLHNNRIQHLGTHSFEGLH-----------NLETLDLNYNKLQEFPVAIRTLG---RLQE 261

Query: 405 LNVRDNQITTLSSSA-LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
           L   +N I  +   A +   LL  +    N ++ +  +AF  +P L  L+L+    +   
Sbjct: 262 LGFHNNNIKAIPEKAFMGNPLLQTIHFYDNPIQFVGRSAFQYLPKLHTLSLNGAMDIQEF 321

Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
           P         LE+L L   G++ +P     +L  L+ L L+HN + E+P +       L 
Sbjct: 322 P--DLKGTTSLEILTLTRAGIRLLPSGMCQQLPRLRVLELSHNQIEELPSL--HRCQKLE 377

Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
            + L +N I  +   +   L S++ LDLS+N + +   + F+T       SL +L+L +N
Sbjct: 378 EIGLQHNRIWEIGADTFSQLSSLQALDLSWNAIRSIHPEAFST-----LHSLVKLDLTDN 432

Query: 584 ELTYLFPSSFT--IHSKLK---TLKLAFNKFNYFPKELILGLSY 622
           +LT L  +     +H KLK    L  AF+K + FPK  IL + Y
Sbjct: 433 QLTTLPLAGLGGLMHLKLKGNLALSQAFSK-DSFPKLRILEVPY 475

Orphan receptor.

Homo sapiens (taxid: 9606)

>sp|P40197|GPV_HUMAN Platelet glycoprotein V OS=Homo sapiens GN=GP5 PE=1 SV=1

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 175/395 (44%), Gaps = 52/395 (13%)

Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
           G L++ SF     L+R+++  + ++ +  G F+ L K+  L L  N++  L      G  
Sbjct: 63  GVLQSQSFSGMTVLQRLMISDSHISAVAPGTFSDLIKLKTLRLSRNKITHL-----PGAL 117

Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGT-------------HITIFSFFQDFQKLKSLDL 385
            + +  +  L L +N L  ++ + FQ                    S F + + LK LDL
Sbjct: 118 LDKMVLLEQLFLDHNALRGIDQNMFQKLVNLQELALNQNQLDFLPASLFTNLENLKLLDL 177

Query: 386 NGNFLINLEST--GLEDTLDNLNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTA 442
           +GN L +L     G +  L+ L +  N++ +L S  LN    LT+L    N+++ + P A
Sbjct: 178 SGNNLTHLPKGLLGAQAKLERLLLHSNRLVSLDSGLLNSLGALTELQFHRNHIRSIAPGA 237

Query: 443 FTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLC 502
           F  +P L  L LSRN HL+ LP   F     L +L L    L  +P   F E+  L+ L 
Sbjct: 238 FDRLPNLSSLTLSRN-HLAFLPSALFLHSHNLTLLTLFENPLAELPGVLFGEMGGLQELW 296

Query: 503 LAHNHLTEIPEMMFKNLLNLTYLDLS-NNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKG 561
           L    L  +P   F+NL  L YL ++ +  +  L  G+  GL                  
Sbjct: 297 LNRTQLRTLPAAAFRNLSRLRYLGVTLSPRLSALPQGAFQGL------------------ 338

Query: 562 DYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLS 621
                        L+ L L++N LT L         KL+ + L  N+    P+ L   LS
Sbjct: 339 -----------GELQVLALHSNGLTALPDGLLRGLGKLRQVSLRRNRLRALPRALFRNLS 387

Query: 622 YLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNN 656
            L+ + L +NQL+T+    +G LPRL ++ L +N+
Sbjct: 388 SLESVQLDHNQLETLPGDVFGALPRLTEVLLGHNS 422

The GPIb-V-IX complex functions as the vWF receptor and mediates vWF-dependent platelet adhesion to blood vessels. The adhesion of platelets to injured vascular surfaces in the arterial circulation is a critical initiating event in hemostasis.

Homo sapiens (taxid: 9606)

>sp|Q8R5M3|LRC15_RAT Leucine-rich repeat-containing protein 15 OS=Rattus norvegicus GN=Lrrc15 PE=2 SV=1

 Score =  113 bits (283), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 164/366 (44%), Gaps = 38/366 (10%)

Query: 325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLD 384
           ++ K    T   GAF  L  +  L+L  N+L  L               FQD   L+SL 
Sbjct: 83  KMEKNELSTIMPGAFRNLGSLRYLSLANNKLRML-----------PIRVFQDVNNLESLL 131

Query: 385 LNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFT 444
           L+ N L+ ++                Q +  S+       L +L L  NNL+ +   AF 
Sbjct: 132 LSNNQLVQIQPA--------------QFSQFSN-------LRELQLHGNNLESIPEEAFD 170

Query: 445 NVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLA 504
           ++  L  LNL RN+  + L    F  L  L+VL L    L  IP   FD L NL+ L L 
Sbjct: 171 HLVGLTKLNLGRNS-FTHLSPRLFQHLGNLQVLRLHENRLSDIPMGTFDALGNLQELALQ 229

Query: 505 HNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYF 564
            N +  +   +F N  NL  L LSNN+I  L  G    LP + +L L  N L       F
Sbjct: 230 ENQIGTLSPGLFHNNRNLQRLYLSNNHISQLPPGIFMQLPQLNKLTLFGNSLRELSPGVF 289

Query: 565 NTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ 624
                PN   L EL L NN +T L  ++F+  ++L+ L L+ N+  Y       GL+ L+
Sbjct: 290 G--PMPN---LRELWLYNNHITSLADNTFSHLNQLQVLILSHNQLTYISPGAFNGLTNLR 344

Query: 625 EIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKL 684
           E+ L  N L+ +D   +  L  L+ ++L +N +  +  + F N + L  I L  N LE L
Sbjct: 345 ELSLHTNALQDLDSNVFRSLANLQNISLQSNRLRQLPGSIFANVNGLTTIQLQNNNLENL 404

Query: 685 PERLFN 690
           P  +F+
Sbjct: 405 PLGIFD 410

Rattus norvegicus (taxid: 10116)

>sp|Q9WVB4|SLIT3_MOUSE Slit homolog 3 protein OS=Mus musculus GN=Slit3 PE=2 SV=2

 Score =  113 bits (282), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 135/540 (25%), Positives = 219/540 (40%), Gaps = 81/540 (15%)

Query: 213 EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILS 272
           +F GL NLR+L L DNQ+  IE G  +    L  LR++ N+   +P +       L  L 
Sbjct: 80  DFAGLKNLRVLHLEDNQVSIIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLD 139

Query: 273 MAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSD 332
           ++ N+I  +   +F     ++ + L  N ++ IE GAF  L  + IL L  N ++++   
Sbjct: 140 LSENQIQGIPRKAFRGVTGVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVT 199

Query: 333 TFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL-- 390
           +     FN + KI  L L  N L       +   H+   S +     L+     G F   
Sbjct: 200 S-----FNHMPKIRTLRLHSNHL-------YCDCHLAWLSDW-----LRQRRTIGQFTLC 242

Query: 391 ---INLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVP 447
              ++L    + D      V     +   +   N           NN+ +      T +P
Sbjct: 243 MAPVHLRGFSVADVQKKEYVCPGPHSEAPACNANSLSCPSACSCSNNIVDCRGKGLTEIP 302

Query: 448 T-----LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLC 502
                 ++ + L +N+ + S+P G F   KKL+ +D++   +  I    F  L +L  L 
Sbjct: 303 ANLPEGIVEIRLEQNS-IKSIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLV 361

Query: 503 LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGD 562
           L  N +TEIP+ +F  L++L  L L+ N I  LRV +   L ++  L L  NKL T    
Sbjct: 362 LYGNKITEIPKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISKG 421

Query: 563 YFNTKSKPNTSSLEE---------------LNLNNNELTYLFPSSFTIHSKLKTLKLAFN 607
            F       T  L +               L  N  E +    SS    +  +  ++   
Sbjct: 422 LFVPLQSIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSGARCSSPRRLANKRISQIKSK 481

Query: 608 KF---------NYFPKELILGLSYLQE-------IDLSNNQLKTI-------------DD 638
           KF         N F  E  + L   ++       +D SN +L  I             +D
Sbjct: 482 KFRCSGSEDYRNRFSSECFMDLVCPEKCRCEGTIVDCSNQKLARIPSHLPEYTTDLRLND 541

Query: 639 YD---------YGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
            D         +  LP LRK+NL+NN I  + E  F  ++ +Q + L+ N+LE +  R+F
Sbjct: 542 NDISVLEATGIFKKLPNLRKINLSNNRIKEVREGAFDGAAGVQELMLTGNQLETMHGRMF 601

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	719
328712629	1358	PREDICTED: toll-like receptor 13-like [A	0.837	0.443	0.391	1e-124
270001290	1323	tartan/capricious-like protein [Triboliu	0.816	0.443	0.384	1e-117
91091760	1337	PREDICTED: similar to GA20668-PA [Tribol	0.816	0.439	0.384	1e-116
194905866	1395	GG11714 [Drosophila erecta] gi|190655911	0.823	0.424	0.384	1e-115
21358607	1392	CG7896 [Drosophila melanogaster] gi|1618	0.835	0.431	0.381	1e-113
312032497	1210	RT10543p [Drosophila melanogaster] gi|31	0.823	0.489	0.385	1e-113
311692689	1210	RT10542p [Drosophila melanogaster]	0.823	0.489	0.385	1e-113
195503085	1121	GE23905 [Drosophila yakuba] gi|194184605	0.823	0.528	0.383	1e-112
357627007	1323	hypothetical protein KGM_17936 [Danaus p	0.824	0.448	0.355	1e-110
194746084	1407	GF18811 [Drosophila ananassae] gi|190628	0.830	0.424	0.371	1e-110

>gi|328712629|ref|XP_001944209.2| PREDICTED: toll-like receptor 13-like [Acyrthosiphon pisum]

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 289/739 (39%), Positives = 413/739 (55%), Gaps = 137/739 (18%)

Query: 82  ILPMQIFSSSVSS-EPCDTMIDDFPYPCRCKKMSE-SQLAMDCDNVAFPNGEYPTLPYGL 139
           +  + +F+S +S+   C+ +  +F YPC C+++ +   LA++CD V +P G++  LP   
Sbjct: 11  VAALMVFNSCLSTITSCEDLRSEFRYPCVCEELRQIGGLALNCDGVVYP-GDHVNLPKDA 69

Query: 140 NLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADN 199
            ++ F+QR  GH  +P Q+F S+     +LD S N++RRLS+K F+  ++T+++LRLA N
Sbjct: 70  PVLVFTQRNAGHHSVPTQLFPST----VKLDLSQNSIRRLSEKSFNTIQNTVEDLRLAGN 125

Query: 200 LFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPS 259
           L GD+LNPIFS++EFHGL  L  LDLS+N+I ++EEGILKGC +L EL++D NR   IPS
Sbjct: 126 LLGDTLNPIFSSTEFHGLSKLIRLDLSENRISSLEEGILKGCVHLEELKLDGNRLAFIPS 185

Query: 260 VSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHIL 319
            SLNGP  LR LS+  NRI +++  SFLSQ+ L +I L  NR+  IE GAF GL+ +  L
Sbjct: 186 TSLNGPETLRTLSIKNNRIDSIQQGSFLSQKSLIKIDLSSNRVNNIEIGAFEGLSVLKQL 245

Query: 320 NLGYNRLNKLNSDTFQGG-------------------AFNGLAKIHILNLGYNRLNKLNS 360
            L  NRL+K NSD F G                    A      + ILNL  N + KL +
Sbjct: 246 LLSENRLSKFNSDVFYGAEKLDKLDISNNFIVEFPSLALRKFDNLKILNLSSNLIQKLEN 305

Query: 361 DTFQGTHITIFS----------FFQDFQKLKSLDLNGNF-----------LINLESTGLE 399
                  +   S           F+  +KLK L+L  N            L NLES  LE
Sbjct: 306 SQLTSLEVLDVSRNNIGSISPGTFKSLKKLKILNLAVNMLRTVEDDAFEGLTNLESLSLE 365

Query: 400 DT---------------LDNLNVRDNQITTLSSSAL------------------------ 420
           D                L  L +  N+I  LSS+ L                        
Sbjct: 366 DNNILLIPATALSKLPRLSKLRLDFNRIAALSSNILRGLSEILIELGLSRNVIREIPPDV 425

Query: 421 --NYKLLTKLDLSHNNLKELEPTAFTNVP-TLLHLNLS---------------------- 455
             ++KLL  LDLS N L  +EP+ F+ +  TL HLNL                       
Sbjct: 426 FQDFKLLKVLDLSGNLLLSVEPSTFSGLEDTLEHLNLQGNRIASLSSEPINLQKLKTLDL 485

Query: 456 -------------------------RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQY 490
                                     N HL+ +PV  F PL +L+ LD++ T +K +   
Sbjct: 486 SYNQLKEIPRHTFTVMSSLSSLNLSHNPHLALIPVSVFHPLTQLQKLDISFTSIKVLSPE 545

Query: 491 QFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLD 550
            F +  +L +L + +N +TE+PE MF++L NL  LDLS N I N+R+GS  GL S++ ++
Sbjct: 546 LFFKTSSLTHLYIQNNGITELPETMFQSLTNLVTLDLSENQISNIRIGSFMGLSSIRYVN 605

Query: 551 LSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN 610
           LS NKL++FKG+YF TK + N + LEE++++NN+++YLFPS+F +H  +K +K++ NKFN
Sbjct: 606 LSKNKLSSFKGEYFITK-RSNGTPLEEIDMSNNQISYLFPSTFKVHPSIKVIKVSNNKFN 664

Query: 611 YFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQ 670
           +FP ELI GL+ LQE+DLS N LKT++++D+  LP+LRKLNL NN ID ISET F NS+Q
Sbjct: 665 FFPSELIAGLANLQEVDLSKNSLKTLEEFDFAGLPQLRKLNLANNQIDTISETTFHNSTQ 724

Query: 671 LQIINLSFNRLEKLPERLF 689
           LQ I L+ N LE++ ER F
Sbjct: 725 LQYIKLANNNLERIGERTF 743

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001290|gb|EEZ97737.1| tartan/capricious-like protein [Tribolium castaneum]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 282/734 (38%), Positives = 401/734 (54%), Gaps = 147/734 (20%)

Query: 96  PCDTMIDDFPYPCRCKKMSESQLAMD--------CDNVAFPNGEYPTLPYGLNLVTFSQR 147
           PC  +  D  +PC C  +   + A+D        CD V FP G+ P LP+G  +V+F QR
Sbjct: 20  PCSEISRDLRFPCTCS-LGPPEPALDNNPAISVNCDRVVFP-GDLPALPFGAPIVSFRQR 77

Query: 148 WVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNP 207
           W GHQ LP QIFSS+ +P+R +D SGN+LRRL+++L    + TL ELRL+DNL GD+LNP
Sbjct: 78  WAGHQALPTQIFSSTGLPLRSIDLSGNSLRRLTERLLQALQPTLVELRLSDNLLGDTLNP 137

Query: 208 IFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRA 267
           IFSTSEF GL +L++LDLS N I+A+EEGI +GCDNL EL ++ N  TS+PS SLNGP++
Sbjct: 138 IFSTSEFRGLNHLQVLDLSGNIIRALEEGIFEGCDNLQELYLERNSLTSVPSTSLNGPKS 197

Query: 268 LRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN 327
           L++LS+A NRI +LK+ +F +Q  LE + L  N +  IEGGA +GL  +  L LG+N+L 
Sbjct: 198 LKMLSLASNRITSLKSAAFEAQPNLETVDLTLNGIGGIEGGALSGLKNLKTLKLGHNKLT 257

Query: 328 KLNSDTFQGG-------------------AFNGLAKIHILNLGYNRLNKL-NSDTFQGTH 367
           + NSD FQG                    A      +  LNL  N +  L N+D      
Sbjct: 258 RFNSDVFQGASNLKNLDLSENFITEFPTIALRAFKDLKYLNLSSNLVQSLDNNDLLNLVG 317

Query: 368 ITIFSF------------FQDFQKLKSLDLNGNFLINLESTGLE--DTLDNLNVRDNQIT 413
           +                 F   ++L+ LD++ N L  +E    E  D L++LN++DN I 
Sbjct: 318 LYYLDLSRNNIANIAPGTFLGLKQLRKLDISVNSLRTIEDDAFEGLDNLEHLNLKDNNIL 377

Query: 414 TLSSSALN--------------------------YKLLTKLDLSHNNLKELEPTAFTNVP 447
            + +SAL                            + +T L L+ N ++EL P +F +  
Sbjct: 378 LIPASALGRLPKLSSLQLDYNRVAALSGDILRSIAEKVTSLVLAKNVIRELPPASFQHFQ 437

Query: 448 TLLHLNLSRN-------------------AHLS----SLPVGGFDPLKKLEVLDLAATGL 484
            L HL+L+RN                    HL     S   G    L KLE LDL+   L
Sbjct: 438 HLSHLDLTRNLLTTLNSDAFVGLETTLKELHLPQNKISTITGPTLSLLKLETLDLSDNHL 497

Query: 485 KSIPQYQFDELLNLKYLCLAHN-HLTEIP------------------------------- 512
             + +  F  L  L++L L+HN HL  IP                               
Sbjct: 498 TELSRNVFGMLPQLRFLNLSHNSHLASIPSNLLHKLPNLEVFDLSYTGLRILTGDFFAKS 557

Query: 513 -----------------EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
                            + +F NL NLT +DLS+N+I N++ G+   + ++K L L  N+
Sbjct: 558 SKLRRVYLHNNAISELGDGVFANLPNLTSIDLSSNHINNIKQGAFVNIMNLKELVLRGNQ 617

Query: 556 LTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615
           L++FKG++FNT      +SLE L++++N+L+YLFPSSF IH +LK LK + NKFN+FP E
Sbjct: 618 LSSFKGEFFNTG-----TSLELLDISHNQLSYLFPSSFRIHPRLKILKASNNKFNFFPAE 672

Query: 616 LILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIIN 675
           LI  L +LQ +DLS+N LKT+++ D+  LPRLR L L NN ++ +SE  F NS+QLQ+I+
Sbjct: 673 LIATLQFLQVVDLSHNDLKTVEELDFARLPRLRVLLLRNNKLEFVSEMAFHNSTQLQVID 732

Query: 676 LSFNRLEKLPERLF 689
           LS+N+LE+L ER+F
Sbjct: 733 LSYNKLERLAERIF 746

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091760|ref|XP_968875.1| PREDICTED: similar to GA20668-PA [Tribolium castaneum]

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 282/734 (38%), Positives = 401/734 (54%), Gaps = 147/734 (20%)

Query: 96  PCDTMIDDFPYPCRCKKMSESQLAMD--------CDNVAFPNGEYPTLPYGLNLVTFSQR 147
           PC  +  D  +PC C  +   + A+D        CD V FP G+ P LP+G  +V+F QR
Sbjct: 34  PCSEISRDLRFPCTCS-LGPPEPALDNNPAISVNCDRVVFP-GDLPALPFGAPIVSFRQR 91

Query: 148 WVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNP 207
           W GHQ LP QIFSS+ +P+R +D SGN+LRRL+++L    + TL ELRL+DNL GD+LNP
Sbjct: 92  WAGHQALPTQIFSSTGLPLRSIDLSGNSLRRLTERLLQALQPTLVELRLSDNLLGDTLNP 151

Query: 208 IFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRA 267
           IFSTSEF GL +L++LDLS N I+A+EEGI +GCDNL EL ++ N  TS+PS SLNGP++
Sbjct: 152 IFSTSEFRGLNHLQVLDLSGNIIRALEEGIFEGCDNLQELYLERNSLTSVPSTSLNGPKS 211

Query: 268 LRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN 327
           L++LS+A NRI +LK+ +F +Q  LE + L  N +  IEGGA +GL  +  L LG+N+L 
Sbjct: 212 LKMLSLASNRITSLKSAAFEAQPNLETVDLTLNGIGGIEGGALSGLKNLKTLKLGHNKLT 271

Query: 328 KLNSDTFQGG-------------------AFNGLAKIHILNLGYNRLNKL-NSDTFQGTH 367
           + NSD FQG                    A      +  LNL  N +  L N+D      
Sbjct: 272 RFNSDVFQGASNLKNLDLSENFITEFPTIALRAFKDLKYLNLSSNLVQSLDNNDLLNLVG 331

Query: 368 ITIFSF------------FQDFQKLKSLDLNGNFLINLESTGLE--DTLDNLNVRDNQIT 413
           +                 F   ++L+ LD++ N L  +E    E  D L++LN++DN I 
Sbjct: 332 LYYLDLSRNNIANIAPGTFLGLKQLRKLDISVNSLRTIEDDAFEGLDNLEHLNLKDNNIL 391

Query: 414 TLSSSALN--------------------------YKLLTKLDLSHNNLKELEPTAFTNVP 447
            + +SAL                            + +T L L+ N ++EL P +F +  
Sbjct: 392 LIPASALGRLPKLSSLQLDYNRVAALSGDILRSIAEKVTSLVLAKNVIRELPPASFQHFQ 451

Query: 448 TLLHLNLSRN-------------------AHLS----SLPVGGFDPLKKLEVLDLAATGL 484
            L HL+L+RN                    HL     S   G    L KLE LDL+   L
Sbjct: 452 HLSHLDLTRNLLTTLNSDAFVGLETTLKELHLPQNKISTITGPTLSLLKLETLDLSDNHL 511

Query: 485 KSIPQYQFDELLNLKYLCLAHN-HLTEIP------------------------------- 512
             + +  F  L  L++L L+HN HL  IP                               
Sbjct: 512 TELSRNVFGMLPQLRFLNLSHNSHLASIPSNLLHKLPNLEVFDLSYTGLRILTGDFFAKS 571

Query: 513 -----------------EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
                            + +F NL NLT +DLS+N+I N++ G+   + ++K L L  N+
Sbjct: 572 SKLRRVYLHNNAISELGDGVFANLPNLTSIDLSSNHINNIKQGAFVNIMNLKELVLRGNQ 631

Query: 556 LTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615
           L++FKG++FNT      +SLE L++++N+L+YLFPSSF IH +LK LK + NKFN+FP E
Sbjct: 632 LSSFKGEFFNTG-----TSLELLDISHNQLSYLFPSSFRIHPRLKILKASNNKFNFFPAE 686

Query: 616 LILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIIN 675
           LI  L +LQ +DLS+N LKT+++ D+  LPRLR L L NN ++ +SE  F NS+QLQ+I+
Sbjct: 687 LIATLQFLQVVDLSHNDLKTVEELDFARLPRLRVLLLRNNKLEFVSEMAFHNSTQLQVID 746

Query: 676 LSFNRLEKLPERLF 689
           LS+N+LE+L ER+F
Sbjct: 747 LSYNKLERLAERIF 760

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194905866|ref|XP_001981273.1| GG11714 [Drosophila erecta] gi|190655911|gb|EDV53143.1| GG11714 [Drosophila erecta]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 283/736 (38%), Positives = 388/736 (52%), Gaps = 144/736 (19%)

Query: 96  PCDTMIDDFPYPCRCKKM---SESQL---AMDCDNVAFPNGEYPTLPYGLNLVTFSQRWV 149
           PC  +      PCRC  +   +  QL   AMDCD V F +G+ P LPYG  +V ++QR  
Sbjct: 33  PCPELSPALRLPCRCNVVPFAATGQLGAVAMDCDRVVF-HGDAPQLPYGAPIVAYTQRHS 91

Query: 150 GHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIF 209
           G Q+LP Q F    + I  LD S N +RR+ +K F   +D+L ELRLA+NL GD+LNPIF
Sbjct: 92  GQQVLPAQTFGQLKLTIEELDLSYNLIRRIPEKAFDGLKDSLNELRLANNLLGDNLNPIF 151

Query: 210 STSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALR 269
           ST+E H L NLRILDLS N+IK IEEG+LKGC +L E  +D N  TS+P+ SLNGP ALR
Sbjct: 152 STAELHVLKNLRILDLSGNKIKLIEEGLLKGCVDLKEFYIDRNSLTSVPTNSLNGPSALR 211

Query: 270 ILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKL 329
            LS+  N+IG+L  DSF +QR LE I LR N + TI+  AF GL KI  + L  NR++ L
Sbjct: 212 HLSLRQNQIGSLLGDSFNAQRQLEIIDLRHNVIRTIDSQAFKGLQKIREIKLAGNRISHL 271

Query: 330 NSDTFQG-------------------GAFNGLAKIHILNLGYNRLNKLNSDTFQGTHI-- 368
           NSD F+                     A   +A +  LNL  N L +L+    Q      
Sbjct: 272 NSDVFEKLQSLQKLDLSENFFSQFPTVALAAVAGLKHLNLSSNMLQQLDYTHMQVVRSLE 331

Query: 369 -------TIFSF----FQDFQKLKSLDLNGNFLINLESTGLE--DTLDNLNVRDNQITTL 415
                  TI S     F++   LK LDL+ N L  +E   LE  D+L  L ++DN I  +
Sbjct: 332 SLDISRNTITSITPGTFREMGALKHLDLSLNSLRTIEDDALEGLDSLQTLVIKDNNILLV 391

Query: 416 SSSA---------------------------LNYKLLTKLDLSHNNLKELEPTAFTNVPT 448
             SA                           L    +T L LS N ++EL P +F    +
Sbjct: 392 PGSALGRLPQLTSLHLDYNRVAALSAEILGSLQASDITTLSLSRNVIRELPPGSFQMFSS 451

Query: 449 LLHLNLSRN----------AHLSSLPVG-----------GFDP--LKKLEVLDLAATGLK 485
           L  L+LS N          A L S  +            G  P  L +L  LDL+   L 
Sbjct: 452 LHTLDLSGNSLAVINADTFAGLESTLMALKLSQNRLTGLGGAPWVLPELRSLDLSGNSLT 511

Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK---------------------------- 517
            +P   F+EL NL+ L L+ NHLT +   +FK                            
Sbjct: 512 ELPSSIFEELENLQSLNLSGNHLTPLTGAIFKPLDRLQVIDLSRCSIRQISGDLLAGLQD 571

Query: 518 --------------------NLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
                               NL N++ +DLSNN I ++R G+   +  +++LDL  N+L+
Sbjct: 572 LKHIYLNDNQLQELQDGSFVNLWNISSIDLSNNRIGSIRSGAFVNVMKLQKLDLHGNQLS 631

Query: 558 TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI 617
            FKG+YFNT      + +EEL++++N+L+YLFPSSF IH +L+ ++ A NKF++FP ELI
Sbjct: 632 AFKGEYFNTG-----TGIEELDISDNQLSYLFPSSFRIHPRLREIRAANNKFSFFPAELI 686

Query: 618 LGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLS 677
             L YL+ IDLS+NQLKTI++ D+  LPRLR L ++NN +D +SE  F NS+QLQI++L+
Sbjct: 687 SSLQYLEHIDLSHNQLKTIEELDFARLPRLRVLLVSNNQLDMVSEMAFHNSTQLQILDLA 746

Query: 678 FNRLEKLPERLFNTFL 693
            N L+++ ER F   +
Sbjct: 747 HNNLDRIGERTFEGLV 762

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21358607|ref|NP_651754.1| CG7896 [Drosophila melanogaster] gi|16184821|gb|AAL13838.1| LD30178p [Drosophila melanogaster] gi|23172637|gb|AAF56980.2| CG7896 [Drosophila melanogaster]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 288/754 (38%), Positives = 402/754 (53%), Gaps = 153/754 (20%)

Query: 78  VGHQILPMQIFSSSVSSEPCDTMIDDFPYPCRCKKM---SESQL---AMDCDNVAFPNGE 131
           +GH IL  +         PC  +      PCRC  +   +  QL   AMDCD V F +G+
Sbjct: 24  LGHPILAWR---------PCPELSPALRLPCRCNVVPFAATGQLGAVAMDCDRVVF-HGD 73

Query: 132 YPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTL 191
            P LPYG  +V ++QR  G Q+LP Q F    + I  LD S N +RR+ +K F   +D+L
Sbjct: 74  APQLPYGAPIVAYTQRHSGQQVLPAQTFGQLKLTIEELDLSYNLIRRIPEKAFDGLKDSL 133

Query: 192 QELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDH 251
            ELRLA+NL GD+LNPIFST+E H L NLR+LDLS N+IK IEEG+LKGC +L E  +D 
Sbjct: 134 NELRLANNLLGDNLNPIFSTAELHVLKNLRLLDLSGNKIKLIEEGLLKGCMDLKEFYIDR 193

Query: 252 NRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
           N  TS+P+ SLNGP ALR LS+  N+IG+L ADSF +QR LE I LR N + +I+  AF 
Sbjct: 194 NSLTSVPTNSLNGPSALRHLSLRQNQIGSLLADSFNAQRQLEIIDLRHNVIRSIDSLAFK 253

Query: 312 GLAKIHILNLGYNRLNKLNSDTFQG--------------GAFNGLAKIHI-----LNLGY 352
           GL KI  + L  NR++ LNSD F+               G F  +A   +     LNL  
Sbjct: 254 GLQKIREIKLAGNRISHLNSDVFEKLQSLQKLDLSENFFGQFPTVALAAVPGLKHLNLSS 313

Query: 353 NRLNKLNS------------DTFQGTHITIF-SFFQDFQKLKSLDLNGNFLINLESTGLE 399
           N L +L+             D  + T  TI    F++   LK LDL+ N L  +E   LE
Sbjct: 314 NMLQQLDYTHMQVVRSLESLDISRNTITTITPGTFREMGALKYLDLSLNSLRTIEDDALE 373

Query: 400 --DTLDNLNVRDN--------------QITTLS-----SSALNYKLL--------TKLDL 430
             D+L  L ++DN              Q+T+L       +AL+ ++L        T L L
Sbjct: 374 GLDSLQTLIIKDNNILLVPGSALGRLPQLTSLQLDYNRVAALSAEILGSLQAGDITTLSL 433

Query: 431 SHNNLKELEPTAFTNVPTLLHLNLSRN----------AHLSSLPVG-----------GFD 469
           S N ++EL P +F    +L  L+LS N          A L S  +            G  
Sbjct: 434 SRNVIRELPPGSFQMFSSLHTLDLSGNSLAVINADTFAGLESTLMALKLSQNRLTGLGGA 493

Query: 470 P--LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK---------- 517
           P  L +L  LDL+   L  +P   F+EL N++ L L+ NHLT +   +FK          
Sbjct: 494 PWVLPELRSLDLSGNTLTELPSTIFEELENVQSLNLSGNHLTPLTGALFKPLDRLQVIDL 553

Query: 518 --------------------------------------NLLNLTYLDLSNNNIVNLRVGS 539
                                                 NL N++ +DLSNN I ++R G+
Sbjct: 554 SGCNIRQISGDLLAGLQDLKHIYLNDNQLQELQDGSFVNLWNISSIDLSNNRIGSIRSGA 613

Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKL 599
              +  +++LDL  N+L+ FKG+YFNT      + +EEL++++N+L+YLFPSSF IH +L
Sbjct: 614 FVNVMKLQKLDLHGNQLSAFKGEYFNTG-----TGIEELDISDNQLSYLFPSSFRIHPRL 668

Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDA 659
           + ++ A NKF++FP ELI  L YL+ IDLS+NQLKTI++ D+  LPRLR L + NN +D 
Sbjct: 669 REIRAANNKFSFFPAELISTLQYLEHIDLSHNQLKTIEELDFARLPRLRVLLVANNQLDM 728

Query: 660 ISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693
           +SE  F NS+QLQI++L+ N L+++ ER F   +
Sbjct: 729 VSEMAFHNSTQLQILDLAHNNLDRIGERTFEGLV 762

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312032497|gb|ADQ26804.1| RT10543p [Drosophila melanogaster] gi|312032501|gb|ADQ26806.1| RT10545p [Drosophila melanogaster]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 284/736 (38%), Positives = 396/736 (53%), Gaps = 144/736 (19%)

Query: 96  PCDTMIDDFPYPCRCKKM---SESQL---AMDCDNVAFPNGEYPTLPYGLNLVTFSQRWV 149
           PC  +      PCRC  +   +  QL   AMDCD V F +G+ P LPYG  +V ++QR  
Sbjct: 3   PCPELSPALRLPCRCNVVPFAATGQLGAVAMDCDRVVF-HGDAPQLPYGAPIVAYTQRHS 61

Query: 150 GHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIF 209
           G Q+LP Q F    + I  LD S N +RR+ +K F   +D+L ELRLA+NL GD+LNPIF
Sbjct: 62  GQQVLPAQTFGQLKLTIEELDLSYNLIRRIPEKAFDGLKDSLNELRLANNLLGDNLNPIF 121

Query: 210 STSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALR 269
           ST+E H L NLR+LDLS N+IK IEEG+LKGC +L E  +D N  TS+P+ SLNGP ALR
Sbjct: 122 STAELHVLKNLRLLDLSGNKIKLIEEGLLKGCMDLKEFYIDRNSLTSVPTNSLNGPSALR 181

Query: 270 ILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKL 329
            LS+  N+IG+L ADSF +QR LE I LR N + +I+  AF GL KI  + L  NR++ L
Sbjct: 182 HLSLRQNQIGSLLADSFNAQRQLEIIDLRHNVIRSIDSLAFKGLQKIREIKLAGNRISHL 241

Query: 330 NSDTFQG--------------GAFNGLAKIHI-----LNLGYNRLNKLNS---------- 360
           NSD F+               G F  +A   +     LNL  N L +L+           
Sbjct: 242 NSDVFEKLQSLQKLDLSENFFGQFPTVALAAVPGLKHLNLSSNMLQQLDYTHMQVVRSLE 301

Query: 361 --DTFQGTHITIF-SFFQDFQKLKSLDLNGNFLINLESTGLE--DTLDNLNVRDN----- 410
             D  + T  TI    F++   LK LDL+ N L  +E   LE  D+L  L ++DN     
Sbjct: 302 SLDISRNTITTITPGTFREMGALKYLDLSLNSLRTIEDDALEGLDSLQTLIIKDNNILLV 361

Query: 411 ---------QITTLS-----SSALNYKLL--------TKLDLSHNNLKELEPTAFTNVPT 448
                    Q+T+L       +AL+ ++L        T L LS N ++EL P +F    +
Sbjct: 362 PGSALGRLPQLTSLQLDYNRVAALSAEILGSLQAGDITTLSLSRNVIRELPPGSFQMFSS 421

Query: 449 LLHLNLSRN----------AHLSSLPVG-----------GFDP--LKKLEVLDLAATGLK 485
           L  L+LS N          A L S  +            G  P  L +L  LDL+   L 
Sbjct: 422 LHTLDLSGNSLAVINADTFAGLESTLMALKLSQNRLTGLGGAPWVLPELRSLDLSGNTLT 481

Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK---------------------------- 517
            +P   F+EL N++ L L+ NHLT +   +FK                            
Sbjct: 482 ELPSTIFEELENVQSLNLSGNHLTPLTGALFKPLDRLQVIDLSGCNIRQISGDLLAGLQD 541

Query: 518 --------------------NLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
                               NL N++ +DLSNN I ++R G+   +  +++LDL  N+L+
Sbjct: 542 LKHIYLNDNQLQELQDGSFVNLWNISSIDLSNNRIGSIRSGAFVNVMKLQKLDLHGNQLS 601

Query: 558 TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI 617
            FKG+YFNT      + +EEL++++N+L+YLFPSSF IH +L+ ++ A NKF++FP ELI
Sbjct: 602 AFKGEYFNTG-----TGIEELDISDNQLSYLFPSSFRIHPRLREIRAANNKFSFFPAELI 656

Query: 618 LGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLS 677
             L YL+ IDLS+NQLKTI++ D+  LPRLR L + NN +D +SE  F NS+QLQI++L+
Sbjct: 657 STLQYLEHIDLSHNQLKTIEELDFARLPRLRVLLVANNQLDMVSEMAFHNSTQLQILDLA 716

Query: 678 FNRLEKLPERLFNTFL 693
            N L+++ ER F   +
Sbjct: 717 HNNLDRIGERTFEGLV 732

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|311692689|gb|ADP95695.1| RT10542p [Drosophila melanogaster]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 284/736 (38%), Positives = 396/736 (53%), Gaps = 144/736 (19%)

Query: 96  PCDTMIDDFPYPCRCKKM---SESQL---AMDCDNVAFPNGEYPTLPYGLNLVTFSQRWV 149
           PC  +      PCRC  +   +  QL   AMDCD V F +G+ P LPYG  +V ++QR  
Sbjct: 3   PCPELSPALRLPCRCNVVPFAATGQLGAVAMDCDRVVF-HGDAPQLPYGAPIVAYTQRHS 61

Query: 150 GHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIF 209
           G Q+LP Q F    + I  LD S N +RR+ +K F   +D+L ELRLA+NL GD+LNPIF
Sbjct: 62  GQQVLPAQTFGQLKLTIEELDLSYNLIRRIPEKAFDGLKDSLNELRLANNLLGDNLNPIF 121

Query: 210 STSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALR 269
           ST+E H L NLR+LDLS N+IK IEEG+LKGC +L E  +D N  TS+P+ SLNGP ALR
Sbjct: 122 STAELHVLKNLRLLDLSGNKIKLIEEGLLKGCMDLKEFYIDRNSLTSVPTNSLNGPSALR 181

Query: 270 ILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKL 329
            LS+  N+IG+L ADSF +QR LE I LR N + +I+  AF GL KI  + L  NR++ L
Sbjct: 182 HLSLRQNQIGSLLADSFNAQRQLEIIDLRHNVIRSIDSLAFKGLQKIREIKLAGNRISHL 241

Query: 330 NSDTFQG--------------GAFNGLAKIHI-----LNLGYNRLNKLNS---------- 360
           NSD F+               G F  +A   +     LNL  N L +L+           
Sbjct: 242 NSDVFEKLQSLQKLDLSENFFGQFPTVALAAVPGLKHLNLSSNMLQQLDYTHMQVVRSLE 301

Query: 361 --DTFQGTHITIF-SFFQDFQKLKSLDLNGNFLINLESTGLE--DTLDNLNVRDN----- 410
             D  + T  TI    F++   LK LDL+ N L  +E   LE  D+L  L ++DN     
Sbjct: 302 SLDISRNTITTITPGTFREMGALKYLDLSLNSLRTIEDDALEGLDSLQTLIIKDNNILLV 361

Query: 411 ---------QITTLS-----SSALNYKLL--------TKLDLSHNNLKELEPTAFTNVPT 448
                    Q+T+L       +AL+ ++L        T L LS N ++EL P +F    +
Sbjct: 362 PGSALGRLPQLTSLQLDYNRVAALSAEILGSLQAGDITTLSLSRNVIRELPPGSFQMFSS 421

Query: 449 LLHLNLSRN----------AHLSSLPVG-----------GFDP--LKKLEVLDLAATGLK 485
           L  L+LS N          A L S  +            G  P  L +L  LDL+   L 
Sbjct: 422 LHTLDLSGNSLAVINADTFAGLESTLMALKLSQNRLTGLGGAPWVLPELRSLDLSGNTLT 481

Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK---------------------------- 517
            +P   F+EL N++ L L+ NHLT +   +FK                            
Sbjct: 482 ELPSTIFEELENVQSLNLSGNHLTPLTGALFKPLDRLQVIDLSGCNIRQISGDLLAGLQD 541

Query: 518 --------------------NLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
                               NL N++ +DLSNN I ++R G+   +  +++LDL  N+L+
Sbjct: 542 LKHIYLNDNQLQELQDGSFVNLWNISSIDLSNNRIGSIRSGAFVNVMKLQKLDLHGNQLS 601

Query: 558 TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI 617
            FKG+YFNT      + +EEL++++N+L+YLFPSSF IH +L+ ++ A NKF++FP ELI
Sbjct: 602 AFKGEYFNTG-----TGIEELDISDNQLSYLFPSSFRIHPRLREIRAANNKFSFFPAELI 656

Query: 618 LGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLS 677
             L YL+ IDLS+NQLKTI++ D+  LPRLR L + NN +D +SE  F NS+QLQI++L+
Sbjct: 657 STLQYLEHIDLSHNQLKTIEELDFARLPRLRVLLVANNQLDMVSEMAFHNSTQLQILDLA 716

Query: 678 FNRLEKLPERLFNTFL 693
            N L+++ ER F   +
Sbjct: 717 HNNLDRIGERTFEGLV 732

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195503085|ref|XP_002098504.1| GE23905 [Drosophila yakuba] gi|194184605|gb|EDW98216.1| GE23905 [Drosophila yakuba]

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 282/736 (38%), Positives = 388/736 (52%), Gaps = 144/736 (19%)

Query: 96  PCDTMIDDFPYPCRCKKM---SESQL---AMDCDNVAFPNGEYPTLPYGLNLVTFSQRWV 149
           PC  +      PCRC  +   +  QL   AMDCD V F +G+ P LPYG  +V ++QR  
Sbjct: 29  PCPELSPALRLPCRCNVVPFAATGQLGAVAMDCDRVVF-HGDAPQLPYGAPIVAYTQRHS 87

Query: 150 GHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIF 209
           G Q+LP Q F    + I  LD S N +RR+ +K F   +D+L ELRLA+NL GD+LNPIF
Sbjct: 88  GQQVLPAQTFGQLKLTIEELDLSYNLIRRIPEKAFDGLKDSLNELRLANNLLGDNLNPIF 147

Query: 210 STSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALR 269
           ST+E H L NLRILDLS N+IK IEEG+LKGC +L E  +D N  TS+PS SLNGP ALR
Sbjct: 148 STAELHVLKNLRILDLSGNKIKLIEEGLLKGCVDLKEFYIDRNSLTSVPSNSLNGPSALR 207

Query: 270 ILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKL 329
            LS+  N+IG+L  DSF +QR LE I LR N + +I+   F GL KI  + L  NR++ L
Sbjct: 208 HLSLRQNQIGSLLGDSFNAQRQLEIIDLRHNVIRSIDSQTFKGLQKIREIKLAGNRISHL 267

Query: 330 NSDTFQG-------------------GAFNGLAKIHILNLGYNRLNKLNSDTFQGTHI-- 368
           NSD F+                     A   ++ +  LNL  N L +L+    Q      
Sbjct: 268 NSDVFEKLQSLQKLDLSENFFSQFPTVALAAVSGLKHLNLSSNMLQQLDYTHMQVVRSLE 327

Query: 369 -------TIFSF----FQDFQKLKSLDLNGNFLINLESTGLE--DTLDNLNVRDNQITTL 415
                  TI S     F++   LK LDL+ N L  +E   LE  D+L  L ++DN I  +
Sbjct: 328 SLDISRNTITSITPGTFREMGALKYLDLSLNSLRTIEDDALEGLDSLQTLVIKDNNILLV 387

Query: 416 SSSA-----------LNYKL----------------LTKLDLSHNNLKELEPTAFTNVPT 448
             SA           L+Y                  +T L LS N ++EL P +F    +
Sbjct: 388 PGSALGRLPQLTSLHLDYNRVAALSAEILGSLQAGDITTLSLSRNVIRELPPGSFQMFSS 447

Query: 449 LLHLNLSRN----------AHLSSLPVG-----------GFDP--LKKLEVLDLAATGLK 485
           L  L+LS N          A L S  +            G  P  L +L  LDL+   L 
Sbjct: 448 LHTLDLSGNSLALINADTFAGLESTLMALKLSQNRLTGLGGAPWVLPELRSLDLSGNTLT 507

Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK---------------------------- 517
            +P   F+EL NL+ L L+ NHL  +   +FK                            
Sbjct: 508 ELPSSIFEELENLQSLNLSGNHLNPLTGALFKPLDRLQVIDLSRCNIRQISGDLLAGLQD 567

Query: 518 --------------------NLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
                               NL N++ +DLSNN I ++R G+   +  ++RLDL  N+L+
Sbjct: 568 LKHIYLNDNQLQELQDGSFVNLWNISSIDLSNNRIGSIRSGAFVNVMKLQRLDLHGNQLS 627

Query: 558 TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI 617
            FKG+YFNT      + +EEL++++N+L+YLFPSSF IH +L+ ++ A NKF++FP ELI
Sbjct: 628 AFKGEYFNTG-----TGIEELDISDNQLSYLFPSSFRIHPRLREIRAANNKFSFFPAELI 682

Query: 618 LGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLS 677
             L YL+ IDLS+NQLKTI++ D+  LPRLR L ++NN +D +SE  F NS+QLQI++L+
Sbjct: 683 SSLQYLEHIDLSHNQLKTIEELDFARLPRLRVLLVSNNQLDMVSEMAFHNSTQLQILDLA 742

Query: 678 FNRLEKLPERLFNTFL 693
            N L+++ ER F   +
Sbjct: 743 HNNLDRIGERTFEGLV 758

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357627007|gb|EHJ76865.1| hypothetical protein KGM_17936 [Danaus plexippus]

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 270/760 (35%), Positives = 403/760 (53%), Gaps = 167/760 (21%)

Query: 96  PCDTMIDDFPYPCRCKKMSESQLA----MDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGH 151
           PC  + DD  YPCRC+   +  L     M+CD+V F  G++P LPYG  +V+FSQRW G 
Sbjct: 20  PCSELNDDLRYPCRCRVQVDRALQLRILMNCDHVVFA-GDFPPLPYGAPIVSFSQRWAGQ 78

Query: 152 QILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFST 211
           Q LP QIFSS  +P++ LDFS N+LRRL D+L +  +  + ++ L DNL GD+LNPIFST
Sbjct: 79  QSLPTQIFSSYGLPLKELDFSHNSLRRLPDRLLAGIKGNITKVVLEDNLLGDNLNPIFST 138

Query: 212 SEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRIL 271
           +EFH L  L  LDLS N I+ +EEG+L GCD L  LR++ N    +PS SLNGP++L++L
Sbjct: 139 AEFHNLPALEELDLSGNNIRGLEEGLLIGCDVLKVLRLNRNNMNFVPSSSLNGPQSLKVL 198

Query: 272 SMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNS 331
           S+  NRIG ++  +F+SQ+ L+ I L GN ++TIEGGAF GL  +  L+LG NRL+K NS
Sbjct: 199 SLRENRIGIIRQATFISQKSLQEIDLHGNMISTIEGGAFIGLKGLESLDLGRNRLSKFNS 258

Query: 332 DTFQG--------------GAF-----------------------------NGLAKIHIL 348
           D FQG              G F                             N L+ + +L
Sbjct: 259 DVFQGIENLEKLDLSENFIGDFPTVALKLFAGLKHLNMSSNMITNMDHSHLNALSALVVL 318

Query: 349 NLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED--TLDNLN 406
           +L  N L KL+  TF G             +LK LD+  N L  +E    +   +L+ L 
Sbjct: 319 DLSRNNLVKLSPGTFVG-----------LTELKYLDIGVNSLRTVEDDAFDGLTSLETLL 367

Query: 407 VRDNQITTLSSSALN-----------YKLLTKLD---------------LSHNNLKELEP 440
           +RDN I  + ++AL+           +  +T L                LS N ++EL P
Sbjct: 368 LRDNNILLIPAAALSRLPSLTSIHLGFNRVTALSSDILRAVSEGINSLVLSRNVIRELPP 427

Query: 441 TAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKK------------------------LEV 476
            AF +   + HL+LS N  L+S+    F  L+                         L  
Sbjct: 428 AAFEHFKYIRHLDLSGNL-LNSITADVFSGLETTLEFLSLSQNRILGFTGEYLKFVNLWF 486

Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHN-HLTEIPEMMF---KNLL------------ 520
           LD++   +  IP   F+ + +L +L ++HN H+  +P+ +F   + LL            
Sbjct: 487 LDISGNQISEIPVNAFESIKSLTHLNMSHNLHINVLPQNLFDYNEGLLSVDISHVGLKAL 546

Query: 521 ---------NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT------------- 558
                    NL Y+ LS+N +  +  G+   L ++  LDLS+N + T             
Sbjct: 547 PVNLFSKTHNLEYIYLSHNLLQEVSEGTFKNLKNLTHLDLSYNNIVTIRTPAFVNVMSIQ 606

Query: 559 -----------FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFN 607
                      FKG++FNT      +SLE L++++N+L+YLFPSSF IH +L+ + LA N
Sbjct: 607 YLSLKGNQLNAFKGEFFNTG-----TSLEVLDVSDNQLSYLFPSSFKIHPRLREIILANN 661

Query: 608 KFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFN 667
           +FN+FP ELI  L YL+++DLS N LK +D+ D+  LP+LR + L  N ++++SE  F N
Sbjct: 662 QFNFFPAELISTLQYLEKVDLSGNVLKNVDELDFARLPKLRTILLARNELESVSEMAFHN 721

Query: 668 SSQLQIINLSFNRLEKLPERLFNTFLYTN-YDMAPNLVFQ 706
           S+Q+Q ++LS+NR+++L +RLF   +     ++A NL+++
Sbjct: 722 STQIQRLDLSYNRIDRLGDRLFEGLIRLELLNLAGNLLYE 761

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194746084|ref|XP_001955514.1| GF18811 [Drosophila ananassae] gi|190628551|gb|EDV44075.1| GF18811 [Drosophila ananassae]

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 275/741 (37%), Positives = 389/741 (52%), Gaps = 144/741 (19%)

Query: 91  SVSSEPCDTMIDDFPYPCRCKKM---SESQL---AMDCDNVAFPNGEYPTLPYGLNLVTF 144
           S++  PC  +      PCRC  +   +  QL   AMDCD V F +G+ P LPYG  +V +
Sbjct: 30  SLAWRPCPELSPALRLPCRCNVVPFAATGQLGAVAMDCDRVVF-HGDAPQLPYGAPIVAY 88

Query: 145 SQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDS 204
           +QR  G Q+LP Q F    + I  LD S N +RR+ DK F   +D+L ELRLA+NL GD+
Sbjct: 89  TQRHAGQQVLPSQTFGQLKLTIEELDLSNNLIRRIPDKAFDGLKDSLNELRLANNLLGDN 148

Query: 205 LNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNG 264
           LNPIFST+E H L NLRILDLS N+IK IEEG+LKGC +L E  +D N  T +P+ SLNG
Sbjct: 149 LNPIFSTAELHVLKNLRILDLSGNKIKQIEEGVLKGCMDLREFYIDRNSLTEVPTNSLNG 208

Query: 265 PRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
           P ALR LS+  N+IG L  DSF +QR LE I LR N + +I+  AF GL +I  + L  N
Sbjct: 209 PSALRHLSLRQNQIGALLRDSFSAQRQLEIIDLRHNIIRSIDSQAFKGLQRIREIKLAGN 268

Query: 325 RLNKLNSDTFQG-------------------GAFNGLAKIHILNLGYNRLNKLNSDTFQG 365
           R++ LNSD F+                     A   +  +  LNL  N L +L+    Q 
Sbjct: 269 RISHLNSDVFEQLQSLQKLDLSENFFNQFPMVALAAVPSLRHLNLSSNMLQQLDYSNMQV 328

Query: 366 THI---------TIFSF----FQDFQKLKSLDLNGNFLINLESTGLE--DTLDNLNVRDN 410
                       TI S     F++   LK LD++ N L  +E   LE  D+L  L +RDN
Sbjct: 329 VRALETLDISRNTITSITPGTFREMSSLKYLDISLNSLRTIEDDALEGLDSLQTLIIRDN 388

Query: 411 --------------QITTL-----SSSALNYKLL--------TKLDLSHNNLKELEPTAF 443
                         Q+T+L       +AL+ ++L        T L LS N ++EL P +F
Sbjct: 389 NILLVPGSALGRLPQLTSLHLDFNRVAALSAEILGSLQAGDITTLSLSRNVIRELPPGSF 448

Query: 444 TNVPTLLHLNLSRN----------AHLSSLPVG-----------GFDP--LKKLEVLDLA 480
               +L  L+LS N          A L S  +            G  P  L +L  LDL+
Sbjct: 449 QMFSSLHTLDLSGNSLAVINADTFAGLESTLMALKLSQNRLTGLGATPWVLPELRSLDLS 508

Query: 481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLD-------------- 526
              L  +P   F++L +L+ L L+ NHL  +   + K L  L  +D              
Sbjct: 509 GNSLTELPTNIFEDLESLQSLNLSGNHLNPLTGALLKPLDRLQVIDLSRCNVRQLSGDLF 568

Query: 527 ----------------------------------LSNNNIVNLRVGSLYGLPSMKRLDLS 552
                                             LSNN I ++R G+   +  +++L+L 
Sbjct: 569 AGLQDLKHIHLNDNQLQELQDGSFVNLWNISSIDLSNNRIASIRTGAFVNVMKLQKLNLR 628

Query: 553 FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYF 612
            N+L+ FKG+YFNT      + +EEL++++N+L+YLFPSSF IH +L+ ++ A NKF++F
Sbjct: 629 GNQLSAFKGEYFNTG-----TGIEELDISDNQLSYLFPSSFRIHPRLREIRAANNKFSFF 683

Query: 613 PKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQ 672
           P ELI  L YL+ +DLS+NQLKTI++ D+  LPRLR L + NN +D +SE  F NS+QLQ
Sbjct: 684 PAELITTLQYLEYVDLSHNQLKTIEELDFARLPRLRVLLVANNQLDMVSEMAFHNSTQLQ 743

Query: 673 IINLSFNRLEKLPERLFNTFL 693
           +++L++N L+++ ER F   +
Sbjct: 744 VLDLAYNNLDRVGERTFEGLI 764

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	719
FB|FBgn0261269	1092	conv "convoluted" [Drosophila	0.717	0.472	0.282	2.8e-38
FB|FBgn0036494	1514	Toll-6 "Toll-6" [Drosophila me	0.623	0.295	0.266	1.3e-26
RGD|68429	603	Igfals "insulin-like growth fa	0.589	0.703	0.286	6.2e-29
UNIPROTKB|F1LRE2	602	Igfals "Insulin-like growth fa	0.589	0.704	0.284	3.9e-28
MGI|MGI:107973	603	Igfals "insulin-like growth fa	0.579	0.691	0.292	5e-28
UNIPROTKB|F1NI07	604	IGFALS "Uncharacterized protei	0.506	0.602	0.304	8.5e-28
FB|FBgn0029114	1346	Tollo "Tollo" [Drosophila mela	0.559	0.298	0.262	1.6e-27
FB|FBgn0000313	1315	chp "chaoptic" [Drosophila mel	0.607	0.332	0.284	9.2e-27
FB|FBgn0004364	1389	18w "18 wheeler" [Drosophila m	0.492	0.254	0.279	1.5e-26
FB|FBgn0028888	1443	CG4168 [Drosophila melanogaste	0.730	0.363	0.262	1.5e-25

FB|FBgn0261269 conv "convoluted" [Drosophila melanogaster (taxid:7227)]

 Score = 431 (156.8 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
 Identities = 159/563 (28%), Positives = 258/563 (45%)

Query:   150 GH--QILPMQIFSSSDIP----IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGD 203
             GH  Q LP  +F+  +I     I R+  +GN L  L  + F P    L++L+  D L G+
Sbjct:   156 GHAFQQLPKDLFAGQEIANSLGIIRVT-NGN-LSDLPIETFQP----LRKLKTLD-LHGN 208

Query:   204 SLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLN 263
              L  +   ++F  L  L +LD+S NQIK +E   +     L    + HN  + +   +  
Sbjct:   209 QLENL-KRNQFKNLRELEVLDISHNQIKKLEAQHIADLTKLGWCNVSHNALSELSRGTFA 267

Query:   264 GPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGY 323
                 L++L +++N+I  L A+SF   R+L R+ L  N LT I  G F  +A+I  ++L  
Sbjct:   268 RNSVLKVLHLSHNQIARLDANSFRGMRFLRRLFLSDNVLTDIGRGTFGSIARIGTIDLAR 327

Query:   324 NRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSL 383
             NRL K+    FQ   F  +  + +L+L  N + K+  ++F+  +  I +   +  +L   
Sbjct:   328 NRLKKIE---FQ--MFTQMNYVELLDLAENNITKIEKNSFKDIYQAIINVSHNALELIET 382

Query:   384 DLNGNFLINLESTGLE-DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTA 442
                 N  +N+    L  + L N + R    TT +         T   LS+NNL  L    
Sbjct:   383 AAFEN-CVNITVLDLSHNRLANFSRRSFDETTFA---------TYFQLSYNNLTNLAQIP 432

Query:   443 FTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLC 502
               N+  L  LN S N+ ++ +P   F  L +L  +D++   + SI    F  L +L+ + 
Sbjct:   433 IQNMTGLKVLNASYNS-ITEIPKNCFPKLYELHTIDVSHNNISSIFNGVFQTLFSLRSID 491

Query:   503 LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT----- 557
             L+HN + EI    F  L  L  +DLS+N +V++  GSL  L S+++L L+ N+L      
Sbjct:   492 LSHNSMREIKSSTFGTLPTLLEMDLSHNELVSVVRGSLAKLTSLRQLYLNNNQLEKLFQL 551

Query:   558 --TFKGDYFNTKSKPNTSSXX---------XXXXXXXXXTYLFPSSFTIHSKLKTLKLAF 606
               +    YF+     N  S                      L   SFT    ++ LKL  
Sbjct:   552 PISLNELYFSHNRLTNIPSGTWPVMNSLIYLDLSHNQLGDTLNGESFTGLLVVQRLKLQN 611

Query:   607 NKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFF 666
             N  +  PK+ +  +S LQ + L NN + T++   +G LP L +       +  IS+  F 
Sbjct:   612 NGISQPPKDAVAVMSTLQYLHLENNNITTLERSAFGKLPVLFELNLYGNQVKDISKRAFE 671

Query:   667 NSSQLQIINLSFNRLEKLPERLF 689
                QL  +NLS N ++ L   +F
Sbjct:   672 GLLQLLTLNLSSNGIQTLQNDIF 694

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

FB|FBgn0036494 Toll-6 "Toll-6" [Drosophila melanogaster (taxid:7227)]

 Score = 336 (123.3 bits), Expect = 1.3e-26, P = 1.3e-26
 Identities = 131/491 (26%), Positives = 228/491 (46%)

Query:   208 IFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRA 267
             +   + F  L  LR+L +++N I  I +  L G  NL  L +  N+  ++P+  L   +A
Sbjct:   291 VLPANGFGTLRRLRVLSVNNNGISMIADKALSGLKNLQILNLSSNKIVALPT-ELFAEQA 349

Query:   268 LRILSMAY---NRIGTLKADSFLSQRWLERIILRGNRLTT--IEGGAFNGLAKIHILNLG 322
              +I+   Y   N I  L    F +   L+ + L  N++T+  I+   F GL ++ +LNL 
Sbjct:   350 -KIIQEVYLQNNSISVLNPQLFSNLDQLQALDLSMNQITSTWIDKNTFVGLIRLVLLNLS 408

Query:   323 YNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKS 382
             +N+L KL  + F     + L  + ILNL +N+L  + +DTF   +  + +      KLK 
Sbjct:   409 HNKLTKLEPEIF-----SDLYTLQILNLRHNQLENIAADTFAPMN-NLHTLLLSHNKLKY 462

Query:   383 LD---LNGNF---LINLESTGL----EDT------LDNLNVRDNQITTLSSSALNYKLLT 426
             LD   LNG +   L++L++  L     D       L +LN+  NQ+ T+  +  N + L 
Sbjct:   463 LDAYALNGLYVLSLLSLDNNALIGVHPDAFRNCSALQDLNLNGNQLKTVPLALRNMRHLR 522

Query:   427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKS 486
              +DL  N +  +E +AF  +  L  L L  N +L ++ +  F  L  L++L+LA   +  
Sbjct:   523 TVDLGENMITVMEDSAFKGLGNLYGLRLIGN-YLENITMHTFRDLPNLQILNLARNRIAV 581

Query:   487 IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS- 545
             +    F+   +++ + L  N L +I   +F N+ +L +L++S+N + +   G +   PS 
Sbjct:   582 VEPGAFEMTSSIQAVRLDGNELNDI-NGLFSNMPSLLWLNISDNRLESFDYGHV---PST 637

Query:   546 MKRLDLSFNKLTTFKGDY-FNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKL 604
             ++ LDL  N+L++    +  +++ K  T               + PSS  I + ++ L L
Sbjct:   638 LQWLDLHKNRLSSLSNRFGLDSELKLQTLDVSFNQLQR-----IGPSS--IPNSIELLFL 690

Query:   605 AFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETC 664
               N       +  +  + L  +DL  NQ+ T+D      LP           I     TC
Sbjct:   691 NDNLITTVDPDTFMHKTNLTRVDLYANQITTLDIKSLRILPVWEHRALPEFYIGGNPFTC 750

Query:   665 FFNSSQLQIIN 675
               N   LQ IN
Sbjct:   751 DCNIDWLQKIN 761

GO:0004888 "transmembrane signaling receptor activity" evidence=ISS;NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0006952 "defense response" evidence=NAS

GO:0007165 "signal transduction" evidence=IEA;ISS

RGD|68429 Igfals "insulin-like growth factor binding protein, acid labile subunit" [Rattus norvegicus (taxid:10116)]

 Score = 349 (127.9 bits), Expect = 6.2e-29, P = 6.2e-29
 Identities = 132/461 (28%), Positives = 208/461 (45%)

Query:   113 MSESQLAMDCDNVA-FPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDF 171
             +S   L +D +N++  P+  +  L   L+ +     W+   + P  +    ++    L+ 
Sbjct:    74 VSTRALWLDGNNLSSIPSAAFQNLS-SLDFLNLQGSWL-RSLEPQALLGLQNLYYLHLE- 130

Query:   172 SGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIK 231
               N LR L+  LF+ H  +L  L L+ NL G           F GL +L  L+L  N + 
Sbjct:   131 -RNRLRNLAVGLFT-HTPSLASLSLSSNLLGR-----LEEGLFQGLSHLWDLNLGWNSLV 183

Query:   232 AIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRW 291
              + + + +G  NL EL +  N+ T +      G   LR L ++ N + ++KA+ F+    
Sbjct:   184 VLPDTVFQGLGNLHELVLAGNKLTYLQPALFCGLGELRELDLSRNALRSVKANVFVHLPR 243

Query:   292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG 351
             L+++ L  N +T +  GAF G+  +  L+L +NR+  L  DTF G     L  +H+L L 
Sbjct:   244 LQKLYLDRNLITAVAPGAFLGMKALRWLDLSHNRVAGLMEDTFPG-----LLGLHVLRLA 298

Query:   352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL-EST--GLEDTLDNLNVR 408
             +N +  L   TF+  H            L+ L L  N +  L E T  GL   L+ L + 
Sbjct:   299 HNAIASLRPRTFKDLHF-----------LEELQLGHNRIRQLGERTFEGLGQ-LEVLTLN 346

Query:   409 DNQITTLSSSALNYKL-LTKLDLSHNNLKELEPTAFTNVPTL--LHLNLSRNAHLSSLPV 465
             DNQIT +   A +    +  ++LS N L+ L    F  +  L  LHL  S   H+     
Sbjct:   347 DNQITEVRVGAFSGLFNVAVMNLSGNCLRSLPERVFQGLDKLHSLHLEHSCLGHVRLHTF 406

Query:   466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525
              G   L++L + D     + SI +     L  L  L L  N LT +P  +F+ L +L YL
Sbjct:   407 AGLSGLRRLFLRD---NSISSIEEQSLAGLSELLELDLTTNRLTHLPRQLFQGLGHLEYL 463

Query:   526 DLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNT 566
              LS N +  L    L  L     LD+S N L T     F++
Sbjct:   464 LLSYNQLTTLSAEVLGPLQRAFWLDISHNHLETLAEGLFSS 504

GO:0005520 "insulin-like growth factor binding" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0007155 "cell adhesion" evidence=IEA

GO:0007165 "signal transduction" evidence=TAS

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0042567 "insulin-like growth factor ternary complex" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1LRE2 Igfals "Insulin-like growth factor-binding protein complex acid labile subunit" [Rattus norvegicus (taxid:10116)]

 Score = 342 (125.4 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 131/461 (28%), Positives = 206/461 (44%)

Query:   113 MSESQLAMDCDNVA-FPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDF 171
             +S   L +D +N++  P+  +  L   L+ +     W+   + P  +    ++    L  
Sbjct:    73 VSTRALWLDGNNLSSIPSAAFQNLS-SLDFLNLQGSWL-RSLEPQALLGLQNL--YHLHL 128

Query:   172 SGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIK 231
               N LR L+  LF+ H  +L  L L+ NL G           F GL +L  L+L  N + 
Sbjct:   129 ERNRLRNLAVGLFT-HTPSLASLSLSSNLLGR-----LEEGLFQGLSHLWDLNLGWNSLV 182

Query:   232 AIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRW 291
              + + + +G  NL EL +  N+ T +      G   LR L ++ N + ++KA+ F+    
Sbjct:   183 VLPDTVFQGLGNLHELVLAGNKLTYLQPALFCGLGELRELDLSRNALRSVKANVFVHLPR 242

Query:   292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG 351
             L+++ L  N +T +   AF G+  +  L+L +NR+  L  DTF G     L  +H+L L 
Sbjct:   243 LQKLYLDRNLITAVAPRAFLGMKALRWLDLSHNRVAGLMEDTFPG-----LLGLHVLRLA 297

Query:   352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL-EST--GLEDTLDNLNVR 408
             +N +  L   TF+  H            L+ L L  N +  L E T  GL   L+ L + 
Sbjct:   298 HNAIASLRPRTFKDLHF-----------LEELQLGHNRIRQLGERTFEGLGQ-LEVLTLN 345

Query:   409 DNQITTLSSSALNYKL-LTKLDLSHNNLKELEPTAFTNVPTL--LHLNLSRNAHLSSLPV 465
             DNQIT +   A +    +  ++LS N L+ L    F  +  L  LHL  S   H+     
Sbjct:   346 DNQITEVRVGAFSGLFNVAVMNLSGNCLRSLPERVFQGLDKLHSLHLEHSCLGHVRLHTF 405

Query:   466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525
              G   L++L + D     + SI +     L  L  L L  N LT +P  +F+ L +L YL
Sbjct:   406 AGLSGLRRLFLRD---NSISSIEEQSLAGLSELLELDLTTNRLTHLPRQLFQGLGHLEYL 462

Query:   526 DLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNT 566
              LS N +  L    L  L     LD+S N L T     F++
Sbjct:   463 LLSYNQLTTLSAEVLGPLQRAFWLDISHNHLETLAEGLFSS 503

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:107973 Igfals "insulin-like growth factor binding protein, acid labile subunit" [Mus musculus (taxid:10090)]

 Score = 341 (125.1 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 132/452 (29%), Positives = 203/452 (44%)

Query:   113 MSESQLAMDCDNVA-FPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDF 171
             +S   L +D +N++  P+  +  L   L+ +     W+   + P  +    ++    L  
Sbjct:    74 VSTRALWLDGNNLSSIPSAAFQNLS-SLDFLNLQGSWL-RSLEPQALLGLQNL--YHLHL 129

Query:   172 SGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIK 231
               N LR L+  LF  H  +L  L L +NL G           F GL +L  L+L  N + 
Sbjct:   130 ERNLLRSLAAGLFR-HTPSLASLSLGNNLLGR-----LEEGLFRGLSHLWDLNLGWNSLV 183

Query:   232 AIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRW 291
              + + + +G  NL EL +  N+ T +    L G   LR L ++ N + ++KA+ F+    
Sbjct:   184 VLPDTVFQGLGNLHELVLAGNKLTYLQPALLCGLGELRELDLSRNALRSVKANVFIHLPR 243

Query:   292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG 351
             L+++ L  N +T +   AF G+  +  L+L +NR+  L  DTF G     L  +H+L L 
Sbjct:   244 LQKLYLDRNLITAVAPRAFLGMKALRWLDLSHNRVAGLLEDTFPG-----LLGLHVLRLA 298

Query:   352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL-EST--GLEDTLDNLNVR 408
             +N +  L   TF+  H            L+ L L  N +  L E T  GL   L+ L + 
Sbjct:   299 HNAITSLRPRTFKDLHF-----------LEELQLGHNRIRQLGEKTFEGLGQ-LEVLTLN 346

Query:   409 DNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVG 466
             DNQI  +   A  + L  +  ++LS N L+ L    F  +  L  L+L  +  L  + + 
Sbjct:   347 DNQIHEVKVGAF-FGLFNVAVMNLSGNCLRSLPEHVFQGLGRLHSLHLEHSC-LGRIRLH 404

Query:   467 GFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLD 526
              F  L  L  L L    + SI +     L  L  L L  N LT +P  +F+ L  L YL 
Sbjct:   405 TFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTANQLTHLPRQLFQGLGQLEYLL 464

Query:   527 LSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
             LSNN +  L    L  L     LDLS N+L T
Sbjct:   465 LSNNQLTMLSEDVLGPLQRAFWLDLSHNRLET 496

GO:0005515 "protein binding" evidence=IPI

GO:0005520 "insulin-like growth factor binding" evidence=ISO

GO:0005576 "extracellular region" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0042567 "insulin-like growth factor ternary complex" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

UNIPROTKB|F1NI07 IGFALS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 339 (124.4 bits), Expect = 8.5e-28, P = 8.5e-28
 Identities = 118/388 (30%), Positives = 185/388 (47%)

Query:   169 LDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDN 228
             L+   N+L  L DK+F      L+EL LA    G+ L P      F  L  L+ LDLS N
Sbjct:   170 LNLGWNSLVVLPDKVFHD-LPNLRELILA----GNKL-PYLQHQLFCSLTELKELDLSGN 223

Query:   229 QIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLS 288
              +K I+  I      L +L +++N+  +I   +  G ++LR L +++NR+ +L  D+FL 
Sbjct:   224 ALKGIKINIFVKLQKLQKLYLNNNQINAIAPRAFMGMKSLRWLDLSHNRLTSLYEDTFLG 283

Query:   289 QRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHIL 348
                L  + L  N +T++    F  L  +  L LG+NR+  L   TF     +GL ++ +L
Sbjct:   284 LLSLHVLRLSTNSITSLRPRTFKDLQFLEELQLGHNRIWSLAERTF-----DGLGQLEVL 338

Query:   349 NLGYNRLNKLNSDTFQGTH-ITIFSFFQDFQK-LKSLDLNGNFLINLESTGLEDTLDNLN 406
             +L  N+L  + +  F G + + +     +  K L      G  +  L S  LE +  +  
Sbjct:   339 SLNNNQLQDIKAGAFLGLYNVAVMHLSANCIKTLPEYVFEG--VTKLHSLHLEHSCLS-K 395

Query:   407 VRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVG 466
             +R N  ++L+S       L +L L HN +  +E  +F  +  LL L+L  N  LS L   
Sbjct:   396 IRANTFSSLTS-------LRRLFLQHNAISTIEDQSFRELHELLELDLKHN-RLSHLSPQ 447

Query:   467 GFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLD 526
              F  L  LE L L+   +  I Q  F  L  L +L L+HN L  +   +   L NL YL 
Sbjct:   448 LFVGLSNLEYLFLSFNQIMDISQNTFSPLRRLFWLDLSHNQLATLDNAVITQLANLRYLS 507

Query:   527 LSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
             L NN++    VG L    ++++L L  N
Sbjct:   508 LRNNSLETFSVGFLCPSFTLEQLWLGGN 535

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0029114 Tollo "Tollo" [Drosophila melanogaster (taxid:7227)]

 Score = 316 (116.3 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
 Identities = 114/435 (26%), Positives = 201/435 (46%)

Query:   139 LNLVTFSQRWVGHQILPMQIFSSSDIPIR---RLDFSGNALRRLSDKLFSPHRDTLQELR 195
             L + T +  W     + +++ S+S +  R   RLD S N +  + D +  P + +LQ L 
Sbjct:   127 LTIRTHNGDW---STMSLEMASNSFVEFRQLERLDLSLNNIWLIPDGMVCPLK-SLQHLN 182

Query:   196 LADNLFGDSLNPIFSTS--EFHGLV---NLRILDLSDNQIKAIEEGILKGCDNLLELRMD 250
              + N   D  N  FS S       V    L+ LDLS N++ ++   +L     L  L M 
Sbjct:   183 ASYNKIQDISNFYFSASLSSRKARVCGSTLQSLDLSANKMVSLPTAMLSALGRLTHLNMA 242

Query:   251 HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF 310
              N  + +   +  G  +LR++ ++ NR+ +L  + F   + L+ I LR N +  +  G F
Sbjct:   243 KNSMSFLADRAFEGLLSLRVVDLSANRLTSLPPELFAETKQLQEIYLRNNSINVLAPGIF 302

Query:   311 NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITI 370
               LA++ +L+L  N   +LNS       F GL ++ +L+L  N++++L +      HI  
Sbjct:   303 GELAELLVLDLASN---ELNSQWINAATFVGLKRLMMLDLSANKISRLEA------HI-- 351

Query:   371 FSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLN---VRDNQITTLSSSALN-YKLLT 426
                F+    L+ L L  N++  L   G+   L NL+   +  N+I+ +    L   K L 
Sbjct:   352 ---FRPLASLQILKLEDNYIDQLPG-GIFADLTNLHTLILSRNRISVIEQRTLQGLKNLL 407

Query:   427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKS 486
              L L  N +  ++  +  N   L  L+L+ N  L ++P      ++ L+ LD+    +  
Sbjct:   408 VLSLDFNRISRMDQRSLVNCSQLQDLHLNDNK-LQAVPEA-LAHVQLLKTLDVGENMISQ 465

Query:   487 IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
             I      +L +L  L +  N LT I   +F  + +L  L+LS N + ++  GSL     +
Sbjct:   466 IENTSITQLESLYGLRMTENSLTHIRRGVFDRMSSLQILNLSQNKLKSIEAGSLQRNSQL 525

Query:   547 KRLDLSFNKLTTFKG 561
             + + L  N+L +  G
Sbjct:   526 QAIRLDGNQLKSIAG 540

GO:0005886 "plasma membrane" evidence=ISS

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0006952 "defense response" evidence=NAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0007352 "zygotic specification of dorsal/ventral axis" evidence=IEA

GO:0006963 "positive regulation of antibacterial peptide biosynthetic process" evidence=IEA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IEA

GO:0008063 "Toll signaling pathway" evidence=IEA

GO:0009620 "response to fungus" evidence=IEA

GO:0060049 "regulation of protein glycosylation" evidence=IMP

GO:0048935 "peripheral nervous system neuron development" evidence=IMP

GO:0002227 "innate immune response in mucosa" evidence=IMP

FB|FBgn0000313 chp "chaoptic" [Drosophila melanogaster (taxid:7227)]

 Score = 340 (124.7 bits), Expect = 9.2e-27, Sum P(2) = 9.2e-27
 Identities = 137/481 (28%), Positives = 229/481 (47%)

Query:   171 FSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQI 230
             +SG+AL   ++ L   H  +LQEL  ++N     ++ +  TS FH L NLR+L+L DN+I
Sbjct:   512 YSGSALP--AEPL--RHLTSLQELDFSNN----HISSMSDTS-FHFLKNLRLLELHDNRI 562

Query:   231 KAIEEGILKGC--DNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLS 288
             + + +G  +G     L E+ +  N  TSI   +     ALR L +  N+I  ++  +F++
Sbjct:   563 EQVLKGTFQGDIHSKLEEISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMN 622

Query:   289 QRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTF-QGGAFNGLAKIHI 347
                LE + LRGN++  +   +F  L K+ IL++ +N+L   N D F Q G  + L     
Sbjct:   623 LDELEYLSLRGNKINNLADESFQNLPKLEILDMAFNQLPNFNFDYFDQVGTLSNLN---- 678

Query:   348 LNLGYNRLNKL--NSD-TFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGL----ED 400
             +N+ +N++ +L  NS  + +  H  ++        +K LDL+ N  I++   G     E 
Sbjct:   679 VNVSHNQIRQLMYNSSWSGRNEHGGMYH-----SNIKILDLSHNN-ISIIHPGYFRPAEI 732

Query:   401 TLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAH 459
             +L +L++  N +   +     N   L  LDLS+N + EL+  AF N   L  +    N +
Sbjct:   733 SLTHLHLGYNSLMNTTRDVFGNMPHLQWLDLSYNWIHELDFDAFKNTKQLQLVFFGHN-Y 791

Query:   460 LSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNL 519
             LS +P   F P++ L ++D +   L+ +P   F     ++ L ++HN + +IP     +L
Sbjct:   792 LSDIPQDIFKPVQGLRIVDFSHNHLRGLPDNLFYNG-GMEKLDVSHNMMLKIPSSSLSSL 850

Query:   520 LNLTY--LDLSNNNIVNLRVGSLYG-LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXX 576
               LT   L LSNN I  +    L     S++ LD+S+N L       F T  K       
Sbjct:   851 AALTLCELHLSNNFISTIHSMDLSNKFRSLRYLDISYNYLLRIDDAVFATMPK-----LA 905

Query:   577 XXXXXXXXXTYLFPSSFT-IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKT 635
                        +   SF  + + L  L L     +  P+   + L YL+E  L  N+L +
Sbjct:   906 VLDLSHNRDLKVMDKSFMGLENSLIKLGLENISLSTVPE---IRLKYLREFRLGYNELPS 962

Query:   636 I 636
             I
Sbjct:   963 I 963

GO:0005886 "plasma membrane" evidence=NAS;IDA

GO:0007156 "homophilic cell adhesion" evidence=NAS;IDA

GO:0042051 "compound eye photoreceptor development" evidence=NAS

GO:0042052 "rhabdomere development" evidence=IGI

GO:0016028 "rhabdomere" evidence=IDA

FB|FBgn0004364 18w "18 wheeler" [Drosophila melanogaster (taxid:7227)]

 Score = 317 (116.6 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
 Identities = 107/383 (27%), Positives = 187/383 (48%)

Query:   190 TLQELRLADNL-FGDSLNPIFSTSEFHGLVN----LRILDLSDNQIKAIEEGILKGCDNL 244
             T   +R A+ L F + L    + S  +G V+    L+ LD+S N+++++ +    G   L
Sbjct:   177 TQNRIRSAEFLGFSEKLCAGSALSNANGAVSGGSELQTLDVSFNELRSLPDAW--GASRL 234

Query:   245 LELR---MDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNR 301
               L+   + HN  +++   +L G  +LR+L+++YN + +L +++F   + L  + L+GN 
Sbjct:   235 RRLQTLSLQHNNISTLAPNALAGLSSLRVLNISYNHLVSLPSEAFAGNKELRELHLQGND 294

Query:   302 LTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSD 361
             L  +  G  + L ++ +L+L  N+L   + D      F GL ++ +LNL  N L ++ S 
Sbjct:   295 LYELPKGLLHRLEQLLVLDLSGNQLTSHHVDN---STFAGLIRLIVLNLSNNALTRIGSK 351

Query:   362 TFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED--TLDNLNVRDNQITTLSSSA 419
             TF+  +            L+ LD+  N + ++E         L  LN+ +N++ TL +  
Sbjct:   352 TFKELYF-----------LQILDMRNNSIGHIEEGAFLPLYNLHTLNLAENRLHTLDNRI 400

Query:   420 LN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLD 478
              N   +LTKL L++N +  +E  AF N   L  L+LS N  L+ +P    D L  L+ LD
Sbjct:   401 FNGLYVLTKLTLNNNLVSIVESQAFRNCSDLKELDLSSN-QLTEVPEAVQD-LSMLKTLD 458

Query:   479 LAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVG 538
             L    +       F  L  L  L L  N +  I   MF++L  L+ L+L+ N I ++  G
Sbjct:   459 LGENQISEFKNNTFRNLNQLTGLRLIDNRIGNITVGMFQDLPRLSVLNLAKNRIQSIERG 518

Query:   539 SLYGLPSMKRLDLSFNKLTTFKG 561
             +      ++ + L  N LT   G
Sbjct:   519 AFDKNTEIEAIRLDKNFLTDING 541

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0004888 "transmembrane signaling receptor activity" evidence=ISS

GO:0007155 "cell adhesion" evidence=IDA

GO:0009653 "anatomical structure morphogenesis" evidence=IMP

GO:0006955 "immune response" evidence=IEP

GO:0005737 "cytoplasm" evidence=IDA

GO:0019731 "antibacterial humoral response" evidence=NAS;IMP;TAS

GO:0048598 "embryonic morphogenesis" evidence=TAS

GO:0006952 "defense response" evidence=TAS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=TAS

GO:0019730 "antimicrobial humoral response" evidence=IMP

FB|FBgn0028888 CG4168 [Drosophila melanogaster (taxid:7227)]

 Score = 326 (119.8 bits), Expect = 1.5e-25, P = 1.5e-25
 Identities = 147/559 (26%), Positives = 235/559 (42%)

Query:   140 NLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSP-HRDT-LQELRLA 197
             NL+  S +W   Q+ P+++       + RLD   N +  L    F   + D  L+ L L 
Sbjct:   433 NLIR-SVQWKELQVRPLRMH------LERLDLGQNCIENLESDYFQQNYSDVHLRALNLE 485

Query:   198 DNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLE-LRMDHNRFTS 256
              N        +F  +   G+ +L    L+ N I  +     +G    LE L ++ NR T+
Sbjct:   486 QNFVTQLPEAVFKAT---GIAHLV---LAFNAISRVHPSAFEGLTETLEYLDLERNRLTT 539

Query:   257 IPSVSLNGPRALRILSMAYNRIGTLK-ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAK 315
             +P V+L+    L+ L +  N+I  L    SF     L  + L GN  + I         +
Sbjct:   540 VP-VALSSLHHLKYLYLTSNQISQLNNLPSFTEN--LRVLSLSGNNFSMIPVLGLKNYTQ 596

Query:   316 IHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTH-ITIFSF- 373
             +  LN+GYN +  +    F   ++   + +  + L  N++  L+  +F G   I   S  
Sbjct:   597 LSYLNMGYNSITDIPEGIFAVDSWG--SNLQTILLRNNKITHLHLGSFAGLEQIQEISLS 654

Query:   374 FQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHN 433
             F D      L    N    L+   LE +      R  +      + L    L  L L +N
Sbjct:   655 FNDITIHHPLVFE-NVSRTLKI--LELSFAVFPARSLESLDPLDALLPLSQLIWLGLDNN 711

Query:   434 NLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGF--DPLKKLEVLDLAATGLKSIPQYQ 491
             NLK++   +F  +  L ++NLS N  L +LP G F  D    L  +DL+  GL+ +    
Sbjct:   712 NLKQVSNESFAQMRELSYINLSFN-QLKTLPRGLFQSDAHSHLVEIDLSYNGLERLEAQT 770

Query:   492 FDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDL 551
             F  L +L+ L L  N L  I    F NL  L YLDLS N +VN+  G+   LP++  LDL
Sbjct:   771 FHSLGDLQTLNLQSNRLRTIARHAFHNLEFLRYLDLSYNRLVNISHGAFTVLPNLAALDL 830

Query:   552 SFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNY 611
               N+L +     F   S   T              Y   SS+    +L        K + 
Sbjct:   831 MHNQLCSLSLKSFLYVSNTTTPLRLNVSHNHIASFYDELSSYMYIYQLDISHNHVTKSDS 890

Query:   612 FPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQL 671
             F   L   L +L   +L++NQL ++  + +G L  L         + ++    F   + L
Sbjct:   891 FTN-LANTLRFL---NLAHNQLGSLQSHAFGDLEFLEILNVAHNNLTSLRRRSFQGLNSL 946

Query:   672 QIINLSFNRLEKLPERLFN 690
             Q ++LS N+L++L    F+
Sbjct:   947 QELDLSHNQLDQLQVEQFS 965

GO:0004930 "G-protein coupled receptor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	719
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-11
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-09
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-06
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	8e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 72.6 bits (178), Expect = 4e-13
 Identities = 98/335 (29%), Positives = 146/335 (43%), Gaps = 17/335 (5%)

Query: 377 FQKLKSLDLNGNFLINL--ESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHN 433
           F  LK LDL GN L+     S     +L+ L +  NQ+       L   K L  + L +N
Sbjct: 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222

Query: 434 NLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK-SIPQYQF 492
           NL    P     + +L HL+L  N     +P      LK L+ L L    L   IP   F
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIF 281

Query: 493 DELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDL 551
             L  L  L L+ N L+ EIPE++ + L NL  L L +NN       +L  LP ++ L L
Sbjct: 282 S-LQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339

Query: 552 SFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN- 610
             NK +   G+      K N  +L  L+L+ N LT   P        L  L L  N    
Sbjct: 340 WSNKFS---GEIPKNLGKHN--NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394

Query: 611 YFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQ 670
             PK L    S L+ + L +N        ++  LP +  L+++NNN+     +  ++   
Sbjct: 395 EIPKSLGACRS-LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 671 LQIINLSFNR-LEKLPERLFNTFLYTNYDMAPNLV 704
           LQ+++L+ N+    LP+  F +    N D++ N  
Sbjct: 454 LQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQF 487

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 69.2 bits (169), Expect = 2e-12
 Identities = 80/270 (29%), Positives = 115/270 (42%), Gaps = 18/270 (6%)

Query: 353 NRLNKLNSDTFQGTHITIFSFF-QDFQKLKSLDLNGNFL--INLESTGLEDTLDNLNVRD 409
             L  L S       +        +   L SLDL+ N +  I      L+  L  L++ D
Sbjct: 90  LNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149

Query: 410 NQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFD 469
           N+I +L S   N   L  LDLS N+L +L P   +N+  L +L+LS N  +S LP     
Sbjct: 150 NKIESLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGN-KISDLPPEIEL 207

Query: 470 PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529
               LE LDL+   +  +       L NL  L L++N L ++PE    NL NL  LDLSN
Sbjct: 208 LS-ALEELDLSNNSIIELLS-SLSNLKNLSGLELSNNKLEDLPE-SIGNLSNLETLDLSN 264

Query: 530 NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNT-------KSKPNTSSLEELNLNN 582
           N I ++   SL  L +++ LDLS N L+                 +   T    EL LN+
Sbjct: 265 NQISSIS--SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNS 322

Query: 583 NELTYLFPS-SFTIHSKLKTLKLAFNKFNY 611
             L     S   T   +  ++  + N    
Sbjct: 323 ILLNNNILSNGETSSPEALSILESLNNLWT 352

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.4 bits (162), Expect = 3e-11
 Identities = 132/485 (27%), Positives = 202/485 (41%), Gaps = 49/485 (10%)

Query: 211 TSEFHGLVNLRILDLSDNQIKA-IEEGILKGCDNLLELRMDHNRFT-SIPSVSLNGPRAL 268
           +S    L  ++ ++LS+NQ+   I + I     +L  L + +N FT SIP  S+     L
Sbjct: 86  SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---L 142

Query: 269 RILSMAYNRI-GTLKAD--SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
             L ++ N + G +  D  SF S + L+   L GN L      +   L  +  L L  N+
Sbjct: 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLD---LGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199

Query: 326 LNKLNSDTFQGGAFNGLAKIHILN---LGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKS 382
           L         G     L ++  L    LGYN L+             I         L  
Sbjct: 200 LV--------GQIPRELGQMKSLKWIYLGYNNLSG-----------EIPYEIGGLTSLNH 240

Query: 383 LDLNGNFLINLESTGLED--TLDNLNVRDNQIT-TLSSSALNYKLLTKLDLSHNNLKELE 439
           LDL  N L     + L +   L  L +  N+++  +  S  + + L  LDLS N+L    
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK-SIPQYQFDELLNL 498
           P     +  L  L+L  N     +PV     L +L+VL L +      IP+    +  NL
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFSGEIPK-NLGKHNNL 358

Query: 499 KYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
             L L+ N+LT EIPE +  +  NL  L L +N++      SL    S++R+ L  N   
Sbjct: 359 TVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN--- 414

Query: 558 TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKF-NYFPKEL 616
           +F G+  +  +K        L+++NN L     S       L+ L LA NKF    P   
Sbjct: 415 SFSGELPSEFTKLPLVYF--LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472

Query: 617 ILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINL 676
             G   L+ +DLS NQ         G L  L +L L+ N +         +  +L  ++L
Sbjct: 473 --GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530

Query: 677 SFNRL 681
           S N+L
Sbjct: 531 SHNQL 535

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 57.6 bits (140), Expect = 7e-11
 Identities = 31/60 (51%), Positives = 40/60 (66%)

Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
           NLK L L++N LT IP+  FK L NL  LDLS NN+ ++   +  GLPS++ LDLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 64.2 bits (156), Expect = 8e-11
 Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 12/201 (5%)

Query: 493 DELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS 552
            EL NL  L L +N++T+IP ++     NL  LDLS+N I +L       LP++K LDLS
Sbjct: 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRN-LPNLKNLDLS 171

Query: 553 FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYF 612
           FN L+         K   N S+L  L+L+ N+++   P    + S L+ L L+ N     
Sbjct: 172 FNDLSDL------PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIEL 224

Query: 613 PKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQ 672
               +  L  L  ++LSNN+L+ + +   G L  L  L+L+NN I +IS     + + L+
Sbjct: 225 L-SSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNNQISSIS--SLGSLTNLR 280

Query: 673 IINLSFNRLEKLPERLFNTFL 693
            ++LS N L      +    L
Sbjct: 281 ELDLSGNSLSNALPLIALLLL 301

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.8 bits (150), Expect = 9e-10
 Identities = 102/390 (26%), Positives = 166/390 (42%), Gaps = 40/390 (10%)

Query: 213 EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFT-SIPSVSLNGPRALRIL 271
           E  GL +L  LDL  N +       L    NL  L +  N+ +  IP  S+   + L  L
Sbjct: 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISL 289

Query: 272 SMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNS 331
            ++ N +     +  +  + LE + L  N  T     A   L ++ +L L  N+      
Sbjct: 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK------ 343

Query: 332 DTFQGGAFNGLAK---IHILNLGYNRLNKLNSDTF----QGTHITIFSFFQDFQKLKSLD 384
             F G     L K   + +L+L  N L     +          + +FS   + +  KSL 
Sbjct: 344 --FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL- 400

Query: 385 LNGNFLINLESTGLEDTLDNLNVRDNQIT-TLSSSALNYKLLTKLDLSHNNLKELEPTAF 443
                       G   +L  + ++DN  +  L S      L+  LD+S+NNL+    +  
Sbjct: 401 ------------GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 444 TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCL 503
            ++P+L  L+L+RN     LP       K+LE LDL+          +   L  L  L L
Sbjct: 449 WDMPSLQMLSLARNKFFGGLP--DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL 506

Query: 504 AHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGD 562
           + N L+ EIP+ +  +   L  LDLS+N +      S   +P + +LDLS N+L+   G+
Sbjct: 507 SENKLSGEIPDEL-SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS---GE 562

Query: 563 YFNTKSKPNTSSLEELNLNNNELTYLFPSS 592
               K+  N  SL ++N+++N L    PS+
Sbjct: 563 I--PKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 27/60 (45%), Positives = 33/60 (55%)

Query: 473 KLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNI 532
            L+ LDL+   L  IP   F  L NLK L L+ N+LT I    F  L +L  LDLS NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 52.9 bits (128), Expect = 3e-09
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRL 681
           L+ +DLSNN+L  I D  +  LP L+ L+L+ NN+ +IS   F     L+ ++LS N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 52.2 bits (126), Expect = 7e-09
 Identities = 23/60 (38%), Positives = 35/60 (58%)

Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
           NL+ LDLS+N++  I +G  KG  NL  L +  N  TSI   + +G  +LR L ++ N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 57.4 bits (138), Expect = 2e-08
 Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 36/231 (15%)

Query: 472 KKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNN 531
           +++  L L    LKS+P+   +   N+K L    N LT IP  +   +     ++LS N 
Sbjct: 199 EQITTLILDNNELKSLPE---NLQGNIKTLYANSNQLTSIPATLPDTI---QEMELSINR 252

Query: 532 IVNLRVGSLYGLPS-MKRLDLSFNKLTTFKGD----------YFNT-KSKPN--TSSLEE 577
           I  L       LPS ++ LDL  NK++    +          Y N+ ++ P    S +  
Sbjct: 253 ITELP----ERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITH 308

Query: 578 LNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTID 637
           LN+ +N LT L P   T+   LKTL+   N     P  L      LQ +D+S NQ+  + 
Sbjct: 309 LNVQSNSLTAL-PE--TLPPGLKTLEAGENALTSLPASLP---PELQVLDVSKNQITVLP 362

Query: 638 DYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERL 688
           +      P +  L+++ N +  + E      + LQI+  S N L +LPE L
Sbjct: 363 E---TLPPTITTLDVSRNALTNLPENL---PAALQIMQASRNNLVRLPESL 407

Length = 754

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.8 bits (137), Expect = 3e-08
 Identities = 98/360 (27%), Positives = 160/360 (44%), Gaps = 44/360 (12%)

Query: 311 NGLAKIHILNL-GYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN-KLNSDTFQGTHI 368
           N  +++  ++L G N   K++S  F+      L  I  +NL  N+L+  +  D F  +  
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFR------LPYIQTINLSNNQLSGPIPDDIFTTSS- 118

Query: 369 TIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQIT-TLSSSALNYKLLTK 427
                      L+ L+L+ N        G    L+ L++ +N ++  + +   ++  L  
Sbjct: 119 ----------SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168

Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
           LDL  N L    P + TN+ +L  L L+ N  +  +P      +K L+ + L    L   
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGE 227

Query: 488 PQYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
             Y+   L +L +L L +N+LT  IP     NL NL YL L  N +      S++ L  +
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286

Query: 547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAF 606
             LDLS N L+   G+      +    +LE L+L +N  T   P + T   +L+ L+L  
Sbjct: 287 ISLDLSDNSLS---GEIPELVIQ--LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 607 NKFN-YFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP-------RLRKLNLNNNNID 658
           NKF+   PK L    + L  +DLS N L        G +P        L KL L +N+++
Sbjct: 342 NKFSGEIPKNL-GKHNNLTVLDLSTNNLT-------GEIPEGLCSSGNLFKLILFSNSLE 393

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.7 bits (117), Expect = 1e-07
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 5/65 (7%)

Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNL 580
           NL  LDLSNN +  +  G+  GLP++K LDLS N LT+   + F+        SL  L+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS-----GLPSLRSLDL 55

Query: 581 NNNEL 585
           + N L
Sbjct: 56  SGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
           L  LDLS+N L  +   AF  +P L  L+LS N +L+S+    F  L  L  LDL+   L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 598 KLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNI 657
            LK+L L+ N+    P     GL  L+ +DLS N L +I    +  LP LR L+L+ NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG 351
           L+ + L  NRLT I  GAF GL  + +L+L  N L  ++ + F      GL  +  L+L 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS-----GLPSLRSLDLS 56

Query: 352 YNRL 355
            N L
Sbjct: 57  GNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 402 LDNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
           L +L++ +N++T +   A      L  LDLS NNL  + P AF+ +P+L  L+LS N
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 574 SLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL 633
           +L+ L+L+NN LT +   +F     LK L L+ N       E   GL  L+ +DLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 58/283 (20%), Positives = 89/283 (31%), Gaps = 66/283 (23%)

Query: 468 FDPLKKLEVLDLAATGLKSIPQYQFDELL----NLKYLCLAHNHLTEIPE------MMFK 517
              L  L+VL L    L           L    +LK LCL+ N    IP           
Sbjct: 19  LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78

Query: 518 NLLNLTYLDLSNNNIVNLRVGSLYGL--------------------------------PS 545
               L  LDLS+N +     G L  L                                P+
Sbjct: 79  KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138

Query: 546 MKRLDLSFNKLTTFKGDYFNT-KSKPNTSSLEELNLNNNEL-----TYLFPSSFTIHSKL 599
           +++L L  N+L           K+      L+ELNL NN +       L       +  L
Sbjct: 139 LEKLVLGRNRLEG--ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNL 195

Query: 600 KTLKLAFNKFNY----FPKELILGLSYLQEIDLSNNQLK-----TIDDYDYGYLPRLRKL 650
           + L L  N           E +  L  L+ ++L +N L       +          L  L
Sbjct: 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255

Query: 651 NLNNNNIDA-----ISETCFFNSSQLQIINLSFNRLEKLPERL 688
           +L+ N+I       ++E        L  ++L  N+  +   +L
Sbjct: 256 SLSCNDITDDGAKDLAEVL-AEKESLLELDLRGNKFGEEGAQL 297

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 268 LRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
           L+ L ++ NR+  +   +F     L+ + L GN LT+I   AF+GL  +  L+L  N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 9e-06
 Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 23/228 (10%)

Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
              L+ L  LDL+ N+++      L    NL  L +D+N  T IP +       L+ L +
Sbjct: 89  LLNLLPLPSLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDL 147

Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDT 333
           + N+I +L +        L+ + L  N L+ +     N L+ ++ L+L  N+++ L  + 
Sbjct: 148 SDNKIESLPSPLRNLP-NLKNLDLSFNDLSDLPKLLSN-LSNLNNLDLSGNKISDLPPEI 205

Query: 334 FQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL 393
                   L+ +  L+L  N + +L             S   + + L  L+L+ N L +L
Sbjct: 206 ------ELLSALEELDLSNNSIIELL------------SSLSNLKNLSGLELSNNKLEDL 247

Query: 394 EST-GLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEP 440
             + G    L+ L++ +NQI+++SS   +   L +LDLS N+L    P
Sbjct: 248 PESIGNLSNLETLDLSNNQISSISSLG-SLTNLRELDLSGNSLSNALP 294

Length = 394

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 48.6 bits (115), Expect = 1e-05
 Identities = 84/297 (28%), Positives = 127/297 (42%), Gaps = 73/297 (24%)

Query: 378 QKLKSLDLNGNFLINLESTGLEDTLD-------NLNVRDNQITTLSSSALNYKLLTKLDL 430
           QK+++   NGN ++N+  +GL    D        L + DN +T+L   AL  +L T L++
Sbjct: 193 QKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSL--PALPPELRT-LEV 249

Query: 431 SHNNLKELEPTAFTNVPTLLHLNLSRN--AHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
           S N L  L        P LL L++  N   HL +LP G    L KL +     T L  +P
Sbjct: 250 SGNQLTSLPVLP----PGLLELSIFSNPLTHLPALPSG----LCKLWIFGNQLTSLPVLP 301

Query: 489 QYQFDELLNLKYLCLAHNHLTEIPEM--------MFKNLLN--------LTYLDLSNNNI 532
                    L+ L ++ N L  +P +         + N L         L  L +S+N +
Sbjct: 302 P-------GLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQL 354

Query: 533 VNL---------------RVGSLYGLPS-MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLE 576
            +L               R+ SL  LPS +K L +S N+LT+              S L+
Sbjct: 355 ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSL---------PVLPSELK 405

Query: 577 ELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL 633
           EL ++ N LT L P    + S L +L +  N+    P+ LI  LS    ++L  N L
Sbjct: 406 ELMVSGNRLTSL-P---MLPSGLLSLSVYRNQLTRLPESLI-HLSSETTVNLEGNPL 457

Length = 788

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 646 RLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
            L+ L+L+NN +  I +  F     L++++LS N L  +    F
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAF 44

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 567 KSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEI 626
           ++  N   L  L+LN N L           + L +L L  N     P  + L  S L+E+
Sbjct: 87  ENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLKEL 145

Query: 627 DLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686
           DLS+N+++++       LP L+ L+L+ N++  +      N S L  ++LS N++  LP 
Sbjct: 146 DLSDNKIESLPS-PLRNLPNLKNLDLSFNDLSDLP-KLLSNLSNLNNLDLSGNKISDLPP 203

Query: 687 RL 688
            +
Sbjct: 204 EI 205

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 40.2 bits (95), Expect = 8e-05
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRV 537
           NL+ L L++N +T++P     NL NL  LDLS N I +L  
Sbjct: 2   NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 24/195 (12%)

Query: 290 RWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN-KLNSDTFQGGAFNGLAKIHIL 348
           R L R+ L+ N  +      F  L  ++ L++  N L  ++NS  +       +  + +L
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD------MPSLQML 457

Query: 349 NLGYNRLNKLNSDTFQGTHI------------TIFSFFQDFQKLKSLDLNGNFL---INL 393
           +L  N+      D+F    +             +        +L  L L+ N L   I  
Sbjct: 458 SLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517

Query: 394 ESTGLEDTLDNLNVRDNQIT-TLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHL 452
           E +  +  L +L++  NQ++  + +S     +L++LDLS N L    P    NV +L+ +
Sbjct: 518 ELSSCKK-LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576

Query: 453 NLSRNAHLSSLPVGG 467
           N+S N    SLP  G
Sbjct: 577 NISHNHLHGSLPSTG 591

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMD 250
           L+ L L++N              F GL NL++LDLS N + +I      G  +L  L + 
Sbjct: 2   LKSLDLSNNRLTV-----IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLS 56

Query: 251 HNRF 254
            N  
Sbjct: 57  GNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 57/243 (23%), Positives = 76/243 (31%), Gaps = 52/243 (21%)

Query: 372 SFFQDFQKLKSLDLNGNFLINLESTGLED-----TLDNLNVRDN----QITTLSSSAL-- 420
                   L+ LDL+ N L       LE      +L  L + +N    +   L +  L  
Sbjct: 75  QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKD 134

Query: 421 NYKLLTKLDLSHNNLKE--LEPTA--FTNVPTLLHLNLSRN-------AHLSSLPVGGFD 469
               L KL L  N L+    E  A        L  LNL+ N         L      G  
Sbjct: 135 LPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL----AEGLK 190

Query: 470 PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529
               LEVLDL   GL                L                +L +L  L+L +
Sbjct: 191 ANCNLEVLDLNNNGLTDE---------GASALA-----------ETLASLKSLEVLNLGD 230

Query: 530 NNIVN-----LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNE 584
           NN+ +     L    L    S+  L LS N +T                SL EL+L  N+
Sbjct: 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE-VLAEKESLLELDLRGNK 289

Query: 585 LTY 587
              
Sbjct: 290 FGE 292

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 37/216 (17%)

Query: 425 LTKLDLSHN-NLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA-T 482
           LT+L LS   +L EL P++  N+  L HL +    +L +LP G    L+ LE LDL+  +
Sbjct: 780 LTRLFLSDIPSLVEL-PSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSGCS 836

Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
            L++ P    D   N+  L L+   + E+P    +   NL++LD++             G
Sbjct: 837 RLRTFP----DISTNISDLNLSRTGIEEVP-WWIEKFSNLSFLDMN-------------G 878

Query: 543 LPSMKRLDLSFNKLTTFKGDYFN-----TKSKPNTSSLEELNLNNNELTYLFPSSFTIHS 597
             +++R+ L+ +KL   +   F+     T++  N S  E     +N  + L PS+  I+ 
Sbjct: 879 CNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKL-PSTVCIN- 936

Query: 598 KLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL 633
                    N FN   + L+   S  +++ LS  ++
Sbjct: 937 -------FINCFNLDQEALLQQQSIFKQLILSGEEV 965

syringae 6; Provisional. Length = 1153

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 52/233 (22%), Positives = 81/233 (34%), Gaps = 37/233 (15%)

Query: 166 IRRLDFSGNALRRLSDKLFSP--HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRIL 223
           ++ LD S NAL      +        +LQEL+L +N  GD    + +         L  L
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142

Query: 224 DLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG---- 279
            L  N+++         C+ L +               L   R L+ L++A N IG    
Sbjct: 143 VLGRNRLEG------ASCEALAKA--------------LRANRDLKELNLANNGIGDAGI 182

Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNG----LAKIHILNLGYNRLNKLNSDTFQ 335
              A+   +   LE + L  N LT     A       L  + +LNLG N L    +    
Sbjct: 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242

Query: 336 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN 388
               +    +  L+L  N +    +               + + L  LDL GN
Sbjct: 243 SALLSPNISLLTLSLSCNDITDDGAKDLAE-------VLAEKESLLELDLRGN 288

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 41/165 (24%), Positives = 62/165 (37%), Gaps = 35/165 (21%)

Query: 165 PIRRLDFSGNAL-----RRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGL-- 217
            + +L    N L       L+  L       L+EL LA+N  GD+       +   GL  
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKAL--RANRDLKELNLANNGIGDAGIR----ALAEGLKA 191

Query: 218 -VNLRILDLSDNQI-----KAIEEGILKGCDNLLELRMDHNRFTSIP-----SVSLNGPR 266
             NL +LDL++N +      A+ E +     +L  L +  N  T        S  L+   
Sbjct: 192 NCNLEVLDLNNNGLTDEGASALAETLASLK-SLEVLNLGDNNLTDAGAAALASALLSPNI 250

Query: 267 ALRILSMAYNRIGTLKA-------DSFLSQRWLERIILRGNRLTT 304
           +L  LS++ N I    A           S   L+   LRGN+   
Sbjct: 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD---LRGNKFGE 292

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKG 561
           NL  LDLSNN I +L    L  LP+++ LDLS NK+T    
Sbjct: 2   NLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 16/74 (21%)

Query: 315 KIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFF 374
            +  L+L  NRL  +       GAF GL  + +L+L  N L  ++ + F G         
Sbjct: 1   NLKSLDLSNNRLTVIPD-----GAFKGLPNLKVLDLSGNNLTSISPEAFSGLP------- 48

Query: 375 QDFQKLKSLDLNGN 388
                L+SLDL+GN
Sbjct: 49  ----SLRSLDLSGN 58

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.9 bits (84), Expect = 0.003
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS 261
           NL  LDLS+NQI  +    L    NL  L +  N+ T +  +S
Sbjct: 2   NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSPLS 42

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	719
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194|consensus	873		100.0
KOG4194|consensus	873		100.0
KOG0472|consensus	565		100.0
KOG0472|consensus	565		100.0
KOG0618|consensus	1081		100.0
KOG0618|consensus	1081		100.0
KOG4237|consensus	498		99.97
KOG0444|consensus	1255		99.96
KOG0444|consensus	1255		99.95
KOG4237|consensus	498		99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
KOG0617|consensus	264		99.49
KOG0617|consensus	264		99.48
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.24
KOG1909|consensus	382		99.24
KOG1909|consensus	382		99.19
KOG3207|consensus	505		99.18
KOG0532|consensus	722		99.15
KOG3207|consensus	505		99.14
KOG1259|consensus	490		99.13
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
KOG1259|consensus	490		99.08
KOG0531|consensus	414		99.07
KOG0532|consensus	722		99.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
KOG0531|consensus	414		99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.9
PLN03150	623	hypothetical protein; Provisional	98.82
KOG4658|consensus	889		98.81
PLN03150	623	hypothetical protein; Provisional	98.73
KOG1859|consensus	1096		98.73
KOG4658|consensus	889		98.67
KOG1859|consensus	1096		98.55
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.44
KOG4579|consensus	177		98.4
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.39
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.33
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.28
KOG2982|consensus	418		98.21
KOG1644|consensus	233		98.19
KOG4579|consensus	177		98.19
KOG1644|consensus	233		98.18
KOG2982|consensus	418		98.16
KOG2120|consensus	419		98.15
KOG2120|consensus	419		98.15
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
PRK15386	426	type III secretion protein GogB; Provisional	97.82
PRK15386	426	type III secretion protein GogB; Provisional	97.81
KOG4341|consensus	483		97.79
KOG4341|consensus	483		97.6
KOG2123|consensus	388		97.37
KOG3665|consensus	699		97.35
KOG3665|consensus	699		97.23
KOG2123|consensus	388		96.97
KOG2739|consensus	260		96.82
KOG2739|consensus	260		96.73
KOG1947|consensus	482		96.17
KOG1947|consensus	482		95.95
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.68
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.07
smart00370	26	LRR Leucine-rich repeats, outliers.	95.07
KOG4308|consensus	478		95.03
KOG4308|consensus	478		94.97
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.49
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.4
cd01775	97	CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase	93.91
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.85
smart00370	26	LRR Leucine-rich repeats, outliers.	92.58
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.58
KOG3864|consensus	221		90.73
KOG3864|consensus	221		88.33
KOG0473|consensus	326		86.4
KOG0473|consensus	326		86.27
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	81.28
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	80.9

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.8e-51  Score=494.17  Aligned_cols=526  Identities=25%  Similarity=0.254  Sum_probs=376.2

Q ss_pred             hcccccCCcCccccccCCCCcccEEEcCCCCcc-ccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEE
Q psy16110        145 SQRWVGHQILPMQIFSSSDIPIRRLDFSGNALR-RLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRIL  223 (719)
Q Consensus       145 ~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L  223 (719)
                      .+...++.......|... ++|+.|+|++|++. .+|..+|. .+++|++|+|++|.+.+.+|.       +.+++|++|
T Consensus        75 ~L~~~~i~~~~~~~~~~l-~~L~~L~Ls~n~~~~~ip~~~~~-~l~~L~~L~Ls~n~l~~~~p~-------~~l~~L~~L  145 (968)
T PLN00113         75 DLSGKNISGKISSAIFRL-PYIQTINLSNNQLSGPIPDDIFT-TSSSLRYLNLSNNNFTGSIPR-------GSIPNLETL  145 (968)
T ss_pred             EecCCCccccCChHHhCC-CCCCEEECCCCccCCcCChHHhc-cCCCCCEEECcCCccccccCc-------cccCCCCEE
Confidence            333334433333344433 46888888888876 67777663 567888888888887765542       357778888


Q ss_pred             ECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCc
Q psy16110        224 DLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT  303 (719)
Q Consensus       224 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~  303 (719)
                      +|++|.+....+..++++++|++|++++|.+....+..++++++|++|++++|.+....|..+..+++|++|++++|.+.
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence            88888877665666777888888888888776443346778888888888888877777777778888888888888887


Q ss_pred             ccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEE
Q psy16110        304 TIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSL  383 (719)
Q Consensus       304 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L  383 (719)
                      +..+..++++++|++|++++|.+++..+.     .+..+++|++|++++|+++           +.+|..+..+++|++|
T Consensus       226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-----~l~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~~L  289 (968)
T PLN00113        226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPS-----SLGNLKNLQYLFLYQNKLS-----------GPIPPSIFSLQKLISL  289 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCceeccccCh-----hHhCCCCCCEEECcCCeee-----------ccCchhHhhccCcCEE
Confidence            77777788888888888888877654433     4566778888888887763           2345556667788888


Q ss_pred             ECCCCCCcCcCC--cchhccCCEEEccCCcccccccC-ccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCC
Q psy16110        384 DLNGNFLINLES--TGLEDTLDNLNVRDNQITTLSSS-ALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHL  460 (719)
Q Consensus       384 ~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l  460 (719)
                      ++++|.+....+  +..+++|+.|++++|.+.+..+. ...+++|+.|++++|.+.+..+..++.+++|+.|++++|...
T Consensus       290 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~  369 (968)
T PLN00113        290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT  369 (968)
T ss_pred             ECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence            888887764433  34556788888888877654433 334777888888888887766777777788888888887433


Q ss_pred             CCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCcc
Q psy16110        461 SSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL  540 (719)
Q Consensus       461 ~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l  540 (719)
                      +.+|. .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++...+..|..+++|+.|++++|.+++..+..+
T Consensus       370 ~~~p~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~  448 (968)
T PLN00113        370 GEIPE-GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK  448 (968)
T ss_pred             eeCCh-hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh
Confidence            44443 35567778888888887777666677778888888888887775555567778888888888888877777777


Q ss_pred             CCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCC
Q psy16110        541 YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGL  620 (719)
Q Consensus       541 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  620 (719)
                      ..+++|+.|++++|++.+..+..+.      .++|+.|++++|++++..|..+..+++|++|++++|++.+..+..+.++
T Consensus       449 ~~l~~L~~L~L~~n~~~~~~p~~~~------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  522 (968)
T PLN00113        449 WDMPSLQMLSLARNKFFGGLPDSFG------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC  522 (968)
T ss_pred             ccCCCCcEEECcCceeeeecCcccc------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence            7778888888888877654444332      3678888888888887777777788888888888888876666667778


Q ss_pred             CCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCC-CcChHhhcCcccc-EEe
Q psy16110        621 SYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE-KLPERLFNTFLYT-NYD  698 (719)
Q Consensus       621 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L-~L~  698 (719)
                      ++|++|+|++|.+++..+..+..+++|+.|++++|++++..|..+..+++|++|++++|+++ .+|..  ..+..+ ...
T Consensus       523 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~--~~~~~~~~~~  600 (968)
T PLN00113        523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST--GAFLAINASA  600 (968)
T ss_pred             cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc--chhcccChhh
Confidence            88888888888888777777778888888888888888777777777788888888888776 45542  222334 445


Q ss_pred             cCCCce
Q psy16110        699 MAPNLV  704 (719)
Q Consensus       699 l~~N~l  704 (719)
                      +.+|+.
T Consensus       601 ~~~n~~  606 (968)
T PLN00113        601 VAGNID  606 (968)
T ss_pred             hcCCcc
Confidence            566664

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.9e-51  Score=493.98  Aligned_cols=512  Identities=23%  Similarity=0.232  Sum_probs=446.9

Q ss_pred             cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110        165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL  244 (719)
Q Consensus       165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  244 (719)
                      +++.|||++|.++......|. .+++|++|+|++|.+.+.+|.    ..+.++++|++|+|++|++....+.  ..+++|
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~-~l~~L~~L~Ls~n~~~~~ip~----~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L  142 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIF-RLPYIQTINLSNNQLSGPIPD----DIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL  142 (968)
T ss_pred             cEEEEEecCCCccccCChHHh-CCCCCCEEECCCCccCCcCCh----HHhccCCCCCEEECcCCccccccCc--cccCCC
Confidence            599999999999866666664 679999999999999887664    4566899999999999999865442  568999


Q ss_pred             cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCC
Q psy16110        245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN  324 (719)
Q Consensus       245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  324 (719)
                      ++|++++|.++...+..++++++|++|++++|.+....|..+.++++|++|++++|.+.+..|..++++++|++|++++|
T Consensus       143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  222 (968)
T PLN00113        143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN  222 (968)
T ss_pred             CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence            99999999998544447999999999999999998888888999999999999999999988999999999999999999


Q ss_pred             CCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCC--cchhccC
Q psy16110        325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES--TGLEDTL  402 (719)
Q Consensus       325 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~--~~~~~~L  402 (719)
                      .++...+.     .+..+++|++|++++|.++           +.+|..+..+++|++|++++|.+.+..+  +..+++|
T Consensus       223 ~l~~~~p~-----~l~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  286 (968)
T PLN00113        223 NLSGEIPY-----EIGGLTSLNHLDLVYNNLT-----------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL  286 (968)
T ss_pred             ccCCcCCh-----hHhcCCCCCEEECcCceec-----------cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence            99865444     4678999999999999874           3456678889999999999999875433  5566899


Q ss_pred             CEEEccCCcccccccC-ccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCC
Q psy16110        403 DNLNVRDNQITTLSSS-ALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA  481 (719)
Q Consensus       403 ~~L~l~~n~l~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~  481 (719)
                      ++|++++|.+.+..+. ...+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|. .+..+++|+.|++++
T Consensus       287 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~Ls~  365 (968)
T PLN00113        287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLST  365 (968)
T ss_pred             CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh-HHhCCCCCcEEECCC
Confidence            9999999998865443 44589999999999999998888899999999999999954455654 477889999999999


Q ss_pred             CCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccC
Q psy16110        482 TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKG  561 (719)
Q Consensus       482 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  561 (719)
                      |++.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+
T Consensus       366 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~  445 (968)
T PLN00113        366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN  445 (968)
T ss_pred             CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC
Confidence            99988777788889999999999999987767778999999999999999999889999999999999999999987655


Q ss_pred             CcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccC
Q psy16110        562 DYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDY  641 (719)
Q Consensus       562 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  641 (719)
                      ..+.     .+++|++|++++|.+.+..|..+ ..++|++|++++|++++..+..+.++++|+.|++++|++.+..+..+
T Consensus       446 ~~~~-----~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  519 (968)
T PLN00113        446 SRKW-----DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL  519 (968)
T ss_pred             hhhc-----cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHH
Confidence            4433     35899999999999998888765 46899999999999998777778999999999999999998888889


Q ss_pred             CCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceee
Q psy16110        642 GYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQ  706 (719)
Q Consensus       642 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~  706 (719)
                      .++++|++|+|++|++++..|..|..+++|+.|||++|+++...+..+.+++.| .+++++|++..
T Consensus       520 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            999999999999999999999899999999999999999985444567889999 99999999965

>KOG4194|consensus

Probab=100.00  E-value=5.7e-44  Score=364.21  Aligned_cols=395  Identities=27%  Similarity=0.444  Sum_probs=315.7

Q ss_pred             cEEEcCCCcCcccCCCcccCC--CccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCC
Q psy16110        269 RILSMAYNRIGTLKADSFLSQ--RWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIH  346 (719)
Q Consensus       269 ~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~  346 (719)
                      ..||.+++.+..+....+.+.  +.-+.|++++|++..+....|.++++|+++++.+|.++.+|.-      -....+|+
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f------~~~sghl~  128 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF------GHESGHLE  128 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc------ccccccee
Confidence            344555555544433222222  2234577777777777777777777777777777777777651      12234477


Q ss_pred             EEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccC-CCCc
Q psy16110        347 ILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALN-YKLL  425 (719)
Q Consensus       347 ~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L  425 (719)
                      .|+|.+|.|+++....           ++.++.|++|||+.|.++.++.                      ..+. -.++
T Consensus       129 ~L~L~~N~I~sv~se~-----------L~~l~alrslDLSrN~is~i~~----------------------~sfp~~~ni  175 (873)
T KOG4194|consen  129 KLDLRHNLISSVTSEE-----------LSALPALRSLDLSRNLISEIPK----------------------PSFPAKVNI  175 (873)
T ss_pred             EEeeeccccccccHHH-----------HHhHhhhhhhhhhhchhhcccC----------------------CCCCCCCCc
Confidence            7777777766655432           2234455555555555554443                      2222 3567


Q ss_pred             cEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccC
Q psy16110        426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAH  505 (719)
Q Consensus       426 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~  505 (719)
                      ++|+|++|.|+.+....|..+.+|..|.|+.| .++.+|...|..+++|+.|++..|.|..+....|.++++|+.|.+..
T Consensus       176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqr  254 (873)
T KOG4194|consen  176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR  254 (873)
T ss_pred             eEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhh
Confidence            88888888888888888888888888888888 88888888888888999999999988888777889999999999999


Q ss_pred             CcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCC
Q psy16110        506 NHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNEL  585 (719)
Q Consensus       506 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  585 (719)
                      |.+..+..++|..+.++++|+|+.|++..+..+++.++++|+.|++++|.+..+..+.+.     .+++|++|+||+|++
T Consensus       255 N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-----ftqkL~~LdLs~N~i  329 (873)
T KOG4194|consen  255 NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-----FTQKLKELDLSSNRI  329 (873)
T ss_pred             cCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh-----hcccceeEecccccc
Confidence            999999999999999999999999999999889999999999999999999888776654     358999999999999


Q ss_pred             CCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccC---cccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110        586 TYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTID---DYDYGYLPRLRKLNLNNNNIDAISE  662 (719)
Q Consensus       586 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~l~~L~~L~Ls~N~l~~~~~  662 (719)
                      +...+.+|..+..|++|+|++|.++.+...+|..+++|++|||++|.++...   ...|.++++|+.|++.+|++..++.
T Consensus       330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k  409 (873)
T KOG4194|consen  330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK  409 (873)
T ss_pred             ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch
Confidence            9999999999999999999999999999999999999999999999998543   3458889999999999999999999


Q ss_pred             ccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCCccccC
Q psy16110        663 TCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHRCECA  717 (719)
Q Consensus       663 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~  717 (719)
                      .+|..++.|++|||.+|.|.+|.++.|..+ .| +|.+..-.+        -|+|.
T Consensus       410 rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf--------lCDCq  456 (873)
T KOG4194|consen  410 RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF--------LCDCQ  456 (873)
T ss_pred             hhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce--------EEecc
Confidence            999999999999999999999999999998 89 888887777        79996

>KOG4194|consensus

Probab=100.00  E-value=1.2e-43  Score=361.73  Aligned_cols=367  Identities=31%  Similarity=0.454  Sum_probs=242.7

Q ss_pred             ccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCC-ccCcEEECCCCcCCcCCCCCCCCCCCCc
Q psy16110        191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGC-DNLLELRMDHNRFTSIPSVSLNGPRALR  269 (719)
Q Consensus       191 L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~i~~~~l~~l~~L~  269 (719)
                      -+.|++++|+++.     +..+.|.++++|+.+++..|.++.+|.  |++. .+|+.|+|.+|.|+++...+++.++.|+
T Consensus        80 t~~LdlsnNkl~~-----id~~~f~nl~nLq~v~l~~N~Lt~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr  152 (873)
T KOG4194|consen   80 TQTLDLSNNKLSH-----IDFEFFYNLPNLQEVNLNKNELTRIPR--FGHESGHLEKLDLRHNLISSVTSEELSALPALR  152 (873)
T ss_pred             eeeeecccccccc-----CcHHHHhcCCcceeeeeccchhhhccc--ccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence            3344444444443     334456677777777777777777765  3333 4477777777777777776777777777


Q ss_pred             EEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEe
Q psy16110        270 ILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILN  349 (719)
Q Consensus       270 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~  349 (719)
                      +||||.|.|+.+....|..-.++++|+|++|.|+.+..+.|..+.+|..|.|+.|+++.++..     .|.++++|+.|+
T Consensus       153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r-----~Fk~L~~L~~Ld  227 (873)
T KOG4194|consen  153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR-----SFKRLPKLESLD  227 (873)
T ss_pred             hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHH-----Hhhhcchhhhhh
Confidence            777777777777777777767777777777777777777777777777777777777777665     345566777777


Q ss_pred             CCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCccEEE
Q psy16110        350 LGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLD  429 (719)
Q Consensus       350 L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~  429 (719)
                      |..|+|..++...|.|                                                        +++|+.|.
T Consensus       228 LnrN~irive~ltFqg--------------------------------------------------------L~Sl~nlk  251 (873)
T KOG4194|consen  228 LNRNRIRIVEGLTFQG--------------------------------------------------------LPSLQNLK  251 (873)
T ss_pred             ccccceeeehhhhhcC--------------------------------------------------------chhhhhhh
Confidence            7776665443333322                                                        23344444


Q ss_pred             ccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCC
Q psy16110        430 LSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT  509 (719)
Q Consensus       430 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  509 (719)
                      +..|.+..+...+|..+.++++|+|+.| .+..+..+.+-++++|+.|++++|.|..|....|..+++|+.|+|+.|+++
T Consensus       252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  252 LQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence            4444444444555566666666666666 566666655666677777777777777777667777777777777777777


Q ss_pred             CCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcC
Q psy16110        510 EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLF  589 (719)
Q Consensus       510 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  589 (719)
                      .++++.|..+..|++|+|++|+++.+...+|..+++|++|+|++|.++....+                          .
T Consensus       331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED--------------------------a  384 (873)
T KOG4194|consen  331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED--------------------------A  384 (873)
T ss_pred             cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec--------------------------c
Confidence            77777777777777777777777777666777777777777777765532211                          1


Q ss_pred             cCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCC
Q psy16110        590 PSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLN  653 (719)
Q Consensus       590 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  653 (719)
                      ...|..+++|+.|.+.+|++..++..+|.++..|+.|||.+|.|..+.+.+|+.+ .|++|.+.
T Consensus       385 a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  385 AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            2345566666777777777777777777777777777777777777666666666 66666554

>KOG0472|consensus

Probab=100.00  E-value=1.6e-41  Score=332.38  Aligned_cols=477  Identities=24%  Similarity=0.330  Sum_probs=347.5

Q ss_pred             ccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCC
Q psy16110        189 DTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRAL  268 (719)
Q Consensus       189 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L  268 (719)
                      ..|+.+.+++|.+...      .+++.++..|.+|++++|++...++ +++.+..++.|++++|++..+|+ .++.+.+|
T Consensus        45 v~l~~lils~N~l~~l------~~dl~nL~~l~vl~~~~n~l~~lp~-aig~l~~l~~l~vs~n~ls~lp~-~i~s~~~l  116 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVL------REDLKNLACLTVLNVHDNKLSQLPA-AIGELEALKSLNVSHNKLSELPE-QIGSLISL  116 (565)
T ss_pred             cchhhhhhccCchhhc------cHhhhcccceeEEEeccchhhhCCH-HHHHHHHHHHhhcccchHhhccH-HHhhhhhh
Confidence            5688888999887753      2467888899999999999988887 46778889999999999999987 68888899


Q ss_pred             cEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEE
Q psy16110        269 RILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHIL  348 (719)
Q Consensus       269 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L  348 (719)
                      +.++.++|.+..++ +.++.+..|+.++..+|+++..++ ++..+.+|..+++.+|+++..+++      .-.++.|++|
T Consensus       117 ~~l~~s~n~~~el~-~~i~~~~~l~dl~~~~N~i~slp~-~~~~~~~l~~l~~~~n~l~~l~~~------~i~m~~L~~l  188 (565)
T KOG0472|consen  117 VKLDCSSNELKELP-DSIGRLLDLEDLDATNNQISSLPE-DMVNLSKLSKLDLEGNKLKALPEN------HIAMKRLKHL  188 (565)
T ss_pred             hhhhccccceeecC-chHHHHhhhhhhhccccccccCch-HHHHHHHHHHhhccccchhhCCHH------HHHHHHHHhc
Confidence            99999999988885 457888889999999999887754 677888888999999999888875      2347888889


Q ss_pred             eCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCcc-CCCCccE
Q psy16110        349 NLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTK  427 (719)
Q Consensus       349 ~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~  427 (719)
                      |...|.++.            +|+.++.+.+|.-|++..|++..+|.+.-+..|+++.++.|++..++.... +++++..
T Consensus       189 d~~~N~L~t------------lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v  256 (565)
T KOG0472|consen  189 DCNSNLLET------------LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV  256 (565)
T ss_pred             ccchhhhhc------------CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence            988887754            455567788888889999998888888888888888888888888887666 4888888


Q ss_pred             EEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCC--CccEEEc--
Q psy16110        428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL--NLKYLCL--  503 (719)
Q Consensus       428 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~--~L~~L~L--  503 (719)
                      ||+.+|++++.+. .+.-+++|+.||+++| .++.+|.. ++++ .|+.|.+.+|.+..+..+.+..-+  -|++|.=  
T Consensus       257 LDLRdNklke~Pd-e~clLrsL~rLDlSNN-~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~  332 (565)
T KOG0472|consen  257 LDLRDNKLKEVPD-EICLLRSLERLDLSNN-DISSLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKI  332 (565)
T ss_pred             eeccccccccCch-HHHHhhhhhhhcccCC-ccccCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhh
Confidence            8888888888854 4456788888888888 78888765 5667 788888888887776554433211  1222211  


Q ss_pred             cCCcCC----------CCCh---hhhcCCCCCCEEeCCCCccccccCCccCCCC--CCCEEEccCCcCCcccCCcCCCCC
Q psy16110        504 AHNHLT----------EIPE---MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP--SMKRLDLSFNKLTTFKGDYFNTKS  568 (719)
Q Consensus       504 ~~n~l~----------~~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~~  568 (719)
                      ..-+++          ..+.   .......+.+.|++++-+++.++...|..-.  -...+++++|++..+|....... 
T Consensus       333 ~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lk-  411 (565)
T KOG0472|consen  333 KDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELK-  411 (565)
T ss_pred             ccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHH-
Confidence            000110          0000   1112344566667766666665444443222  25666777777666654432211 


Q ss_pred             CCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCC
Q psy16110        569 KPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLR  648 (719)
Q Consensus       569 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  648 (719)
                          ..+..+.+++|.+.-+ |..+..+++|..|++++|-+..+|.+ ++.+..|+.||++.|+|..+|. ....+..++
T Consensus       412 ----elvT~l~lsnn~isfv-~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~lP~-~~y~lq~lE  484 (565)
T KOG0472|consen  412 ----ELVTDLVLSNNKISFV-PLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRMLPE-CLYELQTLE  484 (565)
T ss_pred             ----HHHHHHHhhcCccccc-hHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccchH-HHhhHHHHH
Confidence                1233445555555443 66677788888888888888888877 4566778888888888877665 445556677


Q ss_pred             EEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceee
Q psy16110        649 KLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQ  706 (719)
Q Consensus       649 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~  706 (719)
                      .+-.++|++..+++..+.++.+|.+||+.+|.+..||+. ++++++| ++.+.||||.+
T Consensus       485 tllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  485 TLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             HHHhccccccccChHHhhhhhhcceeccCCCchhhCChh-hccccceeEEEecCCccCC
Confidence            777777888888888788888888888888888888885 5888888 88888888864

>KOG0472|consensus

Probab=100.00  E-value=5.8e-41  Score=328.38  Aligned_cols=479  Identities=25%  Similarity=0.365  Sum_probs=375.9

Q ss_pred             cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110        165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL  244 (719)
Q Consensus       165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  244 (719)
                      .++.+++++|.++.+.+..  ..+..|.+|++++|++...      +.+++.+..++.++.++|++..+++. ++.+.+|
T Consensus        46 ~l~~lils~N~l~~l~~dl--~nL~~l~vl~~~~n~l~~l------p~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l  116 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLREDL--KNLACLTVLNVHDNKLSQL------PAAIGELEALKSLNVSHNKLSELPEQ-IGSLISL  116 (565)
T ss_pred             chhhhhhccCchhhccHhh--hcccceeEEEeccchhhhC------CHHHHHHHHHHHhhcccchHhhccHH-Hhhhhhh
Confidence            4889999999998877766  4678899999999998753      24778889999999999999988874 6778999


Q ss_pred             cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCC
Q psy16110        245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN  324 (719)
Q Consensus       245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  324 (719)
                      +.|+.++|.+.++++ .++.+..|..++..+|++++++ .++..+.+|..+++.+|.+...++..+. ++.|++||...|
T Consensus       117 ~~l~~s~n~~~el~~-~i~~~~~l~dl~~~~N~i~slp-~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N  193 (565)
T KOG0472|consen  117 VKLDCSSNELKELPD-SIGRLLDLEDLDATNNQISSLP-EDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSN  193 (565)
T ss_pred             hhhhccccceeecCc-hHHHHhhhhhhhccccccccCc-hHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchh
Confidence            999999999999988 5888899999999999999885 5577888999999999999988887666 999999999999


Q ss_pred             CCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCC--cchhccC
Q psy16110        325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES--TGLEDTL  402 (719)
Q Consensus       325 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~--~~~~~~L  402 (719)
                      -++.+++      .++.+.+|+.|++.+|+|..++             .|..|..|++++++.|.+..+|+  ...++++
T Consensus       194 ~L~tlP~------~lg~l~~L~~LyL~~Nki~~lP-------------ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l  254 (565)
T KOG0472|consen  194 LLETLPP------ELGGLESLELLYLRRNKIRFLP-------------EFPGCSLLKELHVGENQIEMLPAEHLKHLNSL  254 (565)
T ss_pred             hhhcCCh------hhcchhhhHHHHhhhcccccCC-------------CCCccHHHHHHHhcccHHHhhHHHHhcccccc
Confidence            9999988      4788899999999999987655             35567888999999998888876  3456788


Q ss_pred             CEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCC--CccEEE--
Q psy16110        403 DNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLK--KLEVLD--  478 (719)
Q Consensus       403 ~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~--~L~~L~--  478 (719)
                      ..|++++|+++++|+.+.-+.+|+.||+|+|.|++.+ ..++++ .|+.|.+.+| .+..+-.+.++.-+  -|++|.  
T Consensus       255 ~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp-~sLgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~  331 (565)
T KOG0472|consen  255 LVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLP-YSLGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSK  331 (565)
T ss_pred             eeeeccccccccCchHHHHhhhhhhhcccCCccccCC-cccccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHh
Confidence            8999999999999988888888999999999998885 457888 8899999998 44443322221110  011110  


Q ss_pred             -----cCCCC---CCC--CCc---hhhcCCCCccEEEccCCcCCCCChhhhcCCC--CCCEEeCCCCccccccCCccCCC
Q psy16110        479 -----LAATG---LKS--IPQ---YQFDELLNLKYLCLAHNHLTEIPEMMFKNLL--NLTYLDLSNNNIVNLRVGSLYGL  543 (719)
Q Consensus       479 -----ls~n~---l~~--~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~l~~l  543 (719)
                           ++...   .+.  .+.   .......+.+.|++++-+++.+|.+.|....  -....+++.|++..+ |..+..+
T Consensus       332 ~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~el-Pk~L~~l  410 (565)
T KOG0472|consen  332 IKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCEL-PKRLVEL  410 (565)
T ss_pred             hccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhh-hhhhHHH
Confidence                 11110   000  011   1223356788899999999999998887543  377899999998876 5555555


Q ss_pred             CCCC-EEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCC
Q psy16110        544 PSMK-RLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSY  622 (719)
Q Consensus       544 ~~L~-~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  622 (719)
                      ..+. .+.+++|.+. +++..+.     .+++|..|+|++|.+..+ |..++.+..|++|+++.|+|..+|.. +..+..
T Consensus       411 kelvT~l~lsnn~is-fv~~~l~-----~l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~NrFr~lP~~-~y~lq~  482 (565)
T KOG0472|consen  411 KELVTDLVLSNNKIS-FVPLELS-----QLQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFNRFRMLPEC-LYELQT  482 (565)
T ss_pred             HHHHHHHHhhcCccc-cchHHHH-----hhhcceeeecccchhhhc-chhhhhhhhhheecccccccccchHH-HhhHHH
Confidence            5444 4455555554 4443333     459999999999988877 77888888899999999999988854 566777


Q ss_pred             CCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHh
Q psy16110        623 LQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERL  688 (719)
Q Consensus       623 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~  688 (719)
                      ++.+-.++|++..+++..+.++.+|..||+.+|.+..+||. ++++++|++|++++|+|+ .|++.
T Consensus       483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr-~Pr~~  546 (565)
T KOG0472|consen  483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFR-QPRHQ  546 (565)
T ss_pred             HHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh-hccccceeEEEecCCccC-CCHHH
Confidence            88888888999999998899999999999999999999885 899999999999999998 66654

>KOG0618|consensus

Probab=100.00  E-value=1.2e-37  Score=334.85  Aligned_cols=466  Identities=25%  Similarity=0.318  Sum_probs=214.2

Q ss_pred             ccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCc
Q psy16110        166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLL  245 (719)
Q Consensus       166 L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  245 (719)
                      ++.|+++.|.+...|-.+..+ .-+|+.|++++|.++. +|     ..+..+++|+.|+++.|.|...+. ...++.+|+
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~-~v~L~~l~lsnn~~~~-fp-----~~it~l~~L~~ln~s~n~i~~vp~-s~~~~~~l~   94 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEK-RVKLKSLDLSNNQISS-FP-----IQITLLSHLRQLNLSRNYIRSVPS-SCSNMRNLQ   94 (1081)
T ss_pred             HHhhhccccccccCchHHhhh-eeeeEEeecccccccc-CC-----chhhhHHHHhhcccchhhHhhCch-hhhhhhcch
Confidence            444555555444433222221 1225555555554442 11     133344455555555555544442 234445555


Q ss_pred             EEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEcc-------------------CCCCcccC
Q psy16110        246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILR-------------------GNRLTTIE  306 (719)
Q Consensus       246 ~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-------------------~n~i~~~~  306 (719)
                      +|.|.+|.+...|. .+..+++|++|++++|.+..++ ..+..+..++.+..+                   .|.+.+-.
T Consensus        95 ~lnL~~n~l~~lP~-~~~~lknl~~LdlS~N~f~~~P-l~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~  172 (1081)
T KOG0618|consen   95 YLNLKNNRLQSLPA-SISELKNLQYLDLSFNHFGPIP-LVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSF  172 (1081)
T ss_pred             hheeccchhhcCch-hHHhhhcccccccchhccCCCc-hhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccch
Confidence            55555555555544 3445555555555555544442 223344444444444                   44444333


Q ss_pred             cccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECC
Q psy16110        307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLN  386 (719)
Q Consensus       307 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~  386 (719)
                      ..++..++.  .|+|.+|.+..+        .+..+.+|+.|....|++..+..               .-++|+.|+.+
T Consensus       173 ~~~i~~l~~--~ldLr~N~~~~~--------dls~~~~l~~l~c~rn~ls~l~~---------------~g~~l~~L~a~  227 (1081)
T KOG0618|consen  173 LIDIYNLTH--QLDLRYNEMEVL--------DLSNLANLEVLHCERNQLSELEI---------------SGPSLTALYAD  227 (1081)
T ss_pred             hcchhhhhe--eeecccchhhhh--------hhhhccchhhhhhhhcccceEEe---------------cCcchheeeec
Confidence            333333333  355555554421        12334445555555554443321               12345555555


Q ss_pred             CCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCC
Q psy16110        387 GNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVG  466 (719)
Q Consensus       387 ~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~  466 (719)
                      +|.++.......+.+|++++++.|.++.++.+                        +..+.+|+.++..+| .+..+|..
T Consensus       228 ~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~w------------------------i~~~~nle~l~~n~N-~l~~lp~r  282 (1081)
T KOG0618|consen  228 HNPLTTLDVHPVPLNLQYLDISHNNLSNLPEW------------------------IGACANLEALNANHN-RLVALPLR  282 (1081)
T ss_pred             cCcceeeccccccccceeeecchhhhhcchHH------------------------HHhcccceEecccch-hHHhhHHH
Confidence            55444333333344444444444444444444                        444445555555444 33444433


Q ss_pred             CCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCC-CCEEeCCCCccccccCCccCCCCC
Q psy16110        467 GFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN-LTYLDLSNNNIVNLRVGSLYGLPS  545 (719)
Q Consensus       467 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~l~~l~~  545 (719)
                      . ...++|+.|.+.+|.+..+++ ..+....|++|+|..|.+..+|...|..... |+.|+.+.|++.......-..++.
T Consensus       283 i-~~~~~L~~l~~~~nel~yip~-~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~  360 (1081)
T KOG0618|consen  283 I-SRITSLVSLSAAYNELEYIPP-FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAA  360 (1081)
T ss_pred             H-hhhhhHHHHHhhhhhhhhCCC-cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHH
Confidence            2 223445555555555554443 2233445555555555555555544333332 444444544444432211223344


Q ss_pred             CCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110        546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE  625 (719)
Q Consensus       546 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  625 (719)
                      |+.|++.+|.+++--...+     .+..+|++|+|++|++.......+.++..|++|+||||+++.+|. .+.++..|++
T Consensus       361 Lq~LylanN~Ltd~c~p~l-----~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~-tva~~~~L~t  434 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPVL-----VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD-TVANLGRLHT  434 (1081)
T ss_pred             HHHHHHhcCcccccchhhh-----ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH-HHHhhhhhHH
Confidence            5555555555543222222     123555555555555555544455555555555555555555553 2455555555


Q ss_pred             EECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCC-cccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCC
Q psy16110        626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS-ETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPN  702 (719)
Q Consensus       626 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N  702 (719)
                      |...+|.+...|  .+..++.|+.+|++.|+++.+. +.... -++|++||+++|.-..+....|..+.++ .+++.=|
T Consensus       435 L~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  435 LRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             HhhcCCceeech--hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            555555555554  2455555555555555555432 22211 1555666666554444444445555444 3333333

>KOG0618|consensus

Probab=100.00  E-value=8.2e-38  Score=336.01  Aligned_cols=487  Identities=28%  Similarity=0.332  Sum_probs=397.4

Q ss_pred             EEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEE
Q psy16110        168 RLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLEL  247 (719)
Q Consensus       168 ~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  247 (719)
                      .+|.|..+++-||..++. . ..+..|+++.|.+-.. |    .+...+..+|+.||+++|++...+. .+..+.+|+.|
T Consensus         2 ~vd~s~~~l~~ip~~i~~-~-~~~~~ln~~~N~~l~~-p----l~~~~~~v~L~~l~lsnn~~~~fp~-~it~l~~L~~l   73 (1081)
T KOG0618|consen    2 HVDASDEQLELIPEQILN-N-EALQILNLRRNSLLSR-P----LEFVEKRVKLKSLDLSNNQISSFPI-QITLLSHLRQL   73 (1081)
T ss_pred             CcccccccCcccchhhcc-H-HHHHhhhccccccccC-c----hHHhhheeeeEEeeccccccccCCc-hhhhHHHHhhc
Confidence            468888899999999885 3 3499999999976542 1    2455667779999999999988776 46778999999


Q ss_pred             ECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCC-CC
Q psy16110        248 RMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN-RL  326 (719)
Q Consensus       248 ~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l  326 (719)
                      +++.|.|.++|. +..++.+|++|+|.+|.+..+ |..+..+.+|++|+++.|.+..++. .+..++.+..+..++| ++
T Consensus        74 n~s~n~i~~vp~-s~~~~~~l~~lnL~~n~l~~l-P~~~~~lknl~~LdlS~N~f~~~Pl-~i~~lt~~~~~~~s~N~~~  150 (1081)
T KOG0618|consen   74 NLSRNYIRSVPS-SCSNMRNLQYLNLKNNRLQSL-PASISELKNLQYLDLSFNHFGPIPL-VIEVLTAEEELAASNNEKI  150 (1081)
T ss_pred             ccchhhHhhCch-hhhhhhcchhheeccchhhcC-chhHHhhhcccccccchhccCCCch-hHHhhhHHHHHhhhcchhh
Confidence            999999999995 789999999999999998877 5779999999999999999988764 6788899999999999 22


Q ss_pred             CCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEE
Q psy16110        327 NKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLN  406 (719)
Q Consensus       327 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~  406 (719)
                      ..+          +... ++.+++..|.+.           +.++.....+..  .|+|.+|.+. .-....+..|+.|.
T Consensus       151 ~~l----------g~~~-ik~~~l~~n~l~-----------~~~~~~i~~l~~--~ldLr~N~~~-~~dls~~~~l~~l~  205 (1081)
T KOG0618|consen  151 QRL----------GQTS-IKKLDLRLNVLG-----------GSFLIDIYNLTH--QLDLRYNEME-VLDLSNLANLEVLH  205 (1081)
T ss_pred             hhh----------cccc-chhhhhhhhhcc-----------cchhcchhhhhe--eeecccchhh-hhhhhhccchhhhh
Confidence            222          2222 677777777653           223333333444  6999999988 44456667899999


Q ss_pred             ccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCC
Q psy16110        407 VRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKS  486 (719)
Q Consensus       407 l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~  486 (719)
                      ...|++..+.   ...++|+.|+.++|.++.....  .--.+|++++++.| .+..+| +....+.+|+.++..+|.+..
T Consensus       206 c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n-~l~~lp-~wi~~~~nle~l~~n~N~l~~  278 (1081)
T KOG0618|consen  206 CERNQLSELE---ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHN-NLSNLP-EWIGACANLEALNANHNRLVA  278 (1081)
T ss_pred             hhhcccceEE---ecCcchheeeeccCcceeeccc--cccccceeeecchh-hhhcch-HHHHhcccceEecccchhHHh
Confidence            9999888764   3457899999999999865432  23468999999999 899999 778899999999999999988


Q ss_pred             CCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCC-CCEEEccCCcCCcccCCcCC
Q psy16110        487 IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS-MKRLDLSFNKLTTFKGDYFN  565 (719)
Q Consensus       487 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~  565 (719)
                      ++.. +....+|+.|.+..|.+..+++. ....++|++|+|..|++....+..+..... |+.|+.+.|++...+...  
T Consensus       279 lp~r-i~~~~~L~~l~~~~nel~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~--  354 (1081)
T KOG0618|consen  279 LPLR-ISRITSLVSLSAAYNELEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE--  354 (1081)
T ss_pred             hHHH-HhhhhhHHHHHhhhhhhhhCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc--
Confidence            8864 45678999999999999999874 466899999999999999887766665554 889999999988766221  


Q ss_pred             CCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCC
Q psy16110        566 TKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP  645 (719)
Q Consensus       566 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  645 (719)
                      .   ...+.|+.|++-+|.+++..-..+.+.++|+.|+|++|++..+|...+.+++.|+.|+||||+++.++. .+.+++
T Consensus       355 e---~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~-tva~~~  430 (1081)
T KOG0618|consen  355 E---NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD-TVANLG  430 (1081)
T ss_pred             c---hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH-HHHhhh
Confidence            1   235789999999999998877789999999999999999999999999999999999999999999985 788999


Q ss_pred             CCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeee
Q psy16110        646 RLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQS  707 (719)
Q Consensus       646 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~  707 (719)
                      .|+.|...+|++...|.  +..+++|+.+|+|.|.++.+.-..-..-+.| +||++||+....
T Consensus       431 ~L~tL~ahsN~l~~fPe--~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~  491 (1081)
T KOG0618|consen  431 RLHTLRAHSNQLLSFPE--LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVF  491 (1081)
T ss_pred             hhHHHhhcCCceeechh--hhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccccc
Confidence            99999999999998883  7889999999999999985432211222789 999999996544

>KOG4237|consensus

Probab=99.97  E-value=1.2e-33  Score=277.04  Aligned_cols=171  Identities=26%  Similarity=0.451  Sum_probs=101.7

Q ss_pred             CCCCcCCCCCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCC
Q psy16110         96 PCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNA  175 (719)
Q Consensus        96 ~c~~~~~~~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~  175 (719)
                      .|......||.+|+|....  +..|+|++.+++     .||..+               |        ...+.++|..|.
T Consensus        29 ~C~~~~~~CP~pC~Cs~~~--g~~VdCr~~GL~-----eVP~~L---------------P--------~~tveirLdqN~   78 (498)
T KOG4237|consen   29 TCAHSASACPAPCTCSDVE--GGIVDCRGKGLT-----EVPANL---------------P--------PETVEIRLDQNQ   78 (498)
T ss_pred             hhhhccccCCCCcccCCCC--CceEEccCCCcc-----cCcccC---------------C--------CcceEEEeccCC
Confidence            6776667889999998532  689999987776     444432               2        247889999999


Q ss_pred             ccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCC
Q psy16110        176 LRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFT  255 (719)
Q Consensus       176 i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  255 (719)
                      |+.||+.+|. .+++||.||||+|.|+.     |.+.+|.++++|..|-+.+                       +|+|+
T Consensus        79 I~~iP~~aF~-~l~~LRrLdLS~N~Is~-----I~p~AF~GL~~l~~Lvlyg-----------------------~NkI~  129 (498)
T KOG4237|consen   79 ISSIPPGAFK-TLHRLRRLDLSKNNISF-----IAPDAFKGLASLLSLVLYG-----------------------NNKIT  129 (498)
T ss_pred             cccCChhhcc-chhhhceecccccchhh-----cChHhhhhhHhhhHHHhhc-----------------------CCchh
Confidence            9999998774 44555555555555543     3344444444444444433                       14444


Q ss_pred             cCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCC
Q psy16110        256 SIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR  325 (719)
Q Consensus       256 ~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  325 (719)
                      .+|..+|+++..|+.|.+.-|++.-+..++|..+++|..|.+-+|.+..+..++|..+..++.+++..|.
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            4444444455555555555555544444555555555555555555555555555555555555555554

>KOG0444|consensus

Probab=99.96  E-value=3e-32  Score=280.24  Aligned_cols=357  Identities=27%  Similarity=0.374  Sum_probs=198.1

Q ss_pred             cCEEEccCCCCc-ccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCccccc
Q psy16110        292 LERIILRGNRLT-TIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITI  370 (719)
Q Consensus       292 L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~  370 (719)
                      .+-.|+++|.++ +-.|.....+++++.|.|...++..++.      .++.+.+|++|.+++|++..+..          
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPe------EL~~lqkLEHLs~~HN~L~~vhG----------   72 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPE------ELSRLQKLEHLSMAHNQLISVHG----------   72 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChH------HHHHHhhhhhhhhhhhhhHhhhh----------
Confidence            444555555555 2234445555555555555555555554      34455555555555555543321          


Q ss_pred             ccccccCCCccEEECCCCCCcC--cCC-cchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCC
Q psy16110        371 FSFFQDFQKLKSLDLNGNFLIN--LES-TGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVP  447 (719)
Q Consensus       371 ~~~l~~~~~L~~L~L~~n~l~~--~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  447 (719)
                        .++.++.|+.+.+..|++..  +|. +..+..|+.|++++|+++..|...-.-+++-.|+||+|+|..|+...|.++.
T Consensus        73 --ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt  150 (1255)
T KOG0444|consen   73 --ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT  150 (1255)
T ss_pred             --hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence              23345555555555554432  222 2223344444455555544444443445556666666666666666666666


Q ss_pred             cCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCc--CCCCChhhhcCCCCCCEE
Q psy16110        448 TLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNH--LTEIPEMMFKNLLNLTYL  525 (719)
Q Consensus       448 ~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L  525 (719)
                      .|-.|+|++| .+..+|+. ...+..|++|++++|.+.......+..+++|+.|.+++.+  +..+|.. +..+.+|..+
T Consensus       151 DLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dv  227 (1255)
T KOG0444|consen  151 DLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDV  227 (1255)
T ss_pred             hHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhc
Confidence            6666666666 66666654 3455666666666665554444444455666666666653  2244432 4556666666


Q ss_pred             eCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcC
Q psy16110        526 DLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLA  605 (719)
Q Consensus       526 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  605 (719)
                      |+|.|.+..+ |..+..+++|+.|+|++|+++.+....      ....+|+.|++|.|+++.. |.++..++.|+.|++.
T Consensus       228 DlS~N~Lp~v-Pecly~l~~LrrLNLS~N~iteL~~~~------~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n  299 (1255)
T KOG0444|consen  228 DLSENNLPIV-PECLYKLRNLRRLNLSGNKITELNMTE------GEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYAN  299 (1255)
T ss_pred             cccccCCCcc-hHHHhhhhhhheeccCcCceeeeeccH------HHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhc
Confidence            6666665544 556666666666666666666443221      1235566666666666654 5566666666666666


Q ss_pred             CCCCC--CcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCc
Q psy16110        606 FNKFN--YFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNR  680 (719)
Q Consensus       606 ~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  680 (719)
                      +|+++  ++|.. ++.+.+|+++..++|.+.-.+. .++.|++|+.|.|+.|++..++. ++--++.|+.||+..|+
T Consensus       300 ~NkL~FeGiPSG-IGKL~~Levf~aanN~LElVPE-glcRC~kL~kL~L~~NrLiTLPe-aIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  300 NNKLTFEGIPSG-IGKLIQLEVFHAANNKLELVPE-GLCRCVKLQKLKLDHNRLITLPE-AIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             cCcccccCCccc-hhhhhhhHHHHhhccccccCch-hhhhhHHHHHhcccccceeechh-hhhhcCCcceeeccCCc
Confidence            66544  45543 5666666666666666554443 56666666666666666665543 34455666666666663

>KOG0444|consensus

Probab=99.95  E-value=6.4e-31  Score=270.51  Aligned_cols=364  Identities=23%  Similarity=0.331  Sum_probs=198.9

Q ss_pred             CccCcEEECCCCcCC--cCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcE
Q psy16110        241 CDNLLELRMDHNRFT--SIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHI  318 (719)
Q Consensus       241 l~~L~~L~L~~n~l~--~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  318 (719)
                      ++-.+-.|+++|.++  .+|. ....++.++.|.|...++..+ |+.++.+.+|++|.+++|++..+. +.+..++.|+.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~-~v~qMt~~~WLkLnrt~L~~v-PeEL~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPH-DVEQMTQMTWLKLNRTKLEQV-PEELSRLQKLEHLSMAHNQLISVH-GELSDLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcCch-hHHHhhheeEEEechhhhhhC-hHHHHHHhhhhhhhhhhhhhHhhh-hhhccchhhHH
Confidence            344556677777776  3554 466677777777777777666 455677777777777777776664 34666777777


Q ss_pred             EEcCCCCCCC--cCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCC-
Q psy16110        319 LNLGYNRLNK--LNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES-  395 (719)
Q Consensus       319 L~L~~n~l~~--~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-  395 (719)
                      +++..|++..  ++.+      +-.+..|+.|||++|+++.++            ..+..-+++-.|+||+|+|..+|. 
T Consensus        83 v~~R~N~LKnsGiP~d------iF~l~dLt~lDLShNqL~EvP------------~~LE~AKn~iVLNLS~N~IetIPn~  144 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTD------IFRLKDLTILDLSHNQLREVP------------TNLEYAKNSIVLNLSYNNIETIPNS  144 (1255)
T ss_pred             HhhhccccccCCCCch------hcccccceeeecchhhhhhcc------------hhhhhhcCcEEEEcccCccccCCch
Confidence            7777776643  4443      234566677777777665443            234445566666666666666654 


Q ss_pred             -cchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCC-CCCCCCCCCCCCCC
Q psy16110        396 -TGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAH-LSSLPVGGFDPLKK  473 (719)
Q Consensus       396 -~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~-l~~l~~~~~~~l~~  473 (719)
                       +..+..|-.|++++|++..+|+.+-.+..|++|+|++|.+....-..+..+++|+.|.+++... +..+|.. +..+.+
T Consensus       145 lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~N  223 (1255)
T KOG0444|consen  145 LFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHN  223 (1255)
T ss_pred             HHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhh
Confidence             2333455566666666666666555566666666666655543333334445555555555422 2233322 344555


Q ss_pred             ccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccC
Q psy16110        474 LEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSF  553 (719)
Q Consensus       474 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~  553 (719)
                      |..+|+|.|.+..+|. .+-.+++|+.|+|++|+|+++... ...-.+|++|++|.|+++.. |.++.++++|+.|.+.+
T Consensus       224 L~dvDlS~N~Lp~vPe-cly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~  300 (1255)
T KOG0444|consen  224 LRDVDLSENNLPIVPE-CLYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANN  300 (1255)
T ss_pred             hhhccccccCCCcchH-HHhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhcc
Confidence            5555555555555443 344555555555555555544332 12224555555555555544 45555555555555555


Q ss_pred             CcCC--cccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCC
Q psy16110        554 NKLT--TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN  631 (719)
Q Consensus       554 n~l~--~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  631 (719)
                      |+++  ++|..      ++.+..|+++..++|.+.-+ |+.+.+|..|+.|.|++|++..+|. +++-++.|++||++.|
T Consensus       301 NkL~FeGiPSG------IGKL~~Levf~aanN~LElV-PEglcRC~kL~kL~L~~NrLiTLPe-aIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  301 NKLTFEGIPSG------IGKLIQLEVFHAANNKLELV-PEGLCRCVKLQKLKLDHNRLITLPE-AIHLLPDLKVLDLREN  372 (1255)
T ss_pred             CcccccCCccc------hhhhhhhHHHHhhccccccC-chhhhhhHHHHHhcccccceeechh-hhhhcCCcceeeccCC
Confidence            5543  11111      12234455555554444332 4455555555555555555544443 2444555555555555


Q ss_pred             CCcccC
Q psy16110        632 QLKTID  637 (719)
Q Consensus       632 ~l~~~~  637 (719)
                      .-...+
T Consensus       373 pnLVMP  378 (1255)
T KOG0444|consen  373 PNLVMP  378 (1255)
T ss_pred             cCccCC
Confidence            433333

>KOG4237|consensus

Probab=99.94  E-value=2.3e-29  Score=247.06  Aligned_cols=416  Identities=23%  Similarity=0.309  Sum_probs=239.6

Q ss_pred             cCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccC-CCCcccCcccccCcccCcEEEc
Q psy16110        243 NLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRG-NRLTTIEGGAFNGLAKIHILNL  321 (719)
Q Consensus       243 ~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L  321 (719)
                      .-..++|..|+|+.||+.+|+.+++|+.||||+|+|+.|.+++|.++.+|..|-+-+ |+|+.++.++|+++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            345566666666666666666666666666666666666666666666665554443 6666666666666666666666


Q ss_pred             CCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhcc
Q psy16110        322 GYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDT  401 (719)
Q Consensus       322 ~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~  401 (719)
                      .-|++..+..+     +|..++++..|.+..|.+..+....|.+           +..++.+.+..|.+...=...+.  
T Consensus       148 Nan~i~Cir~~-----al~dL~~l~lLslyDn~~q~i~~~tf~~-----------l~~i~tlhlA~np~icdCnL~wl--  209 (498)
T KOG4237|consen  148 NANHINCIRQD-----ALRDLPSLSLLSLYDNKIQSICKGTFQG-----------LAAIKTLHLAQNPFICDCNLPWL--  209 (498)
T ss_pred             ChhhhcchhHH-----HHHHhhhcchhcccchhhhhhccccccc-----------hhccchHhhhcCccccccccchh--
Confidence            66666665555     3445666666666666665555444433           44556666655543211100000  


Q ss_pred             CCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCC-CcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcC
Q psy16110        402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNV-PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA  480 (719)
Q Consensus       402 L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls  480 (719)
                       .. ++..+.+     ............+.+.++..+.+..|... .++..=-.+.+......|...|..+++|+.|+++
T Consensus       210 -a~-~~a~~~i-----etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls  282 (498)
T KOG4237|consen  210 -AD-DLAMNPI-----ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS  282 (498)
T ss_pred             -hh-HHhhchh-----hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence             00 0000000     00111112222333444444444444321 1111111122224555666678889999999999


Q ss_pred             CCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcc-
Q psy16110        481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTF-  559 (719)
Q Consensus       481 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-  559 (719)
                      +|+++.|...+|.+...++.|.|..|++..+....|.++..|+.|+|.+|+|+.+.|.+|..+.+|.+|++-.|++.-- 
T Consensus       283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC  362 (498)
T KOG4237|consen  283 NNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC  362 (498)
T ss_pred             CCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence            9999999989999999999999999999999888999999999999999999999999999999999999988875410 


Q ss_pred             ----cCCcCCCC------CCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCC-EEEC
Q psy16110        560 ----KGDYFNTK------SKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ-EIDL  628 (719)
Q Consensus       560 ----~~~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L  628 (719)
                          -+++....      ....-..++.+++++..+...--      ..=++..   +  ..-+ ..-..++-+. +...
T Consensus       363 ~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c------~~~ee~~---~--~~s~-~cP~~c~c~~tVvRc  430 (498)
T KOG4237|consen  363 RLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRC------GGPEELG---C--LTSS-PCPPPCTCLDTVVRC  430 (498)
T ss_pred             chHHHHHHHhhCCCCCCCCCCCCchhccccchhcccccccc------CCccccC---C--CCCC-CCCCCcchhhhhHhh
Confidence                00011000      00011234444444433322100      0000000   0  0000 0001223332 3344


Q ss_pred             CCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCC
Q psy16110        629 SNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPN  702 (719)
Q Consensus       629 s~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N  702 (719)
                      |+..+..+++. +  ...-.++++.+|.++.++.+   .+.+| .+|+|+|+++.+....|.++++| .+.+++|
T Consensus       431 Snk~lk~lp~~-i--P~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  431 SNKLLKLLPRG-I--PVDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cccchhhcCCC-C--CchhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            44444444431 1  12456778888888888776   34566 88888888888888888888888 8887776

>PLN03210 Resistant to P

Probab=99.88  E-value=4.5e-21  Score=231.27  Aligned_cols=336  Identities=24%  Similarity=0.280  Sum_probs=226.2

Q ss_pred             CCCcccCCCccCEEEccCCCC------cccCcccccCc-ccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCC
Q psy16110        282 KADSFLSQRWLERIILRGNRL------TTIEGGAFNGL-AKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNR  354 (719)
Q Consensus       282 ~~~~~~~l~~L~~L~Ls~n~i------~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~  354 (719)
                      ...+|.++.+|+.|.+..+..      ....+..|..+ .+|+.|++.++++..++..      + ...+|+.|++.+++
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~------f-~~~~L~~L~L~~s~  622 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN------F-RPENLVKLQMQGSK  622 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc------C-CccCCcEEECcCcc
Confidence            345567777777777755432      11223445444 3588888888877777652      2 35678888888877


Q ss_pred             CCccccccccCcccccccccccCCCccEEECCCC-CCcCcCCcchhccCCEEEccCCc-ccccccCccCCCCccEEEccC
Q psy16110        355 LNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN-FLINLESTGLEDTLDNLNVRDNQ-ITTLSSSALNYKLLTKLDLSH  432 (719)
Q Consensus       355 l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~Ls~  432 (719)
                      +..+.            ..+..+++|+.|+++++ .+..+|.....++|+.|++++|. +..++..+..+++|+.|++++
T Consensus       623 l~~L~------------~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~  690 (1153)
T PLN03210        623 LEKLW------------DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR  690 (1153)
T ss_pred             ccccc------------cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence            75443            23445778888888776 45666666667788888888764 555665555678888888888


Q ss_pred             CC-CCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCC--
Q psy16110        433 NN-LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT--  509 (719)
Q Consensus       433 n~-l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--  509 (719)
                      |. +..++. .+ ++++|+.|++++|..++.+|..    ..+|+.|++++|.+..+|..  ..+++|++|.+.++...  
T Consensus       691 c~~L~~Lp~-~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP~~--~~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        691 CENLEILPT-GI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEFPSN--LRLENLDELILCEMKSEKL  762 (1153)
T ss_pred             CCCcCccCC-cC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccccccc--ccccccccccccccchhhc
Confidence            64 444433 22 6788888888888666666532    46788888888888777653  24677777777764322  


Q ss_pred             -----CCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCc-CCcccCCcCCCCCCCCCCCCcEEECcCC
Q psy16110        510 -----EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK-LTTFKGDYFNTKSKPNTSSLEELNLNNN  583 (719)
Q Consensus       510 -----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~n  583 (719)
                           .+.+..+...++|++|++++|......|..+.++++|+.|++++|. +..+|...       .+++|+.|++++|
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~Ls~c  835 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------NLESLESLDLSGC  835 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------CccccCEEECCCC
Confidence                 2222223345688888888887666667788888888888888863 55544332       3578888888887


Q ss_pred             CCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCC-CCcccCcccCCCCCCCCEEeCCCCc
Q psy16110        584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN-QLKTIDDYDYGYLPRLRKLNLNNNN  656 (719)
Q Consensus       584 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~N~  656 (719)
                      .....+|..   .++|++|+|++|.++.+|.. +..+++|+.|++++| ++..++. .+..+++|+.+++++|.
T Consensus       836 ~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~s-i~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        836 SRLRTFPDI---STNISDLNLSRTGIEEVPWW-IEKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETVDFSDCG  904 (1153)
T ss_pred             Ccccccccc---ccccCEeECCCCCCccChHH-HhcCCCCCEEECCCCCCcCccCc-ccccccCCCeeecCCCc
Confidence            654444432   36788888888888887754 678888888888884 5555554 56677888888888774

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=2.3e-21  Score=233.82  Aligned_cols=343  Identities=22%  Similarity=0.249  Sum_probs=213.0

Q ss_pred             cccCCCCCCEEeCCCCCCCccccccccCcccccccccccC-CCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccc
Q psy16110        338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDF-QKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS  416 (719)
Q Consensus       338 ~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~-~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~  416 (719)
                      +|.++++|+.|.+..+......     .....+|..+..+ .+|+.|.+.++.+..+|....+.+|++|++.++.+..++
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~-----~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~  627 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKK-----EVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLW  627 (1153)
T ss_pred             HHhcCccccEEEEecccccccc-----cceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccc
Confidence            4556666666666554322100     0011233444444 357777777777777776445567777777777777776


Q ss_pred             cCccCCCCccEEEccCCC-CCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCC-CCCCCCchhhcC
Q psy16110        417 SSALNYKLLTKLDLSHNN-LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAAT-GLKSIPQYQFDE  494 (719)
Q Consensus       417 ~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~  494 (719)
                      .....+++|+.|+++++. +..++  .++.+++|++|++++|..+..+|.. +..+++|+.|++++| .+..++...  +
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i--~  702 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGI--N  702 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcC--C
Confidence            666567778888887764 33333  2566777888888777667777654 567777888888776 455555432  5


Q ss_pred             CCCccEEEccCCc-CCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCC--CCCCCC
Q psy16110        495 LLNLKYLCLAHNH-LTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFN--TKSKPN  571 (719)
Q Consensus       495 ~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~  571 (719)
                      +++|++|++++|. +..++.    ...+|++|++++|.+..+ |..+ .+++|++|.+.++....+......  ......
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~  776 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML  776 (1153)
T ss_pred             CCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccc-cccc-cccccccccccccchhhccccccccchhhhhc
Confidence            6777788887773 333332    235677788887777655 3322 567777777766443222111100  000112


Q ss_pred             CCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCC-CCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEE
Q psy16110        572 TSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFN-KFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKL  650 (719)
Q Consensus       572 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  650 (719)
                      .++|+.|++++|.....+|..++.+++|+.|++++| .+..+|...  ++++|+.|++++|......+.   ..++|++|
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L  851 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPD---ISTNISDL  851 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCccccccc---cccccCEe
Confidence            367788888887766666777778888888888776 455666542  577788888887644322221   23567788


Q ss_pred             eCCCCcCCCCCcccCCCCCCCcEEECCCC-cCCCcChHhhcCcccc-EEecCCCc
Q psy16110        651 NLNNNNIDAISETCFFNSSQLQIINLSFN-RLEKLPERLFNTFLYT-NYDMAPNL  703 (719)
Q Consensus       651 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L-~L~l~~N~  703 (719)
                      +|++|.++.++. .+..+++|++|++++| +++.+|.. ...+++| .+++++|+
T Consensus       852 ~Ls~n~i~~iP~-si~~l~~L~~L~L~~C~~L~~l~~~-~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        852 NLSRTGIEEVPW-WIEKFSNLSFLDMNGCNNLQRVSLN-ISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ECCCCCCccChH-HHhcCCCCCEEECCCCCCcCccCcc-cccccCCCeeecCCCc
Confidence            888888776654 4677778888888774 67776654 3456677 77777665

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=8.3e-22  Score=220.49  Aligned_cols=224  Identities=28%  Similarity=0.295  Sum_probs=106.8

Q ss_pred             CCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEE
Q psy16110        423 KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLC  502 (719)
Q Consensus       423 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~  502 (719)
                      ++|++|++++|+++.++.    ..++|+.|++++| .+..+|..    ..+|+.|++++|+++.++.    ..++|+.|+
T Consensus       242 ~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N-~L~~Lp~l----p~~L~~L~Ls~N~Lt~LP~----~p~~L~~Ld  308 (788)
T PRK15387        242 PELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLPAL----PSGLCKLWIFGNQLTSLPV----LPPGLQELS  308 (788)
T ss_pred             CCCcEEEecCCccCcccC----cccccceeeccCC-chhhhhhc----hhhcCEEECcCCccccccc----cccccceeE
Confidence            344444444444444421    1234444444444 33333321    1334444555554444432    123455555


Q ss_pred             ccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcC
Q psy16110        503 LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN  582 (719)
Q Consensus       503 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~  582 (719)
                      +++|+++.++..    ..+|+.|++++|+++.+. .   ...+|+.|+|++|+++.++..         .++|+.|++++
T Consensus       309 LS~N~L~~Lp~l----p~~L~~L~Ls~N~L~~LP-~---lp~~Lq~LdLS~N~Ls~LP~l---------p~~L~~L~Ls~  371 (788)
T PRK15387        309 VSDNQLASLPAL----PSELCKLWAYNNQLTSLP-T---LPSGLQELSVSDNQLASLPTL---------PSELYKLWAYN  371 (788)
T ss_pred             CCCCccccCCCC----cccccccccccCcccccc-c---cccccceEecCCCccCCCCCC---------Ccccceehhhc
Confidence            555555544321    123445555555554432 1   113455555555555544321         13455555555


Q ss_pred             CCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110        583 NELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE  662 (719)
Q Consensus       583 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~  662 (719)
                      |+++.+ |..   ..+|+.|++++|+++.+|..    .++|+.|++++|++++++. .   ..+|+.|++++|+++.++.
T Consensus       372 N~L~~L-P~l---~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~-l---~~~L~~L~Ls~NqLt~LP~  439 (788)
T PRK15387        372 NRLTSL-PAL---PSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPM-L---PSGLLSLSVYRNQLTRLPE  439 (788)
T ss_pred             cccccC-ccc---ccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCc-c---hhhhhhhhhccCcccccCh
Confidence            555543 221   23456666666666655532    2456666666666665543 1   2345666666666665543


Q ss_pred             ccCCCCCCCcEEECCCCcCCCcChHhh
Q psy16110        663 TCFFNSSQLQIINLSFNRLEKLPERLF  689 (719)
Q Consensus       663 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~  689 (719)
                       .+.++++|+.|+|++|+|+......+
T Consensus       440 -sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        440 -SLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             -HHhhccCCCeEECCCCCCCchHHHHH
Confidence             35556666666666666664433333

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.3e-21  Score=218.98  Aligned_cols=262  Identities=26%  Similarity=0.285  Sum_probs=139.1

Q ss_pred             CCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEcc
Q psy16110        219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILR  298 (719)
Q Consensus       219 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  298 (719)
                      .-..|+++++.++.+|+.. .  .+|+.|++++|+++.+|.    .+++|++|++++|+++.++.    ..++|+.|+++
T Consensus       202 ~~~~LdLs~~~LtsLP~~l-~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCL-P--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCCcCCcch-h--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccC----cccccceeecc
Confidence            3445566666666555432 1  255666666666666554    24556666666666655532    13455666666


Q ss_pred             CCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCC
Q psy16110        299 GNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQ  378 (719)
Q Consensus       299 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~  378 (719)
                      +|.++.++.    ...+|+.|++++|+++.++.         ..++|+.|++++|+++.++..               ..
T Consensus       271 ~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~LP~---------~p~~L~~LdLS~N~L~~Lp~l---------------p~  322 (788)
T PRK15387        271 SNPLTHLPA----LPSGLCKLWIFGNQLTSLPV---------LPPGLQELSVSDNQLASLPAL---------------PS  322 (788)
T ss_pred             CCchhhhhh----chhhcCEEECcCCccccccc---------cccccceeECCCCccccCCCC---------------cc
Confidence            666554432    12345556666666655543         124566666666655543310               12


Q ss_pred             CccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCC
Q psy16110        379 KLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA  458 (719)
Q Consensus       379 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  458 (719)
                      +|+.|++++|.++.+|.  .+.+|+.|++++|+++.++..   .++|+.|++++|.+..++.    ...+|+.|++++| 
T Consensus       323 ~L~~L~Ls~N~L~~LP~--lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N-  392 (788)
T PRK15387        323 ELCKLWAYNNQLTSLPT--LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGN-  392 (788)
T ss_pred             cccccccccCccccccc--cccccceEecCCCccCCCCCC---CcccceehhhccccccCcc----cccccceEEecCC-
Confidence            35555566665555543  224566666666665555431   2445556666666655432    1234566666666 


Q ss_pred             CCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCC
Q psy16110        459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVG  538 (719)
Q Consensus       459 ~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~  538 (719)
                      .++.+|..    .++|+.|++++|.++.+|..    ..+|+.|++++|+++.+|.. +..+++|+.|++++|++++..+.
T Consensus       393 ~Lt~LP~l----~s~L~~LdLS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        393 RLTSLPVL----PSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             cccCCCCc----ccCCCEEEccCCcCCCCCcc----hhhhhhhhhccCcccccChH-HhhccCCCeEECCCCCCCchHHH
Confidence            45555532    24566666666666655431    23455666666666666543 45566666666666666554333

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=1.3e-19  Score=204.35  Aligned_cols=248  Identities=24%  Similarity=0.347  Sum_probs=155.2

Q ss_pred             ccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEc
Q psy16110        400 DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL  479 (719)
Q Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~l  479 (719)
                      .+...|+++++.++.+|..+  .+.|+.|++++|+++.++...+   ++|+.|++++| .+..+|...   ..+|+.|++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l---~~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACI--PEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATL---PDTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhh---hccccEEEC
Confidence            34667888888888776543  3568888888888887765432   46788888877 666776532   246777777


Q ss_pred             CCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcc
Q psy16110        480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTF  559 (719)
Q Consensus       480 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  559 (719)
                      ++|.+..++...   ..+|+.|++++|+++.+|...   .++|++|++++|+++.+. ..+  .++|+.|++++|.++.+
T Consensus       249 s~N~L~~LP~~l---~s~L~~L~Ls~N~L~~LP~~l---~~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        249 SINRITELPERL---PSALQSLDLFHNKISCLPENL---PEELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTAL  319 (754)
T ss_pred             cCCccCcCChhH---hCCCCEEECcCCccCcccccc---CCCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccccC
Confidence            777777766532   246777777777777666532   246777777777776542 222  13567777777777655


Q ss_pred             cCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcc
Q psy16110        560 KGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDY  639 (719)
Q Consensus       560 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  639 (719)
                      +....        ++|+.|++++|.++++ |..+  .++|+.|++++|+++.+|...   .++|++|++++|+++.+++.
T Consensus       320 P~~l~--------~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~N~Lt~LP~~  385 (754)
T PRK15370        320 PETLP--------PGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQITVLPETL---PPTITTLDVSRNALTNLPEN  385 (754)
T ss_pred             Ccccc--------ccceeccccCCccccC-Chhh--cCcccEEECCCCCCCcCChhh---cCCcCEEECCCCcCCCCCHh
Confidence            43221        4577777777776664 4333  256777777777776665432   24667777777777666542


Q ss_pred             cCCCCCCCCEEeCCCCcCCCCCc---ccCCCCCCCcEEECCCCcCC
Q psy16110        640 DYGYLPRLRKLNLNNNNIDAISE---TCFFNSSQLQIINLSFNRLE  682 (719)
Q Consensus       640 ~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~  682 (719)
                       +.  ..|+.|++++|+++.++.   ..+..++.+..|++.+|+++
T Consensus       386 -l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        386 -LP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             -HH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence             21  356667777777665542   22333466667777777665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=3.5e-19  Score=200.92  Aligned_cols=249  Identities=22%  Similarity=0.352  Sum_probs=193.6

Q ss_pred             CCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCC
Q psy16110        378 QKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN  457 (719)
Q Consensus       378 ~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  457 (719)
                      .+...|+++++.++.+|.. .++.++.|++++|.++.++....  ++|+.|++++|++++++.. +  .++|+.|++++|
T Consensus       178 ~~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~-l--~~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPAT-L--PDTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChh-h--hccccEEECcCC
Confidence            3578899999999988752 35689999999999998876543  5899999999999887643 2  247899999999


Q ss_pred             CCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccC
Q psy16110        458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRV  537 (719)
Q Consensus       458 ~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~  537 (719)
                       .+..+|...   ..+|+.|++++|+++.++...   ..+|+.|++++|+++.++...   .++|+.|++++|+++.+..
T Consensus       252 -~L~~LP~~l---~s~L~~L~Ls~N~L~~LP~~l---~~sL~~L~Ls~N~Lt~LP~~l---p~sL~~L~Ls~N~Lt~LP~  321 (754)
T PRK15370        252 -RITELPERL---PSALQSLDLFHNKISCLPENL---PEELRYLSVYDNSIRTLPAHL---PSGITHLNVQSNSLTALPE  321 (754)
T ss_pred             -ccCcCChhH---hCCCCEEECcCCccCcccccc---CCCCcEEECCCCccccCcccc---hhhHHHHHhcCCccccCCc
Confidence             777888653   257999999999998877532   258999999999999887542   2578999999999887633


Q ss_pred             CccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhh
Q psy16110        538 GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI  617 (719)
Q Consensus       538 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  617 (719)
                       .+  .++|+.|++++|.++.++...        .++|+.|++++|+++.+ |..+  .++|++|++++|+++.+|+...
T Consensus       322 -~l--~~sL~~L~Ls~N~Lt~LP~~l--------~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~LP~~l~  387 (754)
T PRK15370        322 -TL--PPGLKTLEAGENALTSLPASL--------PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNLPENLP  387 (754)
T ss_pred             -cc--cccceeccccCCccccCChhh--------cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCCCHhHH
Confidence             22  368999999999998876433        26899999999998865 5444  3689999999999999887642


Q ss_pred             cCCCCCCEEECCCCCCcccCc---ccCCCCCCCCEEeCCCCcCCC
Q psy16110        618 LGLSYLQEIDLSNNQLKTIDD---YDYGYLPRLRKLNLNNNNIDA  659 (719)
Q Consensus       618 ~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~Ls~N~l~~  659 (719)
                         .+|+.|++++|++..++.   ..+..++.+..|++.+|+++.
T Consensus       388 ---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        388 ---AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             ---HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence               368899999999987654   223445788999999999874

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=6.5e-18  Score=177.32  Aligned_cols=213  Identities=22%  Similarity=0.206  Sum_probs=131.5

Q ss_pred             hhcCCCCccEEEccCCcCCCCChhhhcCCCC---CCEEeCCCCcccc----ccCCccCCC-CCCCEEEccCCcCCcccCC
Q psy16110        491 QFDELLNLKYLCLAHNHLTEIPEMMFKNLLN---LTYLDLSNNNIVN----LRVGSLYGL-PSMKRLDLSFNKLTTFKGD  562 (719)
Q Consensus       491 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~Ls~n~i~~----~~~~~l~~l-~~L~~L~L~~n~l~~~~~~  562 (719)
                      .+..+++|+.|++++|.+.......+..+..   |++|++++|++++    .....+..+ ++|+.|++++|.++.....
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            4455666777777776665433333333333   7777777776653    112234445 6777777777776631111


Q ss_pred             cCCCCCCCCCCCCcEEECcCCCCCCc----CcCcccCCCCccEEEcCCCCCCCcCh----hhhcCCCCCCEEECCCCCCc
Q psy16110        563 YFNTKSKPNTSSLEELNLNNNELTYL----FPSSFTIHSKLKTLKLAFNKFNYFPK----ELILGLSYLQEIDLSNNQLK  634 (719)
Q Consensus       563 ~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~  634 (719)
                      .+. ..+..++.|++|++++|.+++.    ++..+..+++|++|++++|.++....    ..+..+++|++|++++|.++
T Consensus       156 ~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         156 ALA-KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHH-HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            100 0112346788888888877742    22334556788888888888775432    23566788999999998887


Q ss_pred             ccCcccC-----CCCCCCCEEeCCCCcCCCC----CcccCCCCCCCcEEECCCCcCCCcChH----hhcCc-ccc-EEec
Q psy16110        635 TIDDYDY-----GYLPRLRKLNLNNNNIDAI----SETCFFNSSQLQIINLSFNRLEKLPER----LFNTF-LYT-NYDM  699 (719)
Q Consensus       635 ~~~~~~l-----~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~i~~~----~~~~l-~~L-~L~l  699 (719)
                      +.....+     ...+.|++|++++|.++..    ....+..+++|+++|+++|+++.-+..    ++... +.| ++++
T Consensus       235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~  314 (319)
T cd00116         235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV  314 (319)
T ss_pred             hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence            5222111     1247899999999988732    123355568999999999999855333    34444 678 9999


Q ss_pred             CCCce
Q psy16110        700 APNLV  704 (719)
Q Consensus       700 ~~N~l  704 (719)
                      .+||+
T Consensus       315 ~~~~~  319 (319)
T cd00116         315 KDDSF  319 (319)
T ss_pred             CCCCC
Confidence            99885

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.65  E-value=1.7e-17  Score=174.11  Aligned_cols=161  Identities=19%  Similarity=0.147  Sum_probs=84.4

Q ss_pred             CCCCEEeCCCCccccc----cCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcC----cC
Q psy16110        520 LNLTYLDLSNNNIVNL----RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLF----PS  591 (719)
Q Consensus       520 ~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~  591 (719)
                      ++|++|++++|.+++.    ....+..+++|++|++++|.+++.....+. ..+..+++|++|++++|.+++..    ..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  215 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA-EGLKANCNLEVLDLNNNGLTDEGASALAE  215 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH-HHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence            5555555555555421    122344445566666666555421111000 00011246666666666655332    23


Q ss_pred             cccCCCCccEEEcCCCCCCCcChhhh-----cCCCCCCEEECCCCCCccc----CcccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110        592 SFTIHSKLKTLKLAFNKFNYFPKELI-----LGLSYLQEIDLSNNQLKTI----DDYDYGYLPRLRKLNLNNNNIDAISE  662 (719)
Q Consensus       592 ~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~~  662 (719)
                      .+..+++|++|++++|.++......+     ...+.|++|++++|.++..    ....+..+++|+++++++|.++....
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~  295 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA  295 (319)
T ss_pred             HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence            34556677777777776664222211     1236778888888777521    11234555778888888888775422


Q ss_pred             ----ccCCCC-CCCcEEECCCCcC
Q psy16110        663 ----TCFFNS-SQLQIINLSFNRL  681 (719)
Q Consensus       663 ----~~~~~l-~~L~~L~Ls~N~l  681 (719)
                          ..+... +.|+++++.+|++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         296 QLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHhhcCCchhhcccCCCCC
Confidence                223333 6778888877754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617|consensus

Probab=99.49  E-value=5.2e-16  Score=136.22  Aligned_cols=160  Identities=33%  Similarity=0.526  Sum_probs=121.0

Q ss_pred             CCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCC
Q psy16110        494 ELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTS  573 (719)
Q Consensus       494 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~  573 (719)
                      .+..++.|.+++|+++.+++. +..+.+|+.|++++|+|+.. |..++.+++|+.|++.-|++...+ ..|.     .++
T Consensus        31 ~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~~lp-rgfg-----s~p  102 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLNILP-RGFG-----SFP  102 (264)
T ss_pred             chhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhc-ChhhhhchhhhheecchhhhhcCc-cccC-----CCc
Confidence            355667777777877777765 46677788888888887776 556777888888888877776444 3333     347


Q ss_pred             CCcEEECcCCCCCC-cCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeC
Q psy16110        574 SLEELNLNNNELTY-LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNL  652 (719)
Q Consensus       574 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  652 (719)
                      .|++|||.+|.+.+ ..|..|..++.|+.|+++.|.+..+|++ ++.+++|+.|.++.|.+..++. .++.+.+|++|.+
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lpk-eig~lt~lrelhi  180 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLPK-EIGDLTRLRELHI  180 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhCcH-HHHHHHHHHHHhc
Confidence            88888888877753 4677777788888888888888888876 6888888888888888887766 5778888888888


Q ss_pred             CCCcCCCCCcc
Q psy16110        653 NNNNIDAISET  663 (719)
Q Consensus       653 s~N~l~~~~~~  663 (719)
                      .+|+++-++|+
T Consensus       181 qgnrl~vlppe  191 (264)
T KOG0617|consen  181 QGNRLTVLPPE  191 (264)
T ss_pred             ccceeeecChh
Confidence            88888877775

>KOG0617|consensus

Probab=99.48  E-value=8.6e-16  Score=134.85  Aligned_cols=159  Identities=28%  Similarity=0.390  Sum_probs=89.6

Q ss_pred             CCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEE
Q psy16110        216 GLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERI  295 (719)
Q Consensus       216 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  295 (719)
                      ++.++..|.||+|+++.+++. ++.+.+|+.|++++|+++++|. .++.+++|+.|+++-|++..+ |..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl~~l-prgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRLNIL-PRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchhhhhcC-ccccCCCchhhhh
Confidence            345555566666666666554 4556666666666666666665 466666666666666665444 3456666666666


Q ss_pred             EccCCCCc-ccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCccccccccc
Q psy16110        296 ILRGNRLT-TIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFF  374 (719)
Q Consensus       296 ~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l  374 (719)
                      |+++|.+. ...|+.|-.++.|+.|+++.|.+.-+++      ..+++++|+.|.+..|.+-+            +|..+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~------dvg~lt~lqil~lrdndll~------------lpkei  169 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP------DVGKLTNLQILSLRDNDLLS------------LPKEI  169 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcccCCh------hhhhhcceeEEeeccCchhh------------CcHHH
Confidence            66666554 2234555556666666666666655555      24555566666655555422            23334


Q ss_pred             ccCCCccEEECCCCCCcCcCC
Q psy16110        375 QDFQKLKSLDLNGNFLINLES  395 (719)
Q Consensus       375 ~~~~~L~~L~L~~n~l~~~~~  395 (719)
                      +.+..|++|.+.+|+++.+|+
T Consensus       170 g~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  170 GDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             HHHHHHHHHhcccceeeecCh
Confidence            445555555555555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.27  E-value=1.3e-12  Score=120.87  Aligned_cols=129  Identities=26%  Similarity=0.375  Sum_probs=34.4

Q ss_pred             CCCCCCEEECcCCCCcccCcCccC-CCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCE
Q psy16110        216 GLVNLRILDLSDNQIKAIEEGILK-GCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLER  294 (719)
Q Consensus       216 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  294 (719)
                      +..++++|+|++|+|+.+..  ++ .+.+|+.|++++|.|+++..  +..+++|++|++++|.|+.+.......+++|++
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             -------------------S----TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccccc--hhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            33344555555555544432  22 24455555555555555442  444555555555555555543211123555555


Q ss_pred             EEccCCCCcccCc-ccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeC
Q psy16110        295 IILRGNRLTTIEG-GAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNL  350 (719)
Q Consensus       295 L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L  350 (719)
                      |++++|+|..+.. ..+..+++|++|++.+|+++....  .....+..+|+|+.||-
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~--YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN--YRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT--HHHHHHHH-TT-SEETT
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh--HHHHHHHHcChhheeCC
Confidence            5555555554331 234455566666666666554321  11113455666666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.24  E-value=2.7e-12  Score=118.75  Aligned_cols=85  Identities=33%  Similarity=0.422  Sum_probs=23.3

Q ss_pred             CCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCC-CcccCCCccCEE
Q psy16110        217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKA-DSFLSQRWLERI  295 (719)
Q Consensus       217 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L  295 (719)
                      +.+|+.|+|++|.|+.+..  +..+++|++|++++|.|+++++.....+++|++|++++|+|..+.. ..++.+++|+.|
T Consensus        41 l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             -TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             hcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            4445555555555544432  4444555555555555554432111234455555555555444332 233444555555


Q ss_pred             EccCCCCc
Q psy16110        296 ILRGNRLT  303 (719)
Q Consensus       296 ~Ls~n~i~  303 (719)
                      ++.+|+++
T Consensus       119 ~L~~NPv~  126 (175)
T PF14580_consen  119 SLEGNPVC  126 (175)
T ss_dssp             E-TT-GGG
T ss_pred             eccCCccc
Confidence            55555444

>KOG1909|consensus

Probab=99.24  E-value=8.4e-13  Score=129.54  Aligned_cols=189  Identities=19%  Similarity=0.194  Sum_probs=113.3

Q ss_pred             hcCCCCCCEEeCCCCccccccCC----ccCCCCCCCEEEccCCcCCcccCCcCCC--------CCCCCCCCCcEEECcCC
Q psy16110        516 FKNLLNLTYLDLSNNNIVNLRVG----SLYGLPSMKRLDLSFNKLTTFKGDYFNT--------KSKPNTSSLEELNLNNN  583 (719)
Q Consensus       516 ~~~l~~L~~L~Ls~n~i~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~--------~~~~~l~~L~~L~Ls~n  583 (719)
                      +..++.|++||||+|.+....+.    .+.++..|++|+|.+|.+....+..+..        .....-+.|+++...+|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            34455666666666655433222    2234556666666666555433322110        01122366777777777


Q ss_pred             CCCCcC----cCcccCCCCccEEEcCCCCCCC----cChhhhcCCCCCCEEECCCCCCccc----CcccCCCCCCCCEEe
Q psy16110        584 ELTYLF----PSSFTIHSKLKTLKLAFNKFNY----FPKELILGLSYLQEIDLSNNQLKTI----DDYDYGYLPRLRKLN  651 (719)
Q Consensus       584 ~l~~~~----~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~  651 (719)
                      .+....    ...|...+.|+++.++.|.|..    .....+..+++|++|||++|.++..    ....+..++.|++|+
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            776442    2345566778888888877653    2335567788888888888877632    233466677888888


Q ss_pred             CCCCcCCCCCcccC-----CCCCCCcEEECCCCcCCC----cChHhhcCcccc-EEecCCCce
Q psy16110        652 LNNNNIDAISETCF-----FNSSQLQIINLSFNRLEK----LPERLFNTFLYT-NYDMAPNLV  704 (719)
Q Consensus       652 Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~----i~~~~~~~l~~L-~L~l~~N~l  704 (719)
                      +++|.++.-....|     ...|+|+.|.+.+|.++.    +-.......+.| .|+|++|.+
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            88887776543322     235788888888887762    222233456778 888888887

>KOG1909|consensus

Probab=99.19  E-value=1.8e-12  Score=127.20  Aligned_cols=86  Identities=23%  Similarity=0.272  Sum_probs=36.5

Q ss_pred             CCCCcEEECcCCCCCCc----CcCcccCCCCccEEEcCCCCCCCcChhhh-----cCCCCCCEEECCCCCCcc----cCc
Q psy16110        572 TSSLEELNLNNNELTYL----FPSSFTIHSKLKTLKLAFNKFNYFPKELI-----LGLSYLQEIDLSNNQLKT----IDD  638 (719)
Q Consensus       572 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~----~~~  638 (719)
                      +++|++|||.+|-++..    +...+..|++|++|++++|.+..-...++     ...++|++|.+.+|.|+.    ...
T Consensus       212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la  291 (382)
T KOG1909|consen  212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA  291 (382)
T ss_pred             CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH
Confidence            34444444444444322    12233444555555555554443222211     223455555555555442    111


Q ss_pred             ccCCCCCCCCEEeCCCCcC
Q psy16110        639 YDYGYLPRLRKLNLNNNNI  657 (719)
Q Consensus       639 ~~l~~l~~L~~L~Ls~N~l  657 (719)
                      ..+...+.|+.|+|++|++
T Consensus       292 ~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  292 ACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHhcchhhHHhcCCcccc
Confidence            1222344455555555554

>KOG3207|consensus

Probab=99.18  E-value=3.1e-12  Score=128.91  Aligned_cols=209  Identities=25%  Similarity=0.273  Sum_probs=111.2

Q ss_pred             CCCCccEEEcCCCCCCCCCc-hhhcCCCCccEEEccCCcCCCCCh--hhhcCCCCCCEEeCCCCccccccCC-ccCCCCC
Q psy16110        470 PLKKLEVLDLAATGLKSIPQ-YQFDELLNLKYLCLAHNHLTEIPE--MMFKNLLNLTYLDLSNNNIVNLRVG-SLYGLPS  545 (719)
Q Consensus       470 ~l~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~  545 (719)
                      ++.+|+++.+.++.+...+. .....+++++.|+|++|-+..+..  .....+++|+.|+++.|++...... .-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            45677777777776655543 334557777777777776664432  2345667777777777765432111 1124556


Q ss_pred             CCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcCh-hhhcCCCCCC
Q psy16110        546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPK-ELILGLSYLQ  624 (719)
Q Consensus       546 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~  624 (719)
                      |+.|.|+.|.++.-.....    ...+|+|+.|+|..|..-........-+..|++|+|++|++...+. ...+.++.|+
T Consensus       199 lK~L~l~~CGls~k~V~~~----~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWI----LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hheEEeccCCCCHHHHHHH----HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            6777777766652111110    0124666666666664222222333345566666666666555441 1234556666


Q ss_pred             EEECCCCCCcccCcccC------CCCCCCCEEeCCCCcCCCCCc-ccCCCCCCCcEEECCCCcCC
Q psy16110        625 EIDLSNNQLKTIDDYDY------GYLPRLRKLNLNNNNIDAISE-TCFFNSSQLQIINLSFNRLE  682 (719)
Q Consensus       625 ~L~Ls~n~l~~~~~~~l------~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~  682 (719)
                      .|+++.+.+..+.....      ..+++|++|++..|++.+... ..+..+++|+.|.+..|.++
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            66666666654432222      334566666666666654321 11233455555555555554

>KOG0532|consensus

Probab=99.15  E-value=2.1e-12  Score=134.03  Aligned_cols=187  Identities=31%  Similarity=0.465  Sum_probs=96.4

Q ss_pred             CCCCCCCCCCC-CCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccC
Q psy16110        459 HLSSLPVGGFD-PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRV  537 (719)
Q Consensus       459 ~l~~l~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~  537 (719)
                      .+.+.|...+. .+..-...|++.|++..++. .+..+..|+.+.++.|.+..++.. ..++..|+++|++.|++... |
T Consensus        61 rlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~-~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~l-p  137 (722)
T KOG0532|consen   61 RLKEFPRGAASYDLTDTVFADLSRNRFSELPE-EACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHL-P  137 (722)
T ss_pred             hhhcCCCccccccccchhhhhccccccccCch-HHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcC-C
Confidence            44555543332 23333445666666666554 234445566666666666555543 45555666666666665544 2


Q ss_pred             CccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhh
Q psy16110        538 GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI  617 (719)
Q Consensus       538 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  617 (719)
                      ..+..++ |+.|.+++|+++.++.++-      ....|..||.+.|++... |..+..+.+|+.|++..|++..+|++. 
T Consensus       138 ~~lC~lp-Lkvli~sNNkl~~lp~~ig------~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~lp~El-  208 (722)
T KOG0532|consen  138 DGLCDLP-LKVLIVSNNKLTSLPEEIG------LLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLEDLPEEL-  208 (722)
T ss_pred             hhhhcCc-ceeEEEecCccccCCcccc------cchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhhCCHHH-
Confidence            2233332 5555556665555544332      124555555555555554 334555555555555555555555542 


Q ss_pred             cCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCC
Q psy16110        618 LGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDA  659 (719)
Q Consensus       618 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  659 (719)
                      .. =.|..||+|.|++..++. .|.+|+.|++|-|.+|.+..
T Consensus       209 ~~-LpLi~lDfScNkis~iPv-~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  209 CS-LPLIRLDFSCNKISYLPV-DFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hC-CceeeeecccCceeecch-hhhhhhhheeeeeccCCCCC
Confidence            22 235555555555555544 45555555555555555544

>KOG3207|consensus

Probab=99.14  E-value=9.3e-12  Score=125.55  Aligned_cols=135  Identities=23%  Similarity=0.273  Sum_probs=63.5

Q ss_pred             hccCCEEEccCCcccc--cccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccE
Q psy16110        399 EDTLDNLNVRDNQITT--LSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEV  476 (719)
Q Consensus       399 ~~~L~~L~l~~n~l~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~  476 (719)
                      .++|+.|.+++|.++.  +......+|+|+.|++.+|....+......-+..|+.|+|++|..+..-.......++.|+.
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            3455555555555541  11112236666666666665333333333445566666666663332221222344566666


Q ss_pred             EEcCCCCCCCCCchhh------cCCCCccEEEccCCcCCCCCh-hhhcCCCCCCEEeCCCCccc
Q psy16110        477 LDLAATGLKSIPQYQF------DELLNLKYLCLAHNHLTEIPE-MMFKNLLNLTYLDLSNNNIV  533 (719)
Q Consensus       477 L~ls~n~l~~~~~~~~------~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~  533 (719)
                      |+++.+++.++.....      ..+++|++|++..|++..++. ..+..+++|+.|.+..|.++
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            6666666555432111      234555555555555543332 11223344444444444443

>KOG1259|consensus

Probab=99.13  E-value=8.4e-12  Score=119.59  Aligned_cols=203  Identities=20%  Similarity=0.200  Sum_probs=120.3

Q ss_pred             CCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCC-ccccccCCccCCCCCCCE
Q psy16110        470 PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN-NIVNLRVGSLYGLPSMKR  548 (719)
Q Consensus       470 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~  548 (719)
                      .+.+|+.+.++.|.-..|.. ....-+.|+++......++..+.  +-....+....-+.- -.++........+..|++
T Consensus       212 ~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~~~~--l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte  288 (490)
T KOG1259|consen  212 AFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQDVPS--LLPETILADPSGSEPSTSNGSALVSADTWQELTE  288 (490)
T ss_pred             Hhhhhheeeeeccchhheec-eeecCchhheeeeeccccccccc--ccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence            35677777777775444432 11234667777776655443322  111112211111111 011111122334567778


Q ss_pred             EEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEEC
Q psy16110        549 LDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDL  628 (719)
Q Consensus       549 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  628 (719)
                      ++|++|.++.+....-      -.+.++.|++|+|.+..+.  .+..+++|+.|+|++|.++.+..+ -..+-+.+.|.|
T Consensus       289 lDLS~N~I~~iDESvK------L~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gw-h~KLGNIKtL~L  359 (490)
T KOG1259|consen  289 LDLSGNLITQIDESVK------LAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGW-HLKLGNIKTLKL  359 (490)
T ss_pred             ccccccchhhhhhhhh------hccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhh-HhhhcCEeeeeh
Confidence            8888887776654321      1377888888888877763  367777888888888877765432 234567777788


Q ss_pred             CCCCCcccCcccCCCCCCCCEEeCCCCcCCCCC-cccCCCCCCCcEEECCCCcCCCcCh
Q psy16110        629 SNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS-ETCFFNSSQLQIINLSFNRLEKLPE  686 (719)
Q Consensus       629 s~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~  686 (719)
                      ++|.+.++..  +.++-+|..||+++|+|..+. ...++++|-|+.+.|.+|+++.+++
T Consensus       360 a~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  360 AQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            8887776653  566677777888888777653 2356777778888888887776654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=1.3e-10  Score=125.67  Aligned_cols=198  Identities=36%  Similarity=0.475  Sum_probs=132.3

Q ss_pred             EEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCC-CccEEEccCCcCCCCChhhhcCCCCCCEEeCCC
Q psy16110        451 HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL-NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN  529 (719)
Q Consensus       451 ~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  529 (719)
                      .+.+..+........  ....+.++.+++.+|.++.+++. ..... +|+.|++++|.+..++. ....+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~-~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNISE--LLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCchh--hhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhh-hhhccccccccccCC
Confidence            566666632132222  23446788888888888887763 23342 78888888888887753 256778888888888


Q ss_pred             CccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCC
Q psy16110        530 NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKF  609 (719)
Q Consensus       530 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  609 (719)
                      |++..+.+ .....+.|+.|++++|++..++...-      ....|++|++++|.+... +..+..+.++..+.+.+|++
T Consensus       173 N~l~~l~~-~~~~~~~L~~L~ls~N~i~~l~~~~~------~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         173 NDLSDLPK-LLSNLSNLNNLDLSGNKISDLPPEIE------LLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             chhhhhhh-hhhhhhhhhheeccCCccccCchhhh------hhhhhhhhhhcCCcceec-chhhhhcccccccccCCcee
Confidence            88877633 33367778888888888877765421      124577888887754333 44566777777777777777


Q ss_pred             CCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcc
Q psy16110        610 NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISET  663 (719)
Q Consensus       610 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~  663 (719)
                      ..++. .+..+++++.|++++|.++.+..  ++.+.+++.|++++|.+..+++.
T Consensus       245 ~~~~~-~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         245 EDLPE-SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             eeccc-hhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            66432 35667777777777777777765  66777777777777777766554

>KOG1259|consensus

Probab=99.08  E-value=1.2e-11  Score=118.46  Aligned_cols=127  Identities=24%  Similarity=0.358  Sum_probs=68.7

Q ss_pred             cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110        165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL  244 (719)
Q Consensus       165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  244 (719)
                      -++.+|||+|.|+.|.+++  ...+.++.|++|+|.|..       .+.+..+++|+.||||+|.+..+.. .-.++-+.
T Consensus       285 ~LtelDLS~N~I~~iDESv--KL~Pkir~L~lS~N~i~~-------v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNI  354 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESV--KLAPKLRRLILSQNRIRT-------VQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNI  354 (490)
T ss_pred             hhhhccccccchhhhhhhh--hhccceeEEeccccceee-------ehhhhhcccceEeecccchhHhhhh-hHhhhcCE
Confidence            3777888888877777665  456677777777776653       1235566666666666666655433 12334455


Q ss_pred             cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCC-CcccCCCccCEEEccCCCCc
Q psy16110        245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKA-DSFLSQRWLERIILRGNRLT  303 (719)
Q Consensus       245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~  303 (719)
                      ++|.|++|.+..+..  +.++.+|..||+++|+|..+.. ..+++++-|+++.+.+|.+.
T Consensus       355 KtL~La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  355 KTLKLAQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eeeehhhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            555555555544442  4444444444444444443322 23344444444444444443

>KOG0531|consensus

Probab=99.07  E-value=2.3e-11  Score=131.67  Aligned_cols=211  Identities=31%  Similarity=0.459  Sum_probs=101.7

Q ss_pred             ccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCccc-ccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110        166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSE-FHGLVNLRILDLSDNQIKAIEEGILKGCDNL  244 (719)
Q Consensus       166 L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  244 (719)
                      ++.+++..|.|.++...+  ..+++|++|++.+|.|...       .. +..+++|++|++++|.|+.+..  +..+..|
T Consensus        74 l~~l~l~~n~i~~~~~~l--~~~~~l~~l~l~~n~i~~i-------~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L  142 (414)
T KOG0531|consen   74 LKELNLRQNLIAKILNHL--SKLKSLEALDLYDNKIEKI-------ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLL  142 (414)
T ss_pred             HHhhccchhhhhhhhccc--ccccceeeeeccccchhhc-------ccchhhhhcchheeccccccccccc--hhhccch
Confidence            455555555555533222  2345556666666655541       12 4445566666666665555543  3445555


Q ss_pred             cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCC-CcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCC
Q psy16110        245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKA-DSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGY  323 (719)
Q Consensus       245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  323 (719)
                      +.|++++|.|+.+..  +..++.|+.+++++|.+..+.. . ...+.+++.+++.+|.+..+..  +..+..+..+++..
T Consensus       143 ~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~  217 (414)
T KOG0531|consen  143 KELNLSGNLISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLD  217 (414)
T ss_pred             hhheeccCcchhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhccc
Confidence            566666665555553  4445555555665555555543 1 2445555555555555554432  23333344445555


Q ss_pred             CCCCCcCCCccccccccCCCC--CCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhcc
Q psy16110        324 NRLNKLNSDTFQGGAFNGLAK--IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDT  401 (719)
Q Consensus       324 n~l~~~~~~~~~~~~l~~l~~--L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~  401 (719)
                      |.++.+..       +.....  |+.+++++|++..+.            ..+..+..+..+++.+|.+...........
T Consensus       218 n~i~~~~~-------l~~~~~~~L~~l~l~~n~i~~~~------------~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~  278 (414)
T KOG0531|consen  218 NKISKLEG-------LNELVMLHLRELYLSGNRISRSP------------EGLENLKNLPVLDLSSNRISNLEGLERLPK  278 (414)
T ss_pred             ccceeccC-------cccchhHHHHHHhcccCcccccc------------ccccccccccccchhhccccccccccccch
Confidence            55544432       111222  555555555554331            112334455555555555554444333334


Q ss_pred             CCEEEccCCc
Q psy16110        402 LDNLNVRDNQ  411 (719)
Q Consensus       402 L~~L~l~~n~  411 (719)
                      +..+....+.
T Consensus       279 ~~~~~~~~~~  288 (414)
T KOG0531|consen  279 LSELWLNDNK  288 (414)
T ss_pred             HHHhccCcch
Confidence            4444444443

>KOG0532|consensus

Probab=99.06  E-value=7.5e-12  Score=130.00  Aligned_cols=191  Identities=23%  Similarity=0.254  Sum_probs=136.7

Q ss_pred             cccccCCcCccccccCCC-CcccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEE
Q psy16110        146 QRWVGHQILPMQIFSSSD-IPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILD  224 (719)
Q Consensus       146 ~~~~~~~~lp~~~~~~~~-~~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~  224 (719)
                      +.+..+++.|...+. ++ ......||+.|++..+|..+  ..+..|+.+.|..|.+..      -++++.++..|.+||
T Consensus        57 Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrNR~~elp~~~--~~f~~Le~liLy~n~~r~------ip~~i~~L~~lt~l~  127 (722)
T KOG0532|consen   57 LSGRRLKEFPRGAAS-YDLTDTVFADLSRNRFSELPEEA--CAFVSLESLILYHNCIRT------IPEAICNLEALTFLD  127 (722)
T ss_pred             cccchhhcCCCcccc-ccccchhhhhccccccccCchHH--HHHHHHHHHHHHhcccee------cchhhhhhhHHHHhh
Confidence            344445566655544 22 23567888888888888766  345678888888887763      235778888888888


Q ss_pred             CcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcc
Q psy16110        225 LSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTT  304 (719)
Q Consensus       225 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~  304 (719)
                      |+.|+++.++... .. --|+.|-+++|+++.+|+ .++...+|..||.+.|.+..++ ..+.++.+|+.|.+..|++..
T Consensus       128 ls~NqlS~lp~~l-C~-lpLkvli~sNNkl~~lp~-~ig~~~tl~~ld~s~nei~slp-sql~~l~slr~l~vrRn~l~~  203 (722)
T KOG0532|consen  128 LSSNQLSHLPDGL-CD-LPLKVLIVSNNKLTSLPE-EIGLLPTLAHLDVSKNEIQSLP-SQLGYLTSLRDLNVRRNHLED  203 (722)
T ss_pred             hccchhhcCChhh-hc-CcceeEEEecCccccCCc-ccccchhHHHhhhhhhhhhhch-HHhhhHHHHHHHHHhhhhhhh
Confidence            8888888877653 22 347888888888888887 4677788888888888887774 446777888888888888777


Q ss_pred             cCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCc
Q psy16110        305 IEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNK  357 (719)
Q Consensus       305 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~  357 (719)
                      .+++ +. .-.|..||++.|++..++.      .|.+++.|++|-|.+|.++.
T Consensus       204 lp~E-l~-~LpLi~lDfScNkis~iPv------~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  204 LPEE-LC-SLPLIRLDFSCNKISYLPV------DFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             CCHH-Hh-CCceeeeecccCceeecch------hhhhhhhheeeeeccCCCCC
Confidence            7653 33 3357778888888888776      57778888888888887754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=1.8e-10  Score=124.42  Aligned_cols=200  Identities=36%  Similarity=0.482  Sum_probs=153.0

Q ss_pred             cEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCC-CCCEEeCCCCccccccCCccCCCCCCCEEEccC
Q psy16110        475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLL-NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSF  553 (719)
Q Consensus       475 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~  553 (719)
                      ..++...+.+..-.. .....+.++.|++.+|.+++++... .... +|++|++++|++..+ +..+..+++|+.|++++
T Consensus        96 ~~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          96 PSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             ceeeccccccccCch-hhhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhh-hhhhhccccccccccCC
Confidence            357777777633332 2345578999999999999888742 3343 899999999998886 35677889999999999


Q ss_pred             CcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCC
Q psy16110        554 NKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL  633 (719)
Q Consensus       554 n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  633 (719)
                      |++.+++....      ..+.|+.|++++|++..+ |........|++|.+++|.+...+.. +..+..+..+.+.+|++
T Consensus       173 N~l~~l~~~~~------~~~~L~~L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~~~~~~-~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         173 NDLSDLPKLLS------NLSNLNNLDLSGNKISDL-PPEIELLSALEELDLSNNSIIELLSS-LSNLKNLSGLELSNNKL  244 (394)
T ss_pred             chhhhhhhhhh------hhhhhhheeccCCccccC-chhhhhhhhhhhhhhcCCcceecchh-hhhcccccccccCCcee
Confidence            99988776532      247899999999999887 44445666799999999965544433 57788888888988988


Q ss_pred             cccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHh
Q psy16110        634 KTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERL  688 (719)
Q Consensus       634 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~  688 (719)
                      ..++. .++.++.++.|++++|+++.+..  +....+++.||+++|.+..+++..
T Consensus       245 ~~~~~-~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         245 EDLPE-SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             eeccc-hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence            77533 57788889999999999998876  778889999999999888766544

>KOG0531|consensus

Probab=99.01  E-value=4.1e-11  Score=129.68  Aligned_cols=128  Identities=30%  Similarity=0.438  Sum_probs=66.1

Q ss_pred             ccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEc
Q psy16110        400 DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL  479 (719)
Q Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~l  479 (719)
                      ..++.+++..|.+..+......+.+|+.|++.+|.|.++... +..+++|++|++++| .++.+..  +..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-ccccccc--hhhccchhhhee
Confidence            345555555555555333334456666666666666665431 344556666666666 5554443  334444555555


Q ss_pred             CCCCCCCCCchhhcCCCCccEEEccCCcCCCCCh-hhhcCCCCCCEEeCCCCcccc
Q psy16110        480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE-MMFKNLLNLTYLDLSNNNIVN  534 (719)
Q Consensus       480 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~  534 (719)
                      ++|.++.+..  +..+.+|+.+++++|++..+.. . ...+.+++.+++.+|.+..
T Consensus       148 ~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  148 SGNLISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             ccCcchhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            5555555442  3335555555555555554443 1 2334455555555555444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=6.3e-10  Score=84.63  Aligned_cols=59  Identities=39%  Similarity=0.604  Sum_probs=30.8

Q ss_pred             CCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCc
Q psy16110        622 YLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNR  680 (719)
Q Consensus       622 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  680 (719)
                      +|++|++++|+++.+++..|.++++|++|++++|+++.+++..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555555555455555555555555555555555555555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.90  E-value=1e-09  Score=83.51  Aligned_cols=61  Identities=39%  Similarity=0.616  Sum_probs=43.8

Q ss_pred             CCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcC
Q psy16110        597 SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNI  657 (719)
Q Consensus       597 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  657 (719)
                      |+|++|++++|+++.+++.+|.++++|++|++++|+++.+++..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4567777777777777777777777777777777777777776777777777777777764

...

>PLN03150 hypothetical protein; Provisional

Probab=98.82  E-value=1.1e-08  Score=115.76  Aligned_cols=106  Identities=23%  Similarity=0.263  Sum_probs=59.7

Q ss_pred             CcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCC
Q psy16110        575 LEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN  654 (719)
Q Consensus       575 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  654 (719)
                      ++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|++++..+..++++++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55666666666666666666666666666666666543333455566666666666666555454555566666666666


Q ss_pred             CcCCCCCcccCCCC-CCCcEEECCCCc
Q psy16110        655 NNIDAISETCFFNS-SQLQIINLSFNR  680 (719)
Q Consensus       655 N~l~~~~~~~~~~l-~~L~~L~Ls~N~  680 (719)
                      |++++..|..+... .++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            66555544444332 244455555553

>KOG4658|consensus

Probab=98.81  E-value=3.4e-09  Score=122.43  Aligned_cols=127  Identities=21%  Similarity=0.278  Sum_probs=86.3

Q ss_pred             cccEEEcCCCCccccCcccccchhccccEEEcCCCc--CCCcCCCCCCcccccCCCCCCEEECcCCC-CcccCcCccCCC
Q psy16110        165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNL--FGDSLNPIFSTSEFHGLVNLRILDLSDNQ-IKAIEEGILKGC  241 (719)
Q Consensus       165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~--i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l  241 (719)
                      .+++..+-+|.+..++...   .++.|++|-+..|.  +..     +..+.|..++.|++|||++|. +..+| +.++++
T Consensus       524 ~~rr~s~~~~~~~~~~~~~---~~~~L~tLll~~n~~~l~~-----is~~ff~~m~~LrVLDLs~~~~l~~LP-~~I~~L  594 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGSS---ENPKLRTLLLQRNSDWLLE-----ISGEFFRSLPLLRVLDLSGNSSLSKLP-SSIGEL  594 (889)
T ss_pred             heeEEEEeccchhhccCCC---CCCccceEEEeecchhhhh-----cCHHHHhhCcceEEEECCCCCccCcCC-hHHhhh
Confidence            4778888888877777654   34567777777775  222     333457778888888888764 33344 356777


Q ss_pred             ccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCC
Q psy16110        242 DNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNR  301 (719)
Q Consensus       242 ~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  301 (719)
                      -+||+|+++++.+..+|. .+.+++.|.+|++..+.-....+.....+.+|++|.+....
T Consensus       595 i~LryL~L~~t~I~~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  595 VHLRYLDLSDTGISHLPS-GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhhcccccCCCccccch-HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            888888888888887776 57777778888877766544445555567777777775543

>PLN03150 hypothetical protein; Provisional

Probab=98.73  E-value=2e-08  Score=113.69  Aligned_cols=106  Identities=25%  Similarity=0.293  Sum_probs=58.3

Q ss_pred             ccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCC
Q psy16110        599 LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSF  678 (719)
Q Consensus       599 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  678 (719)
                      ++.|+|++|.+.+..+..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|++++.+|..+.++++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            45556666665554444455566666666666666554444555566666666666666655555555566666666666


Q ss_pred             CcCC-CcChHhhcCcccc-EEecCCCce
Q psy16110        679 NRLE-KLPERLFNTFLYT-NYDMAPNLV  704 (719)
Q Consensus       679 N~l~-~i~~~~~~~l~~L-~L~l~~N~l  704 (719)
                      |+++ .+|.........+ .+++.+|+.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcc
Confidence            6555 3443322222344 555666654

>KOG1859|consensus

Probab=98.73  E-value=3.6e-10  Score=120.60  Aligned_cols=176  Identities=24%  Similarity=0.296  Sum_probs=124.3

Q ss_pred             cCCCCCCEEeCCCCccccccCCccCCC-CCCCEEEccCCcCCcc-------cCCcCCCCCCCCCCCCcEEECcCCCCCCc
Q psy16110        517 KNLLNLTYLDLSNNNIVNLRVGSLYGL-PSMKRLDLSFNKLTTF-------KGDYFNTKSKPNTSSLEELNLNNNELTYL  588 (719)
Q Consensus       517 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l-~~L~~L~L~~n~l~~~-------~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  588 (719)
                      -.+.+|+.|.+.++.+... . .+..+ ..|++|... |.+..+       .+++-..   ..+-.|...+.++|.+..+
T Consensus       106 fpF~sLr~LElrg~~L~~~-~-GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns---~~Wn~L~~a~fsyN~L~~m  179 (1096)
T KOG1859|consen  106 FPFRSLRVLELRGCDLSTA-K-GLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS---PVWNKLATASFSYNRLVLM  179 (1096)
T ss_pred             ccccceeeEEecCcchhhh-h-hhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc---hhhhhHhhhhcchhhHHhH
Confidence            3457888888888877652 1 11111 245554332 222211       1111111   1234577888899988776


Q ss_pred             CcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCC
Q psy16110        589 FPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNS  668 (719)
Q Consensus       589 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  668 (719)
                       ..++.-++.|+.|+|++|+++.+.  .+..++.|++|||++|.+..++.....++. |+.|.+++|.++.+-.  +.++
T Consensus       180 -D~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~g--ie~L  253 (1096)
T KOG1859|consen  180 -DESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRG--IENL  253 (1096)
T ss_pred             -HHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhh--HHhh
Confidence             456788899999999999999876  578899999999999999988876667776 9999999999988753  6788


Q ss_pred             CCCcEEECCCCcCCCcCh-HhhcCcccc-EEecCCCce
Q psy16110        669 SQLQIINLSFNRLEKLPE-RLFNTFLYT-NYDMAPNLV  704 (719)
Q Consensus       669 ~~L~~L~Ls~N~l~~i~~-~~~~~l~~L-~L~l~~N~l  704 (719)
                      .+|+.||+++|-|+.... .-+..+..| .|+|.|||+
T Consensus       254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            999999999997764332 113456788 999999999

>KOG4658|consensus

Probab=98.67  E-value=2.2e-08  Score=115.83  Aligned_cols=103  Identities=20%  Similarity=0.238  Sum_probs=45.0

Q ss_pred             CCCEEECcCCCCcccCcCccCCCccCcEEECCCCc--CCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEE
Q psy16110        219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNR--FTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERII  296 (719)
Q Consensus       219 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  296 (719)
                      ..+...+-+|.+..+...  ..++.|++|-+..|.  +..++...|..++.|++||+++|.--.-.|..++.+-+|++|+
T Consensus       524 ~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             heeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            344444444444433322  123344444444443  3444433344455555555554432222234444455555555


Q ss_pred             ccCCCCcccCcccccCcccCcEEEcCCC
Q psy16110        297 LRGNRLTTIEGGAFNGLAKIHILNLGYN  324 (719)
Q Consensus       297 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  324 (719)
                      +++..+..++ ..++++++|.+|++..+
T Consensus       602 L~~t~I~~LP-~~l~~Lk~L~~Lnl~~~  628 (889)
T KOG4658|consen  602 LSDTGISHLP-SGLGNLKKLIYLNLEVT  628 (889)
T ss_pred             ccCCCccccc-hHHHHHHhhheeccccc
Confidence            5554444332 23444445555554443

>KOG1859|consensus

Probab=98.55  E-value=1.7e-09  Score=115.61  Aligned_cols=158  Identities=24%  Similarity=0.307  Sum_probs=100.8

Q ss_pred             ccccccCCCCcccEEEcCCCCccccCcccccchhcc--------------------------------ccEEEcCCCcCC
Q psy16110        155 PMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDT--------------------------------LQELRLADNLFG  202 (719)
Q Consensus       155 p~~~~~~~~~~L~~L~Ls~n~i~~l~~~~f~~~~~~--------------------------------L~~L~Ls~n~i~  202 (719)
                      |..+|..  ..|++|.|.++.|..+-. + .+....                                |...+.++|.+.
T Consensus       102 pi~ifpF--~sLr~LElrg~~L~~~~G-L-~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPF--RSLRVLELRGCDLSTAKG-L-QELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV  177 (1096)
T ss_pred             Cceeccc--cceeeEEecCcchhhhhh-h-HHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence            4455655  369999999998865211 0 112223                                344444444443


Q ss_pred             CcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccC
Q psy16110        203 DSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK  282 (719)
Q Consensus       203 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~  282 (719)
                      .      -.+++.-++.|++|||++|++.+..  .+..|++|++|||++|.+..+|.....++. |+.|.+++|.++.+.
T Consensus       178 ~------mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~  248 (1096)
T KOG1859|consen  178 L------MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR  248 (1096)
T ss_pred             h------HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh
Confidence            1      1234555677778888888777765  467777788888888877777765555555 777888887777663


Q ss_pred             CCcccCCCccCEEEccCCCCcccCc-ccccCcccCcEEEcCCCCCC
Q psy16110        283 ADSFLSQRWLERIILRGNRLTTIEG-GAFNGLAKIHILNLGYNRLN  327 (719)
Q Consensus       283 ~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~  327 (719)
                        .+.++.+|+.||+++|-+.+... ..+..+..|+.|+|.+|++-
T Consensus       249 --gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  249 --GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             --hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence              36677777778888777664431 22455667777777777664

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.44  E-value=4.4e-07  Score=81.02  Aligned_cols=114  Identities=20%  Similarity=0.389  Sum_probs=47.8

Q ss_pred             cccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCcc
Q psy16110        213 EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWL  292 (719)
Q Consensus       213 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  292 (719)
                      +|.++.+|+.+.+.. .+..+...+|.++++|+.+.+.++ +..++..+|.++++|+.+.+.. .+..+....|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            445555555555543 355555555555555555555543 5555555555555555555543 4444445555555556


Q ss_pred             CEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCC
Q psy16110        293 ERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSD  332 (719)
Q Consensus       293 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  332 (719)
                      +.+++..+ +..+...+|.++ +|+.+.+.. .+..++..
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~  120 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEEN  120 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCc
Confidence            65555543 445555555555 555555553 34444443

>KOG4579|consensus

Probab=98.40  E-value=1.3e-08  Score=86.88  Aligned_cols=130  Identities=21%  Similarity=0.318  Sum_probs=101.2

Q ss_pred             CCcEEECcCCCCCCc--CcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEe
Q psy16110        574 SLEELNLNNNELTYL--FPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLN  651 (719)
Q Consensus       574 ~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  651 (719)
                      .+..+||+.|++..+  .+..+.....|+..+|++|.+..+|+..-...+..+.|++++|.+.+++.+ +..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence            466788888887754  123345567788889999999999988666667889999999999998885 88999999999


Q ss_pred             CCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceee
Q psy16110        652 LNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQ  706 (719)
Q Consensus       652 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~  706 (719)
                      ++.|.+...+.. +..+.+|-.||..+|.+..||...|.. +.. .++++++|+..
T Consensus       107 l~~N~l~~~p~v-i~~L~~l~~Lds~~na~~eid~dl~~s-~~~al~~lgnepl~~  160 (177)
T KOG4579|consen  107 LRFNPLNAEPRV-IAPLIKLDMLDSPENARAEIDVDLFYS-SLPALIKLGNEPLGD  160 (177)
T ss_pred             cccCccccchHH-HHHHHhHHHhcCCCCccccCcHHHhcc-ccHHHHHhcCCcccc
Confidence            999999877654 445888999999999999999886642 233 56678888854

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.39  E-value=9.3e-07  Score=78.89  Aligned_cols=128  Identities=18%  Similarity=0.378  Sum_probs=64.8

Q ss_pred             ccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcC
Q psy16110        178 RLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSI  257 (719)
Q Consensus       178 ~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i  257 (719)
                      .|+..+|. .+++|+.+.+.. .+..     +...+|.++++|+.+++..+ +..+...+|.++.+|+.+.+.+ .+..+
T Consensus         2 ~i~~~~F~-~~~~l~~i~~~~-~~~~-----I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i   72 (129)
T PF13306_consen    2 SIGNNAFY-NCSNLESITFPN-TIKK-----IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSI   72 (129)
T ss_dssp             EE-TTTTT-T-TT--EEEETS-T--E-----E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE
T ss_pred             EECHHHHh-CCCCCCEEEECC-CeeE-----eChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccc
Confidence            45666775 456777777764 2332     44456777777777777664 6777777777777777777755 56666


Q ss_pred             CCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCc
Q psy16110        258 PSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIH  317 (719)
Q Consensus       258 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  317 (719)
                      +...|..+++|+.+++..+ +..+....|.++ +|+.+.+.. .+..+...+|.++++|+
T Consensus        73 ~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   73 GDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             -TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            6666777777777777654 666666667666 777777665 55666666777766653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.33  E-value=5.7e-08  Score=92.51  Aligned_cols=168  Identities=18%  Similarity=0.134  Sum_probs=88.5

Q ss_pred             cCCCCccEEEccCCcCCCCChhhh-------------cCCCCCCEEeCCCCcccccc----CCccCCCCCCCEEEccCCc
Q psy16110        493 DELLNLKYLCLAHNHLTEIPEMMF-------------KNLLNLTYLDLSNNNIVNLR----VGSLYGLPSMKRLDLSFNK  555 (719)
Q Consensus       493 ~~~~~L~~L~L~~n~l~~~~~~~~-------------~~l~~L~~L~Ls~n~i~~~~----~~~l~~l~~L~~L~L~~n~  555 (719)
                      ++.+.|++|.+.+|.+..+....+             .+-|.|+++....|++..-.    ...+.....|+++.+..|.
T Consensus       117 s~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg  196 (388)
T COG5238         117 SSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG  196 (388)
T ss_pred             hcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC
Confidence            344555555565555543332211             23356666666666654321    1223344567777777776


Q ss_pred             CCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcC----cCcccCCCCccEEEcCCCCCCCcChhhh------cCCCCCCE
Q psy16110        556 LTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLF----PSSFTIHSKLKTLKLAFNKFNYFPKELI------LGLSYLQE  625 (719)
Q Consensus       556 l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l------~~l~~L~~  625 (719)
                      +..-....+.-..+..+.+|++|||.+|.++...    ..++..|+.|++|.+..|-++.-....+      ...++|..
T Consensus       197 Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~  276 (388)
T COG5238         197 IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMP  276 (388)
T ss_pred             cCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccc
Confidence            5421111111111224577888888888776442    2345567778888888887765333221      12356777


Q ss_pred             EECCCCCCcc-cC------cccCCCCCCCCEEeCCCCcCCCC
Q psy16110        626 IDLSNNQLKT-ID------DYDYGYLPRLRKLNLNNNNIDAI  660 (719)
Q Consensus       626 L~Ls~n~l~~-~~------~~~l~~l~~L~~L~Ls~N~l~~~  660 (719)
                      |-..+|.+.+ +.      ...=.++|-|..|.+.+|+++..
T Consensus       277 L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         277 LPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             cccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence            7777775542 11      11113456666666666666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.28  E-value=1.3e-07  Score=90.08  Aligned_cols=193  Identities=18%  Similarity=0.102  Sum_probs=124.5

Q ss_pred             hhcCCCCCCEEeCCCCccccccCC----ccCCCCCCCEEEccCCcCCcccCCcCC--------CCCCCCCCCCcEEECcC
Q psy16110        515 MFKNLLNLTYLDLSNNNIVNLRVG----SLYGLPSMKRLDLSFNKLTTFKGDYFN--------TKSKPNTSSLEELNLNN  582 (719)
Q Consensus       515 ~~~~l~~L~~L~Ls~n~i~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~--------~~~~~~l~~L~~L~Ls~  582 (719)
                      ++-.|+.|+..++|+|.+....|.    .++..+.|++|.+++|.+..+.+.-+.        ......-|.|++.+...
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            345667777777777766654443    234556777777777776655443221        00112337788888888


Q ss_pred             CCCCCcCc----CcccCCCCccEEEcCCCCCCCc-----ChhhhcCCCCCCEEECCCCCCccc----CcccCCCCCCCCE
Q psy16110        583 NELTYLFP----SSFTIHSKLKTLKLAFNKFNYF-----PKELILGLSYLQEIDLSNNQLKTI----DDYDYGYLPRLRK  649 (719)
Q Consensus       583 n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~  649 (719)
                      |++..-..    ..+.....|+++.+..|.|..-     ....+..+.+|++|||.+|.++-.    ....+...+.|+.
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            88764421    2344457899999999877632     222345578999999999988742    2334555677999


Q ss_pred             EeCCCCcCCCCCcccC------CCCCCCcEEECCCCcCC-----C--cChHhhcCcccc-EEecCCCceeee
Q psy16110        650 LNLNNNNIDAISETCF------FNSSQLQIINLSFNRLE-----K--LPERLFNTFLYT-NYDMAPNLVFQS  707 (719)
Q Consensus       650 L~Ls~N~l~~~~~~~~------~~l~~L~~L~Ls~N~l~-----~--i~~~~~~~l~~L-~L~l~~N~l~~~  707 (719)
                      |.+.+|-++......+      ...|+|+.|-..+|.+.     .  ++.-.-.+++-| .+-+.||++.+.
T Consensus       247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence            9999998876543221      22578999999999553     2  232222467788 888999998663

>KOG2982|consensus

Probab=98.21  E-value=2e-07  Score=90.00  Aligned_cols=39  Identities=26%  Similarity=0.381  Sum_probs=17.8

Q ss_pred             CCccCEEEccCCCCcccC--cccccCcccCcEEEcCCCCCC
Q psy16110        289 QRWLERIILRGNRLTTIE--GGAFNGLAKIHILNLGYNRLN  327 (719)
Q Consensus       289 l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~  327 (719)
                      .+.++.+||.+|.|++..  ...+.+++.|+.|+++.|++.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~  110 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS  110 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence            344455555555544322  112344555555555555544

>KOG1644|consensus

Probab=98.19  E-value=3e-06  Score=77.79  Aligned_cols=106  Identities=17%  Similarity=0.198  Sum_probs=52.0

Q ss_pred             cCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccC-cccccCcccCcEEEc
Q psy16110        243 NLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE-GGAFNGLAKIHILNL  321 (719)
Q Consensus       243 ~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L  321 (719)
                      ....+||++|.+..++.  |..++.|.+|.+++|+|+.+.+.--.-+++|..|.+.+|.|..+. -..+..+++|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            34445555555554442  445555555555555555555443334455555555555554332 122445555666666


Q ss_pred             CCCCCCCcCCCccccccccCCCCCCEEeCCC
Q psy16110        322 GYNRLNKLNSDTFQGGAFNGLAKIHILNLGY  352 (719)
Q Consensus       322 ~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~  352 (719)
                      -+|+++.....-..  .+..+++|+.||+++
T Consensus       121 l~Npv~~k~~YR~y--vl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLY--VLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeE--EEEecCcceEeehhh
Confidence            55555443222111  344455556555544

>KOG4579|consensus

Probab=98.19  E-value=1.5e-07  Score=80.43  Aligned_cols=111  Identities=24%  Similarity=0.284  Sum_probs=94.0

Q ss_pred             CccEEEcCCCCCCCcCh--hhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEE
Q psy16110        598 KLKTLKLAFNKFNYFPK--ELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIIN  675 (719)
Q Consensus       598 ~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  675 (719)
                      .+..++|+.|++..++.  ..+.....|+.++|++|.+...++..-..++.++.|++++|.|++++.+ +..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence            46678899999887654  2345567888899999999998886666778999999999999999988 99999999999


Q ss_pred             CCCCcCCCcChHhhcCcccc-EEecCCCceeeeccC
Q psy16110        676 LSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLS  710 (719)
Q Consensus       676 Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~  710 (719)
                      ++.|++...|.-++. +.++ +|+..+|.....+..
T Consensus       107 l~~N~l~~~p~vi~~-L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAP-LIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cccCccccchHHHHH-HHhHHHhcCCCCccccCcHH
Confidence            999999998886665 9999 999999998776543

>KOG1644|consensus

Probab=98.18  E-value=2.8e-06  Score=77.92  Aligned_cols=105  Identities=22%  Similarity=0.270  Sum_probs=57.5

Q ss_pred             ccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCc
Q psy16110        166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLL  245 (719)
Q Consensus       166 L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  245 (719)
                      =+.++|.+.++..+..--  ........+||++|.+..       ...|..++.|.+|.|++|+|+.+.+..-..+++|+
T Consensus        21 e~e~~LR~lkip~ienlg--~~~d~~d~iDLtdNdl~~-------l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~   91 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLG--ATLDQFDAIDLTDNDLRK-------LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLK   91 (233)
T ss_pred             ccccccccccccchhhcc--ccccccceecccccchhh-------cccCCCccccceEEecCCcceeeccchhhhccccc
Confidence            577888888877665411  123456666666666543       13455566666666666666666665444455566


Q ss_pred             EEECCCCcCCcCCCC-CCCCCCCCcEEEcCCCcCc
Q psy16110        246 ELRMDHNRFTSIPSV-SLNGPRALRILSMAYNRIG  279 (719)
Q Consensus       246 ~L~L~~n~l~~i~~~-~l~~l~~L~~L~Ls~n~i~  279 (719)
                      .|.|.+|+|.++.+. -+..+++|++|.+-+|.++
T Consensus        92 ~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   92 TLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             eEEecCcchhhhhhcchhccCCccceeeecCCchh
Confidence            666666655543221 1333444444444444443

>KOG2982|consensus

Probab=98.16  E-value=7.9e-07  Score=86.02  Aligned_cols=206  Identities=23%  Similarity=0.219  Sum_probs=100.1

Q ss_pred             CccEEEcCCCCCCCCCch-hh-cCCCCccEEEccCCcCCCCCh--hhhcCCCCCCEEeCCCCccccccCCccCCCCCCCE
Q psy16110        473 KLEVLDLAATGLKSIPQY-QF-DELLNLKYLCLAHNHLTEIPE--MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR  548 (719)
Q Consensus       473 ~L~~L~ls~n~l~~~~~~-~~-~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~  548 (719)
                      .++.+.+.++.|..+... .| ..++.++.++|.+|.++....  ..+.++|.|+.|+++.|++...+...-....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            445566666666554321 12 235667788888887775433  23567788888888888776543221134567777


Q ss_pred             EEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcC--cCcccC-CCCccEEEcCCCCCCCcCh--hhhcCCCCC
Q psy16110        549 LDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLF--PSSFTI-HSKLKTLKLAFNKFNYFPK--ELILGLSYL  623 (719)
Q Consensus       549 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~--~~l~~l~~L  623 (719)
                      |.|.+..+.--...    ..+..++.+++|.+|.|.+....  ....+. -+.+++|+.-.|.......  ..-.-++++
T Consensus       126 lVLNgT~L~w~~~~----s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv  201 (418)
T KOG2982|consen  126 LVLNGTGLSWTQST----SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV  201 (418)
T ss_pred             EEEcCCCCChhhhh----hhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence            77777654411111    11234566666767666432220  111111 1244444444442211000  001123445


Q ss_pred             CEEECCCCCCcccC-cccCCCCCCCCEEeCCCCcCCCC-CcccCCCCCCCcEEECCCCcCC
Q psy16110        624 QEIDLSNNQLKTID-DYDYGYLPRLRKLNLNNNNIDAI-SETCFFNSSQLQIINLSFNRLE  682 (719)
Q Consensus       624 ~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~  682 (719)
                      ..+-+..|.+.+.. ...++.+|.+.-|+|+.|+|... .-..+..+++|..|.+++|++.
T Consensus       202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            55555555544322 22344445555555555555442 1223444555555555555554

>KOG2120|consensus

Probab=98.15  E-value=4.5e-08  Score=94.40  Aligned_cols=84  Identities=30%  Similarity=0.343  Sum_probs=38.1

Q ss_pred             cccCCCccEEECCCCCCcCcCC----cchhccCCEEEccCCcc----cccccCccCCCCccEEEccCCC-CCCcCccccc
Q psy16110        374 FQDFQKLKSLDLNGNFLINLES----TGLEDTLDNLNVRDNQI----TTLSSSALNYKLLTKLDLSHNN-LKELEPTAFT  444 (719)
Q Consensus       374 l~~~~~L~~L~L~~n~l~~~~~----~~~~~~L~~L~l~~n~l----~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~  444 (719)
                      +.+++.|..|++++|.+..-..    ...-+.|+.|+++++.-    ..+..-...+|+|..|||++|. ++.-....|.
T Consensus       256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~  335 (419)
T KOG2120|consen  256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  335 (419)
T ss_pred             HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence            3345555555555553332111    12224555566655431    1111111226666666666653 2222223445


Q ss_pred             CCCcCcEEeCcCC
Q psy16110        445 NVPTLLHLNLSRN  457 (719)
Q Consensus       445 ~l~~L~~L~L~~n  457 (719)
                      +++.|++|.++.|
T Consensus       336 kf~~L~~lSlsRC  348 (419)
T KOG2120|consen  336 KFNYLQHLSLSRC  348 (419)
T ss_pred             hcchheeeehhhh
Confidence            5666666666665

>KOG2120|consensus

Probab=98.15  E-value=3.1e-08  Score=95.55  Aligned_cols=133  Identities=24%  Similarity=0.203  Sum_probs=71.5

Q ss_pred             ccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCC-CCcCcCC---cchhccCCEEEccCCcccc
Q psy16110        339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN-FLINLES---TGLEDTLDNLNVRDNQITT  414 (719)
Q Consensus       339 l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n-~l~~~~~---~~~~~~L~~L~l~~n~l~~  414 (719)
                      +..+.+|+.|.+.++++.           ..+...+.+..+|+.|+++.+ .++....   +..+..|.+|++++|.+..
T Consensus       206 Ls~C~kLk~lSlEg~~Ld-----------D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~  274 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLD-----------DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFT  274 (419)
T ss_pred             HHHHHhhhhccccccccC-----------cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccc
Confidence            445566666666666552           233344555667777777776 3444332   4456778888888887653


Q ss_pred             cccC-cc-C-CCCccEEEccCCCCC---CcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCC
Q psy16110        415 LSSS-AL-N-YKLLTKLDLSHNNLK---ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAAT  482 (719)
Q Consensus       415 ~~~~-~~-~-~~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n  482 (719)
                      -.-. +. . -++|+.|+++++.-.   .-.......+++|.+|||++|..++.--...|..++.|++|.++.|
T Consensus       275 ~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC  348 (419)
T KOG2120|consen  275 EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC  348 (419)
T ss_pred             hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence            2211 11 1 466778888776321   1111223567777777777764443321222333444455544444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.99  E-value=5.5e-06  Score=57.55  Aligned_cols=39  Identities=31%  Similarity=0.472  Sum_probs=21.5

Q ss_pred             CCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcC
Q psy16110        646 RLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLP  685 (719)
Q Consensus       646 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~  685 (719)
                      +|++|++++|+|+.+++ .+.++++|+.|++++|++++++
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCc
Confidence            45666666666665544 2555666666666666665554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=1.1e-05  Score=55.97  Aligned_cols=38  Identities=34%  Similarity=0.564  Sum_probs=17.1

Q ss_pred             CccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCccc
Q psy16110        598 KLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTI  636 (719)
Q Consensus       598 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  636 (719)
                      +|++|++++|+++.+++. ++++++|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCC
Confidence            344555555555544432 44445555555555544433

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.82  E-value=8.3e-05  Score=77.68  Aligned_cols=135  Identities=15%  Similarity=0.210  Sum_probs=82.6

Q ss_pred             cCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCC-cCCcccCCcCCCCCCCC
Q psy16110        493 DELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN-KLTTFKGDYFNTKSKPN  571 (719)
Q Consensus       493 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~  571 (719)
                      ..+..++.|++++|.++.+|.  +  ..+|++|.+++|.--...|..+  .++|++|++++| .+..++           
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----------  111 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----------  111 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----------
Confidence            346788899999998888872  2  3579999998754433334433  257888888887 444322           


Q ss_pred             CCCCcEEECcCCCCCCcCcCcccC-CCCccEEEcCCCC-CC--CcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCC
Q psy16110        572 TSSLEELNLNNNELTYLFPSSFTI-HSKLKTLKLAFNK-FN--YFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRL  647 (719)
Q Consensus       572 l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~-l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  647 (719)
                       .+|+.|+++.+....+     .. .++|++|.+.+++ ..  .++ ..  -.++|++|++++|....+++ .+.  .+|
T Consensus       112 -~sLe~L~L~~n~~~~L-----~~LPssLk~L~I~~~n~~~~~~lp-~~--LPsSLk~L~Is~c~~i~LP~-~LP--~SL  179 (426)
T PRK15386        112 -ESVRSLEIKGSATDSI-----KNVPNGLTSLSINSYNPENQARID-NL--ISPSLKTLSLTGCSNIILPE-KLP--ESL  179 (426)
T ss_pred             -cccceEEeCCCCCccc-----ccCcchHhheeccccccccccccc-cc--cCCcccEEEecCCCcccCcc-ccc--ccC
Confidence             4677788776554322     11 2457777775432 11  111 11  12578888888877654443 232  578


Q ss_pred             CEEeCCCCc
Q psy16110        648 RKLNLNNNN  656 (719)
Q Consensus       648 ~~L~Ls~N~  656 (719)
                      +.|+++.+.
T Consensus       180 k~L~ls~n~  188 (426)
T PRK15386        180 QSITLHIEQ  188 (426)
T ss_pred             cEEEecccc
Confidence            888887764

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.81  E-value=8.6e-05  Score=77.57  Aligned_cols=135  Identities=21%  Similarity=0.245  Sum_probs=88.9

Q ss_pred             CCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCC-cCCCCChhhhcCCCCCCEEeCCCC-ccccccCCccCCCCCCC
Q psy16110        470 PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN-HLTEIPEMMFKNLLNLTYLDLSNN-NIVNLRVGSLYGLPSMK  547 (719)
Q Consensus       470 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~  547 (719)
                      .+.+++.|++++|.++.+|.    -..+|+.|.+++| .++.++.. +  .++|++|++++| .+..+ |      ++|+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sL-P------~sLe  115 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGL-P------ESVR  115 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccc-c------cccc
Confidence            35788999999998888872    2347999999885 56666643 2  368999999988 44432 2      3588


Q ss_pred             EEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCC-CCCc-CcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110        548 RLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNE-LTYL-FPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE  625 (719)
Q Consensus       548 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  625 (719)
                      .|++..+....+.  .+.       ++|+.|.+.+++ .... .+.  .-.++|++|++++|.....|.. +.  .+|+.
T Consensus       116 ~L~L~~n~~~~L~--~LP-------ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~-LP--~SLk~  181 (426)
T PRK15386        116 SLEIKGSATDSIK--NVP-------NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEK-LP--ESLQS  181 (426)
T ss_pred             eEEeCCCCCcccc--cCc-------chHhheecccccccccccccc--ccCCcccEEEecCCCcccCccc-cc--ccCcE
Confidence            8888776654332  111       568888875433 1111 111  1236899999999887665543 33  68999


Q ss_pred             EECCCCC
Q psy16110        626 IDLSNNQ  632 (719)
Q Consensus       626 L~Ls~n~  632 (719)
                      |+++.+.
T Consensus       182 L~ls~n~  188 (426)
T PRK15386        182 ITLHIEQ  188 (426)
T ss_pred             EEecccc
Confidence            9998764

>KOG4341|consensus

Probab=97.79  E-value=5.3e-07  Score=91.32  Aligned_cols=134  Identities=22%  Similarity=0.153  Sum_probs=75.6

Q ss_pred             CCCccEEEccCCCC-CCcCcccc-cCCCcCcEEeCcCCCCCCCCCCCCCC-CCCCccEEEcCCCCCCCCC--chhhcCCC
Q psy16110        422 YKLLTKLDLSHNNL-KELEPTAF-TNVPTLLHLNLSRNAHLSSLPVGGFD-PLKKLEVLDLAATGLKSIP--QYQFDELL  496 (719)
Q Consensus       422 ~~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~~L~L~~n~~l~~l~~~~~~-~l~~L~~L~ls~n~l~~~~--~~~~~~~~  496 (719)
                      +..|+.|+.+++.- +...-+++ .++++|+.+.++.+..++......+. +++.|+.+++..+....-.  ...-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            66677777776643 22222223 35678888888888766665543332 4677888887777443211  11223567


Q ss_pred             CccEEEccCCcCC-CCC----hhhhcCCCCCCEEeCCCCccc-cccCCccCCCCCCCEEEccCCc
Q psy16110        497 NLKYLCLAHNHLT-EIP----EMMFKNLLNLTYLDLSNNNIV-NLRVGSLYGLPSMKRLDLSFNK  555 (719)
Q Consensus       497 ~L~~L~L~~n~l~-~~~----~~~~~~l~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~L~~n~  555 (719)
                      .|+.+.+++|... ...    ...-..+..|+.+.+++++.. +.....+..+++|+.+++.+++
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            7777777777432 211    111134556677777776543 2333445556666666666554

>KOG4341|consensus

Probab=97.60  E-value=3e-06  Score=85.95  Aligned_cols=207  Identities=20%  Similarity=0.095  Sum_probs=91.1

Q ss_pred             cCCCcCcEEeCcCCCCCCCCCCC-CCCCCCCccEEEcCCCCCCCCCchhh----cCCCCccEEEccCC-cCCCCCh-hhh
Q psy16110        444 TNVPTLLHLNLSRNAHLSSLPVG-GFDPLKKLEVLDLAATGLKSIPQYQF----DELLNLKYLCLAHN-HLTEIPE-MMF  516 (719)
Q Consensus       444 ~~l~~L~~L~L~~n~~l~~l~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~----~~~~~L~~L~L~~n-~l~~~~~-~~~  516 (719)
                      .++++|++++++.++.+..-... .+.++..++.+...+|.-.  +.+.+    ..+.-+..+++.+| .+++... ..-
T Consensus       213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~  290 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA  290 (483)
T ss_pred             HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence            35566666666666555441111 1234445555555544211  11111    23344555555555 2332221 111


Q ss_pred             cCCCCCCEEeCCCCcc-ccccC-CccCCCCCCCEEEccCCc-CCcccCCcCCCCCCCCCCCCcEEECcCCCCCCc--CcC
Q psy16110        517 KNLLNLTYLDLSNNNI-VNLRV-GSLYGLPSMKRLDLSFNK-LTTFKGDYFNTKSKPNTSSLEELNLNNNELTYL--FPS  591 (719)
Q Consensus       517 ~~l~~L~~L~Ls~n~i-~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~  591 (719)
                      ..+..|++|+.+++.- ++..- .--.+.++|+.|.+++++ +++.....+.    .+++.|+.+++..+.....  +..
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----rn~~~Le~l~~e~~~~~~d~tL~s  366 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG----RNCPHLERLDLEECGLITDGTLAS  366 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----cCChhhhhhcccccceehhhhHhh
Confidence            3456667777766532 22111 112345677777777664 2222211111    2456666666666543322  111


Q ss_pred             cccCCCCccEEEcCCCCCC-CcC----hhhhcCCCCCCEEECCCCCCcc-cCcccCCCCCCCCEEeCCCCc
Q psy16110        592 SFTIHSKLKTLKLAFNKFN-YFP----KELILGLSYLQEIDLSNNQLKT-IDDYDYGYLPRLRKLNLNNNN  656 (719)
Q Consensus       592 ~~~~l~~L~~L~L~~n~l~-~~~----~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~N~  656 (719)
                      .-.+++.|+++.++++... ...    ...-.....|+++.+++++... -.-..+..+++|+.+++-+++
T Consensus       367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            1224566666666655322 110    0011223455556666554431 112234445555555555443

>KOG2123|consensus

Probab=97.37  E-value=5.2e-06  Score=79.76  Aligned_cols=104  Identities=18%  Similarity=0.250  Sum_probs=58.2

Q ss_pred             ccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCc-ccccCcccCcEEE
Q psy16110        242 DNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEG-GAFNGLAKIHILN  320 (719)
Q Consensus       242 ~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~  320 (719)
                      .+.+.|+..+|.++.|.  ....++.|++|.||-|.|+.+.+  +..|++|+.|+|..|.|.++.. .-+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            34455555566555554  24556666666666666666644  5666666666666666665542 2345666666666


Q ss_pred             cCCCCCCCcCCCccccccccCCCCCCEEe
Q psy16110        321 LGYNRLNKLNSDTFQGGAFNGLAKIHILN  349 (719)
Q Consensus       321 L~~n~l~~~~~~~~~~~~l~~l~~L~~L~  349 (719)
                      |..|+-.+-.........+..+++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            66665544333222222344456666554

>KOG3665|consensus

Probab=97.35  E-value=8.5e-05  Score=84.29  Aligned_cols=105  Identities=26%  Similarity=0.363  Sum_probs=43.7

Q ss_pred             cccEEEcCCCCcc--ccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCc
Q psy16110        165 PIRRLDFSGNALR--RLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCD  242 (719)
Q Consensus       165 ~L~~L~Ls~n~i~--~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  242 (719)
                      +|++||++|...-  ..+.... ..+|+|+.|.+++-.+...-   + .....++++|..||+|+.+++.+  ..++.++
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig-~~LPsL~sL~i~~~~~~~~d---F-~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lk  195 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIG-TMLPSLRSLVISGRQFDNDD---F-SQLCASFPNLRSLDISGTNISNL--SGISRLK  195 (699)
T ss_pred             hhhhcCccccchhhccHHHHHh-hhCcccceEEecCceecchh---H-HHHhhccCccceeecCCCCccCc--HHHhccc
Confidence            4566666554321  2222222 23455555555544332200   0 01233455555555555555544  2244455


Q ss_pred             cCcEEECCCCcCCcCC-CCCCCCCCCCcEEEcCCC
Q psy16110        243 NLLELRMDHNRFTSIP-SVSLNGPRALRILSMAYN  276 (719)
Q Consensus       243 ~L~~L~L~~n~l~~i~-~~~l~~l~~L~~L~Ls~n  276 (719)
                      +|+.|.+.+=.+..-. -..+.++++|++||+|..
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            5555554443333211 001334445555555443

>KOG3665|consensus

Probab=97.23  E-value=0.00013  Score=82.73  Aligned_cols=133  Identities=14%  Similarity=0.143  Sum_probs=70.1

Q ss_pred             ccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccC-cCccCCCccCcEEECCCCcCCcCCCCCCCCCCC
Q psy16110        189 DTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIE-EGILKGCDNLLELRMDHNRFTSIPSVSLNGPRA  267 (719)
Q Consensus       189 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~  267 (719)
                      .+|++|++++...-..   .+...--..+|+|++|.+++-.+..-. ...+.++++|..||+|+++++.+.  .++.+++
T Consensus       122 ~nL~~LdI~G~~~~s~---~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~--GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSN---GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS--GISRLKN  196 (699)
T ss_pred             HhhhhcCccccchhhc---cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH--HHhcccc
Confidence            4677777776543211   011111234677777777765543321 123456677777777777777663  3667777


Q ss_pred             CcEEEcCCCcCcccC-CCcccCCCccCEEEccCCCCcccC------cccccCcccCcEEEcCCCCC
Q psy16110        268 LRILSMAYNRIGTLK-ADSFLSQRWLERIILRGNRLTTIE------GGAFNGLAKIHILNLGYNRL  326 (719)
Q Consensus       268 L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~L~~n~l  326 (719)
                      |++|.+.+=.+..-. -..+.++++|+.||+|........      -+.-..+++|+.||.+++.+
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            777766655544311 123455666777776655433221      00112355555555554443

>KOG2123|consensus

Probab=96.97  E-value=1.5e-05  Score=76.72  Aligned_cols=100  Identities=28%  Similarity=0.346  Sum_probs=57.6

Q ss_pred             CCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCCh-hhhcCCCCCCE
Q psy16110        446 VPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE-MMFKNLLNLTY  524 (719)
Q Consensus       446 l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~  524 (719)
                      +.+.++|+.-+| .+.+|..  ...++.|++|.|+-|+|+.+.+  +..|++|+.|+|..|.|.++.. ..+.++++|+.
T Consensus        18 l~~vkKLNcwg~-~L~DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCC-CccHHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            345566666666 5555442  3456667777777776666653  5566677777777776666554 23456666666


Q ss_pred             EeCCCCccccccCC-----ccCCCCCCCEEE
Q psy16110        525 LDLSNNNIVNLRVG-----SLYGLPSMKRLD  550 (719)
Q Consensus       525 L~Ls~n~i~~~~~~-----~l~~l~~L~~L~  550 (719)
                      |+|..|+-.+..+.     .+.-+|+|++|+
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            66666654443221     233455555554

>KOG2739|consensus

Probab=96.82  E-value=0.0007  Score=65.31  Aligned_cols=62  Identities=24%  Similarity=0.258  Sum_probs=25.5

Q ss_pred             CCCCCCEEECCCC--CCcccCcccCCCCCCCCEEeCCCCcCCCCC-cccCCCCCCCcEEECCCCc
Q psy16110        619 GLSYLQEIDLSNN--QLKTIDDYDYGYLPRLRKLNLNNNNIDAIS-ETCFFNSSQLQIINLSFNR  680 (719)
Q Consensus       619 ~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~  680 (719)
                      .++.|+.|+++.|  ++.+-.......+|+|+++++++|+|+.+. -..+..+.+|..||+.+|.
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence            3444555555555  222211112233455555555555544321 0123334445555555543

>KOG2739|consensus

Probab=96.73  E-value=0.0007  Score=65.33  Aligned_cols=39  Identities=18%  Similarity=0.254  Sum_probs=16.7

Q ss_pred             CccCEEEccCCCCcccC-cccccCcccCcEEEcCCCCCCC
Q psy16110        290 RWLERIILRGNRLTTIE-GGAFNGLAKIHILNLGYNRLNK  328 (719)
Q Consensus       290 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~  328 (719)
                      ++|++|++++|+|..+. -..+..+.+|..|++.+|..+.
T Consensus        91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             CceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence            44555555555444221 1113334444555555554443

>KOG1947|consensus

Probab=96.17  E-value=0.00067  Score=75.43  Aligned_cols=62  Identities=29%  Similarity=0.295  Sum_probs=31.2

Q ss_pred             CCCccEEEcCCCC-CCCCCchhhcC-CCCccEEEccCCc-CCCCCh-hhhcCCCCCCEEeCCCCcc
Q psy16110        471 LKKLEVLDLAATG-LKSIPQYQFDE-LLNLKYLCLAHNH-LTEIPE-MMFKNLLNLTYLDLSNNNI  532 (719)
Q Consensus       471 l~~L~~L~ls~n~-l~~~~~~~~~~-~~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~i  532 (719)
                      +.+|+.++++++. ++......+.. +++|++|.+..+. +++..- .....+++|++|+++.+..
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            4555566666554 44433333332 5666666655554 332221 1234456666666666543

>KOG1947|consensus

Probab=95.95  E-value=0.0008  Score=74.83  Aligned_cols=191  Identities=23%  Similarity=0.183  Sum_probs=102.1

Q ss_pred             cCCCcCcEEeCcCCCCCCCCC-CCCCCCCCCccEEEcCCC-CC-CCCC---chhhcCCCCccEEEccCCc-CCCCChhhh
Q psy16110        444 TNVPTLLHLNLSRNAHLSSLP-VGGFDPLKKLEVLDLAAT-GL-KSIP---QYQFDELLNLKYLCLAHNH-LTEIPEMMF  516 (719)
Q Consensus       444 ~~l~~L~~L~L~~n~~l~~l~-~~~~~~l~~L~~L~ls~n-~l-~~~~---~~~~~~~~~L~~L~L~~n~-l~~~~~~~~  516 (719)
                      ..++.|+.+.+.++..+.... ......++.|+.|+++++ .. ...+   ......+++|+.|+++.+. +++..-..+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            347888888888886666532 122456788888888873 21 1111   1233456778888888876 554443333


Q ss_pred             c-CCCCCCEEeCCCCc-cccccC-CccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcc
Q psy16110        517 K-NLLNLTYLDLSNNN-IVNLRV-GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSF  593 (719)
Q Consensus       517 ~-~l~~L~~L~Ls~n~-i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  593 (719)
                      . .+++|++|.+..+. +++..- .....+++|++|+++++....  ...+... ..++++++.|.+....         
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~--d~~l~~~-~~~c~~l~~l~~~~~~---------  332 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT--DSGLEAL-LKNCPNLRELKLLSLN---------  332 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch--HHHHHHH-HHhCcchhhhhhhhcC---------
Confidence            3 37788888877666 444222 233456778888888765431  0101000 1124555554333221         


Q ss_pred             cCCCCccEEEcCCCCC---CCcChhhhcCCCCCCEEECCCCCCcccC-cccCCCCCCC
Q psy16110        594 TIHSKLKTLKLAFNKF---NYFPKELILGLSYLQEIDLSNNQLKTID-DYDYGYLPRL  647 (719)
Q Consensus       594 ~~l~~L~~L~L~~n~l---~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L  647 (719)
                       .++.++.+.+.+...   ..........++.++.+.+.++...... ...+.+++.|
T Consensus       333 -~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  333 -GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             -CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence             134444444444322   1222233466778888888777644433 2344555555

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.68  E-value=0.0033  Score=36.24  Aligned_cols=21  Identities=33%  Similarity=0.613  Sum_probs=12.8

Q ss_pred             CCcEEECCCCcCCCcChHhhcC
Q psy16110        670 QLQIINLSFNRLEKLPERLFNT  691 (719)
Q Consensus       670 ~L~~L~Ls~N~l~~i~~~~~~~  691 (719)
                      +|++|||++|+++.+|++ |++
T Consensus         1 ~L~~Ldls~n~l~~ip~~-~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS-FSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTT-TTT
T ss_pred             CccEEECCCCcCEeCChh-hcC
Confidence            356666666666666665 443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.07  E-value=0.022  Score=34.35  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=19.2

Q ss_pred             CCCCcEEECCCCcCCCcChHhhc
Q psy16110        668 SSQLQIINLSFNRLEKLPERLFN  690 (719)
Q Consensus       668 l~~L~~L~Ls~N~l~~i~~~~~~  690 (719)
                      +++|++|+|++|+++.+|+.+|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788899999999988888875

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.07  E-value=0.022  Score=34.35  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=19.2

Q ss_pred             CCCCcEEECCCCcCCCcChHhhc
Q psy16110        668 SSQLQIINLSFNRLEKLPERLFN  690 (719)
Q Consensus       668 l~~L~~L~Ls~N~l~~i~~~~~~  690 (719)
                      +++|++|+|++|+++.+|+.+|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788899999999988888875

>KOG4308|consensus

Probab=95.03  E-value=0.00012  Score=79.60  Aligned_cols=186  Identities=28%  Similarity=0.286  Sum_probs=123.6

Q ss_pred             CccEEEccCCcCCCCCh----hhhcCCCCCCEEeCCCCccccccC----CccCCC-CCCCEEEccCCcCCcccCCcCCCC
Q psy16110        497 NLKYLCLAHNHLTEIPE----MMFKNLLNLTYLDLSNNNIVNLRV----GSLYGL-PSMKRLDLSFNKLTTFKGDYFNTK  567 (719)
Q Consensus       497 ~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~----~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~  567 (719)
                      .+..+.+.+|.+..-..    .++...+.|+.|++++|.+.+...    ..+... ..+++|++..|.++......... 
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~-  166 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA-  166 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH-
Confidence            37888899998875443    346778899999999999885322    223332 56778888888887654432221 


Q ss_pred             CCCCCCCCcEEECcCCCCCCc----CcCcc----cCCCCccEEEcCCCCCCCcC----hhhhcCCCC-CCEEECCCCCCc
Q psy16110        568 SKPNTSSLEELNLNNNELTYL----FPSSF----TIHSKLKTLKLAFNKFNYFP----KELILGLSY-LQEIDLSNNQLK  634 (719)
Q Consensus       568 ~~~~l~~L~~L~Ls~n~l~~~----~~~~~----~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~-L~~L~Ls~n~l~  634 (719)
                      .+.....++.+|++.|.+...    .+.++    ....++++|++++|.++...    ...+...++ +..+++.+|.+.
T Consensus       167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            122358889999999987422    22233    34778888999988877422    223445555 777888888887


Q ss_pred             ccC----cccCCCC-CCCCEEeCCCCcCCCCCc----ccCCCCCCCcEEECCCCcCCC
Q psy16110        635 TID----DYDYGYL-PRLRKLNLNNNNIDAISE----TCFFNSSQLQIINLSFNRLEK  683 (719)
Q Consensus       635 ~~~----~~~l~~l-~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~  683 (719)
                      +..    ...+..+ ..++.++++.|.|++...    ..+..++.++.+.+++|.+..
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            542    1234444 577888888888877533    344567788888888888763

>KOG4308|consensus

Probab=94.97  E-value=0.00018  Score=78.19  Aligned_cols=208  Identities=23%  Similarity=0.177  Sum_probs=138.8

Q ss_pred             CccEEEcCCCCCCCCCc----hhhcCCCCccEEEccCCcCCCCChhh----hcCC-CCCCEEeCCCCcccccc----CCc
Q psy16110        473 KLEVLDLAATGLKSIPQ----YQFDELLNLKYLCLAHNHLTEIPEMM----FKNL-LNLTYLDLSNNNIVNLR----VGS  539 (719)
Q Consensus       473 ~L~~L~ls~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~Ls~n~i~~~~----~~~  539 (719)
                      .+..+.+.+|.+..-..    ..+...+.|+.|++++|.+.......    +... ..+++|++..|.++...    ...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            37888999998876443    35567889999999999988433322    2222 56778888888887643    345


Q ss_pred             cCCCCCCCEEEccCCcCCcccCCcCCCC---CCCCCCCCcEEECcCCCCCCcC----cCcccCCCC-ccEEEcCCCCCCC
Q psy16110        540 LYGLPSMKRLDLSFNKLTTFKGDYFNTK---SKPNTSSLEELNLNNNELTYLF----PSSFTIHSK-LKTLKLAFNKFNY  611 (719)
Q Consensus       540 l~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~-L~~L~L~~n~l~~  611 (719)
                      +.....++.++++.|.+...........   .+....+++.|.+++|.++...    ...+...+. ++++++.+|++..
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            5567899999999998753221111110   0113478999999999987431    233455566 7889999999886


Q ss_pred             cCh----hhhcCC-CCCCEEECCCCCCcccC----cccCCCCCCCCEEeCCCCcCCCCCc----ccCCCCCCCcEEECCC
Q psy16110        612 FPK----ELILGL-SYLQEIDLSNNQLKTID----DYDYGYLPRLRKLNLNNNNIDAISE----TCFFNSSQLQIINLSF  678 (719)
Q Consensus       612 ~~~----~~l~~l-~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~  678 (719)
                      ...    ..+..+ ..+++++++.|.|+.-.    ...+..++.++++.+++|.+.....    ........+..+-+.+
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~  327 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG  327 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence            422    223444 67899999999998533    3345667899999999999876422    1223334555666665


Q ss_pred             Cc
Q psy16110        679 NR  680 (719)
Q Consensus       679 N~  680 (719)
                      +.
T Consensus       328 ~~  329 (478)
T KOG4308|consen  328 TG  329 (478)
T ss_pred             cC
Confidence            43

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.49  E-value=0.017  Score=33.25  Aligned_cols=16  Identities=44%  Similarity=0.644  Sum_probs=6.8

Q ss_pred             CCEEECcCCCCcccCc
Q psy16110        220 LRILDLSDNQIKAIEE  235 (719)
Q Consensus       220 L~~L~Ls~n~l~~~~~  235 (719)
                      |++|||++|+++.+++
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            3444444444443333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.40  E-value=0.025  Score=30.17  Aligned_cols=16  Identities=50%  Similarity=0.787  Sum_probs=7.4

Q ss_pred             CCcEEECCCCcCCCcC
Q psy16110        670 QLQIINLSFNRLEKLP  685 (719)
Q Consensus       670 ~L~~L~Ls~N~l~~i~  685 (719)
                      +|+.|+|++|+|+.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5666666666665554

...

>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase

Probab=93.91  E-value=0.016  Score=46.75  Aligned_cols=62  Identities=26%  Similarity=0.342  Sum_probs=48.2

Q ss_pred             ccCCccccCCCCCCCCCCCCcee-----------EEee---------------eecccccchhhhhc---ccCCccCCCC
Q psy16110         49 MDCDNVAFPNGEYPTLPYGLNLV-----------TFSQ---------------RWVGHQILPMQIFS---SSVSSEPCDT   99 (719)
Q Consensus        49 ~~c~~~~~~~~~~~~l~~~~~~~-----------~~~~---------------~~~~~~~~~~~~~~---~~~~~~~c~~   99 (719)
                      -+|+||+++||+|+|++.+.+++           +|.+               |..++...|+.++.   .+.++.+-|+
T Consensus         2 ~y~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~l~RvL~p~ErPl~IqkrlL~q~GY~~~D~   81 (97)
T cd01775           2 SYCIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHDLSRVLRPTEKPLLIQKRLLLQVGYEERDR   81 (97)
T ss_pred             ceEEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECCeeeecCCcCCcHHHHHHHHHHcCCCCCCc
Confidence            48999999999999999999987           2222               78888899988887   5567776665


Q ss_pred             cC----CCCCccccc
Q psy16110        100 MI----DDFPYPCRC  110 (719)
Q Consensus       100 ~~----~~~~~~C~c  110 (719)
                      ..    ++.+|.|++
T Consensus        82 l~~lGreD~Syl~rF   96 (97)
T cd01775          82 IEDIGREDNSFLCRF   96 (97)
T ss_pred             HHHhCcccceEEEEe
Confidence            44    567777764

CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.85  E-value=0.057  Score=28.81  Aligned_cols=11  Identities=36%  Similarity=0.619  Sum_probs=3.1

Q ss_pred             CcEEECCCCcC
Q psy16110        244 LLELRMDHNRF  254 (719)
Q Consensus       244 L~~L~L~~n~l  254 (719)
                      |++|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33333333333

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.58  E-value=0.092  Score=31.56  Aligned_cols=21  Identities=48%  Similarity=0.718  Sum_probs=11.5

Q ss_pred             CCCCEEECcCCCCcccCcCcc
Q psy16110        218 VNLRILDLSDNQIKAIEEGIL  238 (719)
Q Consensus       218 ~~L~~L~Ls~n~l~~~~~~~~  238 (719)
                      ++|++|+|++|+|+.+++++|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555555444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.58  E-value=0.092  Score=31.56  Aligned_cols=21  Identities=48%  Similarity=0.718  Sum_probs=11.5

Q ss_pred             CCCCEEECcCCCCcccCcCcc
Q psy16110        218 VNLRILDLSDNQIKAIEEGIL  238 (719)
Q Consensus       218 ~~L~~L~Ls~n~l~~~~~~~~  238 (719)
                      ++|++|+|++|+|+.+++++|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555555444

>KOG3864|consensus

Probab=90.73  E-value=0.025  Score=52.66  Aligned_cols=82  Identities=23%  Similarity=0.217  Sum_probs=49.6

Q ss_pred             CCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCC-CCCcChhhh-cCCCCCCEEECCCC-CCcccCcccCCCCCCCCE
Q psy16110        573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNK-FNYFPKELI-LGLSYLQEIDLSNN-QLKTIDDYDYGYLPRLRK  649 (719)
Q Consensus       573 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~  649 (719)
                      ..++.+|-++..|....-+.+..++.++.|.+.+|+ +...--+.+ +..++|+.|+|++| +|++-.-..+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            357778888887777666666777777777777763 222111111 12367777777776 455444445566667776


Q ss_pred             EeCCC
Q psy16110        650 LNLNN  654 (719)
Q Consensus       650 L~Ls~  654 (719)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            66654

>KOG3864|consensus

Probab=88.33  E-value=0.078  Score=49.48  Aligned_cols=82  Identities=16%  Similarity=0.137  Sum_probs=48.3

Q ss_pred             CccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCC-CCCCccEEEcCCC-CCCCCCchhhcCCCCccEE
Q psy16110        424 LLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFD-PLKKLEVLDLAAT-GLKSIPQYQFDELLNLKYL  501 (719)
Q Consensus       424 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~-~l~~L~~L~ls~n-~l~~~~~~~~~~~~~L~~L  501 (719)
                      .++.+|-++..|..+.-..+.+++.++.|.+.+|..+.+-.-+.+. ..++|+.|++++| +|++-....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4677788887777665556777778888888877655443221111 2356666666655 4554444445555555555


Q ss_pred             EccC
Q psy16110        502 CLAH  505 (719)
Q Consensus       502 ~L~~  505 (719)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5544

>KOG0473|consensus

Probab=86.40  E-value=0.024  Score=53.70  Aligned_cols=93  Identities=13%  Similarity=0.089  Sum_probs=63.6

Q ss_pred             CcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCcc
Q psy16110        255 TSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTF  334 (719)
Q Consensus       255 ~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  334 (719)
                      +++|-..+......+.||++.|++..+. ..|+-++.|..|+++.|++... |..++.+..++.+++..|.....+.   
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~~p~---  105 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQQPK---  105 (326)
T ss_pred             cccchhhhhccceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhhCCc---
Confidence            3455445556666777777777776664 3366677777788887777655 3456777777777777777777666   


Q ss_pred             ccccccCCCCCCEEeCCCCCC
Q psy16110        335 QGGAFNGLAKIHILNLGYNRL  355 (719)
Q Consensus       335 ~~~~l~~l~~L~~L~L~~n~l  355 (719)
                         +++..++++.+++.++.+
T Consensus       106 ---s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  106 ---SQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             ---cccccCCcchhhhccCcc
Confidence               566777777777777764

>KOG0473|consensus

Probab=86.27  E-value=0.01  Score=56.16  Aligned_cols=94  Identities=18%  Similarity=0.241  Sum_probs=66.5

Q ss_pred             CCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhh
Q psy16110        610 NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF  689 (719)
Q Consensus       610 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~  689 (719)
                      +.+|...+......+.||++.|++..... .|+.++.|..|+++.|++.-.+.+ +.....+..+++..|..+..|.+ |
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~s-~  107 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQPKS-Q  107 (326)
T ss_pred             cccchhhhhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCCcc-c
Confidence            34554445666777788888887776655 466677788888888887766543 66667777788888877777764 5


Q ss_pred             cCcccc-EEecCCCceee
Q psy16110        690 NTFLYT-NYDMAPNLVFQ  706 (719)
Q Consensus       690 ~~l~~L-~L~l~~N~l~~  706 (719)
                      ...+++ ++++.+|++.-
T Consensus       108 ~k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             cccCCcchhhhccCcchH
Confidence            677788 88888888643

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=81.28  E-value=0.87  Score=27.94  Aligned_cols=20  Identities=35%  Similarity=0.972  Sum_probs=15.7

Q ss_pred             CCcccccccCCCCcccccccccccC
Q psy16110        104 FPYPCRCKKMSESQLAMDCDNVAFP  128 (719)
Q Consensus       104 ~~~~C~c~~~~~~~~~~~c~~~~l~  128 (719)
                      |+..|+|.     ...|+|++.+++
T Consensus         2 CP~~C~C~-----~~~V~C~~~~L~   21 (28)
T PF01462_consen    2 CPRPCTCS-----GLTVDCSGRGLT   21 (28)
T ss_dssp             SETTSEEE-----TTEEEETTSS-S
T ss_pred             cCCCCEec-----CCEeECCCCCCC
Confidence            56689998     578999998877

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=80.90  E-value=1  Score=26.92  Aligned_cols=18  Identities=44%  Similarity=0.656  Sum_probs=14.7

Q ss_pred             CCCcEEECCCCcCCCcCh
Q psy16110        669 SQLQIINLSFNRLEKLPE  686 (719)
Q Consensus       669 ~~L~~L~Ls~N~l~~i~~  686 (719)
                      ++|+.|++++|+|+++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            478888888888888886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	719
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		7e-19
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		6e-11
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		1e-14
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		1e-08
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		6e-14
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		3e-12
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		7e-14
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		9e-13
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		4e-12
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		7e-10
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		1e-13
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		5e-05
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		2e-13
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		5e-12
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		4e-09
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-13
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-10
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-07
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-13
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-10
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-07
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-13
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-06
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		5e-13
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		6e-13
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		2e-12
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		4e-12
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		6e-12
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-09
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		7e-12
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		6e-06
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		6e-06
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		9e-12
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		6e-06
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		1e-11
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		6e-06
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-11
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		7e-10
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		1e-11
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		3e-11
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		4e-09
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		6e-11
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		5e-08
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		8e-11
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		6e-04
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		1e-10
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		2e-07
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		1e-10
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		2e-10
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		2e-05
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		5e-10
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		1e-09
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		9e-06
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		2e-09
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		2e-05
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		2e-09
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		3e-05
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		5e-09
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		1e-05
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		5e-09
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		1e-05
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		2e-08
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		2e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		3e-08
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		3e-08
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		5e-08
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		5e-08
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		6e-08
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		7e-08
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		7e-08
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		6e-05
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		8e-08
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		9e-08
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		1e-07
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		1e-07
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		1e-07
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		1e-07
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		2e-07
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		2e-07
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		2e-07
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		3e-07
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		3e-07
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		3e-07
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		5e-07
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		4e-07
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		4e-07
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		5e-07
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		7e-07
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		7e-07
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		1e-06
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		3e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		6e-05
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		4e-06
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		5e-06
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		9e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		7e-06
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		2e-04
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		9e-06
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		1e-05
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		3e-04
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		9e-06
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-05
4eco_A	636	Crystal Structure Of A Hypothetical Protein (Bacegg		1e-05
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		4e-04
4ay9_X	350	Structure Of Follicle-Stimulating Hormone In Comple		3e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		4e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		5e-04
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-05
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		5e-05
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		4e-04
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		5e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		8e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-04
1xwd_C	252	Crystal Structure Of Human Follicle Stimulating Hor		2e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		5e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		6e-04
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		9e-04

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 146/317 (46%), Gaps = 23/317 (7%)
Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNG 312
           RF ++P      P   R+L +  NRI TL  D F S   LE + L  N ++ +E GAFN 
Sbjct: 22  RFVAVPE---GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN 78
Query: 313 LAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFS 372
           L  +  L L  NRL  +       G F GL+ +  L++  N++            I +  
Sbjct: 79  LFNLRTLGLRSNRLKLI-----PLGVFTGLSNLTKLDISENKIV-----------ILLDY 122
Query: 373 FFQDFQKLKSLDLNGNFLINLESTGLE--DTLDNLNVRDNQITTLSSSALNY-KLLTKLD 429
            FQD   LKSL++  N L+ +        ++L+ L +    +T++ + AL++   L  L 
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182
Query: 430 LSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ 489
           L H N+  +   +F  +  L  L +S   +L ++       L  L  L +    L ++P 
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPY 241
Query: 490 YQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRL 549
                L+ L++L L++N ++ I   M   LL L  + L    +  +   +  GL  ++ L
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301
Query: 550 DLSFNKLTTFKGDYFNT 566
           ++S N+LTT +   F++
Sbjct: 302 NVSGNQLTTLEESVFHS 318

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 126/284 (44%), Gaps = 22/284 (7%)
Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
           LDL  N +K L    F + P L  L L+ N  +S++  G F+ L  L  L L +  LK I
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLI 95
Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK 547
           P   F  L NL  L ++ N +  + + MF++L NL  L++ +N++V +   +  GL S++
Sbjct: 96  PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 548 RLDLSFNKLTTFKGD--------------YFNTKSKPNTSSXXXXXXXXXXXTYLFPSSF 593
           +L L    LT+   +              + N  +  + S            ++ +P   
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH-WPYLD 214
Query: 594 TIHSK------LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRL 647
           T+         L +L +        P   +  L YL+ ++LS N + TI+      L RL
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274
Query: 648 RKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT 691
           ++       +  +    F   + L+++N+S N+L  L E +F++
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 169/373 (45%), Gaps = 51/373 (13%)
Query: 204 SLNPIFSTSE--FHGLVNLRILDLSDNQIK-AIEEGILKGCDNLLELRMDHNRFTSIPSV 260
           SLN I   +E  F  L +L+ L +        I     +G  +L+ L++D+N+F  + + 
Sbjct: 38  SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97
Query: 261 SLNGPRALRILSMAYNRI--GTLKADSFLSQRWLERIILRGNRLTTIEGGAFN-GLAKIH 317
           + NG   L +L++    +    L  + F     LE ++LR N +  I+  +F   + + H
Sbjct: 98  AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157
Query: 318 ILNLGYNRLNKLNSD---TFQGGAFN-------GLAKIHILNLGYNRLNKLNSDTFQGTH 367
           +L+L +N++  +  +    FQG  F         L  ++   LG+ +      + F+ T 
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC----GNPFKNTS 213
Query: 368 ITIFS-------------FFQDFQ--KLKSLDLNGNFLI-------------NLESTGLE 399
           IT                FF      K++SL L+ ++ +             N    GLE
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273
Query: 400 DT-LDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
            + +   ++  ++I  L  S   ++  L +L L+ N + +++  AF  +  LL LNLS+N
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333
Query: 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK 517
             L S+    F+ L KLEVLDL+   ++++    F  L NLK L L  N L  +P+ +F 
Sbjct: 334 -FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392
Query: 518 NLLNLTYLDLSNN 530
            L +L  + L  N
Sbjct: 393 RLTSLQKIWLHTN 405

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 172/441 (39%), Gaps = 92/441 (20%)
Query: 265 PRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT---TIEGGAFNGLAKIHILNL 321
           P  +  + ++ N I  L   SF   R  +   L+  + T    I    F GL+ + IL L
Sbjct: 29  PAHVNYVDLSLNSIAELNETSF--SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86
Query: 322 GYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLK 381
            YN+  +L +     GAFNGLA + +L L    L+                         
Sbjct: 87  DYNQFLQLET-----GAFNGLANLEVLTLTQCNLD------------------------- 116
Query: 382 SLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA--LNYKLLTKLDLSHNNLKELE 439
              L+GNF   L S      L+ L +RDN I  +  ++  LN +    LDL+ N +K + 
Sbjct: 117 GAVLSGNFFKPLTS------LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170
Query: 440 PTAFTNVP----TLLHLNLSRNAHLSSLPVGG---FDPLKKLEV--LDLAATGLK-SIPQ 489
                N      TLL L+      ++   +G     +P K   +  LDL+  G K S+ +
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230
Query: 490 YQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRL 549
             FD +             T+I  ++  N  N+               GS +G  + K  
Sbjct: 231 RFFDAIAG-----------TKIQSLILSNSYNM---------------GSSFGHTNFKDP 264
Query: 550 DLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKF 609
           D +F    TFKG           S              L  S F+  + L+ L LA N+ 
Sbjct: 265 D-NF----TFKG--------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311
Query: 610 NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSS 669
           N        GL++L +++LS N L +ID   +  L +L         I A+ +  F    
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371
Query: 670 QLQIINLSFNRLEKLPERLFN 690
            L+ + L  N+L+ +P+ +F+
Sbjct: 372 NLKELALDTNQLKSVPDGIFD 392

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 123/262 (46%), Gaps = 39/262 (14%)
Query: 269 RILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNK 328
           R+L++  N+I  +K +SF   R LE + L  N + TIE GAFNGLA ++ L L  NRL  
Sbjct: 67  RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT- 125
Query: 329 LNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN 388
               T   GAF  L+K+  L L  N +  + S  F                L+ LDL   
Sbjct: 126 ----TIPNGAFVYLSKLKELWLRNNPIESIPSYAFN-----------RIPSLRRLDLGEL 170
Query: 389 FLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPT 448
             ++  S G  + L NL                      L+L+  NL+E+     T +  
Sbjct: 171 KRLSYISEGAFEGLSNLRY--------------------LNLAMCNLREIP--NLTPLIK 208
Query: 449 LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHL 508
           L  L+LS N HLS++  G F  L  L+ L +  + ++ I +  FD L +L  + LAHN+L
Sbjct: 209 LDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Query: 509 TEIPEMMFKNLLNLTYLDLSNN 530
           T +P  +F  L +L  + L +N
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHN 289

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 106/264 (40%), Gaps = 34/264 (12%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
           +K+     NL+E+     TN   L   NL  N  +  + V  F  L+ LE+L L+   ++
Sbjct: 46  SKVICVRKNLREVPDGISTNTRLL---NLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIR 101
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
           +I    F+ L NL  L L  N LT IP   F  L  L  L L NN I ++   +   +PS
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161
Query: 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLA 605
           ++RLDL   K                              +Y+   +F   S L+ L LA
Sbjct: 162 LRRLDLGELK----------------------------RLSYISEGAFEGLSNLRYLNLA 193
Query: 606 FNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCF 665
                  P   +  L  L E+DLS N L  I    +  L  L+K       I  I    F
Sbjct: 194 MCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251
Query: 666 FNSSQLQIINLSFNRLEKLPERLF 689
            N   L  INL+ N L  LP  LF
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLF 275

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 13/194 (6%)
Query: 162 SDIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
           S+IP   ++LD   N L  L  K F  HR  L +LRL      D+         F  L N
Sbjct: 33  SNIPADTKKLDLQSNKLSSLPSKAF--HR--LTKLRLL--YLNDNKLQTLPAGIFKELKN 86
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
           L  L ++DN+++A+  G+     NL ELR+D N+  S+P    +    L  LS+ YN + 
Sbjct: 87  LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
           +L    F     L+ + L  N+L  +  GAF+ L ++  L L  N+L ++       GAF
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-----GAF 201
Query: 340 NGLAKIHILNLGYN 353
           + L K+ +L L  N
Sbjct: 202 DSLEKLKMLQLQEN 215

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 84/177 (47%), Gaps = 4/177 (2%)
Query: 381 KSLDLNGNFLINLESTGLE--DTLDNLNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKE 437
           K LDL  N L +L S        L  L + DN++ TL +      K L  L ++ N L+ 
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 438 LEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLN 497
           L    F  +  L  L L RN  L SLP   FD L KL  L L    L+S+P+  FD+L +
Sbjct: 100 LPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 498 LKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
           LK L L +N L  +PE  F  L  L  L L NN +  +  G+   L  +K L L  N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 90/205 (43%), Gaps = 30/205 (14%)
Query: 427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKS 486
           KLDL  N L  L   AF  +  L  L L+ N  L +LP G F  LK LE L +    L++
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 487 IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
           +P   FD+L+NL  L L  N L  +P  +F +L  LTYL L  N + +L  G    L S+
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAF 606
           K L L  N+L          K  P                     +F   ++LKTLKL  
Sbjct: 160 KELRLYNNQL----------KRVPE-------------------GAFDKLTELKTLKLDN 190
Query: 607 NKFNYFPKELILGLSYLQEIDLSNN 631
           N+    P+     L  L+ + L  N
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQEN 215

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 29/203 (14%)
Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536
           LDL +  L S+P   F  L  L+ L L  N L  +P  +FK L NL  L +++N +  L 
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 537 VGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIH 596
           +G    L ++  L L  N+L +                             L P  F   
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKS-----------------------------LPPRVFDSL 132
Query: 597 SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXX 656
           +KL  L L +N+    PK +   L+ L+E+ L NNQLK + +  +  L  L+        
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 657 IDAISETCFFNSSQLQIINLSFN 679
           +  + E  F +  +L+++ L  N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
           L L  N L ++  +A   +  L +L L+ N  L SLP G FD L  L+ L L    L+S+
Sbjct: 68  LALGGNKLHDI--SALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK 547
           P   FD+L NL YL L HN L  +P+ +F  L NLT LDL NN + +L  G    L  +K
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLK 184
Query: 548 RLDLSFNKLTTFKGDYFN 565
           +L L+ N+L +     F+
Sbjct: 185 QLSLNDNQLKSVPDGVFD 202

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 33/182 (18%)
Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543
           +KS+   Q+  L N++YL L  N L +I  +  K L NLTYL L+ N + +L  G    L
Sbjct: 53  IKSVQGIQY--LPNVRYLALGGNKLHDISAL--KELTNLTYLILTGNQLQSLPNGVFDKL 108
Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLK 603
            ++K L L  N+L +     F+  +                 TYL+              
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTN---------------LTYLY-------------- 139
Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISET 663
           L  N+    PK +   L+ L  +DL NNQL+++ +  +  L +L++       + ++ + 
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDG 199
Query: 664 CF 665
            F
Sbjct: 200 VF 201

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 167/384 (43%), Gaps = 71/384 (18%)
Query: 213 EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILS 272
           EF G  +LR LDLS N +K    G  +    L  L +++ +           P     L 
Sbjct: 166 EFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQL---------NPHLTEKLC 216
Query: 273 MAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHI--LNLGYNRLNKLN 330
                         LS   ++ + L  N+L       F+GL   ++  L+L YN L+ + 
Sbjct: 217 WE------------LSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVG 264
Query: 331 SDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG-THITIFSFFQDFQKLKSLDLNGNF 389
           +     G+F+ L  +  L+L YN + +L+  +F G +++   S  + F K +S+ L  + 
Sbjct: 265 N-----GSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTK-QSVSLASHP 318
Query: 390 LINLESTGLEDTLDNLNVRDNQITTLSSS------ALNYKLLTKLDLSHNNLKELEPTAF 443
            I+  S      L+ LN+ DN I +  S+      +L Y  L+K   S   L      + 
Sbjct: 319 NIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSL 378
Query: 444 TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ----YQFDELLNL- 498
            + P LL LNL++N H+S +  G F  L +L +LDL   GL  I Q     ++  L N+ 
Sbjct: 379 AHSP-LLTLNLTKN-HISKIANGTFSWLGQLRILDL---GLNEIEQKLSGQEWRGLRNIF 433
Query: 499 -------KYLCLAHNHLTEIPEMM------------------FKNLLNLTYLDLSNNNIV 533
                  KYL L+ +    +P +                   F+ L NLT LDLSNNNI 
Sbjct: 434 EIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIA 493
Query: 534 NLRVGSLYGLPSMKRLDLSFNKLT 557
           N+    L GL +++ LD   N L 
Sbjct: 494 NINEDLLEGLENLEILDFQHNNLA 517

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 121/478 (25%), Positives = 205/478 (42%), Gaps = 36/478 (7%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
           L ILD   N I  +E  + +    L  L + HN  + I   +      L  L +  N I 
Sbjct: 51  LAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIH 110
Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
            +K++ F +Q+ L ++ L  N L++ + G    L  +  L L  N++  L S+  +   F
Sbjct: 111 KIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELE---F 167
Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE 399
            G + +  L+L  N L + +   FQ    TI   F     L +  LN +    L      
Sbjct: 168 LGNSSLRKLDLSSNPLKEFSPGCFQ----TIGKLFALL--LNNAQLNPHLTEKLCWELSN 221
Query: 400 DTLDNLNVRDNQITTLSS---SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSR 456
            ++ NL++ +NQ+   S    S L +  LT+LDLS+NNL ++   +F+ +P+L +L+L  
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 457 NAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMF 516
           N ++  L    F  L  L  L L     K             + + LA +    I +  F
Sbjct: 282 N-NIQRLSPRSFYGLSNLRYLSLKRAFTK-------------QSVSLASH--PNIDDFSF 325
Query: 517 KNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS--FNKLTTFKGDYFNTKSKPNTSS 574
           + L  L YL++ +NNI + +  +  GL S+K L LS  F  L T   + F + +    S 
Sbjct: 326 QWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAH---SP 382
Query: 575 XXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNY-FPKELILGLSYLQEIDLSNNQL 633
                      + +   +F+   +L+ L L  N+       +   GL  + EI LS N+ 
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
Query: 634 KTIDDYDYGYLPRLRKXXXXXXXIDA--ISETCFFNSSQLQIINLSFNRLEKLPERLF 689
             +    +  +P L++       +    IS + F     L I++LS N +  + E L 
Sbjct: 443 LQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLL 500

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 114/280 (40%), Gaps = 31/280 (11%)
Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
           +T L+L+HN L+ L PT FT    L  L+   N+ +S L       L  L+VL+L    L
Sbjct: 27  ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNS-ISKLEPELCQILPLLKVLNLQHNEL 85
Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS----- 539
             I    F    NL  L L  N + +I    FKN  NL  LDLS+N + + ++G+     
Sbjct: 86  SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLE 145
Query: 540 ---------------------LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXX 578
                                  G  S+++LDLS N L  F    F T  K         
Sbjct: 146 NLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNA 205
Query: 579 XXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSY--LQEIDLSNNQLKTI 636
                    L       ++ ++ L LA N+     +    GL +  L ++DLS N L  +
Sbjct: 206 QLNPHLTEKLCWE--LSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDV 263
Query: 637 DDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINL 676
            +  + YLP LR        I  +S   F+  S L+ ++L
Sbjct: 264 GNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 381 KSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELE 439
           K +D  G  L ++ S G+    + L+++   + TLS +       LT L+L +N L+ L 
Sbjct: 17  KEVDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK 499
              F ++  L  L L+ N  L+SLP+G FD L +L+ L L    LKS+P   FD L  LK
Sbjct: 76  AGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134
Query: 500 YLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
            L L  N L  IP   F  L NL  L LS N + ++  G+   L  ++ + L  N+
Sbjct: 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKS 486
           KLDL    L  L    F  +  L  LNL  N  L +L  G FD L +L  L LA   L S
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 487 IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
           +P   FD L  L  L L  N L  +P  +F  L  L  L L+ N + ++  G+   L ++
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 547 KRLDLSFNKLTTFKGDYFNTKSKPNT 572
           + L LS N+L +     F+   K  T
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQT 183

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 32/175 (18%)
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
           E LDL +TGL ++    F  L  L +L L +N L  +   +F +L  L  L L+NN + +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFT 594
           L +G    L  + +L L  N+L          KS P+                     F 
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQL----------KSLPS-------------------GVFD 128
Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
             +KLK L+L  N+    P      L+ LQ + LS NQL+++    +G   RL K
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV---PHGAFDRLGK 180

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 381 KSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELE 439
           K +D  G  L ++ S G+    + L+++   + TLS +       LT L+L +N L+ L 
Sbjct: 17  KEVDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK 499
              F ++  L  L L+ N  L+SLP+G FD L +L+ L L    LKS+P   FD L  LK
Sbjct: 76  AGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134
Query: 500 YLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
            L L  N L  IP   F  L NL  L LS N + ++  G+   L  ++ + L  N+
Sbjct: 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKS 486
           KLDL    L  L    F  +  L  LNL  N  L +L  G FD L +L  L LA   L S
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 487 IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
           +P   FD L  L  L L  N L  +P  +F  L  L  L L+ N + ++  G+   L ++
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 547 KRLDLSFNKLTTFKGDYFNTKSKPNT 572
           + L LS N+L +     F+   K  T
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQT 183

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 32/175 (18%)
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
           E LDL +TGL ++    F  L  L +L L +N L  +   +F +L  L  L L+NN + +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFT 594
           L +G    L  + +L L  N+L          KS P+                     F 
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQL----------KSLPS-------------------GVFD 128
Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
             +KLK L+L  N+    P      L+ LQ + LS NQL+++    +G   RL K
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV---PHGAFDRLGK 180

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
           L L  N L ++  +A   +  L +L L+ N  L SLP G FD L  L+ L L    L+S+
Sbjct: 68  LALGGNKLHDI--SALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK 547
           P   FD+L NL YL LAHN L  +P+ +F  L NLT LDLS N + +L  G    L  +K
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184
Query: 548 RLDLSFNKLTTFKGDYFN 565
            L L  N+L +     F+
Sbjct: 185 DLRLYQNQLKSVPDGVFD 202

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 33/196 (16%)
Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543
           +KS+   Q+  L N++YL L  N L +I  +  K L NLTYL L+ N + +L  G    L
Sbjct: 53  IKSVQGIQY--LPNVRYLALGGNKLHDISAL--KELTNLTYLILTGNQLQSLPNGVFDKL 108
Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLK 603
            ++K L L  N+L +     F+                               + L  L 
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDK-----------------------------LTNLTYLN 139
Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISET 663
           LA N+    PK +   L+ L E+DLS NQL+++ +  +  L +L+        + ++ + 
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199
Query: 664 CFFNSSQLQIINLSFN 679
            F   + LQ I L  N
Sbjct: 200 VFDRLTSLQYIWLHDN 215

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 105/237 (44%), Gaps = 30/237 (12%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
            G+      + +  N+I+ + +++    + LT L L  N L  ++  AFT +  L  L+L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
           S NA L S+    F  L +L  L L   GL+ +    F  L  L+YL L  N L  +P+ 
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 515 MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSS 574
            F++L NLT+L L  N I ++   +  GL S+ RL L  N++                  
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV------------------ 189
Query: 575 XXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
                       ++ P +F    +L TL L  N  +  P E +  L  LQ + L++N
Sbjct: 190 -----------AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 105/237 (44%), Gaps = 30/237 (12%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
            G+      + +  N+I+ + +++    + LT L L  N L  ++  AFT +  L  L+L
Sbjct: 27  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 86
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
           S NA L S+    F  L +L  L L   GL+ +    F  L  L+YL L  N L  +P+ 
Sbjct: 87  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 146
Query: 515 MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSS 574
            F++L NLT+L L  N I ++   +  GL S+ RL L  N++                  
Sbjct: 147 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV------------------ 188
Query: 575 XXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
                       ++ P +F    +L TL L  N  +  P E +  L  LQ + L++N
Sbjct: 189 -----------AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 157/390 (40%), Gaps = 63/390 (16%)
Query: 207 PIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPR 266
           P    + F  L+NL  LDL+  QI  I E   +    L  L +  N    +   +L+GP+
Sbjct: 46  PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105
Query: 267 ALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
           AL+ L      I ++      +Q+ LE + L  N +++I+        K+ +L+   N +
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165
Query: 327 N------------------KLNSDTFQG---GAFNGLAKIHILNLGYNR-----LNKLNS 360
           +                   LN +   G   GAF+  A    LN G  +        L +
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKN 224
Query: 361 DTFQGTHITIFSFFQD-------FQKL-----KSLDLNGNFLINLESTGLE--DTLDNLN 406
            T Q   +  F    D       F+ L     +S++L  ++  N+ S        L  L+
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284
Query: 407 VRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVG 466
           +    ++ L S  +    L KL LS N  + L   + +N P+L HL++  N     L  G
Sbjct: 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344
Query: 467 GFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLD 526
             + L+ L  LDL+   +++                      ++   +  +NL +L  L+
Sbjct: 345 CLENLENLRELDLSHDDIET----------------------SDCCNLQLRNLSHLQSLN 382
Query: 527 LSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
           LS N  ++L+  +    P ++ LDL+F +L
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 30/237 (12%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
           TG+  +   + +  N+I+ + +++  + + LT L L  N L  ++  AFT +  L  L+L
Sbjct: 27  TGIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDL 86
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
           S NA L  +    F  L  L  L L   GL+ +    F  L  L+YL L  N+L  +P+ 
Sbjct: 87  SDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDN 146
Query: 515 MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSS 574
            F++L NLT+L L  N I ++   +  GL S+ RL L  N +                  
Sbjct: 147 TFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVAR---------------- 190
Query: 575 XXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
                        + P +F    +L TL L  N  +  P E+++ L  LQ + L++N
Sbjct: 191 -------------VHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 115/262 (43%), Gaps = 39/262 (14%)
Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
           VN R L+L +N I+ I     K   +L  L++  N    I   + NG  +L  L +  NR
Sbjct: 35  VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNR 94
Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
           + T+   +F     L  + LR N + +I   AFN +  +  L+LG   L +L  +     
Sbjct: 95  LTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG--ELKRL--EYISEA 150
Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
           AF GL  +  LNLG   L  + + T                +L+ L+L+GN L       
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIPNLT-------------ALVRLEELELSGNRL------- 190
Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
             D      +R      L+S       L KL L H  +  +E  AF ++ +L  LNLS N
Sbjct: 191 --DL-----IRPGSFQGLTS-------LRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 458 AHLSSLPVGGFDPLKKLEVLDL 479
            +L SLP   F PL +LE + L
Sbjct: 237 -NLMSLPHDLFTPLHRLERVHL 257

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 98/239 (41%), Gaps = 31/239 (12%)
Query: 451 HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
           +LNL  N+ +  +    F  L+ LE+L L+   ++ I    F+ L +L  L L  N LT 
Sbjct: 39  YLNLQENS-IQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 511 IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
           +P   F+ L  L  L L NN I ++   +   +PS++RLDL   K               
Sbjct: 98  VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK--------------- 142
Query: 571 NTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSN 630
                           Y+  ++F     L+ L L        P   +  L  L+E++LS 
Sbjct: 143 -------------RLEYISEAAFEGLVNLRYLNLGMCNLKDIPN--LTALVRLEELELSG 187
Query: 631 NQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
           N+L  I    +  L  LRK       +  I    F +   L+ +NLS N L  LP  LF
Sbjct: 188 NRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLF 246

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 164/383 (42%), Gaps = 44/383 (11%)
Query: 210 STSEFHGL--VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRA 267
           S + F GL   NL +LDLS N +  +          L    +++N    + S SL+G   
Sbjct: 243 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 302
Query: 268 LRILSMAYN------RIGTL-KADSFLSQRWL---ERIILRGNRLTTIEGGAFNGLAKIH 317
           +R L++  +       + +L K D F S +WL   E + +  N +  I+   F GL  + 
Sbjct: 303 VRYLNLKRSFTKQSISLASLPKIDDF-SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 361
Query: 318 ILNLG--YNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQ 375
            L+L   +  L  L ++TF   A    + +HILNL  N+++K+ SD F            
Sbjct: 362 YLSLSNSFTSLRTLTNETFVSLAH---SPLHILNLTKNKISKIESDAFSW---------- 408
Query: 376 DFQKLKSLDLN----GNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLS 431
               L+ LDL     G  L   E  GLE+  +     +  +    +S      L +L L 
Sbjct: 409 -LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 467
Query: 432 HNNLKELE--PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI-- 487
              LK ++  P+ F  +  L  L+LS N   +       + L+KLE+LDL    L  +  
Sbjct: 468 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-DDMLEGLEKLEILDLQHNNLARLWK 526
Query: 488 ------PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541
                 P Y    L +L  L L  N   EIP  +FK+L  L  +DL  NN+  L      
Sbjct: 527 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 586
Query: 542 GLPSMKRLDLSFNKLTTFKGDYF 564
              S+K L+L  N +T+ +   F
Sbjct: 587 NQVSLKSLNLQKNLITSVEKKVF 609

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 134/294 (45%), Gaps = 51/294 (17%)
Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
           L  N+L  +    F   +++  L++G+N ++KL  +  Q      L  + +LNL +N L+
Sbjct: 37  LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ-----KLPMLKVLNLQHNELS 91
Query: 357 KLNSDTFQ-GTHITIFSFFQD-FQKLK-----------SLDLNGNFLINLESTGLEDTL- 402
           +L+  TF   T++T      +  QK+K           +LDL+ N    L ST L   + 
Sbjct: 92  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN---GLSSTKLGTQVQ 148
Query: 403 ----DNLNVRDNQITTLSSSALNY---KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
                 L + +N+I  L S  L+      L KL+LS N +KE  P  F  +  L  L L+
Sbjct: 149 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 208
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLK--SIPQYQFD----------ELLNLKYLCL 503
            N  L      G    +KL  L+LA T ++  S+   Q            +  NL  L L
Sbjct: 209 -NVQL------GPSLTEKL-CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 260
Query: 504 AHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDL--SFNK 555
           ++N+L  +    F  L  L Y  L  NNI +L   SL+GL +++ L+L  SF K
Sbjct: 261 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 314

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 110/255 (43%), Gaps = 20/255 (7%)
Query: 405 LNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
           LN+  NQ+  L ++    Y  LT LD+  N + +LEP     +P L  LNL  N  LS L
Sbjct: 35  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQL 93
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
               F     L  L L +  ++ I    F +  NL  L L+HN L+         L NL 
Sbjct: 94  SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 153
Query: 524 YLDLSNNNIVNLRVGSL--YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXX 581
            L LSNN I  L+   L  +   S+K+L+LS N++  F    F+   +            
Sbjct: 154 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR--------LFGL 205
Query: 582 XXXXTYLFPSSFT------IHSKLKTLKLAFNKFNYFPKELILGLSY--LQEIDLSNNQL 633
                 L PS          ++ ++ L L+ ++ +       LGL +  L  +DLS N L
Sbjct: 206 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 265
Query: 634 KTIDDYDYGYLPRLR 648
             + +  + +LP+L 
Sbjct: 266 NVVGNDSFAWLPQLE 280

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 164/383 (42%), Gaps = 44/383 (11%)
Query: 210 STSEFHGL--VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRA 267
           S + F GL   NL +LDLS N +  +          L    +++N    + S SL+G   
Sbjct: 248 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 307
Query: 268 LRILSMAYN------RIGTL-KADSFLSQRWL---ERIILRGNRLTTIEGGAFNGLAKIH 317
           +R L++  +       + +L K D F S +WL   E + +  N +  I+   F GL  + 
Sbjct: 308 VRYLNLKRSFTKQSISLASLPKIDDF-SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 366
Query: 318 ILNLG--YNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQ 375
            L+L   +  L  L ++TF   A    + +HILNL  N+++K+ SD F            
Sbjct: 367 YLSLSNSFTSLRTLTNETFVSLAH---SPLHILNLTKNKISKIESDAFSW---------- 413
Query: 376 DFQKLKSLDLN----GNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLS 431
               L+ LDL     G  L   E  GLE+  +     +  +    +S      L +L L 
Sbjct: 414 -LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 472
Query: 432 HNNLKELE--PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI-- 487
              LK ++  P+ F  +  L  L+LS N   +       + L+KLE+LDL    L  +  
Sbjct: 473 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-DDMLEGLEKLEILDLQHNNLARLWK 531
Query: 488 ------PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541
                 P Y    L +L  L L  N   EIP  +FK+L  L  +DL  NN+  L      
Sbjct: 532 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 591
Query: 542 GLPSMKRLDLSFNKLTTFKGDYF 564
              S+K L+L  N +T+ +   F
Sbjct: 592 NQVSLKSLNLQKNLITSVEKKVF 614

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 110/255 (43%), Gaps = 20/255 (7%)
Query: 405 LNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
           LN+  NQ+  L ++    Y  LT LD+  N + +LEP     +P L  LNL  N  LS L
Sbjct: 40  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQL 98
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
               F     L  L L +  ++ I    F +  NL  L L+HN L+         L NL 
Sbjct: 99  SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 158
Query: 524 YLDLSNNNIVNLRVGSL--YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXX 581
            L LSNN I  L+   L  +   S+K+L+LS N++  F    F+   +            
Sbjct: 159 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR--------LFGL 210
Query: 582 XXXXTYLFPSSFT------IHSKLKTLKLAFNKFNYFPKELILGLSY--LQEIDLSNNQL 633
                 L PS          ++ ++ L L+ ++ +       LGL +  L  +DLS N L
Sbjct: 211 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 270
Query: 634 KTIDDYDYGYLPRLR 648
             + +  + +LP+L 
Sbjct: 271 NVVGNDSFAWLPQLE 285

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 164/383 (42%), Gaps = 44/383 (11%)
Query: 210 STSEFHGL--VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRA 267
           S + F GL   NL +LDLS N +  +          L    +++N    + S SL+G   
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297
Query: 268 LRILSMAYN------RIGTL-KADSFLSQRWL---ERIILRGNRLTTIEGGAFNGLAKIH 317
           +R L++  +       + +L K D F S +WL   E + +  N +  I+   F GL  + 
Sbjct: 298 VRYLNLKRSFTKQSISLASLPKIDDF-SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356
Query: 318 ILNLG--YNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQ 375
            L+L   +  L  L ++TF   A    + +HILNL  N+++K+ SD F            
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAH---SPLHILNLTKNKISKIESDAFSW---------- 403
Query: 376 DFQKLKSLDLN----GNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLS 431
               L+ LDL     G  L   E  GLE+  +     +  +    +S      L +L L 
Sbjct: 404 -LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462
Query: 432 HNNLKELE--PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI-- 487
              LK ++  P+ F  +  L  L+LS N   +       + L+KLE+LDL    L  +  
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-DDMLEGLEKLEILDLQHNNLARLWK 521
Query: 488 ------PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541
                 P Y    L +L  L L  N   EIP  +FK+L  L  +DL  NN+  L      
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581
Query: 542 GLPSMKRLDLSFNKLTTFKGDYF 564
              S+K L+L  N +T+ +   F
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVF 604

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 110/255 (43%), Gaps = 20/255 (7%)
Query: 405 LNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
           LN+  NQ+  L ++    Y  LT LD+  N + +LEP     +P L  LNL  N  LS L
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQL 88
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
               F     L  L L +  ++ I    F +  NL  L L+HN L+         L NL 
Sbjct: 89  SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148
Query: 524 YLDLSNNNIVNLRVGSL--YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXX 581
            L LSNN I  L+   L  +   S+K+L+LS N++  F    F+   +            
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR--------LFGL 200
Query: 582 XXXXTYLFPSSFT------IHSKLKTLKLAFNKFNYFPKELILGLSY--LQEIDLSNNQL 633
                 L PS          ++ ++ L L+ ++ +       LGL +  L  +DLS N L
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260
Query: 634 KTIDDYDYGYLPRLR 648
             + +  + +LP+L 
Sbjct: 261 NVVGNDSFAWLPQLE 275

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 116/262 (44%), Gaps = 39/262 (14%)
Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
           VN R L+L +N I+ I     K   +L  L++  N    I   + NG  +L  L +  NR
Sbjct: 35  VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNR 94
Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
           + T+   +F     L  + LR N + +I   AFN +  +  L+LG   L +L  +     
Sbjct: 95  LTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG--ELKRL--EYISEA 150
Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
           AF GL  +  LNLG   L  + + T                +L+ L+L+GN L +L    
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIPNLT-------------ALVRLEELELSGNRL-DL---- 192
Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
                    +R      L+S       L KL L H  +  +E  AF ++ +L  LNLS N
Sbjct: 193 ---------IRPGSFQGLTS-------LRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 458 AHLSSLPVGGFDPLKKLEVLDL 479
            +L SLP   F PL +LE + L
Sbjct: 237 -NLMSLPHDLFTPLHRLERVHL 257

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 98/239 (41%), Gaps = 31/239 (12%)
Query: 451 HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
           +LNL  N+ +  +    F  L+ LE+L L+   ++ I    F+ L +L  L L  N LT 
Sbjct: 39  YLNLQENS-IQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 511 IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
           +P   F+ L  L  L L NN I ++   +   +PS++RLDL   K               
Sbjct: 98  VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK--------------- 142
Query: 571 NTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSN 630
                           Y+  ++F     L+ L L        P   +  L  L+E++LS 
Sbjct: 143 -------------RLEYISEAAFEGLVNLRYLNLGMCNLKDIPN--LTALVRLEELELSG 187
Query: 631 NQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
           N+L  I    +  L  LRK       +  I    F +   L+ +NLS N L  LP  LF
Sbjct: 188 NRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLF 246

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 111/453 (24%), Positives = 185/453 (40%), Gaps = 70/453 (15%)
Query: 163 DIPIRRL---DFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSL---------NPIFS 210
           D P R L   DF  NA+  +S +     R   Q + L+ N  G+++         + IF 
Sbjct: 146 DFPARNLKVLDFQNNAIHYISRE---DMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQ 202
Query: 211 TSEFHGLVNLRIL------------------DLSDNQIKAIEEGILKG-CDNLLE-LRMD 250
           +  F G  NL ++                  D+ D  I +    +LKG C+  +E L + 
Sbjct: 203 SLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISS---AMLKGLCEMSVESLNLQ 259
Query: 251 HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGN---RLTTIEG 307
            +RF+ I S +      L+ L +    +  L +        L++++L  N   +L  I  
Sbjct: 260 EHRFSDISSTTFQCFTQLQELDLTATHLKGLPS-GMKGLNLLKKLVLSVNHFDQLCQISA 318
Query: 308 GAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTH 367
             F  L  ++I       + KL+      G    L  +  L+L +N +   +  + Q   
Sbjct: 319 ANFPSLTHLYI----RGNVKKLHLGV---GCLEKLGNLQTLDLSHNDIEASDCCSLQ--- 368
Query: 368 ITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA-----LNY 422
                  ++   L++L+L+ N  + L+S   ++    L + D   T L  +A      N 
Sbjct: 369 ------LKNLSHLQTLNLSHNEPLGLQSQAFKEC-PQLELLDLAFTRLHINAPQSPFQNL 421
Query: 423 KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLK---KLEVLDL 479
             L  L+L++  L          +P L HLNL  N H     +   + L+    LEVL L
Sbjct: 422 HFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGN-HFQDGTITKTNLLQTVGSLEVLIL 480
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
           ++ GL SI Q  F  L  + ++ L+HN LT        +L  + YL+L+ N+I  +    
Sbjct: 481 SSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRL 539
Query: 540 LYGLPSMKRLDLSFNKL-TTFKGDYFNTKSKPN 571
           L  L     ++LS N L  T    +F T  K N
Sbjct: 540 LPILSQQSTINLSHNPLDCTCSNIHFLTWYKEN 572

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 135/298 (45%), Gaps = 37/298 (12%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
           ++ L+ + N + +++D+ F    D LQ L L+ NL G+       +S F+GL  +  +DL
Sbjct: 292 LKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGE-----LYSSNFYGLPKVAYIDL 345
Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFT------SIPSVSLNGPRAL---------RI 270
             N I  I++   K  + L  L +  N  T      SIP + L+G + +          +
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL 405
Query: 271 LSMAYNRIGTLKADSFLSQR-WLERIILRGNRLTTIEGGAF-NGLAKIHILNLGYNRLNK 328
           + ++ NR+  L    FL +   L+ +IL  NR ++  G    +    +  L LG N L  
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465
Query: 329 LNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN 388
                     F GL+ + +L L +N LN L    F  +H+T          L+ L LN N
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF--SHLT---------ALRGLSLNSN 514
Query: 389 FLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN-LKELEPTAFTN 445
            L  L    L   L+ L++  NQ+  L+ +   +  L+ LD++HN  + E E + F N
Sbjct: 515 RLTVLSHNDLPANLEILDISRNQL--LAPNPDVFVSLSVLDITHNKFICECELSTFIN 570

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 119/493 (24%), Positives = 207/493 (41%), Gaps = 79/493 (16%)
Query: 202 GDSLNPIFSTSE-FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELR----------MD 250
           G    P+    E F  L NLRILDL  ++I  +     +G  +L ELR          + 
Sbjct: 56  GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK 115
Query: 251 HNRFTSIPS-----VSLNGPRALRILSMAYNRIGTLKADSF---------------LSQR 290
              F ++ +     +S N  R+L  L  ++ ++ +LK+  F               L  +
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSL-YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174
Query: 291 WLERIILRGN----RLTTIEGGAFNGLAK--IHILNLGYNRLNKLNSDTFQGG-----AF 339
            L    L  N    R++   G   N      + IL++  N      +  F        AF
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234
Query: 340 NGLAKIHIL--NLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
           + +   HI+    G++ +   + +TF G   +          ++ LDL+  F+ +L S  
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARS---------SVRHLDLSHGFVFSLNSRV 285
Query: 398 LE--DTLDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
            E    L  LN+  N+I  ++  A  Y L  L  L+LS+N L EL  + F  +P + +++
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDL---AATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
           L +N H++ +    F  L+KL+ LDL   A T +  IP        ++  + L+ N L  
Sbjct: 345 LQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP--------SIPDIFLSGNKLVT 395
Query: 511 IPEM-MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSK 569
           +P++ +  NL++L+   L N +I+      L  +P ++ L L+ N+ ++  GD       
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYF----LLRVPHLQILILNQNRFSSCSGDQ-TPSEN 450
Query: 570 PNTSSXX--XXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID 627
           P+                T L    F   S L+ L L  N  N  P  +   L+ L+ + 
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 628 LSNNQLKTIDDYD 640
           L++N+L  +   D
Sbjct: 511 LNSNRLTVLSHND 523

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
           TG+      L++  N + +L +   +    LT+L L  N L+ L    F  + +L +LNL
Sbjct: 24  TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
           S N  L SLP G FD L +L+ L L    L+S+P   FD+L  LK L L  N L  +P+ 
Sbjct: 84  STN-QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142
Query: 515 MFKNLLNLTYLDLSNN 530
           +F  L +L Y+ L +N
Sbjct: 143 VFDRLTSLQYIWLHDN 158

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%)
Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536
           LDL    LKS+P   FDEL +L  L L  N L  +P  +F  L +LTYL+LS N + +L 
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 537 VGSLYGLPSMKRLDLSFNKLTTFKGDYFN 565
            G    L  +K L L+ N+L +     F+
Sbjct: 93  NGVFDKLTQLKELALNTNQLQSLPDGVFD 121

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 430 LSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ 489
           L  N + +LEP  F ++  L  L L  N  L +LPVG FD L +L VLDL    L  +P 
Sbjct: 47  LHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
Query: 490 YQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
             FD L++LK L +  N LTE+P  + + L +LT+L L  N + ++  G+   L S+
Sbjct: 106 AVFDRLVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 34/66 (51%)
Query: 492 FDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDL 551
           FD L+NLK L L  N L  +P  +F +L  LT LDL  N +  L       L  +K L +
Sbjct: 60  FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119
Query: 552 SFNKLT 557
             NKLT
Sbjct: 120 CCNKLT 125

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 113/245 (46%), Gaps = 21/245 (8%)
Query: 265 PRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
           P   R L++  N I  ++AD+F     LE + L  N +  IE GAFNGLA ++ L L  N
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133
Query: 325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLD 384
            L  + S     GAF  L+K+  L L  N +  + S  F      +     + +KL+ + 
Sbjct: 134 WLTVIPS-----GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188
Query: 385 LNGNF--LINLESTGLEDTLDNLNVRD-NQITTLSSSALNYKLLTKLDLSHNNLKELEPT 441
             G F  L NL+       L   N++D   +T L         L +L++S N+  E+ P 
Sbjct: 189 -EGAFEGLFNLKYL----NLGMCNIKDMPNLTPLVG-------LEELEMSGNHFPEIRPG 236
Query: 442 AFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYL 501
           +F  + +L  L +  N+ +S +    FD L  L  L+LA   L S+P   F  L  L  L
Sbjct: 237 SFHGLSSLKKLWV-MNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295
Query: 502 CLAHN 506
            L HN
Sbjct: 296 HLHHN 300

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 92/244 (37%), Gaps = 31/244 (12%)
Query: 451 HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
           +LNL  N ++  +    F  L  LEVL L    ++ I    F+ L +L  L L  N LT 
Sbjct: 79  YLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137
Query: 511 IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
           IP   F+ L  L  L L NN I ++   +   +PS+ RLDL   K               
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK--------------- 182
Query: 571 NTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSN 630
                           Y+   +F     LK L L        P   +  L  L+E+++S 
Sbjct: 183 -------------KLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSG 227
Query: 631 NQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
           N    I    +  L  L+K       +  I    F   + L  +NL+ N L  LP  LF 
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287
Query: 691 TFLY 694
              Y
Sbjct: 288 PLRY 291

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
Query: 193 ELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHN 252
           ELRL +N F      + +T  F  L  LR ++ S+N+I  IEEG  +G   + E+ +  N
Sbjct: 36  ELRLNNNEF----TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNG 312
           R  ++      G  +L+ L +  NRI  +  DSF+    +  + L  N++TT+  GAF+ 
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151
Query: 313 LAKIHILNLGYNRLN 327
           L  +  LNL  N  N
Sbjct: 152 LHSLSTLNLLANPFN 166

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 156/340 (45%), Gaps = 40/340 (11%)
Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
           N +I+   ++ ++ +   +L     +  L ++  +   I + +      ++ L M +N I
Sbjct: 46  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105
Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
             L    F +   L  ++L  N L+++  G F+   K+  L++  N L ++  DTFQ   
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT- 164
Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLEST-G 397
                 +  L L  NRL          TH+       D   + SL  + N   NL ST  
Sbjct: 165 ----TSLQNLQLSSNRL----------THV-------DLSLIPSL-FHANVSYNLLSTLA 202
Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF-TNVPTLLHLNLSR 456
           +   ++ L+   N I  +    +N + LT L L HNNL +   TA+  N P L+ ++LS 
Sbjct: 203 IPIAVEELDASHNSINVV-RGPVNVE-LTILKLQHNNLTD---TAWLLNYPGLVEVDLSY 257
Query: 457 NAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIP--EM 514
           N  L  +    F  +++LE L ++   L ++  Y    +  LK L L+HNHL  +   + 
Sbjct: 258 NE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQP 315
Query: 515 MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
            F  L NL YLD  +N+IV L++ + +   ++K L LS N
Sbjct: 316 QFDRLENL-YLD--HNSIVTLKLSTHH---TLKNLTLSHN 349

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 55/113 (48%)
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
           +N+ +  LP    D  +++E+L+L    ++ I  Y F     ++ L +  N +  +P  +
Sbjct: 53  KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112
Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKS 568
           F+N+  LT L L  N++ +L  G  +  P +  L +S N L   + D F   +
Sbjct: 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 81/159 (50%), Gaps = 13/159 (8%)
Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLK----ELEPTAFTNVPTLLHLNLSRNAHL 460
           L+    Q+  +  S  +Y  L  LDLSHNNL     E  PT  TN+ +LL   LS N HL
Sbjct: 23  LSCSKQQLPNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLL---LSHN-HL 76
Query: 461 SSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLL 520
           + +    F P+  L  LDL++  L ++ ++ F +L  L+ L L +NH+  +    F+++ 
Sbjct: 77  NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136
Query: 521 NLTYLDLSNNNIVNLRVGSLY---GLPSMKRLDLSFNKL 556
            L  L LS N I    V  +     LP +  LDLS NKL
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
           T+L+L  N L+ L    F  +  L  L+LS+N  + SLP G FD L KL +L L    L+
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQ 89
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
           S+P   FD+L  LK L L  N L  +P+ +F  L +L  + L  N
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 460 LSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNL 519
           L+S+P G      +LE   L +  L+S+P   FD+L  L  L L+ N +  +P+ +F  L
Sbjct: 19  LTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75
Query: 520 LNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFN 565
             LT L L  N + +L  G    L  +K L L  N+L +     F+
Sbjct: 76  TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD 121

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 157/342 (45%), Gaps = 40/342 (11%)
Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
           L N +I+   ++ ++ +   +L     +  L ++  +   I + +      ++ L M +N
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109
Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 336
            I  L    F +   L  ++L  N L+++  G F+   K+  L++  N L ++  DTFQ 
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169
Query: 337 GAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLEST 396
                   +  L L  NRL          TH+       D   + SL  + N   NL ST
Sbjct: 170 T-----TSLQNLQLSSNRL----------THV-------DLSLIPSL-FHANVSYNLLST 206
Query: 397 -GLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF-TNVPTLLHLNL 454
             +   ++ L+   N I  +    +N + LT L L HNNL +   TA+  N P L+ ++L
Sbjct: 207 LAIPIAVEELDASHNSINVV-RGPVNVE-LTILKLQHNNLTD---TAWLLNYPGLVEVDL 261
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIP-- 512
           S N  L  +    F  +++LE L ++   L ++  Y    +  LK L L+HNHL  +   
Sbjct: 262 SYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERN 319
Query: 513 EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
           +  F  L NL YLD  +N+IV L++ + +   ++K L LS N
Sbjct: 320 QPQFDRLENL-YLD--HNSIVTLKLSTHH---TLKNLTLSHN 355

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 55/113 (48%)
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
           +N+ +  LP    D  +++E+L+L    ++ I  Y F     ++ L +  N +  +P  +
Sbjct: 59  KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118
Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKS 568
           F+N+  LT L L  N++ +L  G  +  P +  L +S N L   + D F   +
Sbjct: 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 119/267 (44%), Gaps = 46/267 (17%)
Query: 222 ILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTL 281
           +LDL +N I  + +   KG  +L  L + +N+ + I   + +  R L+ L ++ N +  +
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Query: 282 KADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
             +   S   L  + +  NR+  +  G F+GL  ++ + +G    N L +  F+ GAF+G
Sbjct: 118 PPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG---NPLENSGFEPGAFDG 171
Query: 342 LAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDT 401
           L K++ L +   +L  +  D                                    L +T
Sbjct: 172 L-KLNYLRISEAKLTGIPKD------------------------------------LPET 194
Query: 402 LDNLNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHL 460
           L+ L++  N+I  +     L Y  L +L L HN ++ +E  + + +PTL  L+L  N  L
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-L 253
Query: 461 SSLPVGGFDPLKKLEVLDLAATGLKSI 487
           S +P G  D LK L+V+ L    +  +
Sbjct: 254 SRVPAGLPD-LKLLQVVYLHTNNITKV 279

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 18/214 (8%)
Query: 436 KELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDEL 495
           KE+ P       TLL L   +N  +S L    F  L+ L  L L    +  I +  F  L
Sbjct: 50  KEISPDT-----TLLDL---QNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101
Query: 496 LNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
             L+ L ++ NHL EIP  +  +L+ L   D   N I  +  G   GL +M  +++  N 
Sbjct: 102 RKLQKLYISKNHLVEIPPNLPSSLVELRIHD---NRIRKVPKGVFSGLRNMNCIEMGGNP 158
Query: 556 LTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615
           L        N+  +P                 L      +   L  L L  NK      E
Sbjct: 159 LE-------NSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELE 211
Query: 616 LILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
            +L  S L  + L +NQ++ I++    +LP LR+
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 106/272 (38%), Gaps = 68/272 (25%)
Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
           L+ N++T I+ G F  L  +H L L  N+++K++      GAF  L K+  L L  N+L 
Sbjct: 59  LQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-----GAFAPLVKLERLYLSKNQLK 113
Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
           +L                                       +  TL  L V +N+IT + 
Sbjct: 114 ELPEK------------------------------------MPKTLQELRVHENEITKVR 137
Query: 417 SSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLE 475
            S  N    +  ++L  N LK                        S +  G F  +KKL 
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKS-----------------------SGIENGAFQGMKKLS 174
Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
            + +A T + +IPQ     L  L    L  N +T++     K L NL  L LS N+I  +
Sbjct: 175 YIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTK 567
             GSL   P ++ L L+ NKL    G   + K
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVKVPGGLADHK 263

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 90/233 (38%), Gaps = 33/233 (14%)
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
           +N  ++ +  G F  LK L  L L    +  I    F  L+ L+ L L+ N L E+PE M
Sbjct: 60  QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSX 575
            K L     L +  N I  +R     GL  M  ++L  N L +                 
Sbjct: 120 PKTL---QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------- 159
Query: 576 XXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKT 635
                     + +   +F    KL  +++A       P+ L   L+   E+ L  N++  
Sbjct: 160 ----------SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITK 206
Query: 636 IDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERL 688
           +D      L  L K       I A+      N+  L+ ++L+ N+L K+P  L
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 106/272 (38%), Gaps = 68/272 (25%)
Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
           L+ N++T I+ G F  L  +H L L  N+++K++      GAF  L K+  L L  N+L 
Sbjct: 59  LQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-----GAFAPLVKLERLYLSKNQLK 113
Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
           +L                                       +  TL  L V +N+IT + 
Sbjct: 114 ELPEK------------------------------------MPKTLQELRVHENEITKVR 137
Query: 417 SSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLE 475
            S  N    +  ++L  N LK                        S +  G F  +KKL 
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKS-----------------------SGIENGAFQGMKKLS 174
Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
            + +A T + +IPQ     L  L    L  N +T++     K L NL  L LS N+I  +
Sbjct: 175 YIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTK 567
             GSL   P ++ L L+ NKL    G   + K
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVKVPGGLADHK 263

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 90/233 (38%), Gaps = 33/233 (14%)
Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
           +N  ++ +  G F  LK L  L L    +  I    F  L+ L+ L L+ N L E+PE M
Sbjct: 60  QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSX 575
            K L     L +  N I  +R     GL  M  ++L  N L +                 
Sbjct: 120 PKTL---QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------- 159
Query: 576 XXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKT 635
                     + +   +F    KL  +++A       P+ L   L+   E+ L  N++  
Sbjct: 160 ----------SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITK 206
Query: 636 IDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFNRLEKLPERL 688
           +D      L  L K       I A+      N+  L+ ++L+ N+L K+P  L
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 190/449 (42%), Gaps = 71/449 (15%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLF-------------GDSLNPIFSTS 212
           ++ LDF  NA+  +S K      DT   L  A NL              G  ++ IF + 
Sbjct: 154 LKVLDFQNNAIHYISRK------DT-NSLEQATNLSLNFNGNDIKGIEPGAFISKIFQSL 206
Query: 213 EFHGLVNLRIL--DLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNG--PRAL 268
           +F G +NL I+   L ++ ++++  G  +  D+             + S +  G    ++
Sbjct: 207 KFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDD-----------QYLTSATFEGLCDMSV 255
Query: 269 RILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGG--AFNGLAKIHILNLGYNRL 326
             +++  +R   L + +F     ++ + L    L  +  G    N L K+ +    +++L
Sbjct: 256 ESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQL 315
Query: 327 NKLNSDTFQGGAFNGLAKIHI------LNLGYNRLNKL-NSDTFQGTHITIFSF------ 373
            ++N+      +F  L  ++I      L+LG   L KL N      +H  I +       
Sbjct: 316 CQINA-----ASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQ 370
Query: 374 FQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA-----LNYKLLTKL 428
            ++ + L+ L+L+ N  + LE    ++    L + D   T L   A      N  LL  L
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKEC-PQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 429 DLSHNNLKELEPTAFTNVPTLLHLNLSRNAHL--SSLPVGGFDPLKKLEVLDLAATGLKS 486
           +LSH  L          +  L HLNL  N+    S         +  LE+L L++  L S
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLS 489
Query: 487 IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
           I Q  F  L N+ +L L+HN LT        +L  L YL++++NNI   R+   + LP++
Sbjct: 490 IDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNI---RIIPPHLLPAL 545
Query: 547 KR---LDLSFNKL-TTFKGDYFNTKSKPN 571
            +   ++LS N L  T    +F T  K N
Sbjct: 546 SQQSIINLSHNPLDCTCSNIHFITWYKEN 574

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 146/353 (41%), Gaps = 60/353 (16%)
Query: 292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG 351
           +E I L+ +R + +    F    ++  L+L    LN L S        N L K+ +    
Sbjct: 255 VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGI---EGMNSLKKLVLNANS 311
Query: 352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL-INLESTGLEDTLDNLNVRDN 410
           +++L ++N+ +F                L+ L + GN   ++L +  LE  L+NL   D 
Sbjct: 312 FDQLCQINAASFPS--------------LRDLYIKGNMRKLDLGTRCLEK-LENLQKLDL 356
Query: 411 QITTLSSSAL------NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLP 464
             + + +S        N + L  L+LS+N    LE  AF   P L  L+++        P
Sbjct: 357 SHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAP 416
Query: 465 VGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLL---- 520
              F  L  L VL+L+   L +  Q+    L +L++L L  N   +   +   NLL    
Sbjct: 417 HSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD-GSISKTNLLQMVG 475
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXX 580
           +L  L LS+ N++++   + +GL ++  LDLS N LT   GD  +  S            
Sbjct: 476 SLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLT---GDSMDALS------------ 520
Query: 581 XXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL 633
                          H K   L +A N     P  L+  LS    I+LS+N L
Sbjct: 521 ---------------HLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS 461
           L  LN+   ++T L        +L  LDLSHN L+ L P     +P L  L++S N  L+
Sbjct: 57  LTQLNLDRCELTKLQVDG-TLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFN-RLT 113
Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521
           SLP+G    L +L+ L L    LK++P         L+ L LA+N LTE+P  +   L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 522 LTYLDLSNNNIVNLRVG 538
           L  L L  N++  +  G
Sbjct: 174 LDTLLLQENSLYTIPKG 190

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS 461
           L  LN+   ++T L        +L  LDLSHN L+ L P     +P L  L++S N  L+
Sbjct: 57  LTQLNLDRCELTKLQVDG-TLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFN-RLT 113
Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521
           SLP+G    L +L+ L L    LK++P         L+ L LA+N LTE+P  +   L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 522 LTYLDLSNNNIVNLRVG 538
           L  L L  N++  +  G
Sbjct: 174 LDTLLLQENSLYTIPKG 190

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS 461
           L  LN+   ++T L        +L  LDLSHN L+ L P     +P L  L++S N  L+
Sbjct: 57  LTQLNLDRCELTKLQVDG-TLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFN-RLT 113
Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521
           SLP+G    L +L+ L L    LK++P         L+ L LA+N LTE+P  +   L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 522 LTYLDLSNNNIVNLRVG 538
           L  L L  N++  +  G
Sbjct: 174 LDTLLLQENSLYTIPKG 190

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS 461
           L  LN+   ++T L        +L  LDLSHN L+ L P     +P L  L++S N  L+
Sbjct: 57  LTQLNLDRCELTKLQVDG-TLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFN-RLT 113
Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521
           SLP+G    L +L+ L L    LK++P         L+ L LA+N LTE+P  +   L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 522 LTYLDLSNNNIVNLRVG 538
           L  L L  N++  +  G
Sbjct: 174 LDTLLLQENSLYTIPKG 190

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 9/134 (6%)
Query: 222 ILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTL 281
           ++  S+  +K + +GI +   ++ EL +D N+FT +P   L+  + L ++ ++ NRI TL
Sbjct: 14  VVRCSNKGLKVLPKGIPR---DVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTL 69
Query: 282 KADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
              SF +   L  +IL  NRL  I    F+GL  + +L+L  N ++         GAFN 
Sbjct: 70  SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-----VVPEGAFND 124
Query: 342 LAKIHILNLGYNRL 355
           L+ +  L +G N L
Sbjct: 125 LSALSHLAIGANPL 138

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 397 GLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSR 456
           G+   +  L +  NQ T +     NYK LT +DLS+N +  L   +F+N+  LL L LS 
Sbjct: 28  GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 457 NAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHL 508
           N  L  +P   FD LK L +L L    +  +P+  F++L  L +L +  N L
Sbjct: 88  N-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 144/345 (41%), Gaps = 43/345 (12%)
Query: 204 SLNPIFSTSE--FHGLVNLRILDLSDNQIK-AIEEGILKGCDNLLELRMDHNRFTSIPSV 260
           SLN I   +E  F  L +L+ L +        I     +G  +L+ L++D+N+F  + + 
Sbjct: 38  SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97
Query: 261 SLNGPRALRILSMAYNRI--GTLKADSFLSQRWLERIILRGNRLTTIEGGAFN-GLAKIH 317
           + NG   L +L++    +    L  + F     LE ++LR N +  I+  +F   + + H
Sbjct: 98  AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157
Query: 318 ILNLGYNRLNKLNSD---TFQGGAFN-------GLAKIHILNLGYNRLNKLNSDTFQGTH 367
           +L+L +N++  +  +    FQG  F         L  ++   LG+ +      + F+ T 
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC----GNPFKNTS 213
Query: 368 ITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTK 427
           IT            +LDL+GN        G ++++          T + S  L+      
Sbjct: 214 IT------------TLDLSGN--------GFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253
Query: 428 LDLSHNNLKELEPTAFTNVPT--LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
               H N K+ +   F  +    +   +LS+ + + +L    F     LE L LA   + 
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSK-SKIFALLKSVFSHFTDLEQLTLAQNEIN 312
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
            I    F  L +LK L L  N L  +P+ +F  L +L  + L  N
Sbjct: 313 KIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 140/359 (38%), Gaps = 53/359 (14%)
Query: 343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTL 402
           A ++ ++L  N + +LN         T FS  QD Q LK                +E   
Sbjct: 30  AHVNYVDLSLNSIAELNE--------TSFSRLQDLQFLK----------------VEQQT 65
Query: 403 DNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSR-NAHLS 461
             L +R+N    LSS       L  L L +N   +LE  AF  +  L  L L++ N   +
Sbjct: 66  PGLVIRNNTFRGLSS-------LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118
Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSI-PQYQFDELLNLKYLCLAHNHLTEIPEMMFKN-- 518
            L    F PL  LE+L L    +K I P   F  +     L L  N +  I E    N  
Sbjct: 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178
Query: 519 -----LLNLTYLDLSNNNIVNL---RVGSLYGLPSMKRLDLSFNKLT-TFKGDYFNTKSK 569
                LL L+ + L + N   L   + G+ +   S+  LDLS N    +    +F+  + 
Sbjct: 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238
Query: 570 PNTSSXXXXXXXXXXXTYLF-----PSSFTIH----SKLKTLKLAFNKFNYFPKELILGL 620
               S           ++       P +FT      S +KT  L+ +K     K +    
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298
Query: 621 SYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFNSSQLQIINLSFN 679
           + L+++ L+ N++  IDD  +  L  L++       + ++ +  F   + LQ I L  N
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS 461
           L  LN+   ++T L        +L  LDLSHN L+ L P     +P L  L++S N  L+
Sbjct: 57  LTQLNLDRCELTKLQVDG-TLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFN-RLT 113
Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521
           SLP+G    L +L+ L L    LK++P         L+ L LA+N LTE+P  +   L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLEN 173
Query: 522 LTYLDLSNNNIVNLRVG 538
           L  L L  N++  +  G
Sbjct: 174 LDTLLLQENSLYTIPKG 190

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
           L L  N + +LEP  F ++  L +LNL+ N  L++LPVG FD L KL  L L    LKSI
Sbjct: 45  LHLYINQITKLEPGVFDSLTQLTYLNLAVN-QLTALPVGVFDKLTKLTHLALHINQLKSI 103
Query: 488 PQYQFDELLNLKYLCLAHN 506
           P   FD L +L ++ L +N
Sbjct: 104 PMGVFDNLKSLTHIYLFNN 122

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 405 LNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
           L++ +N + T S ++ + Y  LT+L+L    L +L+      +P L  L+LS N  L SL
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHN-QLQSL 92
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
           P+ G   L  L VLD++   L S+P      L  L+ L L  N L  +P  +      L 
Sbjct: 93  PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
            L L+NNN+  L  G L GL ++  L L  N L T    +F +   P
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 405 LNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
           L++ +N + T S ++ + Y  LT+L+L    L +L+      +P L  L+LS N  L SL
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHN-QLQSL 92
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
           P+ G   L  L VLD++   L S+P      L  L+ L L  N L  +P  +      L 
Sbjct: 93  PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
            L L+NNN+  L  G L GL ++  L L  N L T    +F +   P
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 405 LNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
           L++ +N + T S ++ + Y  LT+L+L    L +L+      +P L  L+LS N  L SL
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHN-QLQSL 92
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
           P+ G   L  L VLD++   L S+P      L  L+ L L  N L  +P  +      L 
Sbjct: 93  PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
            L L+NNN+  L  G L GL ++  L L  N L T    +F +   P
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 405 LNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
           L++ +N + T S ++ + Y  LT+L+L    L +L+      +P L  L+LS N  L SL
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHN-QLQSL 92
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
           P+ G   L  L VLD++   L S+P      L  L+ L L  N L  +P  +      L 
Sbjct: 93  PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
            L L+NNN+  L  G L GL ++  L L  N L T    +F +   P
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 405 LNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
           L++ +N + T S ++ + Y  LT+L+L    L +L+      +P L  L+LS N  L SL
Sbjct: 37  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHN-QLQSL 93
Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
           P+ G   L  L VLD++   L S+P      L  L+ L L  N L  +P  +      L 
Sbjct: 94  PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 152
Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
            L L+NNN+  L  G L GL ++  L L  N L T    +F +   P
Sbjct: 153 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 199

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 114/503 (22%), Positives = 195/503 (38%), Gaps = 113/503 (22%)
Query: 163 DIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNL 220
           DIP   + +D S N L+ L    FS   + LQ L L+                +HGL +L
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFSNFSE-LQWLDLSRCEI-----ETIEDKAWHGLHHL 82
Query: 221 RILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGT 280
             L L+ N I++   G   G  +L  L     +  S+ S  +     L+ L++A+N I +
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142
Query: 281 LKADSF-----------LSQRWLERIILRG------------------NRLTTIEGGAFN 311
            K  ++           LS  +++ I +                    N +  I+  AF 
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202
Query: 312 GLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHI--LNLGYNR--------------- 354
           G+ K+H L L  N     NS          LA +H+  L LG  +               
Sbjct: 203 GI-KLHELTLRGN----FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257
Query: 355 LNKLNSDTFQGTHITIFS----FFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
           L  +  D F+ T+   FS     F     + ++ L G  +  LE         +L++   
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 317
Query: 411 QIT---------------TLSSSALNYKL-----LTKLDLSHNNLKELEPTAFTNVPT-- 448
           Q+                T++  ++++K      L+ LDLS N L      +++++ T  
Sbjct: 318 QLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377
Query: 449 LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ-FDELLNLKYLCLAHNH 507
           L HL+LS N  +  +    F  L++L+ LD   + LK + ++  F  L  L YL +++ +
Sbjct: 378 LRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435
Query: 508 -----------LTEIPEM--------------MFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
                      LT +  +              +F N  NLT+LDLS   +  +  G    
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495
Query: 543 LPSMKRLDLSFNKLTTFKGDYFN 565
           L  ++ L++S N L      ++N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYN 518

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 114/503 (22%), Positives = 195/503 (38%), Gaps = 113/503 (22%)
Query: 163 DIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNL 220
           DIP   + +D S N L+ L    FS   + LQ L L+                +HGL +L
Sbjct: 24  DIPSSTKNIDLSFNPLKILKSYSFSNFSE-LQWLDLSRCEI-----ETIEDKAWHGLHHL 77
Query: 221 RILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGT 280
             L L+ N I++   G   G  +L  L     +  S+ S  +     L+ L++A+N I +
Sbjct: 78  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 137
Query: 281 LKADSF-----------LSQRWLERIILRG------------------NRLTTIEGGAFN 311
            K  ++           LS  +++ I +                    N +  I+  AF 
Sbjct: 138 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 197
Query: 312 GLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHI--LNLGYNR--------------- 354
           G+ K+H L L  N     NS          LA +H+  L LG  +               
Sbjct: 198 GI-KLHELTLRGN----FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 252
Query: 355 LNKLNSDTFQGTHITIFS----FFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
           L  +  D F+ T+   FS     F     + ++ L G  +  LE         +L++   
Sbjct: 253 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 312
Query: 411 QIT---------------TLSSSALNYKL-----LTKLDLSHNNLKELEPTAFTNVPT-- 448
           Q+                T++  ++++K      L+ LDLS N L      +++++ T  
Sbjct: 313 QLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 372
Query: 449 LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ-FDELLNLKYLCLAHNH 507
           L HL+LS N  +  +    F  L++L+ LD   + LK + ++  F  L  L YL +++ +
Sbjct: 373 LRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 430
Query: 508 -----------LTEIPEM--------------MFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
                      LT +  +              +F N  NLT+LDLS   +  +  G    
Sbjct: 431 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 490
Query: 543 LPSMKRLDLSFNKLTTFKGDYFN 565
           L  ++ L++S N L      ++N
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYN 513

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 404 NLNVRDNQITTLSS-SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSS 462
           NL++  N +  L S S  ++  L  LDLS   ++ +E  A+ ++  L  L L+ N  + S
Sbjct: 33  NLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQS 91
Query: 463 LPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT--EIPEMMFKNLL 520
           L +G F  L  L+ L    T L S+  +    L  LK L +AHN +   ++PE  F NL 
Sbjct: 92  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLT 150
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSM 546
           NL +LDLS+N I ++    L  L  M
Sbjct: 151 NLEHLDLSSNKIQSIYCTDLRVLHQM 176

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 404 NLNVRDNQITTLSS-SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSS 462
           NL++  N +  L S S  ++  L  LDLS   ++ +E  A+ ++  L  L L+ N  + S
Sbjct: 34  NLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQS 92
Query: 463 LPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT--EIPEMMFKNLL 520
           L +G F  L  L+ L    T L S+  +    L  LK L +AHN +   ++PE  F NL 
Sbjct: 93  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLT 151
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSM 546
           NL +LDLS+N I ++    L  L  M
Sbjct: 152 NLEHLDLSSNKIQSIYCTDLRVLHQM 177

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 242 DNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNR 301
           + + E+R++ N    IP  + +  + LR + ++ N+I  L  D+F   R L  ++L GN+
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 302 LTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSD 361
           +T +    F GL  + +L L  N++N L  D FQ      L  +++L+L  N+L  +   
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQ-----DLHNLNLLSLYDNKLQTIAKG 146
Query: 362 TF 363
           TF
Sbjct: 147 TF 148

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 433 NNLKELEPTAFTNVPT-----LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
           NN+ +      T +PT     +  + L +N  +  +P G F P KKL  +DL+   +  +
Sbjct: 13  NNIVDCRGKGLTEIPTNLPETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISEL 71
Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK 547
               F  L +L  L L  N +TE+P+ +F+ L +L  L L+ N I  LRV +   L ++ 
Sbjct: 72  APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLN 131
Query: 548 RLDLSFNKLTTFKGDYFN 565
            L L  NKL T     F+
Sbjct: 132 LLSLYDNKLQTIAKGTFS 149

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 404 NLNVRDNQITTLSS-SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSS 462
           NL++  N +  L S S  ++  L  LDLS   ++ +E  A+ ++  L  L L+ N  + S
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQS 90
Query: 463 LPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT--EIPEMMFKNLL 520
           L +G F  L  L+ L    T L S+  +    L  LK L +AHN +   ++PE  F NL 
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLT 149
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSM 546
           NL +LDLS+N I ++    L  L  M
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQM 175

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 404 NLNVRDNQITTLSS-SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSS 462
           NL++  N +  L S S  ++  L  LDLS   ++ +E  A+ ++  L  L L+ N  + S
Sbjct: 33  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQS 91
Query: 463 LPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT--EIPEMMFKNLL 520
           L +G F  L  L+ L    T L S+  +    L  LK L +AHN +   ++PE  F NL 
Sbjct: 92  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLT 150
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSM 546
           NL +LDLS+N I ++    L  L  M
Sbjct: 151 NLEHLDLSSNKIQSIYCTDLRVLHQM 176

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 242 DNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNR 301
           + + E+R++ N    IP  + +  + LR + ++ N+I  L  D+F   R L  ++L GN+
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 302 LTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSD 361
           +T +    F GL  + +L L  N++N L  D FQ      L  +++L+L  N+L  +   
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ-----DLHNLNLLSLYDNKLQTIAKG 146
Query: 362 TF------QGTHITIFSFFQD 376
           TF      Q  H+    F  D
Sbjct: 147 TFSPLRAIQTMHLAQNPFICD 167

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 433 NNLKELEPTAFTNVPT-----LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
           NN+ +      T +PT     +  + L +N  +  +P G F P KKL  +DL+   +  +
Sbjct: 13  NNIVDCRGKGLTEIPTNLPETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISEL 71
Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK 547
               F  L +L  L L  N +TE+P+ +F+ L +L  L L+ N I  LRV +   L ++ 
Sbjct: 72  APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131
Query: 548 RLDLSFNKLTTFKGDYFN 565
            L L  NKL T     F+
Sbjct: 132 LLSLYDNKLQTIAKGTFS 149

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 404 NLNVRDNQITTLSS-SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSS 462
           NL++  N +  L S S  ++  L  LDLS   ++ +E  A+ ++  L  L L+ N  + S
Sbjct: 34  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQS 92
Query: 463 LPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT--EIPEMMFKNLL 520
           L +G F  L  L+ L    T L S+  +    L  LK L +AHN +   ++PE  F NL 
Sbjct: 93  LALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLT 151
Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSM 546
           NL +LDLS+N I ++    L  L  M
Sbjct: 152 NLEHLDLSSNKIQSIYCTDLRVLHQM 177

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 175/436 (40%), Gaps = 121/436 (27%)
Query: 187 HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLE 246
           H  TL+EL +A NL      P +    F  L NL  LDLS N+I++I       C    +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEY----FSNLTNLEHLDLSSNKIQSIY------CT---D 168
Query: 247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGN------ 300
           LR+ H             P     L ++ N +  ++  +F   R L ++ LR N      
Sbjct: 169 LRVLHQM-----------PLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNV 216
Query: 301 RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHI--LNLGY------ 352
             T I+G A  GL ++H L LG  R N+ N + F   A  GL  + I    L Y      
Sbjct: 217 MKTCIQGLA--GL-EVHRLVLGEFR-NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272
Query: 353 ---NRLNKL-NSDTFQGTHITI-----FSFFQDFQ---------------KLKSL----- 383
              +  N L N  +F    +TI     FS+   +Q               KLKSL     
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332
Query: 384 ------------DLNGNFLINLESTGLE------------DTLDNLNVRDNQITTLSSSA 419
                       DL     ++L   GL              +L  L++  N + T+SS+ 
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392
Query: 420 LNYKLLTKLDLSHNNLKEL-EPTAFTNVPTLLHLNLSRN-------------AHLSSLPV 465
           L  + L  LD  H+NLK++ E + F ++  L++L++S               + L  L +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 466 GG-----------FDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
            G           F  L+ L  LDL+   L+ +    F+ L +L+ L +A N L  +P+ 
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512
Query: 515 MFKNLLNLTYLDLSNN 530
           +F  L +L  + L  N
Sbjct: 513 IFDRLTSLQKIWLHTN 528

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 200/514 (38%), Gaps = 107/514 (20%)
Query: 204 SLNPI--FSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS 261
           S NP+    +  F     L++LDLS  +I+ IE+G  +   +L  L +  N   S+   +
Sbjct: 36  SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95
Query: 262 LNG------------------------PRALRILSMAYNRIGTLKADSFLSQRW-LERII 296
            +G                         + L+ L++A+N I + K   + S    LE + 
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 297 LRGNRLTT----------------------------IEGGAFNGLAKIHILNLGYNRLNK 328
           L  N++ +                            I+ GAF  + ++H L L     N 
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR----NN 210
Query: 329 LNSDTFQGGAFNGLA--KIHILNLGYNR----LNKLNSDTFQG-THITIFSF---FQDFQ 378
            +S         GLA  ++H L LG  R    L K +    +G  ++TI  F   + D+ 
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 379 KLKSLDLNGNFLINLESTGLEDT----------------LDNLNVRDNQITTLSSSALNY 422
               +DL  N L N+ S  L                   L+ +N +  Q  T     L  
Sbjct: 271 LDDIIDL-FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT-----LKL 324
Query: 423 KLLTKLDLSHNNLKELEPTAFTNV--PTLLHLNLSRNAHLSSLPVGGFD-PLKKLEVLDL 479
           K L +L  + N        AF+ V  P+L  L+LSRN           D     L+ LDL
Sbjct: 325 KSLKRLTFTSNK----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM-MFKNLLNLTYLDLSNNNIVNLRVG 538
           +  G+ ++    F  L  L++L   H++L ++ E  +F +L NL YLD+S+ +      G
Sbjct: 381 SFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 539 SLYGLPSMKRLDLSFNKLT-TFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHS 597
              GL S++ L ++ N     F  D F         +             L P++F   S
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFT-----ELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 598 KLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
            L+ L +A N+    P  +   L+ LQ+I L  N
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 105/503 (20%), Positives = 190/503 (37%), Gaps = 121/503 (24%)
Query: 268 LRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN 327
           L++L ++   I T++  ++ S   L  +IL GN + ++  GAF+GL+ +  L      L 
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 328 KLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNG 387
            L  + F  G    L +   LN+ +N +              +  +F +   L+ LDL+ 
Sbjct: 114 SL--ENFPIGHLKTLKE---LNVAHNLIQSFK----------LPEYFSNLTNLEHLDLSS 158
Query: 388 NFL--------------------------------------INLESTGLEDTLDNLNVRD 409
           N +                                      I L    L +  D+LNV  
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Query: 410 NQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVP--TLLHLNLSRNAHLSSLPVGG 467
             I  L+   ++  +L +   +  NL++ + +A   +   T+    L+   +     +  
Sbjct: 219 TCIQGLAGLEVHRLVLGEFR-NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277
Query: 468 FDPLKKLEVLDLAATGLKSIPQYQFD------ELLNLKYLCLAHNHLTEIPEMMFK---- 517
           F+ L  +    L +  ++ +  + ++      EL+N K+       L  +  + F     
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337
Query: 518 -------NLLNLTYLDLSNNNIV--NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTK- 567
                  +L +L +LDLS N +        S +G  S+K LDLSFN + T   ++   + 
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397
Query: 568 --------SKPNTSSXXXXXXXXXXXTYL----------FPSSFTIHSKLKTLKLAFNKF 609
                   S     S            YL          F   F   S L+ LK+A N F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 610 --NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKXXXXXXXIDAISETCFFN 667
             N+ P ++   L  L  +DLS  QL                        + +S T F +
Sbjct: 458 QENFLP-DIFTELRNLTFLDLSQCQL------------------------EQLSPTAFNS 492
Query: 668 SSQLQIINLSFNRLEKLPERLFN 690
            S LQ++N++ N+L+ +P+ +F+
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFD 515

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 20/225 (8%)
Query: 327 NKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDF--QKLKSLD 384
           NKL S     G F+ L ++  L+L  N L      +F+G          DF    LK LD
Sbjct: 38  NKLQS--LPHGVFDKLTQLTKLSLSSNGL------SFKGCCSQ-----SDFGTTSLKYLD 84
Query: 385 LNGNFLINLEST--GLEDTLDNLNVRDNQITTLS--SSALNYKLLTKLDLSHNNLKELEP 440
           L+ N +I + S   GLE  L++L+ + + +  +S  S  L+ + L  LD+SH + +    
Sbjct: 85  LSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143
Query: 441 TAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKY 500
             F  + +L  L ++ N+   +     F  L+ L  LDL+   L+ +    F+ L +L+ 
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Query: 501 LCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
           L ++HN+   +    +K L +L  LD S N+I+  +   L   PS
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 153/366 (41%), Gaps = 59/366 (16%)
Query: 187 HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLE 246
           HR  L E R   NL        F  S   GL NL            IEE  L   D  L+
Sbjct: 254 HRLVLGEFRNEGNL------EKFDKSALEGLCNL-----------TIEEFRLAYLDYYLD 296
Query: 247 LRMD-HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
             +D  N  T++ S SL      R+   +YN             + LE +  +  +  T 
Sbjct: 297 GIIDLFNCLTNVSSFSLVSVTIERVKDFSYN----------FGWQHLELVNCKFGQFPT- 345
Query: 306 EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 365
                          L    L +L   + +GG  N  +++ + +L +  L++ N  +F+G
Sbjct: 346 ---------------LKLKSLKRLTFTSNKGG--NAFSEVDLPSLEFLDLSR-NGLSFKG 387
Query: 366 THITIFSFFQDFQ--KLKSLDLNGNFLINLEST--GLEDTLDNLNVRDNQITTLS--SSA 419
                     DF    LK LDL+ N +I + S   GLE  L++L+ + + +  +S  S  
Sbjct: 388 CCSQ-----SDFGTISLKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVF 441
Query: 420 LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
           L+ + L  LD+SH + +      F  + +L  L ++ N+   +     F  L+ L  LDL
Sbjct: 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
           +   L+ +    F+ L +L+ L ++HN+   +    +K L +L  LD S N+I+  +   
Sbjct: 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561
Query: 540 LYGLPS 545
           L   PS
Sbjct: 562 LQHFPS 567

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 129/536 (24%), Positives = 210/536 (39%), Gaps = 123/536 (22%)
Query: 204 SLNPI--FSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS 261
           S NP+    +  F     L++LDLS  +I+ IE+G  +   +L  L +  N   S+   +
Sbjct: 60  SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119
Query: 262 LNG------------------------PRALRILSMAYNRIGTLKADSFLSQRW-LERII 296
            +G                         + L+ L++A+N I + K   + S    LE + 
Sbjct: 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179
Query: 297 LRGNRLTT----------------------------IEGGAFNGLAKIHILNLGYNRLNK 328
           L  N++ +                            I+ GAF  + ++H L L     N 
Sbjct: 180 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR----NN 234
Query: 329 LNSDTFQGGAFNGLA--KIHILNLGYNR----LNKLNSDTFQG-THITIFSFFQDFQKLK 381
            +S         GLA  ++H L LG  R    L K +    +G  ++TI  F     +L 
Sbjct: 235 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF-----RLA 289
Query: 382 SLD--LNG-----NFLINLESTGLEDT----------------LDNLNVRDNQITTLSSS 418
            LD  L+G     N L N+ S  L                   L+ +N +  Q  T    
Sbjct: 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---- 345
Query: 419 ALNYKLLTKLDLSHNNLKELEPTAFTNV--PTLLHLNLSRN--AHLSSLPVGGFDPLKKL 474
            L  K L +L  + N        AF+ V  P+L  L+LSRN  +         F  +  L
Sbjct: 346 -LKLKSLKRLTFTSNK----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI-SL 399
Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM-MFKNLLNLTYLDLSNNNIV 533
           + LDL+  G+ ++    F  L  L++L   H++L ++ E  +F +L NL YLD+S+ +  
Sbjct: 400 KYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 458
Query: 534 NLRVGSLYGLPSMKRLDLSFNKLT-TFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSS 592
               G   GL S++ L ++ N     F  D F         +             L P++
Sbjct: 459 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-----ELRNLTFLDLSQCQLEQLSPTA 513
Query: 593 FTIHSKLKTLKLAFNKF---NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP 645
           F   S L+ L ++ N F   + FP +    L+ LQ +D S N + T    +  + P
Sbjct: 514 FNSLSSLQVLNMSHNNFFSLDTFPYKC---LNSLQVLDYSLNHIMTSKKQELQHFP 566

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 153/366 (41%), Gaps = 59/366 (16%)
Query: 187 HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLE 246
           HR  L E R   NL        F  S   GL NL            IEE  L   D  L+
Sbjct: 230 HRLVLGEFRNEGNL------EKFDKSALEGLCNL-----------TIEEFRLAYLDYYLD 272
Query: 247 LRMD-HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
             +D  N  T++ S SL      R+   +YN             + LE +  +  +  T 
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYN----------FGWQHLELVNCKFGQFPT- 321
Query: 306 EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 365
                          L    L +L   + +GG  N  +++ + +L +  L++ N  +F+G
Sbjct: 322 ---------------LKLKSLKRLTFTSNKGG--NAFSEVDLPSLEFLDLSR-NGLSFKG 363
Query: 366 THITIFSFFQDF--QKLKSLDLNGNFLINLEST--GLEDTLDNLNVRDNQITTLS--SSA 419
                     DF    LK LDL+ N +I + S   GLE  L++L+ + + +  +S  S  
Sbjct: 364 CCSQ-----SDFGTTSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVF 417
Query: 420 LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
           L+ + L  LD+SH + +      F  + +L  L ++ N+   +     F  L+ L  LDL
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
           +   L+ +    F+ L +L+ L ++HN+   +    +K L +L  LD S N+I+  +   
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Query: 540 LYGLPS 545
           L   PS
Sbjct: 538 LQHFPS 543

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 127/531 (23%), Positives = 207/531 (38%), Gaps = 113/531 (21%)
Query: 204 SLNPI--FSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS 261
           S NP+    +  F     L++LDLS  +I+ IE+G  +   +L  L +  N   S+   +
Sbjct: 36  SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95
Query: 262 LNG------------------------PRALRILSMAYNRIGTLKADSFLSQRW-LERII 296
            +G                         + L+ L++A+N I + K   + S    LE + 
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 297 LRGNRLTT----------------------------IEGGAFNGLAKIHILNLGYNRLNK 328
           L  N++ +                            I+ GAF  + ++H L L     N 
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR----NN 210
Query: 329 LNSDTFQGGAFNGLA--KIHILNLGYNR----LNKLNSDTFQG-THITIFSF---FQDFQ 378
            +S         GLA  ++H L LG  R    L K +    +G  ++TI  F   + D+ 
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 379 KLKSLDLNGNFLINLESTGLEDT----------------LDNLNVRDNQITTLSSSALNY 422
               +DL  N L N+ S  L                   L+ +N +  Q  TL       
Sbjct: 271 LDDIIDL-FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-----L 324
Query: 423 KLLTKLDLSHNNLKELEPTAFTNV--PTLLHLNLSRNAHLSSLPVGGFD-PLKKLEVLDL 479
           K L +L  + N        AF+ V  P+L  L+LSRN           D     L+ LDL
Sbjct: 325 KSLKRLTFTSNK----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM-MFKNLLNLTYLDLSNNNIVNLRVG 538
           +  G+ ++    F  L  L++L   H++L ++ E  +F +L NL YLD+S+ +      G
Sbjct: 381 SFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 539 SLYGLPSMKRLDLSFNKLT-TFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHS 597
              GL S++ L ++ N     F  D F         +             L P++F   S
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFT-----ELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 598 KLKTLKLAFNKF---NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP 645
            L+ L ++ N F   + FP +    L+ LQ +D S N + T    +  + P
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKC---LNSLQVLDYSLNHIMTSKKQELQHFP 542

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 27/267 (10%)
Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
           ++ LDLS+N+I  I    L+ C NL  L +  N   +I   S +   +L  L ++YN + 
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 280 TLKADSFLSQRWLERIILRGNRLTTI-EGGAFNGLAKIHILNLGYNRLNKLNSDTF---Q 335
            L +  F     L  + L GN   T+ E   F+ L K+ IL +G       N DTF   Q
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG-------NMDTFTKIQ 166
Query: 336 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES 395
              F GL  +  L +  + L      + +             Q +  L++  +   ++E 
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226
Query: 396 TGLEDT-LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF------TNVPT 448
             L DT LD  +   ++++T  +++L  K       +  N+K  + + F        +  
Sbjct: 227 LELRDTDLDTFHF--SELSTGETNSLIKK------FTFRNVKITDESLFQVMKLLNQISG 278
Query: 449 LLHLNLSRNAHLSSLPVGGFDPLKKLE 475
           LL L  SRN  L S+P G FD L  L+
Sbjct: 279 LLELEFSRN-QLKSVPDGIFDRLTSLQ 304

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 14/263 (5%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL-LTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
           +GL + + +L++ +N+IT +S+S L   + L  L L+ N +  +E  +F+++ +L HL+L
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ-FDELLNLKYLCLAH-NHLTEIP 512
           S N +LS+L    F PL  L  L+L     K++ +   F  L  L+ L + + +  T+I 
Sbjct: 108 SYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166
Query: 513 EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT 572
              F  L  L  L++  +++ +    SL  + ++  L L   +       + +  S    
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS---- 222
Query: 573 SSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPK------ELILGLSYLQEI 626
           S            T+ F    T  +     K  F       +      +L+  +S L E+
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282
Query: 627 DLSNNQLKTIDDYDYGYLPRLRK 649
           + S NQLK++ D  +  L  L+K
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQK 305

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
           ++  L SIP    + +   K L L++N +T I     +  +NL  L L++N I  +   S
Sbjct: 39  SSGSLNSIPSGLTEAV---KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95
Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKL 599
              L S++ LDLS+N L+     +F    KP +S            T    S F+  +KL
Sbjct: 96  FSSLGSLEHLDLSYNYLSNLSSSWF----KPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151
Query: 600 KTLKLA-FNKFNYFPKELILGLSYLQEIDLSNNQLKTID 637
           + L++   + F    ++   GL++L+E+++  + L++ +
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
           T +D S  +L  +     T +PT   +    +  ++ L  G FD L +L  LDL    L 
Sbjct: 20  TTVDCSGKSLASVP----TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 75
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
            +P   FD+L  L  L L  N L  IP   F NL +LT++ L NN
Sbjct: 76  VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
           T +D S  +L  + PT       +L+L  +R   ++ L  G FD L +L  LDL    L 
Sbjct: 12  TTVDCSGKSLASV-PTGIPTTTQVLYLYDNR---ITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
            +P   FD+L  L  L L  N L  IP   F NL +LT++ L NN
Sbjct: 68  VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112

>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329) From Bacteroides Eggerthii Dsm 20697 At 2.70 A Resolution Length = 636

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 127/313 (40%), Gaps = 34/313 (10%)
Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLD-LNGNFLINLESTGLEDTL 402
           KI I+ +GYN L     +T            Q  +KL  L+ L       L + G E  L
Sbjct: 306 KIQIIYIGYNNLKTFPVETS----------LQKXKKLGXLECLYNQLEGKLPAFGSEIKL 355
Query: 403 DNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKELEPTAF--TNVPTLLHLNLSRNAH 459
            +LN+  NQIT + ++   + + +  L  +HN LK + P  F   +V     ++ S N  
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVXSAIDFSYN-E 413
Query: 460 LSSLPVGGFDPL-----KKLEV--LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIP 512
           + S+    FDPL     K + V  ++L+   +   P+  F     L  + L  N LTEIP
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIP 473
Query: 513 EMM-------FKNLLNLTYLDLSNNNIVNLRVG-SLYGLPSMKRLDLSFNKLTTFKGDYF 564
           +         FKN   LT +DL  N +  L        LP +  +DLS+N  + F     
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL 533
Query: 565 NTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ 624
           N+ +                    +P   T+   L  L++  N      +++   +S L 
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVL- 592
Query: 625 EIDLSNNQLKTID 637
             D+ +N   +ID
Sbjct: 593 --DIKDNPNISID 603

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
           T +D S  +L  +     T +PT   +    +  ++ L  G FD L +L  LDL    L 
Sbjct: 12  TTVDCSGKSLASVP----TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
            +P   FD+L  L  L L  N L  IP   F NL +LT++ L NN
Sbjct: 68  VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 138/333 (41%), Gaps = 40/333 (12%)
Query: 195 RLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF 254
           +L D L  +  N I   +    L NL  L L +NQI  I+   LK   NL  L +  N  
Sbjct: 86  KLVDILMNN--NQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 141
Query: 255 TSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLA 314
           + I ++S  G  +L+ LS + N++  LK  + L+   LER+ +  N+++ I   A     
Sbjct: 142 SDISALS--GLTSLQQLSFSSNQVTDLKPLANLTT--LERLDISSNKVSDISVLA----- 192
Query: 315 KIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFF 374
                     +L  L S        + +  + IL         L+  +  G  +      
Sbjct: 193 ----------KLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTL 235
Query: 375 QDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN 434
                L  LDL  N + NL        L  L +  NQI+ +S  A     LT L+L+ N 
Sbjct: 236 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA-GLTALTNLELNENQ 294
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDE 494
           L+++ P   +N+  L +L L  N      PV     L++L   +   + + S+       
Sbjct: 295 LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLA-----N 347
Query: 495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDL 527
           L N+ +L   HN ++++  +   NL  +T L L
Sbjct: 348 LTNINWLSAGHNQISDLTPL--ANLTRITQLGL 378

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
           G   LN L    F    +T  +  ++  KL  + +N N + ++        L  L + +N
Sbjct: 58  GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 117
Query: 411 QITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470
           QIT +     N   L +L+LS N + ++  +A + + +L  L+ S N      P+     
Sbjct: 118 QITDIDPLK-NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLAN--- 171
Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM---------------- 514
           L  LE LD+++  +  I      +L NL+ L   +N +++I  +                
Sbjct: 172 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 229
Query: 515 ----MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
                  +L NLT LDL+NN I NL    L GL  +  L L  N+++
Sbjct: 230 KDIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQIS 274

>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With The Entire Ectodomain Of Its Receptor Length = 350

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 28/208 (13%)
Query: 301 RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNL-GYNRLNKLN 359
           +L  I+ GAF+G   +  + +  N +     +  +   F+ L K+H + +   N L  +N
Sbjct: 41  KLRVIQKGAFSGFGDLEKIEISQNDV----LEVIEADVFSNLPKLHEIRIEKANNLLYIN 96
Query: 360 SDTFQG--------THITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQ 411
            + FQ            T      D  K+ SL              L D  DN+N+  + 
Sbjct: 97  PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL-----------QKVLLDIQDNINI--HT 143
Query: 412 ITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPL 471
           I   S   L+++ +  L L+ N ++E+  +AF N   L  LNLS N +L  LP   F   
Sbjct: 144 IERNSFVGLSFESVI-LWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGA 201
Query: 472 KKLEVLDLAATGLKSIPQYQFDELLNLK 499
               +LD++ T + S+P Y  + L  L+
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLR 229

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 138/333 (41%), Gaps = 40/333 (12%)
Query: 195 RLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF 254
           +L D L  +  N I   +    L NL  L L +NQI  I+   LK   NL  L +  N  
Sbjct: 86  KLVDILMNN--NQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 141
Query: 255 TSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLA 314
           + I ++S  G  +L+ LS + N++  LK  + L+   LER+ +  N+++ I   A     
Sbjct: 142 SDISALS--GLTSLQQLSFSSNQVTDLKPLANLTT--LERLDISSNKVSDISVLA----- 192
Query: 315 KIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFF 374
                     +L  L S        + +  + IL         L+  +  G  +      
Sbjct: 193 ----------KLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTL 235
Query: 375 QDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN 434
                L  LDL  N + NL        L  L +  NQI+ +S  A     LT L+L+ N 
Sbjct: 236 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA-GLTALTNLELNENQ 294
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDE 494
           L+++ P   +N+  L +L L  N      PV     L++L   +   + + S+       
Sbjct: 295 LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLA-----N 347
Query: 495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDL 527
           L N+ +L   HN ++++  +   NL  +T L L
Sbjct: 348 LTNINWLSAGHNQISDLTPL--ANLTRITQLGL 378

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
           G   LN L    F    +T  +  ++  KL  + +N N + ++        L  L + +N
Sbjct: 58  GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 117
Query: 411 QITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470
           QIT +     N   L +L+LS N + ++  +A + + +L  L+ S N      P+     
Sbjct: 118 QITDIDPLK-NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLAN--- 171
Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM---------------- 514
           L  LE LD+++  +  I      +L NL+ L   +N +++I  +                
Sbjct: 172 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 229
Query: 515 ----MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
                  +L NLT LDL+NN I NL    L GL  +  L L  N+++
Sbjct: 230 KDIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQIS 274

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 23/227 (10%)
Query: 425 LTKLDLSHNNLKE--LEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA- 481
           LT LDLS N+L       T+  +   L  LN+S N       V G   L  LEVLDL+A 
Sbjct: 99  LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 482 --TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
             +G   +     D    LK+L ++ N ++   ++     +NL +LD+S+NN  +  +  
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNF-STGIPF 215
Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKL 599
           L    +++ LD+S NKL+   GD+    S+  ++             ++ P        L
Sbjct: 216 LGDCSALQHLDISGNKLS---GDF----SRAISTCTELKLLNISSNQFVGPIPPLPLKSL 268
Query: 600 KTLKLAFNKF-NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP 645
           + L LA NKF    P  L      L  +DLS N         YG +P
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-------YGAVP 308

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL-LTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
           +GL + + +L++ +N+IT +S+S L   + L  L L+ N +  +E  +F+++ +L HL+L
Sbjct: 22  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 81
Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ-FDELLNLKYLCLAH-NHLTEIP 512
           S N +LS+L    F PL  L  L+L     K++ +   F  L  L+ L + + +  T+I 
Sbjct: 82  SYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 140
Query: 513 EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
              F  L  L  L++  +++ +    SL  + ++  L L   +
Sbjct: 141 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 183

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
           ++  L SIP    + +   K L L++N +T I     +  +NL  L L++N I  +   S
Sbjct: 13  SSGSLNSIPSGLTEAV---KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 69
Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKL 599
              L S++ LDLS+N L+     +F    KP +S            T    S F+  +KL
Sbjct: 70  FSSLGSLEHLDLSYNYLSNLSSSWF----KPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 125
Query: 600 KTLKLA-FNKFNYFPKELILGLSYLQEIDLSNNQLKTID 637
           + L++   + F    ++   GL++L+E+++  + L++ +
Sbjct: 126 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 164

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 457 NAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMF 516
           N  ++ L  G FD L  L+ L   +  L +IP   FD+L  L  L L  NHL  IP   F
Sbjct: 42  NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAF 101
Query: 517 KNLLNLTYLDLSNN 530
            NL +LT++ L NN
Sbjct: 102 DNLKSLTHIYLYNN 115

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 23/227 (10%)
Query: 425 LTKLDLSHNNLKE--LEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA- 481
           LT LDLS N+L       T+  +   L  LN+S N       V G   L  LEVLDL+A 
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 482 --TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
             +G   +     D    LK+L ++ N ++   ++     +NL +LD+S+NN  +  +  
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNF-STGIPF 218
Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSXXXXXXXXXXXTYLFPSSFTIHSKL 599
           L    +++ LD+S NKL+   GD+    S+  ++             ++ P        L
Sbjct: 219 LGDCSALQHLDISGNKLS---GDF----SRAISTCTELKLLNISSNQFVGPIPPLPLKSL 271
Query: 600 KTLKLAFNKF-NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP 645
           + L LA NKF    P  L      L  +DLS N         YG +P
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-------YGAVP 311

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 138/333 (41%), Gaps = 40/333 (12%)
Query: 195 RLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF 254
           +L D L  +  N I   +    L NL  L L +NQI  I+   LK   NL  L +  N  
Sbjct: 86  KLVDILMNN--NQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 141
Query: 255 TSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLA 314
           + I ++S  G  +L+ L+ + N++  LK  + L+   LER+ +  N+++ I   A     
Sbjct: 142 SDISALS--GLTSLQQLNFSSNQVTDLKPLANLTT--LERLDISSNKVSDISVLA----- 192
Query: 315 KIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFF 374
                     +L  L S        + +  + IL         L+  +  G  +      
Sbjct: 193 ----------KLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTL 235
Query: 375 QDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN 434
                L  LDL  N + NL        L  L +  NQI+ +S  A     LT L+L+ N 
Sbjct: 236 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA-GLTALTNLELNENQ 294
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDE 494
           L+++ P   +N+  L +L L  N      PV     L++L   +   + + S+       
Sbjct: 295 LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLA-----N 347
Query: 495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDL 527
           L N+ +L   HN ++++  +   NL  +T L L
Sbjct: 348 LTNINWLSAGHNQISDLTPL--ANLTRITQLGL 378

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
           G   LN L    F    +T  +  ++  KL  + +N N + ++        L  L + +N
Sbjct: 58  GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 117
Query: 411 QITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470
           QIT +     N   L +L+LS N + ++  +A + + +L  LN S N      P+     
Sbjct: 118 QITDIDPLK-NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKPLAN--- 171
Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM---------------- 514
           L  LE LD+++  +  I      +L NL+ L   +N +++I  +                
Sbjct: 172 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 229
Query: 515 ----MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
                  +L NLT LDL+NN I NL    L GL  +  L L  N+++
Sbjct: 230 KDIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQIS 274

>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone Complexed With Its Receptor Length = 252

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 28/208 (13%)
Query: 301 RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNL-GYNRLNKLN 359
           +L  I+ GAF+G   +  + +  N +     +  +   F+ L K+H + +   N L  +N
Sbjct: 41  KLRVIQKGAFSGFGDLEKIEISQNDV----LEVIEADVFSNLPKLHEIRIEKANNLLYIN 96
Query: 360 SDTFQG--------THITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQ 411
            + FQ            T      D  K+ SL              L D  DN+N+  + 
Sbjct: 97  PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL-----------QKVLLDIQDNINI--HT 143
Query: 412 ITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPL 471
           I   S   L+++ +  L L+ N ++E+   AF N   L  LNLS N +L  LP   F   
Sbjct: 144 IERNSFVGLSFESVI-LWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGA 201
Query: 472 KKLEVLDLAATGLKSIPQYQFDELLNLK 499
               +LD++ T + S+P Y  + L  L+
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLR 229

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 141/343 (41%), Gaps = 41/343 (11%)
Query: 195 RLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF 254
           +L D L  +  N I   +    L NL  L L +NQI  I+   LK   NL  L +  N  
Sbjct: 90  KLVDILMNN--NQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 145
Query: 255 TSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLA 314
           + I ++S  G  +L+ LS   N++  LK  + L+   LER+ +  N+++ I   A     
Sbjct: 146 SDISALS--GLTSLQQLSFG-NQVTDLKPLANLTT--LERLDISSNKVSDISVLA----- 195
Query: 315 KIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFF 374
                     +L  L S        + +  + IL         L+  +  G  +      
Sbjct: 196 ----------KLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTL 238
Query: 375 QDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN 434
                L  LDL  N + NL        L  L +  NQI+ +S  A     LT L+L+ N 
Sbjct: 239 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA-GLTALTNLELNENQ 297
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDE 494
           L+++ P   +N+  L +L L  N      PV     L++L   +   + + S+       
Sbjct: 298 LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLA-----N 350
Query: 495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRV 537
           L N+ +L   HN ++++  +   NL  +T L L++    N  V
Sbjct: 351 LTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQAWTNAPV 391

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 141/343 (41%), Gaps = 41/343 (11%)
Query: 195 RLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF 254
           +L D L  +  N I   +    L NL  L L +NQI  I+   LK   NL  L +  N  
Sbjct: 91  KLVDILMNN--NQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 146
Query: 255 TSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLA 314
           + I ++S  G  +L+ LS   N++  LK  + L+   LER+ +  N+++ I   A     
Sbjct: 147 SDISALS--GLTSLQQLSFG-NQVTDLKPLANLTT--LERLDISSNKVSDISVLA----- 196
Query: 315 KIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFF 374
                     +L  L S        + +  + IL         L+  +  G  +      
Sbjct: 197 ----------KLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTL 239
Query: 375 QDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNN 434
                L  LDL  N + NL        L  L +  NQI+ +S  A     LT L+L+ N 
Sbjct: 240 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA-GLTALTNLELNENQ 298
Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDE 494
           L+++ P   +N+  L +L L  N      PV     L++L   +   + + S+       
Sbjct: 299 LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLA-----N 351
Query: 495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRV 537
           L N+ +L   HN ++++  +   NL  +T L L++    N  V
Sbjct: 352 LTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQAWTNAPV 392

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 168/446 (37%), Gaps = 119/446 (26%)
Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
           +  LD S N L  LS   F P    L  L+   NL G+    +  TS F  L NL+ L +
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGP----LSSLKYL-NLMGNPYQTLGVTSLFPNLTNLQTLRI 130
Query: 226 SD----NQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTL 281
            +    ++I+ I+     G  +L EL +      +  S SL   R +  L++  +    L
Sbjct: 131 GNVETFSEIRRID---FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187
Query: 282 K---ADSFLSQRWLE------------------------RIILRGNRLTTIEGGAFNGLA 314
               AD   S R+LE                        ++  RG+ LT     +FN L 
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT---DESFNELL 244
Query: 315 KI--HILNL-----------GYNRLNKLNSDTF-QGGAFNGLA--KIHI--------LNL 350
           K+  +IL L           G    N   SD   + G    +   ++HI        L+ 
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304
Query: 351 GYNRLNKLNSDTFQGTHITIF--SFFQDFQKLKSLDLNGNFLI-----NLESTGLEDTLD 403
            Y+ L K+   T + + + +   SF Q  + L+ LDL+ N ++     N    G   +L 
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364
Query: 404 NLNVRDNQITTLSSSA---LNYKLLTKLDLSHNNLKEL-------EPTAFTNV------- 446
            L +  N + ++  +    L  K LT LD+S N    +       E   F N+       
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV 424
Query: 447 --------------------------PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA 480
                                     P L  L +SRN  L +LP     P+  L V+ ++
Sbjct: 425 VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPV--LLVMKIS 481
Query: 481 ATGLKSIPQYQFDELLNLKYLCLAHN 506
              LKS+P   FD L +L+ + L  N
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTN 507

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	719
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-80
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-71
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-81
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-71
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-55
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-81
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-80
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-45
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-73
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-66
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-57
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-72
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-69
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-70
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-70
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-41
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-68
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-66
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-65
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-61
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-44
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-63
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-54
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-52
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-51
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-46
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-59
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-60
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-55
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-47
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-38
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-58
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-52
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-50
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-54
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-51
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-47
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-41
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-52
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-51
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-51
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-49
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-49
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-42
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-52
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-49
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-45
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-52
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-48
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-44
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-39
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-51
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-47
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-46
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-44
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-51
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-51
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-45
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-44
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-49
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-39
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-37
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-49
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-48
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-47
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-47
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-44
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-48
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-48
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-47
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-46
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-47
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-40
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-38
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-38
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-33
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-32
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-30
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-47
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-46
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-36
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-35
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-33
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-30
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-46
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-43
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-42
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-45
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-42
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-40
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-31
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-40
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-40
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-38
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-35
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-32
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-31
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-38
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-35
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-32
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-30
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-29
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-28
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-36
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-35
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-30
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-28
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-25
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-34
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-31
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-30
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-27
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-23
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-22
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-32
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-32
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-31
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-25
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-24
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-21
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-31
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-29
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-27
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-31
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-31
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-23
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-23
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-31
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-30
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-26
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-30
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-28
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-24
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-21
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-20
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-18
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-28
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-18
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-27
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-27
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-23
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-21
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-20
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-27
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-19
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-17
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-25
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-25
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-25
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-23
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-23
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-22
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-17
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-21
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-20
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-20
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-18
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-13
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-18
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-15
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-18
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-15
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-14
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-15
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-15
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-14
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-14
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-14
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-10
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	6e-07
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	1e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	3e-05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	3e-05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	1e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-04

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  303 bits (779), Expect = 2e-93
 Identities = 120/569 (21%), Positives = 220/569 (38%), Gaps = 52/569 (9%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
           +  LD   N + +L  +L       L+ L L  N          S   F    NL  L L
Sbjct: 51  LTSLDVGFNTISKLEPELCQKLPM-LKVLNLQHNELSQ-----LSDKTFAFCTNLTELHL 104

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
             N I+ I+        NL+ L + HN  +S    +      L+ L ++ N+I  LK++ 
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164

Query: 286 F--LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLA 343
               +   L+++ L  N++     G F+ + ++  L L   +L    ++           
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL--CLELANT 222

Query: 344 KIHILNLGYNRLNKLNSDTFQGTHIT---------------IFSFFQDFQKLKSLDLNGN 388
            I  L+L  ++L+  ++ TF G   T                   F    +L+   L  N
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

Query: 389 FLI-----------NLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLK 436
            +            N+    L+ +    ++    +  +   +    K L  L++  N++ 
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 437 ELEPTAFTNVPTLLHLNLSRNA-HLSSLPVGGFDPL--KKLEVLDLAATGLKSIPQYQFD 493
            ++   FT +  L +L+LS +   L +L    F  L    L +L+L    +  I    F 
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402

Query: 494 ELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS 552
            L +L+ L L  N +  E+    ++ L N+  + LS N  + L   S   +PS++RL L 
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462

Query: 553 FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYF 612
              L        +        +L  L+L+NN +  +         KL+ L L  N     
Sbjct: 463 RVALKNV---DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 613 PKE--------LILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETC 664
            K          + GLS+L  ++L +N    I    +  L  L+ ++L  NN++ +  + 
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579

Query: 665 FFNSSQLQIINLSFNRLEKLPERLFNTFL 693
           F N   L+ +NL  N +  + +++F    
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  297 bits (763), Expect = 4e-91
 Identities = 128/565 (22%), Positives = 224/565 (39%), Gaps = 53/565 (9%)

Query: 163 DIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI 222
            +     D S   L ++ D L +     +  L L  N            + F     L  
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLPT----NITVLNLTHNQL-----RRLPAANFTRYSQLTS 53

Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
           LD+  N I  +E  + +    L  L + HN  + +   +      L  L +  N I  +K
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 283 ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL 342
            + F+ Q+ L  + L  N L++ + G    L  +  L L  N++  L S+          
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD---IFAN 170

Query: 343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED-- 400
           + +  L L  N++ + +   F               +L  L LN   L    +  L    
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHA-----------IGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 401 ---TLDNLNVRDNQITTLSSSA---LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
              ++ NL++ ++Q++T S++    L +  LT LDLS+NNL  +   +F  +P L +  L
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLA---------ATGLKSIPQYQFDELLNLKYLCLAH 505
             N ++  L       L  +  L+L             L  I  + F  L  L++L +  
Sbjct: 280 EYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 506 NHLTEIPEMMFKNLLNLTYLDLSNN--NIVNLRVGSLYGLP--SMKRLDLSFNKLTTFKG 561
           N +  I   MF  L+NL YL LSN+  ++  L   +   L    +  L+L+ NK++  + 
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 562 DYFNTKSKPNTSSLEELNLNNNELTYLFP-SSFTIHSKLKTLKLAFNKFNYFPKELILGL 620
           D F+         LE L+L  NE+        +     +  + L++NK+    +     +
Sbjct: 399 DAFS-----WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 621 SYLQEIDLSNNQLKTIDDYD--YGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSF 678
             LQ + L    LK +D     +  L  L  L+L+NNNI  I++       +L+I++L  
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 679 NRLEKLPERLFNTFLYTNYDMAPNL 703
           N L +L +               +L
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHL 538

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  268 bits (688), Expect = 3e-80
 Identities = 126/532 (23%), Positives = 210/532 (39%), Gaps = 47/532 (8%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
           +  LD S N L              LQEL L++N      +            +L+ L+L
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLE-NLQELLLSNNKIQALKSEELD---IFANSSLKKLEL 178

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL---NGPRALRILSMAYNRIGTLK 282
           S NQIK    G       L  L +++ +     +  L       ++R LS++ +++ T  
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 283 ADSFLSQRW--LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFN 340
             +FL  +W  L  + L  N L  +   +F  L ++    L YN +  L S +  G    
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG---- 294

Query: 341 GLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED 400
            L  +  LNL  +   +  S             FQ  + L+ L++  N +  ++S     
Sbjct: 295 -LFNVRYLNLKRSFTKQSIS--LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 401 --TLDNLNVRDN--QITTLSSSA---LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
              L  L++ ++   + TL++     L +  L  L+L+ N + ++E  AF+ +  L  L+
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE 513
           L  N     L    +  L+ +  + L+      + +  F  + +L+ L L    L  +  
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471

Query: 514 MM--FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPN 571
               F+ L NLT LDLSNNNI N+    L GL  ++ LDL  N L               
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR------------- 518

Query: 572 TSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
                   L  +             S L  L L  N F+  P E+   L  L+ IDL  N
Sbjct: 519 --------LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570

Query: 632 QLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNS-SQLQIINLSFNRLE 682
            L T+    +     L+ LNL  N I ++ +  F  +   L  +++ FN  +
Sbjct: 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  244 bits (626), Expect = 2e-71
 Identities = 120/529 (22%), Positives = 205/529 (38%), Gaps = 54/529 (10%)

Query: 166 IRRLDFSGNALRRLSDKLFSP-HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILD 224
           ++ L  S N ++ L  +        +L++L L+ N   +     FS   FH +  L  L 
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-----FSPGCFHAIGRLFGLF 201

Query: 225 LSDNQIKA-IEEGILKGCDN--LLELRMDHNRFTSIPSVSLNG--PRALRILSMAYNRIG 279
           L++ Q+   + E +     N  +  L + +++ ++  + +  G     L +L ++YN + 
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261

Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSD----TFQ 335
            +  DSF     LE   L  N +  +   + +GL  +  LNL  +   +  S        
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 336 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL--INL 393
             +F  L  +  LN+  N +  + S+ F G              LK L L+ +F     L
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-----------LINLKYLSLSNSFTSLRTL 370

Query: 394 ESTGLED----TLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLK-ELEPTAFTNVP 447
            +          L  LN+  N+I+ + S A      L  LDL  N +  EL    +  + 
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 448 TLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQY--QFDELLNLKYLCLAH 505
            +  + LS N     L    F  +  L+ L L    LK++      F  L NL  L L++
Sbjct: 431 NIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 506 NHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR--------VGSLYGLPSMKRLDLSFNKLT 557
           N++  I + M + L  L  LDL +NN+  L         +  L GL  +  L+L  N   
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 558 TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI 617
               + F      +   L+ ++L  N L  L  S F     LK+L L  N      K++ 
Sbjct: 550 EIPVEVF-----KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

Query: 618 L-GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCF 665
                 L E+D+  N      +        +  +N  + NI  +S    
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCE---SIAWFVNWINETHTNIPELSSHYL 650

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  296 bits (760), Expect = 2e-91
 Identities = 117/541 (21%), Positives = 211/541 (39%), Gaps = 45/541 (8%)

Query: 163 DIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI 222
               +  +     L  +   L +    + + L  + N+   ++      + F  L+NL  
Sbjct: 11  KEVNKTYNCENLGLNEIPGTLPN----STECLEFSFNVL-PTIQN----TTFSRLINLTF 61

Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
           LDL+  QI  I E   +    L  L +  N    +   +L+GP+AL+ L      I ++ 
Sbjct: 62  LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121

Query: 283 ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL 342
                +Q+ LE + L  N +++I+        K+ +L+   N ++ L+ +          
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS--LQQA 179

Query: 343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDT- 401
             +  LNL  N +  +    F                 +SL+  G   + +   GL+++ 
Sbjct: 180 TNLS-LNLNGNDIAGIEPGAFDSAV------------FQSLNFGGTQNLLVIFKGLKNST 226

Query: 402 ---LDNLNVRDNQITTLSSSA---LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
              L      D     +S +    L    +  ++L  +    +    F     L  L+L+
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHL-TEIPEM 514
              HLS LP  G   L  L+ L L+A   +++ Q       +L +L +  N    E+   
Sbjct: 287 AT-HLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 515 MFKNLLNLTYLDLSNNNI--VNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT 572
             +NL NL  LDLS+++I   +     L  L  ++ L+LS+N+  + K + F        
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-----EC 399

Query: 573 SSLEELNLNNNELTYLFP-SSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
             LE L+L    L      S F     LK L L+ +  +   ++L  GL  LQ ++L  N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 632 QLKTIDDYDYG---YLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERL 688
                +         L RL  L L+  ++ +I +  F +   +  ++LS NRL       
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

Query: 689 F 689
            
Sbjct: 520 L 520

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  286 bits (733), Expect = 1e-87
 Identities = 114/552 (20%), Positives = 207/552 (37%), Gaps = 45/552 (8%)

Query: 154 LPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSE 213
           +P  + +S       L+FS N L  + +  FS   + L  L L                 
Sbjct: 27  IPGTLPNS----TECLEFSFNVLPTIQNTTFSRLIN-LTFLDLTRCQIYW-----IHEDT 76

Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
           F     L  L L+ N +  + E  L G   L  L       +SI  + L+  + L  L +
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136

Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHI--LNLGYNRLNKLNS 331
             N I ++K         L+ +  + N +  +     + L +     LNL  N +  +  
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196

Query: 332 DTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLI 391
             F        A    LN G  +   +     + + I         Q L           
Sbjct: 197 GAFD------SAVFQSLNFGGTQNLLVIFKGLKNSTI---------QSLWLGTFEDMDDE 241

Query: 392 NLESTGLED----TLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNV 446
           ++     E     +++++N++ +    +SS+    +  L +LDL+  +L EL P+    +
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGL 300

Query: 447 PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK-SIPQYQFDELLNLKYLCLAH 505
            TL  L LS N    +L          L  L +     +  +     + L NL+ L L+H
Sbjct: 301 STLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 506 NHLTEIP--EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDY 563
           + +       +  +NL +L  L+LS N  ++L+  +    P ++ LDL+F +L       
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 564 FNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKF---NYFPKELILGL 620
                  N   L+ LNL+++ L       F     L+ L L  N F   N      +  L
Sbjct: 420 PFQ----NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475

Query: 621 SYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNR 680
             L+ + LS   L +ID + +  L  +  ++L++N + + S     +   +  +NL+ N 
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNH 534

Query: 681 LEKLPERLFNTF 692
           +  +   L    
Sbjct: 535 ISIILPSLLPIL 546

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  268 bits (687), Expect = 8e-81
 Identities = 120/549 (21%), Positives = 200/549 (36%), Gaps = 41/549 (7%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
           +  LD +   +  + +  F      L  L L  N          + +   G   L+ L  
Sbjct: 59  LTFLDLTRCQIYWIHEDTFQSQHR-LDTLVLTANPLIF-----MAETALSGPKALKHLFF 112

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
               I +I+   L     L  L +  N  +SI          L++L    N I  L  + 
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172

Query: 286 F--LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLA 343
              L Q     + L GN +  IE GAF+       LN G  +   +    F+G   + + 
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSA-VFQSLNFGGTQNLLV---IFKGLKNSTIQ 228

Query: 344 KIHILNLGYNRLNKLNSDTFQG---THITIFSF------------FQDFQKLKSLDLNGN 388
            + +          ++   F+G     +   +             F  F  L+ LDL   
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288

Query: 389 FLINLES--TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLK-ELEPTAFT 444
            L  L S   GL  TL  L +  N+   L   +  N+  LT L +  N  + EL      
Sbjct: 289 HLSELPSGLVGL-STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347

Query: 445 NVPTLLHLNLSRNA-HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCL 503
           N+  L  L+LS +    S         L  L+ L+L+     S+    F E   L+ L L
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407

Query: 504 AHNHLTEI-PEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGD 562
           A   L     +  F+NL  L  L+LS++ +         GLP+++ L+L  N        
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 563 YFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSY 622
             N+        LE L L+  +L+ +   +FT    +  + L+ N+      E +  L  
Sbjct: 468 KTNSLQ--TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525

Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682
           +  ++L++N +  I       L + R +NL  N +D      +F    L+    +  +LE
Sbjct: 526 IY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYF----LEWYKENMQKLE 580

Query: 683 KLPERLFNT 691
              + L   
Sbjct: 581 DTEDTLCEN 589

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  217 bits (554), Expect = 6e-62
 Identities = 97/497 (19%), Positives = 172/497 (34%), Gaps = 53/497 (10%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI--L 223
           +  L    N +  +      P    L+ L   +N          S  +   L       L
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEK-LKVLDFQNNAIHY-----LSKEDMSSLQQATNLSL 184

Query: 224 DLSDNQIKAIEEGILKGCDNLLELRMDHNRFT--SIPSVSLNGPRALRILSMAYNRIGTL 281
           +L+ N I  IE G          L     +        +  +  ++L + +        +
Sbjct: 185 NLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 282 KADSF--LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
               F  L +  +E I L+ +    I    F+  + +  L+L    L++L S        
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS------GL 297

Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTH--------------ITIFSFFQDFQKLKSLDL 385
            GL+ +  L L  N+   L   +                          ++ + L+ LDL
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357

Query: 386 NGNFLINLESTGLEDT----LDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEP 440
           + + +   +   L+      L +LN+  N+  +L + A      L  LDL+   LK  + 
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417

Query: 441 -TAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA---TGLKSIPQYQFDELL 496
            + F N+  L  LNLS +  L       FD L  L+ L+L                  L 
Sbjct: 418 QSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476

Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
            L+ L L+   L+ I +  F +L  + ++DLS+N + +  + +L  L     L+L+ N +
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG-IYLNLASNHI 535

Query: 557 TTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKEL 616
           +            P  S    +NL  N L      + +    L+  K    K       L
Sbjct: 536 SIILPSLL-----PILSQQRTINLRQNPLD----CTCSNIYFLEWYKENMQKLEDTEDTL 586

Query: 617 ILGLSYLQEIDLSNNQL 633
                 L+ + LS+  L
Sbjct: 587 CENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  175 bits (446), Expect = 5e-47
 Identities = 80/410 (19%), Positives = 153/410 (37%), Gaps = 49/410 (11%)

Query: 151 HQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFS 210
             I P       ++ +  ++   +    +S   F      LQEL L        L+ +  
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG-LQELDLTAT----HLSEL-- 293

Query: 211 TSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHN-RFTSIPSVSLNGPRALR 269
            S   GL  L+ L LS N+ + + +       +L  L +  N +   + +  L     LR
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 270 ILSMAYNRIGTL--KADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN 327
            L ++++ I T         +   L+ + L  N   +++  AF    ++ +L+L + RL 
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413

Query: 328 KLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNG 387
             ++       F  L  + +LNL ++ L+  +   F G              L+ L+L G
Sbjct: 414 VKDAQ----SPFQNLHLLKVLNLSHSLLDISSEQLFDGL-----------PALQHLNLQG 458

Query: 388 NFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVP 447
           N      +    ++L  L                   L  L LS  +L  ++  AFT++ 
Sbjct: 459 NHFPKG-NIQKTNSLQTL-----------------GRLEILVLSFCDLSSIDQHAFTSLK 500

Query: 448 TLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNH 507
            + H++LS N  L+S  +     LK +  L+LA+  +  I       L   + + L  N 
Sbjct: 501 MMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558

Query: 508 LTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
           L      ++     L +   +   + +         P ++ + LS   L+
Sbjct: 559 LDCTCSNIY----FLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  109 bits (275), Expect = 4e-25
 Identities = 32/190 (16%), Positives = 69/190 (36%), Gaps = 32/190 (16%)

Query: 503 LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGD 562
             +  L EIP  +  +      L+ S N +  ++  +   L ++  LDL+  ++     D
Sbjct: 19  CENLGLNEIPGTLPNST---ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 563 YFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSY 622
            F      +   L+ L L  N L ++  ++ +                        G   
Sbjct: 76  TFQ-----SQHRLDTLVLTANPLIFMAETALS------------------------GPKA 106

Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682
           L+ +      + +ID         L  L L +N+I +I     F + +L++++   N + 
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 683 KLPERLFNTF 692
            L +   ++ 
Sbjct: 167 YLSKEDMSSL 176

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  275 bits (704), Expect = 3e-81
 Identities = 122/555 (21%), Positives = 214/555 (38%), Gaps = 41/555 (7%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
             RL  S N +R ++   F      LQ L L       +++       F  L NLRILDL
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQ-LQLLELGSQYTPLTIDK----EAFRNLPNLRILDL 80

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTS--IPSVSLNGPRALRILSMAYNRIGTLKA 283
             ++I  +     +G  +L ELR+     +   +        +AL  L ++ N+I +L  
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 284 -DSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIH--ILNLGYNRLNKLNSDTFQG--GA 338
             SF     L+ I    N++  +       L        +L  N L    S  +      
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 339 FNGLAKIHILNLGYNRLNKLNSDTF-QGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
           F  +  + IL++  N      +  F      +          +       + + + +   
Sbjct: 201 FRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 398 LED----TLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHL 452
                  ++ +L++    + +L+S      K L  L+L++N + ++   AF  +  L  L
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319

Query: 453 NLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIP 512
           NLS N  L  L    F  L K+  +DL    +  I    F  L  L+ L L  N LT I 
Sbjct: 320 NLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378

Query: 513 EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT 572
                 + ++  + LS N +V L   +L    +   + LS N+L      YF        
Sbjct: 379 -----FIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLL----RV 425

Query: 573 SSLEELNLNNNELTYLFPSS-FTIHSKLKTLKLAFNKFNY-----FPKELILGLSYLQEI 626
             L+ L LN N  +        + +  L+ L L  N            ++  GLS+LQ +
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485

Query: 627 DLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686
            L++N L ++    + +L  LR L+LN+N +  +S      +  L+I+++S N+L     
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRNQLLAPNP 543

Query: 687 RLFNTFLYTNYDMAP 701
            +F +    +     
Sbjct: 544 DVFVSLSVLDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  247 bits (631), Expect = 6e-71
 Identities = 100/490 (20%), Positives = 180/490 (36%), Gaps = 38/490 (7%)

Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFT-SIPSVSLNGPRALRILS 272
              L     L LS N I+ +        + L  L +       +I   +      LRIL 
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 273 MAYNRIGTLKADSFLSQRWLERIILRGNRLT--TIEGGAFNGLAKIHILNLGYNRLNKLN 330
           +  ++I  L  D+F     L  + L    L+   ++ G F  L  +  L+L  N++  L 
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 331 SDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL 390
                  +F  L  +  ++   N++  +     +               L    L  N L
Sbjct: 140 L----HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK---------TLSFFSLAANSL 186

Query: 391 INLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLL 450
            +  S      ++       +I  +S +      +       N + + +  +      ++
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWT---VDITGNFSNAISKSQAFSLILAHHIM 243

Query: 451 HLNLSRNAHLSSLPVGGFDPLKK--LEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHL 508
                 + ++       F  L +  +  LDL+   + S+    F+ L +LK L LA+N +
Sbjct: 244 GAGFGFH-NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

Query: 509 TEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKS 568
            +I +  F  L NL  L+LS N +  L   + YGLP +  +DL  N +   +   F    
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK--- 359

Query: 569 KPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDL 628
                 L+ L+L +N LT     +      +  + L+ NK    PK  +        I L
Sbjct: 360 --FLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHL 408

Query: 629 SNNQLKTIDD-YDYGYLPRLRKLNLNNNNIDAISETCFF-NSSQLQIINLSFNRLEKLPE 686
           S N+L+ +D  Y    +P L+ L LN N   + S       +  L+ + L  N L+   E
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468

Query: 687 RLFNTFLYTN 696
                 ++  
Sbjct: 469 TELCWDVFEG 478

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  203 bits (517), Expect = 2e-55
 Identities = 104/462 (22%), Positives = 182/462 (39%), Gaps = 68/462 (14%)

Query: 166 IRRLDFSGNALRRLSDKLFSP-HRDTLQELRLADNLFGDSLNPIFSTS-EFHGLVNLRIL 223
           ++ +DFS N +  + +    P    TL    LA N     ++  +         + L IL
Sbjct: 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209

Query: 224 DLSDNQIKAIEEGI------------LKGCDNLLELRMDHNRFTSIPSVSLNG--PRALR 269
           D+S N       G             L    +++      +        +  G    ++R
Sbjct: 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269

Query: 270 ILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKL 329
            L +++  + +L +  F + + L+ + L  N++  I   AF GL  + +LNL YN L +L
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329

Query: 330 NSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNF 389
            S  F G     L K+  ++L  N +  +   TF+             +KL++LDL  N 
Sbjct: 330 YSSNFYG-----LPKVAYIDLQKNHIAIIQDQTFKF-----------LEKLQTLDLRDNA 373

Query: 390 LINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF-TNVPT 448
           L  +       ++ ++ +  N++ TL    L       + LS N L+ L+   F   VP 
Sbjct: 374 LTTIHFI---PSIPDIFLSGNKLVTLPKINLT---ANLIHLSENRLENLDILYFLLRVPH 427

Query: 449 LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHL 508
           L  L L++N   S            LE L L    L+   +                   
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE------------------- 468

Query: 509 TEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKS 568
           TE+   +F+ L +L  L L++N + +L  G    L +++ L L+ N+LT    +      
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL---- 524

Query: 569 KPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN 610
               ++LE L+++ N+L    P  F     L  L +  NKF 
Sbjct: 525 ---PANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  180 bits (457), Expect = 1e-47
 Identities = 89/408 (21%), Positives = 143/408 (35%), Gaps = 60/408 (14%)

Query: 160 SSSDIPIRRLDFSGNALRRLSDKLFS--PHRDTLQELRLADNLFGDSLNP----IFSTSE 213
              ++ +  LD SGN         FS    +     L LA ++ G             + 
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 214 FHGLV--NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRIL 271
           F GL   ++R LDLS   + ++   + +   +L  L + +N+   I   +  G   L++L
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319

Query: 272 SMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNS 331
           +++YN +G L + +F     +  I L+ N +  I+   F  L K+  L+L  N L  +  
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-- 377

Query: 332 DTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLI 391
                   + +  I  + L  N+L  L                        + L+ N L 
Sbjct: 378 --------HFIPSIPDIFLSGNKLVTLPKINLTANL---------------IHLSENRLE 414

Query: 392 NLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTA-FTNVPTLL 450
           NL+                         L    L  L L+ N           +  P+L 
Sbjct: 415 NLDI--------------------LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE 454

Query: 451 HLNLSRN----AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
            L L  N    A  + L    F+ L  L+VL L    L S+P   F  L  L+ L L  N
Sbjct: 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514

Query: 507 HLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
            LT +         NL  LD+S N ++         L  +      F 
Sbjct: 515 RLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFVSLSVLDITHNKFI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  268 bits (688), Expect = 6e-81
 Identities = 107/562 (19%), Positives = 205/562 (36%), Gaps = 53/562 (9%)

Query: 160 SSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
               +P          L ++ D + S    + + + L+ N     L        F     
Sbjct: 7   CIEVVPNITYQCMDQKLSKVPDDIPS----STKNIDLSFNPL-KILKS----YSFSNFSE 57

Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
           L+ LDLS  +I+ IE+    G  +L  L +  N   S    S +G  +L  L     ++ 
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 280 TLKADSFLSQRWLERIILRGNRLTTIE-GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
           +L++        L+++ +  N + + +    F+ L  +  ++L YN +  +  +  Q   
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-L 176

Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIF-------------SFFQDFQKLKSLDL 385
                    L++  N ++ +    FQG  +                +  Q+   L    L
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 386 NGNFL-----INLESTGLEDTLDNLNVRD-----NQITTLSSSAL-NYKLLTKLDLSHNN 434
                     + +    + + L ++ + +         +           ++ + L+  +
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 435 LKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDE 494
           +K LE            L++ R   L   P      L  L+ L L         +     
Sbjct: 297 IKYLEDVPKHF--KWQSLSIIRC-QLKQFP---TLDLPFLKSLTLTMNKGSISFK--KVA 348

Query: 495 LLNLKYLCLAHNHLTEIPEMMFKNL--LNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS 552
           L +L YL L+ N L+      + +L   +L +LDLS N    +   +  GL  ++ LD  
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQ 407

Query: 553 FNKLTTF-KGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNY 611
            + L    +   F      +   L  L+++       F   F   + L TLK+A N F  
Sbjct: 408 HSTLKRVTEFSAFL-----SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462

Query: 612 F-PKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQ 670
                +    + L  +DLS  QL+ I    +  L RL+ LN+++NN+  +  + +     
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 671 LQIINLSFNRLEKLPERLFNTF 692
           L  ++ SFNR+E     L +  
Sbjct: 523 LSTLDCSFNRIETSKGILQHFP 544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  266 bits (681), Expect = 5e-80
 Identities = 119/544 (21%), Positives = 200/544 (36%), Gaps = 54/544 (9%)

Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
           + LD S   +  + DK +      L  L L  N         FS   F GL +L  L   
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHH-LSNLILTGNPIQS-----FSPGSFSGLTSLENLVAV 112

Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIP-SVSLNGPRALRILSMAYNRIGTLKADS 285
           + ++ ++E   +     L +L + HN   S       +    L  + ++YN I T+  + 
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

Query: 286 F----LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
                 + +    + +  N +  I+  AF G+ K+H L L  N      S          
Sbjct: 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFN----SSNIMKTCLQN 227

Query: 342 LAKIHILNLGYNRLNKLNS------DTFQG-----------THITIFS----FFQDFQKL 380
           LA +H+  L         +         +G           T+   FS     F     +
Sbjct: 228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287

Query: 381 KSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEP 440
            ++ L G  +  LE         +L++   Q+    +  L +  L  L L+ N       
Sbjct: 288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF--LKSLTLTMNKGSISFK 345

Query: 441 TAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLK--KLEVLDLAATGLKSIPQYQFDELLNL 498
                +P+L +L+LSRN  LS      +  L    L  LDL+  G   +    F  L  L
Sbjct: 346 --KVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFMGLEEL 401

Query: 499 KYLCLAHNHLTEIPEM-MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
           ++L   H+ L  + E   F +L  L YLD+S  N      G   GL S+  L ++ N   
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 558 TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI 617
                        NT++L  L+L+  +L  +    F    +L+ L ++ N   +      
Sbjct: 462 DNTLSNVFA----NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517

Query: 618 LGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFF----NSSQLQI 673
             L  L  +D S N+++T       +   L   NL NN++  I E   F       +  +
Sbjct: 518 NQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFL 577

Query: 674 INLS 677
           +N+ 
Sbjct: 578 VNVE 581

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  173 bits (440), Expect = 3e-46
 Identities = 69/409 (16%), Positives = 125/409 (30%), Gaps = 58/409 (14%)

Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
               +L+ +     +       ++L +N L  L S      +F+  +++  L+L    + 
Sbjct: 18  CMDQKLSKVPDDIPSST---KNIDLSFNPLKILKSY-----SFSNFSELQWLDLSRCEIE 69

Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
            +    + G              L +L L GN + +        +   L           
Sbjct: 70  TIEDKAWHG-----------LHHLSNLILTGNPIQSFS----PGSFSGL----------- 103

Query: 417 SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGG-FDPLKKLE 475
                   L  L      L  LE      + TL  LN++ N  + S  +   F  L  L 
Sbjct: 104 ------TSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLV 156

Query: 476 VLDLAATGLKSIPQYQFDELLNLK----YLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNN 531
            +DL+   +++I       L         L ++ N +  I +  F+ +  L  L L  N 
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNF 215

Query: 532 -IVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT---SSLEELNLNNNELTY 587
              N+    L  L  +    L   +    +       S        +++E  L       
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275

Query: 588 LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRL 647
                F   + +  + LA     Y     +      Q + +   QLK     D   LP L
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQFPTLD---LPFL 330

Query: 648 RKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTN 696
           + L L  N      +        L  ++LS N L       ++     +
Sbjct: 331 KSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  169 bits (431), Expect = 4e-45
 Identities = 56/301 (18%), Positives = 114/301 (37%), Gaps = 15/301 (4%)

Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLP 464
               D +++ +     +      +DLS N LK L+  +F+N   L  L+LSR   + ++ 
Sbjct: 16  YQCMDQKLSKVPDDIPSS--TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIE 72

Query: 465 VGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTY 524
              +  L  L  L L    ++S     F  L +L+ L      L  +       L+ L  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 525 LDLSNNNIVNLRV-GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
           L++++N I + ++      L ++  +DLS+N + T   +      + N      L+++ N
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE-NPQVNLSLDMSLN 191

Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYF-PKELILGLSYLQEIDLS------NNQLKTI 636
            + ++   +F    KL  L L  N  +    K  +  L+ L    L          L+  
Sbjct: 192 PIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 637 DDYDYGYLPRLRK--LNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLY 694
           +      L  +      L   N  +     F   + +  ++L+   ++ L +   +    
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQ 310

Query: 695 T 695
           +
Sbjct: 311 S 311

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  247 bits (633), Expect = 1e-73
 Identities = 100/516 (19%), Positives = 186/516 (36%), Gaps = 46/516 (8%)

Query: 162 SDIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
           S +   ++ LD S N +  +         + LQ L L  +              F+ L +
Sbjct: 22  SGLTAAMKSLDLSFNKITYIGHGDLRACAN-LQVLILKSSRINT-----IEGDAFYSLGS 75

Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL-NGPRALRILSMA-YNR 277
           L  LDLSDN + ++         +L  L +  N + ++   SL      L+ L +     
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
              ++   F     L  + ++   L   +  +   +  IH L L  +    L        
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE-----I 190

Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
             + L+ +  L L    L +          ++       F+     D + N L+ L    
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

Query: 398 LEDT-LDNLNVRDNQITTLSS---------SALNYKLLTKLDLSHNNLKELEPTAFTNVP 447
           LE + ++  +   N +   +            +    + +L +    L     T ++ + 
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310

Query: 448 TLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ---FDELLNLKYLCLA 504
            +  + +  +  +  +P      LK LE LDL+   +               +L+ L L+
Sbjct: 311 KVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 505 HNHLTEIPEM--MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGD 562
            NHL  + +   +   L NLT LD+S N    +   S      M+ L+LS   +   K  
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVVKTC 428

Query: 563 YFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSY 622
                      +LE L+++NN L            +L+ L ++ NK    P   +     
Sbjct: 429 IP--------QTLEVLDVSNNNLDSFSLFL----PRLQELYISRNKLKTLPDASL--FPV 474

Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
           L  + +S NQLK++ D  +  L  L+K+ L+ N  D
Sbjct: 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  227 bits (581), Expect = 3e-66
 Identities = 91/493 (18%), Positives = 180/493 (36%), Gaps = 51/493 (10%)

Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
             + D       +I  G+      +  L +  N+ T I    L     L++L +  +RI 
Sbjct: 7   SGVCDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
           T++ D+F S   LE + L  N L+++    F  L+ +  LNL  N    L         F
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT----SLF 119

Query: 340 NGLAKIHILNLG-YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGL 398
             L  +  L +G     +++    F G              L  L++    L N +S  L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAG-----------LTSLNELEIKALSLRNYQSQSL 168

Query: 399 ED--TLDNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
           +    + +L +  ++   L     +    +  L+L   NL   + +          +   
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228

Query: 456 RNAHLS-----------------SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
                                   L    FD      + D   +    + +    E + +
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288

Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
           + L +   +L      ++  L  +  + + N+ +  +       L S++ LDLS N +  
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHS--KLKTLKLAFNKFNYFPKEL 616
                 N+  K    SL+ L L+ N L  +  +   + +   L +L ++ N F+  P   
Sbjct: 349 EYLK--NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS- 405

Query: 617 ILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINL 676
                 ++ ++LS+  ++ +          L  L+++NNN+D+ S        +LQ + +
Sbjct: 406 CQWPEKMRFLNLSSTGIRVVKT---CIPQTLEVLDVSNNNLDSFSL----FLPRLQELYI 458

Query: 677 SFNRLEKLPERLF 689
           S N+L+ LP+   
Sbjct: 459 SRNKLKTLPDASL 471

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  203 bits (518), Expect = 2e-57
 Identities = 84/456 (18%), Positives = 162/456 (35%), Gaps = 57/456 (12%)

Query: 241 CDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGN 300
           CD           FTSIPS       A++ L +++N+I  +      +   L+ +IL+ +
Sbjct: 4   CDASGVCDGRSRSFTSIPS---GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 301 RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNS 360
           R+ TIEG AF  L  +  L+L  N L+ L+S       F  L+ +  LNL  N       
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-----SWFGPLSSLKYLNLMGNPY----- 110

Query: 361 DTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL 420
                  + + S F +   L++L +                           + +     
Sbjct: 111 -----QTLGVTSLFPNLTNLQTLRIGNV---------------------ETFSEIRRIDF 144

Query: 421 NY-KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
                L +L++   +L+  +  +  ++  + HL L  +   + L     D L  +  L+L
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLEL 203

Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
             T L                +       + + +  F  LL L    L  + +       
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV------E 257

Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKL 599
                     D + ++             K  T ++  L++    L Y   + +++  K+
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSEL-----GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTI---DDYDYGYLPRLRKLNLNNNN 656
           K + +  +K    P      L  L+ +DLS N +      +    G  P L+ L L+ N+
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 657 IDAISETC--FFNSSQLQIINLSFNRLEKLPERLFN 690
           + ++ +T         L  +++S N    +P+    
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW 408

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  137 bits (347), Expect = 2e-34
 Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 9/243 (3%)

Query: 452 LNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEI 511
            +       +S+P G       ++ LDL+   +  I         NL+ L L  + +  I
Sbjct: 10  CDGRSR-SFTSIPSGLTA---AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65

Query: 512 PEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPN 571
               F +L +L +LDLS+N++ +L       L S+K L+L  N   T           PN
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF----PN 121

Query: 572 TSSLEELNL-NNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSN 630
            ++L+ L + N    + +    F   + L  L++       +  + +  +  +  + L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 631 NQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
           ++   + +     L  +R L L + N+     +          +     R   L +  FN
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 691 TFL 693
             L
Sbjct: 242 ELL 244

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  120 bits (302), Expect = 1e-28
 Identities = 43/289 (14%), Positives = 99/289 (34%), Gaps = 35/289 (12%)

Query: 153 ILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTS 212
           IL +      D  +  L     +   +  +L      T++ L +        L+ ++S  
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS-- 307

Query: 213 EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIP---SVSLNGPRALR 269
               L  ++ + + ++++  +     +   +L  L +  N         S       +L+
Sbjct: 308 ---LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364

Query: 270 ILSMAYNRIGTLK--ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN 327
            L ++ N + +++   +  L+ + L  + +  N    +         K+  LNL    + 
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIR 423

Query: 328 KLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNG 387
            + +   Q         + +L++  N L+               SF     +L+ L ++ 
Sbjct: 424 VVKTCIPQ--------TLEVLDVSNNNLD---------------SFSLFLPRLQELYISR 460

Query: 388 NFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNL 435
           N L  L    L   L  + +  NQ+ ++          L K+ L  N  
Sbjct: 461 NKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  244 bits (625), Expect = 2e-72
 Identities = 104/541 (19%), Positives = 206/541 (38%), Gaps = 40/541 (7%)

Query: 163 DIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI 222
            +P            ++ D L      + + L L+ N     L        F     L++
Sbjct: 6   VVPNITYQCMELNFYKIPDNLPF----STKNLDLSFNPL-RHLGS----YSFFSFPELQV 56

Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
           LDLS  +I+ IE+G  +   +L  L +  N   S+   + +G  +L+ L      + +L+
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 283 ADSFLSQRWLERIILRGNRLTTIE-GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
                  + L+ + +  N + + +    F+ L  +  L+L  N++  +     +      
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 342 LAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDT 401
           L  +  L+L  N +N +    F+   +   +   +F    SL++    +  L    +   
Sbjct: 177 LLNLS-LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD---SLNVMKTCIQGLAGLEVHRL 232

Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELE------PTAFTNVPTLLHLNLS 455
           +      +  +     SAL    L  L +    L  L+         F  +  +   +L 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEG--LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
                           + LE+++          Q+   +L +LK L    N         
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNC------KFGQFPTLKLKSLKRLTFTSNKGGNAFS-- 342

Query: 516 FKNLLNLTYLDLSNNNI--VNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTS 573
             +L +L +LDLS N +        S +G  S+K LDLSFN + T   ++          
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF------LGLE 396

Query: 574 SLEELNLNNNELTYLFPSSFTIH-SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
            LE L+  ++ L  +   S  +    L  L ++          +  GLS L+ + ++ N 
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 633 LK-TIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT 691
            +       +  L  L  L+L+   ++ +S T F + S LQ++N++ N+L+ +P+ +F+ 
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

Query: 692 F 692
            
Sbjct: 517 L 517

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  236 bits (605), Expect = 2e-69
 Identities = 106/497 (21%), Positives = 185/497 (37%), Gaps = 51/497 (10%)

Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
           + LD S   ++ + D  +      L  L L  N          +   F GL +L+ L   
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQS-----LALGAFSGLSSLQKLVAV 108

Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIP-SVSLNGPRALRILSMAYNRIGTLKADS 285
           +  + ++E   +     L EL + HN   S       +    L  L ++ N+I ++    
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 286 FLSQRWLE----RIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
                 +      + L  N +  I+ GAF  + ++H L L  N      S         G
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD----SLNVMKTCIQG 223

Query: 342 LAKIHILNL------GYNRLNKLNSDTFQG----------------THITIFSFFQDFQK 379
           LA + +  L          L K +    +G                    I   F     
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 380 LKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELE 439
           + S  L    +  ++         +L + + +     +  L    L +L  + N      
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS--LKRLTFTSNKGGNA- 340

Query: 440 PTAFTNVPTLLHLNLSRNA-HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
             +  ++P+L  L+LSRN                 L+ LDL+  G+ ++    F  L  L
Sbjct: 341 -FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQL 398

Query: 499 KYLCLAHNHLTEIPEM-MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
           ++L   H++L ++ E  +F +L NL YLD+S+ +      G   GL S++ L ++ N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 558 -TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKEL 616
             F  D F         +L  L+L+  +L  L P++F   S L+ L +A N+    P  +
Sbjct: 459 ENFLPDIFT-----ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513

Query: 617 ILGLSYLQEIDLSNNQL 633
              L+ LQ+I L  N  
Sbjct: 514 FDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  166 bits (421), Expect = 6e-44
 Identities = 75/386 (19%), Positives = 137/386 (35%), Gaps = 39/386 (10%)

Query: 159 FSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLV 218
                +    LD S N +  +    F   R  L +L L +N    ++          GL 
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR--LHKLTLRNNFDSLNVMKTC----IQGLA 225

Query: 219 NLRILDL------SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSV---SLNGPRALR 269
            L +  L      ++  ++  ++  L+G  NL                     N    + 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 270 ILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKL 329
             S+    I  +K  S+      + + L   +           L +   L    N+    
Sbjct: 286 SFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKSLKR---LTFTSNKGGNA 340

Query: 330 NSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNF 389
            S          L  +  L+L  N L+     +                 LK LDL+ N 
Sbjct: 341 FS-------EVDLPSLEFLDLSRNGLSFKGCCSQS---------DFGTTSLKYLDLSFNG 384

Query: 390 LINLESTGLEDT-LDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNV 446
           +I + S  L    L++L+ + + +  +S  ++   L  L  LD+SH + +      F  +
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 447 PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
            +L  L ++ N+   +     F  L+ L  LDL+   L+ +    F+ L +L+ L +A N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504

Query: 507 HLTEIPEMMFKNLLNLTYLDLSNNNI 532
            L  +P+ +F  L +L  + L  N  
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  152 bits (385), Expect = 3e-39
 Identities = 74/347 (21%), Positives = 127/347 (36%), Gaps = 41/347 (11%)

Query: 381 KSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELE 439
            +          +    L  +  NL++  N +  L S +  ++  L  LDLS   ++ +E
Sbjct: 10  ITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK 499
             A+ ++  L  L L+ N  + SL +G F  L  L+ L    T L S+  +    L  LK
Sbjct: 69  DGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 500 YLCLAHNHLTEIPE-MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK----RLDLSFN 554
            L +AHN +        F NL NL +LDLS+N I ++    L  L  M      LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 555 KLTTFKGDYF--------------NTKSKPNT-----SSLEELNL------NNNELTYLF 589
            +   +   F              ++ +   T     + LE   L      N   L    
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 590 PSSFTIHSKLKTLKLAFNKFNYFPKELIL---GLSYLQEIDLSNNQLKTIDDYDYGYLPR 646
            S+      L   +      +Y+  ++I     L+ +    L +  ++ + D+ Y     
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFG 305

Query: 647 LRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693
            + L L N            +   L+ +  + N+       +    L
Sbjct: 306 WQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSEVDLPSL 349

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  239 bits (613), Expect = 3e-70
 Identities = 107/522 (20%), Positives = 188/522 (36%), Gaps = 50/522 (9%)

Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
           + LD S   ++ + D  +      L  L L  N          +   F GL +L+ L   
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSH-LSTLILTGNPIQS-----LALGAFSGLSSLQKLVAV 108

Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIP-SVSLNGPRALRILSMAYNRIGTLKADS 285
           +  + ++E   +     L EL + HN   S       +    L  L ++ N+I ++    
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 286 FLS----QRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
                        + L  N +  I+ GAF  + ++H L L  N      S         G
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD----SLNVMKTCIQG 223

Query: 342 LAKIHILNLGYNRLN------KLNSDTFQG----------------THITIFSFFQDFQK 379
           LA + +  L            K +    +G                    I   F     
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 380 LKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELE 439
           + S  L    +  ++         +L + + +     +  L     +   L+  + K   
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTSNKGGN 339

Query: 440 PTAFTNVPTLLHLNLSRNAH-LSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
             +  ++P+L  L+LSRN                 L+ LDL+  G+ ++    F  L  L
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQL 398

Query: 499 KYLCLAHNHLTE-IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
           ++L   H++L +     +F +L NL YLD+S+ +      G   GL S++ L ++ N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 558 TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI 617
                 F         +L  L+L+  +L  L P++F   S L+ L ++ N F        
Sbjct: 459 EN----FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 618 LGLSYLQEIDLSNNQLKTIDDYDYGYLPR-LRKLNLNNNNID 658
             L+ LQ +D S N + T    +  + P  L  LNL  N+  
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  239 bits (612), Expect = 5e-70
 Identities = 104/560 (18%), Positives = 203/560 (36%), Gaps = 52/560 (9%)

Query: 163 DIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI 222
            +P            ++ D L      + + L L+ N      +       F     L++
Sbjct: 6   VVPNITYQCMELNFYKIPDNLPF----STKNLDLSFNPLRHLGS-----YSFFSFPELQV 56

Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
           LDLS  +I+ IE+G  +   +L  L +  N   S+   + +G  +L+ L      + +L+
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 283 ADSFLSQRWLERIILRGNRLTTIE-GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
                  + L+ + +  N + + +    F+ L  +  L+L  N++  +     +      
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 342 LAKIHILNLGYNRLNKLNSDTFQGTHITIF-------------SFFQDFQKLKSLDLNGN 388
           L  +  L+L  N +N +    F+   +                +  Q    L+   L   
Sbjct: 177 LLNLS-LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 389 FLINLE-----STGLEDTLDNLNVRDNQITTLSSSAL-------NYKLLTKLDLSHNNLK 436
              N            + L NL + + ++  L                ++   L    ++
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
            ++   F+      HL L         P      LK+L           S       +L 
Sbjct: 296 RVKD--FSYNFGWQHLELVNC-KFGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLP 347

Query: 497 NLKYLCLAHNHLT--EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
           +L++L L+ N L+             +L YLDLS N ++ +    L GL  ++ LD   +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHS 406

Query: 555 KLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNY-FP 613
            L              +  +L  L++++      F   F   S L+ LK+A N F   F 
Sbjct: 407 NLKQMSEFSVFL----SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 614 KELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQI 673
            ++   L  L  +DLS  QL+ +    +  L  L+ LN+++NN  ++    +   + LQ+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 674 INLSFNRLEKLPERLFNTFL 693
           ++ S N +    ++    F 
Sbjct: 523 LDYSLNHIMTSKKQELQHFP 542

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  167 bits (426), Expect = 2e-44
 Identities = 81/412 (19%), Positives = 150/412 (36%), Gaps = 40/412 (9%)

Query: 159 FSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLV 218
                +    LD S N +  +    F   R  L +L L +N    ++          GL 
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR--LHKLTLRNNFDSLNVMKTC----IQGLA 225

Query: 219 NLRILDLSDNQIK---AIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRA------LR 269
            L +  L   + +    +E+      + L  L ++  R   +     +          + 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 270 ILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKL 329
             S+    I  +K  S+      + + L   +           L +   L    N+    
Sbjct: 286 SFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKSLKR---LTFTSNKGGNA 340

Query: 330 NSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNF 389
            S          L  +  L+L  N L+                       LK LDL+ N 
Sbjct: 341 FS-------EVDLPSLEFLDLSRNGLSFKGC---------CSQSDFGTTSLKYLDLSFNG 384

Query: 390 LINLESTGLEDT-LDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNV 446
           +I + S  L    L++L+ + + +  +S  ++   L  L  LD+SH + +      F  +
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 447 PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
            +L  L ++ N+   +     F  L+ L  LDL+   L+ +    F+ L +L+ L ++HN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

Query: 507 HLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP-SMKRLDLSFNKLT 557
           +   +    +K L +L  LD S N+I+  +   L   P S+  L+L+ N   
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  157 bits (399), Expect = 8e-41
 Identities = 75/317 (23%), Positives = 127/317 (40%), Gaps = 25/317 (7%)

Query: 397 GLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
            L  +  NL++  N +  L S +  ++  L  LDLS   ++ +E  A+ ++  L  L L+
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE-M 514
            N  + SL +G F  L  L+ L    T L S+  +    L  LK L +AHN +       
Sbjct: 85  GN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 515 MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK----RLDLSFNKLTTFKGDYFNTKSKP 570
            F NL NL +LDLS+N I ++    L  L  M      LDLS N +   +   F      
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE---- 199

Query: 571 NTSSLEELNLNNNELTY-LFPSSFTIHSKLKTLKLAFNKF---NYFPKELILGLSYLQEI 626
               L +L L NN  +  +  +     + L+  +L   +F       K     L  L  +
Sbjct: 200 --IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 627 DLSNNQLKTIDDYD------YGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNR 680
            +   +L  +D Y       +  L  +   +L +  I+ + +  F  +   Q + L   +
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315

Query: 681 LEKLPERLFNTFLYTNY 697
             + P     +     +
Sbjct: 316 FGQFPTLKLKSLKRLTF 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  230 bits (588), Expect = 6e-68
 Identities = 74/310 (23%), Positives = 134/310 (43%), Gaps = 8/310 (2%)

Query: 381 KSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELE 439
           +++  +    + +   G+      L++  N+I TL+     ++  L +L+L+ N +  +E
Sbjct: 14  RAVLCHRKRFVAV-PEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72

Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK 499
           P AF N+  L  L L  N  L  +P+G F  L  L  LD++   +  +  Y F +L NLK
Sbjct: 73  PGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131

Query: 500 YLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTF 559
            L +  N L  I    F  L +L  L L   N+ ++   +L  L  +  L L    +   
Sbjct: 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 560 KGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILG 619
           +   F          L+ L +++         +      L +L +        P   +  
Sbjct: 192 RDYSFK-----RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246

Query: 620 LSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
           L YL+ ++LS N + TI+      L RL+++ L    +  +    F   + L+++N+S N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306

Query: 680 RLEKLPERLF 689
           +L  L E +F
Sbjct: 307 QLTTLEESVF 316

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  224 bits (574), Expect = 6e-66
 Identities = 93/362 (25%), Positives = 151/362 (41%), Gaps = 48/362 (13%)

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
              RF ++P      P   R+L +  NRI TL  D F S   LE + L  N ++ +E GA
Sbjct: 19  HRKRFVAVPE---GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA 75

Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHIT 369
           FN L  +  L L  NRL  +    F G     L+ +  L++  N++  L    FQ  +  
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTG-----LSNLTKLDISENKIVILLDYMFQDLY-- 128

Query: 370 IFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKL 428
                     LKSL++                       DN +  +S  A      L +L
Sbjct: 129 ---------NLKSLEVG----------------------DNDLVYISHRAFSGLNSLEQL 157

Query: 429 DLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
            L   NL  +   A +++  L+ L L    +++++    F  L +L+VL+++        
Sbjct: 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 489 QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR 548
                  LNL  L + H +LT +P +  ++L+ L +L+LS N I  +    L+ L  ++ 
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276

Query: 549 LDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNK 608
           + L   +L   +   F        + L  LN++ N+LT L  S F     L+TL L  N 
Sbjct: 277 IQLVGGQLAVVEPYAFR-----GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331

Query: 609 FN 610
             
Sbjct: 332 LA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  223 bits (569), Expect = 3e-65
 Identities = 84/371 (22%), Positives = 146/371 (39%), Gaps = 47/371 (12%)

Query: 163 DIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI 222
               R +         + + + +      + L L  N    +LN      EF    +L  
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGIPT----ETRLLDLGKNRIK-TLNQ----DEFASFPHLEE 60

Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
           L+L++N + A+E G      NL  L +  NR   IP     G   L  L ++ N+I  L 
Sbjct: 61  LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120

Query: 283 ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL 342
              F     L+ + +  N L  I   AF+GL  +  L L    L  + +      A + L
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-----EALSHL 175

Query: 343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTL 402
             + +L L +  +N +   +F+  +           +LK L+++                
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLY-----------RLKVLEISHW-------------- 210

Query: 403 DNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSS 462
                    + T++ + L    LT L ++H NL  +   A  ++  L  LNLS N  +S+
Sbjct: 211 -------PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PIST 262

Query: 463 LPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNL 522
           +       L +L+ + L    L  +  Y F  L  L+ L ++ N LT + E +F ++ NL
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322

Query: 523 TYLDLSNNNIV 533
             L L +N + 
Sbjct: 323 ETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  211 bits (538), Expect = 7e-61
 Identities = 79/305 (25%), Positives = 127/305 (41%), Gaps = 9/305 (2%)

Query: 380 LKSLDLNGNFLINLESTGLEDT--LDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLK 436
            + LDL  N +  L          L+ L + +N ++ +   A  N   L  L L  N LK
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
            +    FT +  L  L++S N  +  L    F  L  L+ L++    L  I    F  L 
Sbjct: 94  LIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
           +L+ L L   +LT IP     +L  L  L L + NI  +R  S   L  +K L++S    
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 557 TTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKEL 616
                            +L  L++ +  LT +   +      L+ L L++N  +     +
Sbjct: 213 LDTMTPNCL-----YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267

Query: 617 ILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINL 676
           +  L  LQEI L   QL  ++ Y +  L  LR LN++ N +  + E+ F +   L+ + L
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327

Query: 677 SFNRL 681
             N L
Sbjct: 328 DSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  165 bits (420), Expect = 1e-44
 Identities = 53/235 (22%), Positives = 100/235 (42%), Gaps = 8/235 (3%)

Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
                 ++P G      +  +LDL    +K++ Q +F    +L+ L L  N ++ +    
Sbjct: 19  HRKRFVAVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA 75

Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSL 575
           F NL NL  L L +N +  + +G   GL ++ +LD+S NK+       F      +  +L
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ-----DLYNL 130

Query: 576 EELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKT 635
           + L + +N+L Y+   +F+  + L+ L L        P E +  L  L  + L +  +  
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190

Query: 636 IDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
           I DY +  L RL+ L +++                L  ++++   L  +P     
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  138 bits (350), Expect = 4e-35
 Identities = 36/215 (16%), Positives = 77/215 (35%), Gaps = 32/215 (14%)

Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
            +        ++P+         + L L  N +  + +  F +  +L  L+L+ N +  +
Sbjct: 15  AVLCHRKRFVAVPE---GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTI 595
             G+   L +++ L L  N+L       F        S+L +L+++ N++  L    F  
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLKLIPLGVFT-----GLSNLTKLDISENKIVILLDYMFQ- 125

Query: 596 HSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
                                   L  L+ +++ +N L  I    +  L  L +L L   
Sbjct: 126 -----------------------DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162

Query: 656 NIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
           N+ +I      +   L ++ L    +  + +  F 
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  213 bits (545), Expect = 8e-63
 Identities = 81/376 (21%), Positives = 147/376 (39%), Gaps = 32/376 (8%)

Query: 182 KLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGC 241
           +      +   +    D         ++   E   L N +I+   ++ ++ +   +L   
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 68

Query: 242 DNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNR 301
             +  L ++  +   I + +      ++ L M +N I  L    F +   L  ++L  N 
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128

Query: 302 LTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSD 361
           L+++  G F+   K+  L++  N L ++  DTFQ         +  L L  NRL  ++  
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-----ATTSLQNLQLSSNRLTHVD-- 181

Query: 362 TFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALN 421
                             L   +++ N L  L        ++ L+   N I  +      
Sbjct: 182 ------------LSLIPSLFHANVSYNLLSTLAI---PIAVEELDASHNSINVVRGPVNV 226

Query: 422 YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA 481
              LT L L HNNL +       N P L+ ++LS N  L  +    F  +++LE L ++ 
Sbjct: 227 E--LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISN 281

Query: 482 TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541
             L ++  Y    +  LK L L+HNHL  +          L  L L +N+IV L++ +  
Sbjct: 282 NRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLST-- 337

Query: 542 GLPSMKRLDLSFNKLT 557
              ++K L LS N   
Sbjct: 338 -HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  191 bits (486), Expect = 2e-54
 Identities = 80/367 (21%), Positives = 145/367 (39%), Gaps = 38/367 (10%)

Query: 319 LNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQ 378
                  ++    D + G     L    I+    + + KL +                F+
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS-----------FR 69

Query: 379 KLKSLDLNGNFLINLESTGLED--TLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNL 435
           +++ L+LN   +  +++       T+  L +  N I  L      N  LLT L L  N+L
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 436 KELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDEL 495
             L    F N P L  L++S N +L  +    F     L+ L L++  L  +       +
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLI 185

Query: 496 LNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
            +L +  +++N L+ +        + +  LD S+N+I  +R      L     L L  N 
Sbjct: 186 PSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVEL---TILKLQHNN 237

Query: 556 LTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615
           LT       +T    N   L E++L+ NEL  +    F    +L+ L ++ N+       
Sbjct: 238 LT-------DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-L 289

Query: 616 LILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIIN 675
               +  L+ +DLS+N L  ++  +     RL  L L++N+I  +  +       L+ + 
Sbjct: 290 YGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLKLSTHHT---LKNLT 345

Query: 676 LSFNRLE 682
           LS N  +
Sbjct: 346 LSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  184 bits (468), Expect = 8e-52
 Identities = 57/293 (19%), Positives = 109/293 (37%), Gaps = 25/293 (8%)

Query: 404 NLNVRDNQITTLSSSA------LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
           +    D  I   +         +       +   ++ +++L      +   +  LNL+  
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79

Query: 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK 517
             +  +    F     ++ L +    ++ +P + F  +  L  L L  N L+ +P  +F 
Sbjct: 80  -QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138

Query: 518 NLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEE 577
           N   LT L +SNNN+  +   +     S++ L LS N+LT                SL  
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI--------PSLFH 190

Query: 578 LNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTID 637
            N++ N L+     +  I   ++ L  + N  N     +      L  + L +N L    
Sbjct: 191 ANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDTA 242

Query: 638 DYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
                  P L +++L+ N ++ I    F    +L+ + +S NRL  L      
Sbjct: 243 WL--LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP 293

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  183 bits (467), Expect = 1e-51
 Identities = 75/422 (17%), Positives = 146/422 (34%), Gaps = 68/422 (16%)

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
               +  I S +L        + +             ++    + +  + + +  +    
Sbjct: 6   RQPEYKCIDS-NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 64

Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHIT 369
            +   ++ +LNL   ++ ++++      AF     I  L +G+N +  L    FQ     
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDT-----YAFAYAHTIQKLYMGFNAIRYLPPHVFQNV--- 116

Query: 370 IFSFFQDFQKLKSLDLNGNFLINLESTGLED--TLDNLNVRDNQITTLSSSAL-NYKLLT 426
                     L  L L  N L +L      +   L  L++ +N +  +          L 
Sbjct: 117 --------PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168

Query: 427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKS 486
            L LS N L  ++ +   +   L H N+S N  LS+L          +E LD +   +  
Sbjct: 169 NLQLSSNRLTHVDLSLIPS---LFHANVSYN-LLSTLA-----IPIAVEELDASHNSINV 219

Query: 487 IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
           +        + L  L L HN+LT+       N   L  +DLS N +  +       +  +
Sbjct: 220 VRGPVN---VELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAF 606
           +RL +S N+L                 +L+ L+L++N L ++  +               
Sbjct: 275 ERLYISNNRLVALNLYGQ------PIPTLKVLDLSHNHLLHVERNQP------------- 315

Query: 607 NKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFF 666
                           L+ + L +N + T+          L+ L L++N+ D  S    F
Sbjct: 316 ------------QFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCNSLRALF 360

Query: 667 NS 668
            +
Sbjct: 361 RN 362

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  167 bits (425), Expect = 6e-46
 Identities = 60/287 (20%), Positives = 116/287 (40%), Gaps = 19/287 (6%)

Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
           N+  R  +   + S+     +   + +               +     +    +  +  L
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKL 60

Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
           P    D  +++E+L+L    ++ I  Y F     ++ L +  N +  +P  +F+N+  LT
Sbjct: 61  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120

Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
            L L  N++ +L  G  +  P +  L +S N L   + D F       T+SL+ L L++N
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-----ATTSLQNLQLSSN 175

Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGY 643
            LT++  S       L    +++N  +            ++E+D S+N +  +       
Sbjct: 176 RLTHVDLSLIP---SLFHANVSYNLLSTLAI-----PIAVEELDASHNSINVVRG---PV 224

Query: 644 LPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
              L  L L +NN+   +     N   L  ++LS+N LEK+    F 
Sbjct: 225 NVELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFV 269

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (276), Expect = 4e-26
 Identities = 51/261 (19%), Positives = 87/261 (33%), Gaps = 40/261 (15%)

Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
           + L  S N L  +   L      +L    ++ NL           S     + +  LD S
Sbjct: 168 QNLQLSSNRLTHVDLSLIP----SLFHANVSYNLL----------STLAIPIAVEELDAS 213

Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSF 286
            N I  +   +      L  L++ HN  T      L     L  + ++YN +  +    F
Sbjct: 214 HNSINVVRGPVNV---ELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPF 268

Query: 287 LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIH 346
           +  + LER+ +  NRL  +       +  + +L+L +N L  +  +  Q        ++ 
Sbjct: 269 VKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQ------FDRLE 321

Query: 347 ILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLN 406
            L L +N +  L   T                 LK+L L+ N         L   +    
Sbjct: 322 NLYLDHNSIVTLKLSTHHT--------------LKNLTLSHNDWDCNSLRALFRNVARPA 367

Query: 407 VRDNQITTLSSSALNYKLLTK 427
           V D          L + L  K
Sbjct: 368 VDDADQHCKIDYQLEHGLCCK 388

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  222 bits (568), Expect = 3e-62
 Identities = 91/547 (16%), Positives = 190/547 (34%), Gaps = 63/547 (11%)

Query: 157 QIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHG 216
           ++F   ++     +   + +R    K+F  +   L    L  +    +        +   
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
            +    +    N+I  I + I +    L  +   ++ FT                +  Y 
Sbjct: 424 SLKDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYA 477

Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQ- 335
           +    +  S+ + + L  + L      T        L ++  LN+  NR           
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

Query: 336 ---GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLIN 392
                  +   KI I  +GYN L                +  Q   KL  LD   N + +
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNL----------EEFPASASLQKMVKLGLLDCVHNKVRH 587

Query: 393 LESTGLEDTLDNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKEL-EPTAFTNVPTLL 450
           LE+ G    L +L +  NQI  +      +   +  L  SHN LK +       +V  + 
Sbjct: 588 LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647

Query: 451 HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
            ++ S N  + S        +   +                    +N   + L++N + +
Sbjct: 648 SVDFSYN-KIGSEGRNISCSMDDYK-------------------GINASTVTLSYNEIQK 687

Query: 511 IPEMMFKNLLNLTYLDLSNNNIVNL-------RVGSLYGLPSMKRLDLSFNKLTTFKGDY 563
            P  +F     ++ + LSNN + ++       + G+      +  +DL FNKLT+   D+
Sbjct: 688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF 747

Query: 564 FNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKF---NYFPKEL---I 617
             T        L  ++++ N  +   P+     S+LK   +   +    N   ++    I
Sbjct: 748 RAT----TLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802

Query: 618 LGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLS 677
                L ++ + +N ++ +D+      P+L  L++ +N   +I  T      +  +  L 
Sbjct: 803 TTCPSLIQLQIGSNDIRKVDE---KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859

Query: 678 FNRLEKL 684
           +++ + +
Sbjct: 860 YDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  215 bits (548), Expect = 2e-59
 Identities = 90/540 (16%), Positives = 173/540 (32%), Gaps = 77/540 (14%)

Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMD 250
           +  L LA       +           L  L++L    +                      
Sbjct: 325 VTGLSLAGFGAKGRVPD-----AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 251 HNRFT-SIPSVSLNGPRALRILSMAYNR------IGTLKADSFLSQRWLERIILRGNRLT 303
            +R       + L+  + L +  +  +       +  +K DS +S +  + I    NR+T
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRIT 438

Query: 304 TIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTF 363
            I   A   L K+ I+    +     N                  N  Y +  +    ++
Sbjct: 439 FISK-AIQRLTKLQIIYFANSPFTYDNIAVDW----------EDANSDYAKQYENEELSW 487

Query: 364 QGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED--TLDNLNVRDNQITTLSSSALN 421
                         + L  ++L     +      L D   L +LN+  N+  + +    +
Sbjct: 488 SN-----------LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536

Query: 422 YKL----------LTKLDLSHNNLKEL-EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470
           +            +    + +NNL+E     +   +  L  L+   N  +  L    F  
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLEA--FGT 593

Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM-FKNLLNLTYLDLSN 529
             KL  L L    ++ IP+        ++ L  +HN L  IP +   K++  +  +D S 
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653

Query: 530 NNIVNLRVGSLYGLP-----SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNE 584
           N I +        +      +   + LS+N++  F  + F        S +  + L+NN 
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA-----TGSPISTIILSNNL 708

Query: 585 LTYL-------FPSSFTIHSKLKTLKLAFNKFNYFPKELILG-LSYLQEIDLSNNQLKTI 636
           +T +          ++     L T+ L FNK      +     L YL  +D+S N   + 
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768

Query: 637 DDYDYGYLPRLRKLNL------NNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
                    +L+   +        N I     T       L  + +  N + K+ E+L  
Sbjct: 769 PT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP 827

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  201 bits (512), Expect = 1e-54
 Identities = 73/476 (15%), Positives = 165/476 (34%), Gaps = 58/476 (12%)

Query: 249 MDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGG 308
            + + +   P V L+    +  LS+A         D+      L+ +    +  T     
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365

Query: 309 AFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHI 368
             +      +     +R+       F     +   ++++ +L  + +N+           
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMF----LDYDQRLNLSDLLQDAINRNPE-------- 413

Query: 369 TIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN------LNVRDNQITTLSSSALNY 422
                      LK   +     +    T +   +        +   ++  T  + +    
Sbjct: 414 MKPIKKDSRISLKDTQIG---NLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD-- 468

Query: 423 KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAAT 482
                 +  +    E E  +++N+  L  + L    +++ LP      L +L+ L++A  
Sbjct: 469 --WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACN 525

Query: 483 GLKSIPQY---------QFDELLNLKYLCLAHNHLTEIP-EMMFKNLLNLTYLDLSNNNI 532
              S  Q            D    ++   + +N+L E P     + ++ L  LD  +N +
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585

Query: 533 VNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSS 592
            +L   +      +  L L +N++     D+        T  +E L  ++N+L Y+ P+ 
Sbjct: 586 RHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCA-----FTDQVEGLGFSHNKLKYI-PNI 637

Query: 593 FTIHS--KLKTLKLAFNKFNYFPKELILGLSY-----LQEIDLSNNQLKTIDDYDYGYLP 645
           F   S   + ++  ++NK     + +   +          + LS N+++      +    
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 646 RLRKLNLNNNNIDAISE-------TCFFNSSQLQIINLSFNRLEKLPERLFNTFLY 694
            +  + L+NN + +I E         + N+  L  I+L FN+L  L +    T L 
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  175 bits (445), Expect = 6e-46
 Identities = 64/388 (16%), Positives = 129/388 (33%), Gaps = 47/388 (12%)

Query: 191 LQELRLADNLFGDSLNPIFS----TSEFHGLVNLRILDLSDNQIKAI-EEGILKGCDNLL 245
           LQ L +A N    +            +      ++I  +  N ++       L+    L 
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576

Query: 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
            L   HN+   + +        L  L + YN+I  +  D       +E +    N+L  I
Sbjct: 577 LLDCVHNKVRHLEA--FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634

Query: 306 -EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQ 364
                   +  +  ++  YN++     +               + L YN + K       
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF------ 688

Query: 365 GTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKL 424
                    F     + ++ L+ N + ++         ++L  +D               
Sbjct: 689 -----PTELFATGSPISTIILSNNLMTSIPE-------NSLKPKDGNYKNTYL------- 729

Query: 425 LTKLDLSHNNLKEL-EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATG 483
           LT +DL  N L  L +    T +P L ++++S N   SS P    +   +L+   +    
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLN-SSQLKAFGIRHQR 787

Query: 484 -------LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536
                  L+  P        +L  L +  N + ++ E +   L     LD+++N  +++ 
Sbjct: 788 DAEGNRILRQWPT-GITTCPSLIQLQIGSNDIRKVDEKLTPQL---YILDIADNPNISID 843

Query: 537 VGSLYGLPSMKRLDLSFNKLTTFKGDYF 564
           V S+          L ++K    +G   
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  111 bits (280), Expect = 1e-25
 Identities = 43/296 (14%), Positives = 98/296 (33%), Gaps = 32/296 (10%)

Query: 154 LPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSE 213
           +P    + +D  +  L FS N L+ + +   +     +  +  + N  G     I  + +
Sbjct: 610 IPEDFCAFTDQ-VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
            +  +N   + LS N+I+     +      +  + + +N  TSIP  SL           
Sbjct: 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN----- 723

Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTI-EGGAFNGLAKIHILNLGYNRLNKLNSD 332
                             L  I LR N+LT++ +      L  +  +++ YN  +   + 
Sbjct: 724 ----YKNTYL--------LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ 771

Query: 333 TFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLIN 392
                        H  +   NR+ +              +       L  L +  N +  
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILR-----------QWPTGITTCPSLIQLQIGSNDIRK 820

Query: 393 LESTGLEDTLDNLNVRDNQITTLSSSALNYKL-LTKLDLSHNNLKELEPTAFTNVP 447
           ++       L  L++ DN   ++  +++   +      L ++  +++       + 
Sbjct: 821 VDEKLTPQ-LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.0 bits (166), Expect = 7e-12
 Identities = 27/193 (13%), Positives = 57/193 (29%), Gaps = 24/193 (12%)

Query: 505 HNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYF 564
            +   + P +   N   +T L L+          ++  L  +K L    +  T     + 
Sbjct: 308 LDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFG 367

Query: 565 NTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ 624
           + +  P+ S        +    +          +L    L  +  N  P+  +  +    
Sbjct: 368 DEELTPDMS----EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE--MKPIKKDS 421

Query: 625 EIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKL 684
            I L + Q+                     N I  IS+      ++LQII  + +     
Sbjct: 422 RISLKDTQI-----------------GNLTNRITFISKA-IQRLTKLQIIYFANSPFTYD 463

Query: 685 PERLFNTFLYTNY 697
              +      ++Y
Sbjct: 464 NIAVDWEDANSDY 476

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.6 bits (165), Expect = 8e-12
 Identities = 26/184 (14%), Positives = 50/184 (27%), Gaps = 42/184 (22%)

Query: 167 RRLDFSGNALRRLSDKLFSPHRDT------LQELRLADNLFGDSLNPIFSTSEFHGLVNL 220
             +  S N +  + +    P          L  + L  N     L  +        L  L
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN----KLTSLSDDFRATTLPYL 755

Query: 221 RILDLSDNQIKAIEEGI-----------------------------LKGCDNLLELRMDH 251
             +D+S N   +                                  +  C +L++L++  
Sbjct: 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815

Query: 252 NRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
           N    +          L IL +A N   ++   S          +L  ++   I G    
Sbjct: 816 NDIRKVDEKLTPQ---LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDAL 872

Query: 312 GLAK 315
           G+ +
Sbjct: 873 GIER 876

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  207 bits (529), Expect = 7e-60
 Identities = 100/426 (23%), Positives = 161/426 (37%), Gaps = 52/426 (12%)

Query: 163 DIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNL 220
           ++P  +  +D S N++  L++  FS     LQ L++     G  +      + F GL +L
Sbjct: 27  ELPAHVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRN----NTFRGLSSL 81

Query: 221 RILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGT 280
            IL L  NQ   +E G   G  NL  L +                               
Sbjct: 82  IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA----------------------V 119

Query: 281 LKADSFLSQRWLERIILRGNRLTTIE-GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
           L  + F     LE ++LR N +  I+    F  + + H+L+L +N++  +  +       
Sbjct: 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179

Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE 399
                   L L    L  +N                    + +LDL+GN      +    
Sbjct: 180 KHFTL---LRLSSITLQDMNEYWLGWEKCGNP---FKNTSITTLDLSGNGFKESMAKRFF 233

Query: 400 DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPT--LLHLNLSRN 457
           D +          T + S  L+          H N K+ +   F  +    +   +LS++
Sbjct: 234 DAIAG--------TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285

Query: 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK 517
             + +L    F     LE L LA   +  I    F  L +L  L L+ N L  I   MF+
Sbjct: 286 -KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344

Query: 518 NLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEE 577
           NL  L  LDLS N+I  L   S  GLP++K L L  N+L +     F+       +SL++
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD-----RLTSLQK 399

Query: 578 LNLNNN 583
           + L+ N
Sbjct: 400 IWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  193 bits (493), Expect = 8e-55
 Identities = 87/401 (21%), Positives = 146/401 (36%), Gaps = 56/401 (13%)

Query: 291 WLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNL 350
            +  + L  N +  +   +F+ L  +  L +             +   F GL+ + IL L
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP----GLVIRNNTFRGLSSLIILKL 86

Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED-------TLD 403
            YN+  +L +  F G              L+ L L      NL+   L         +L+
Sbjct: 87  DYNQFLQLETGAFNG-----------LANLEVLTLTQC---NLDGAVLSGNFFKPLTSLE 132

Query: 404 NLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTN--VPTLLHLNLSRN-- 457
            L +RDN I  +  ++    +     LDL+ N +K +      N        L LS    
Sbjct: 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL 192

Query: 458 -----AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYL----------- 501
                  L     G       +  LDL+  G K     +F + +    +           
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 502 --CLAHNHLTEIPEMMFKNLL--NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLT 557
                H +  +     FK L    +   DLS + I  L          +++L L+ N++ 
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312

Query: 558 TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI 617
               + F        + L +LNL+ N L  +    F    KL+ L L++N       +  
Sbjct: 313 KIDDNAFW-----GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367

Query: 618 LGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
           LGL  L+E+ L  NQLK++ D  +  L  L+K+ L+ N  D
Sbjct: 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  174 bits (442), Expect = 1e-47
 Identities = 68/315 (21%), Positives = 117/315 (37%), Gaps = 26/315 (8%)

Query: 401 TLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLK-ELEPTAFTNVPTLLHLNLSRNA 458
            ++ +++  N I  L+ ++    + L  L +        +    F  + +L+ L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN- 89

Query: 459 HLSSLPVGGFDPLKKLEVLDLAATGLKS--IPQYQFDELLNLKYLCLAHNHLTEI-PEMM 515
               L  G F+ L  LEVL L    L    +    F  L +L+ L L  N++ +I P   
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK--RLDLSFNKLTTFKGDYFNTKSKPN-- 571
           F N+     LDL+ N + ++    L          L LS   L      +   +   N  
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 572 -TSSLEELNLNNNELTYLFPSSF-------------TIHSKLKTLKLAFNKFNYFPKELI 617
             +S+  L+L+ N         F               +S           F        
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 618 LGL--SYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIIN 675
            GL  S ++  DLS +++  +    + +   L +L L  N I+ I +  F+  + L  +N
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329

Query: 676 LSFNRLEKLPERLFN 690
           LS N L  +  R+F 
Sbjct: 330 LSQNFLGSIDSRMFE 344

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  146 bits (369), Expect = 7e-38
 Identities = 57/286 (19%), Positives = 105/286 (36%), Gaps = 37/286 (12%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
           +  +DLS N++ EL  T+F+ +  L  L + +      +    F  L  L +L L     
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTE--IPEMMFKNLLNLTYLDLSNNNIVNLR-VGSLY 541
             +    F+ L NL+ L L   +L    +    FK L +L  L L +NNI  ++      
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 542 GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKT 601
            +     LDL+FNK+ +   +        +      L L++  L  +             
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKH---FTLLRLSSITLQDMNE----------- 197

Query: 602 LKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD---YDYGYLPRLRKLNLNN---- 654
                    +         + +  +DLS N  K       +D     +++ L L+N    
Sbjct: 198 -----YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 655 ------NNIDAISETCFFN--SSQLQIINLSFNRLEKLPERLFNTF 692
                  N        F    +S ++  +LS +++  L + +F+ F
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (250), Expect = 2e-22
 Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 6/164 (3%)

Query: 162 SDIPIRRLDFSGNALRRLSDKLFSPHRDT-LQELRLADNLFGDSLNPIFSTSEFHGLVNL 220
           S+       F     +   +  F     + ++   L+ +     +  +  +  F    +L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS----KIFALLKSV-FSHFTDL 301

Query: 221 RILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGT 280
             L L+ N+I  I++    G  +LL+L +  N   SI S        L +L ++YN I  
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361

Query: 281 LKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
           L   SFL    L+ + L  N+L ++  G F+ L  +  + L  N
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN-YFPKELILGLSYLQEIDLSNN 631
           + +  ++L+ N +  L  +SF+    L+ LK+               GLS L  + L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 632 QLKTIDDYDYGYLPRLRKLNLNNNNIDA--ISETCFFNSSQLQIINLSFNRLEKL-PERL 688
           Q   ++   +  L  L  L L   N+D   +S   F   + L+++ L  N ++K+ P   
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 689 FN 690
           F 
Sbjct: 150 FL 151

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
            +L+ S N L  +  ++F  + D L+ L L+ N              F GL NL+ L L 
Sbjct: 326 LKLNLSQNFLGSIDSRMFE-NLDKLEVLDLSYNHIR-----ALGDQSFLGLPNLKELALD 379

Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRF 254
            NQ+K++ +GI     +L ++ +  N +
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  208 bits (530), Expect = 1e-58
 Identities = 81/376 (21%), Positives = 147/376 (39%), Gaps = 32/376 (8%)

Query: 182 KLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGC 241
           +      +   +    D         ++   E   L N +I+   ++ ++ +   +L   
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 74

Query: 242 DNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNR 301
             +  L ++  +   I + +      ++ L M +N I  L    F +   L  ++L  N 
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 302 LTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSD 361
           L+++  G F+   K+  L++  N L ++  DTFQ         +  L L  NRL  ++  
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-----ATTSLQNLQLSSNRLTHVD-- 187

Query: 362 TFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALN 421
                             L   +++ N L  L        ++ L+   N I  +      
Sbjct: 188 ------------LSLIPSLFHANVSYNLLSTLAI---PIAVEELDASHNSINVVRGPVNV 232

Query: 422 YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA 481
              LT L L HNNL +       N P L+ ++LS N  L  +    F  +++LE L ++ 
Sbjct: 233 E--LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISN 287

Query: 482 TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541
             L ++  Y    +  LK L L+HNHL  +          L  L L +N+IV L++ +  
Sbjct: 288 NRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLST-- 343

Query: 542 GLPSMKRLDLSFNKLT 557
              ++K L LS N   
Sbjct: 344 -HHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  190 bits (484), Expect = 2e-52
 Identities = 82/396 (20%), Positives = 148/396 (37%), Gaps = 55/396 (13%)

Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
            R N                +        ++    D + G     L    I+    + + 
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
           KL +                F++++ L+LN                        QI  + 
Sbjct: 65  KLPAALLDS-----------FRQVELLNLND----------------------LQIEEID 91

Query: 417 SSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLE 475
           + A      + KL +  N ++ L P  F NVP L  L L RN  LSSLP G F    KL 
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLT 150

Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
            L ++   L+ I    F    +L+ L L+ N LT +       + +L + ++S N +   
Sbjct: 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL--- 204

Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTI 595
              +L    +++ LD S N +   +G             L  L L +N LT    +    
Sbjct: 205 --STLAIPIAVEELDASHNSINVVRGPVN--------VELTILKLQHNNLTDT--AWLLN 252

Query: 596 HSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
           +  L  + L++N+         + +  L+ + +SNN+L  ++ Y    +P L+ L+L++N
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP-IPTLKVLDLSHN 311

Query: 656 NIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT 691
           ++  +         +L+ + L  N +  L     +T
Sbjct: 312 HLLHVERN-QPQFDRLENLYLDHNSIVTLKLSTHHT 346

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  184 bits (468), Expect = 4e-50
 Identities = 91/535 (17%), Positives = 181/535 (33%), Gaps = 66/535 (12%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
            + + F  + +R+L   L                                    + +L+L
Sbjct: 53  QKIVTFKNSTMRKLPAALLD------------------------------SFRQVELLNL 82

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
           +D QI+ I+         + +L M  N    +P         L +L +  N + +L    
Sbjct: 83  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142

Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
           F +   L  + +  N L  IE   F     +  L L  NRL  ++         + +  +
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--------LSLIPSL 194

Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNL 405
              N+ YN L+ L                     ++ LD + N +  +      + L  L
Sbjct: 195 FHANVSYNLLSTLAIPIA----------------VEELDASHNSINVVRGPVNVE-LTIL 237

Query: 406 NVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV 465
            ++ N +T  +    NY  L ++DLS+N L+++    F  +  L  L +S N  L +L  
Sbjct: 238 KLQHNNLTDTAWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALN- 294

Query: 466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525
               P+  L+VLDL+   L  + + Q  +   L+ L L HN +  +          L  L
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLK---LSTHHTLKNL 350

Query: 526 DLSNNNIVNLRVGSLY---GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN 582
            LS+N+     + +L+     P++   D         +      +S           +  
Sbjct: 351 TLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIAL 410

Query: 583 NELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL-KTIDDYDY 641
             +      +    S   T+    +  +Y  ++  + L   ++++   N+L   +     
Sbjct: 411 TSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTN 470

Query: 642 GYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTN 696
             + + + L   +  ID            L   + + N++    +      L   
Sbjct: 471 EQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRET 525

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  126 bits (317), Expect = 2e-30
 Identities = 40/216 (18%), Positives = 79/216 (36%), Gaps = 13/216 (6%)

Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK-----NLLNLTYLDLSNNNIVNLRVG 538
               P+Y+  +            H+    + ++       L N   +   N+ +  L   
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 69

Query: 539 SLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSK 598
            L     ++ L+L+  ++       F         ++++L +  N + YL P  F     
Sbjct: 70  LLDSFRQVELLNLNDLQIEEIDTYAFA-----YAHTIQKLYMGFNAIRYLPPHVFQNVPL 124

Query: 599 LKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
           L  L L  N  +  P+ +      L  + +SNN L+ I+D  +     L+ L L++N + 
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

Query: 659 AISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLY 694
            +  +       L   N+S+N L  L   +    L 
Sbjct: 185 HVDLSLI---PSLFHANVSYNLLSTLAIPIAVEELD 217

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  196 bits (501), Expect = 3e-54
 Identities = 69/543 (12%), Positives = 171/543 (31%), Gaps = 47/543 (8%)

Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
             L    +  +                      +                  +L    ++
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167

Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSF 286
            +  +   +   +      ++    N  T +   ++     LR   M  +          
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICEA 226

Query: 287 LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIH 346
                 E       +    E   ++ L  +  + +                    L ++ 
Sbjct: 227 WENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-----FLKALPEMQ 276

Query: 347 ILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL---ESTGLEDTLD 403
           ++N+  NR                 +     +K++ + +  N L       S      L 
Sbjct: 277 LINVACNRGISGEQLKDDWQ---ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG 333

Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
            L    NQ+     +  +   L  L+L++N + E+          + +L+ + N  L  +
Sbjct: 334 MLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYI 392

Query: 464 P-VGGFDPLKKLEVLDLAATGLKSIPQYQFDE-------LLNLKYLCLAHNHLTEIPEMM 515
           P +     +  +  +D +   + S+    FD         +N+  + L++N +++ P+ +
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 516 FKNLLNLTYLDLSNNNIVNLRVG-------SLYGLPSMKRLDLSFNKLTTFKGDYFNTKS 568
           F     L+ ++L  N +  +          +      +  +DL FNKLT    D+  T  
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT-- 510

Query: 569 KPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNK---FNYFPKEL---ILGLSY 622
                 L  ++L+ N  +   P+     S LK   +   +    N   +E    I     
Sbjct: 511 --TLPYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682
           L ++ + +N ++ +++      P +  L++ +N   +I  +      +  +  L +++ +
Sbjct: 568 LTQLQIGSNDIRKVNE---KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

Query: 683 KLP 685
            + 
Sbjct: 625 DIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  192 bits (490), Expect = 7e-53
 Identities = 94/533 (17%), Positives = 174/533 (32%), Gaps = 61/533 (11%)

Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEG-ILKGCDNLLELRM 249
           +  L L        +           L  L +L L  +  K  E     KG    +    
Sbjct: 83  VTGLSLEGFGASGRVPD-----AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRI------GTLKADSFLSQRWLERIILRGNRLT 303
                       ++         +  + I       ++K  S ++ +   +I    N +T
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK-DTQIGQLSNNIT 196

Query: 304 TIEGGAFNGLAKIHILNLGYNRLNKLNSDTF-QGGAFNGLAKIHILNLGYNRLNKLNSDT 362
            +       L K+    +G +     N     +        +    +L ++ L  L    
Sbjct: 197 FVSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 363 FQGTHI--TIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL 420
                    + +F +   +++ +++  N  I+ E   L+D    L           + A 
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ--LKDDWQAL-----------ADAP 302

Query: 421 NYKLLTKLDLSHNNLKELE-PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
             + +  + + +NNLK     T+   +  L  L    N  L       F    KL  L+L
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKL-PAFGSEIKLASLNL 360

Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMF-KNLLNLTYLDLSNNNIVNLRVG 538
           A   +  IP         ++ L  AHN L  IP +   K++  ++ +D S N I ++   
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

Query: 539 SLYGLP-------SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYL--- 588
           +   L        ++  ++LS N+++ F  + F+       S L  +NL  N LT +   
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFS-----TGSPLSSINLMGNMLTEIPKN 475

Query: 589 ----FPSSFTIHSKLKTLKLAFNKFNYFPKELILG-LSYLQEIDLSNNQLKTIDDYDYGY 643
                  +F     L ++ L FNK      +     L YL  IDLS N            
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT-QPLN 534

Query: 644 LPRLRKLNLNN------NNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
              L+   + N      N               L  + +  N + K+ E++  
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP 587

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  170 bits (432), Expect = 5e-45
 Identities = 75/470 (15%), Positives = 161/470 (34%), Gaps = 48/470 (10%)

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
           + + + + P VSLN    +  LS+          D+      LE + L  +     E   
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHIT 369
                   I     +   +     +Q    +   +    +L  + +N            +
Sbjct: 125 GPKG----ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ------QKS 174

Query: 370 IFSFFQDFQKLKSLDLNGNFLINLESTGLEDT-LDNLNVRDNQITTLSSSALNYKLLTKL 428
           I    +   K   +    N +  +    +  T L    + ++     +      +     
Sbjct: 175 IKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENIC----EAWENE 230

Query: 429 DLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
           +  +    + E   + N+  L  + +    +L+ LP      L +++++++A     S  
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGE 289

Query: 489 QY--------QFDELLNLKYLCLAHNHLTEIP-EMMFKNLLNLTYLDLSNNNIVNLRVGS 539
           Q                ++ + + +N+L   P E   + +  L  L+   N +    + +
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-LPA 348

Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHS-- 597
                 +  L+L++N++T    ++        T  +E L+  +N+L Y+ P+ F   S  
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCG-----FTEQVENLSFAHNKLKYI-PNIFDAKSVS 402

Query: 598 KLKTLKLAFNKFNYFPK-------ELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKL 650
            +  +  ++N+                     +  I+LSNNQ+       +     L  +
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 651 NLNNNNIDAISE-------TCFFNSSQLQIINLSFNRLEKLPERLFNTFL 693
           NL  N +  I +         F N+  L  I+L FN+L KL +    T L
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  162 bits (412), Expect = 2e-42
 Identities = 84/543 (15%), Positives = 166/543 (30%), Gaps = 75/543 (13%)

Query: 154 LPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSE 213
           +  ++F    I     D     +R    K F  +        L  +              
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178

Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
               +    +    N I  + + +++    L +  M ++ F +      N   A    + 
Sbjct: 179 SRITLKDTQIGQLSNNITFVSKAVMR-LTKLRQFYMGNSPFVA-----ENICEAWENENS 232

Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDT 333
            Y +    +   + + + L  + +      T        L ++ ++N+  NR        
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292

Query: 334 FQGGAFNGLA---KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL 390
               A        KI I+ +GYN L              + +  Q  +KL  L+   N L
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNL----------KTFPVETSLQKMKKLGMLECLYNQL 342

Query: 391 ----------INLES--------TGLEDT-------LDNLNVRDNQITTLSSSALNYKL- 424
                     I L S        T +          ++NL+   N++  + +      + 
Sbjct: 343 EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402

Query: 425 -LTKLDLSHNNLKELEPTAFTNVPT-------LLHLNLSRNAHLSSLPVGGFDPLKKLEV 476
            ++ +D S+N +  ++   F  +         +  +NLS N  +S  P   F     L  
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSS 461

Query: 477 LDLAATGLKSIPQ-------YQFDELLNLKYLCLAHNHLTEIP-EMMFKNLLNLTYLDLS 528
           ++L    L  IP+         F     L  + L  N LT++  +     L  L  +DLS
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521

Query: 529 NNNIVNL-----RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
            N+            +L G     + D   N+      +           SL +L + +N
Sbjct: 522 YNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT-----LCPSLTQLQIGSN 576

Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGY 643
           ++  +          +  L +  N         +          L  ++ + I   D   
Sbjct: 577 DIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633

Query: 644 LPR 646
           + R
Sbjct: 634 IKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.0 bits (229), Expect = 2e-19
 Identities = 42/307 (13%), Positives = 95/307 (30%), Gaps = 16/307 (5%)

Query: 407 VRDNQITTLSSSALNYKLLTKLDLSHNNLKEL------EPTAFTNVPTLLHLNLSRNAHL 460
           V+DN +T  +   +      +    +  LKE+      +  +     T    N + N  L
Sbjct: 7   VKDNALTDDAIVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL 66

Query: 461 ---SSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMF- 516
               + P    +   ++  L L   G          +L  L+ L L  +       +   
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 517 KNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLE 576
           K +      +      ++ +   +   P     DL  + + +        KS   T    
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 577 ELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTI 636
           ++   +N +T++   +    +KL+   +  + F                 +    Q    
Sbjct: 187 QIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENE-----NSEYAQQYKT 240

Query: 637 DDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTN 696
           +D  +  L  L  + + N        T      ++Q+IN++ NR     +   +     +
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 697 YDMAPNL 703
             +   +
Sbjct: 301 APVGEKI 307

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  191 bits (488), Expect = 6e-54
 Identities = 79/485 (16%), Positives = 168/485 (34%), Gaps = 54/485 (11%)

Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
            PI        L       L    +           D +  L+ D     SI    +   
Sbjct: 12  TPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYL 67

Query: 266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
             L  ++ + N++  +     L++  L  I++  N++  I       L  +  L L  N+
Sbjct: 68  NNLTQINFSNNQLTDITPLKNLTK--LVDILMNNNQIADIT--PLANLTNLTGLTLFNNQ 123

Query: 326 LNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDL 385
           +  ++           L  ++ L L  N ++ +             S       L+ L  
Sbjct: 124 ITDID-------PLKNLTNLNRLELSSNTISDI-------------SALSGLTSLQQLSF 163

Query: 386 NGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTN 445
               + +L+      TL+ L++  N+++ +S  A     L  L  ++N + ++ P     
Sbjct: 164 GNQ-VTDLKPLANLTTLERLDISSNKVSDISVLA-KLTNLESLIATNNQISDITP--LGI 219

Query: 446 VPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAH 505
           +  L  L+L+ N  L  +       L  L  LDLA   + ++       L  L  L L  
Sbjct: 220 LTNLDELSLNGN-QLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274

Query: 506 NHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFN 565
           N ++ I       L  LT L+L+ N + ++    +  L ++  L L FN ++        
Sbjct: 275 NQISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP---- 326

Query: 566 TKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE 625
                + + L+ L   NN+++ +  SS    + +  L    N+ +      +  L+ + +
Sbjct: 327 ---VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379

Query: 626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLP 685
           + L++             +     +      + A +     +       ++++N      
Sbjct: 380 LGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT--ISDGGSYTEPDITWNLPSYTN 437

Query: 686 ERLFN 690
           E  + 
Sbjct: 438 EVSYT 442

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  183 bits (467), Expect = 5e-51
 Identities = 96/476 (20%), Positives = 180/476 (37%), Gaps = 52/476 (10%)

Query: 204 SLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLN 263
               +  T     L  +  L      IK+I+   ++  +NL ++   +N+ T I    L 
Sbjct: 32  GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LK 87

Query: 264 GPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGY 323
               L  + M  N+I  +   + L+   L  + L  N++T I+      L  ++ L L  
Sbjct: 88  NLTKLVDILMNNNQIADITPLANLTN--LTGLTLFNNQITDID--PLKNLTNLNRLELSS 143

Query: 324 NRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSL 383
           N ++ +++        +GL  +  L+ G                +T      +   L+ L
Sbjct: 144 NTISDISA-------LSGLTSLQQLSFGNQ--------------VTDLKPLANLTTLERL 182

Query: 384 DLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF 443
           D++ N + ++        L++L   +NQI+ ++        L +L L+ N LK++     
Sbjct: 183 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLKDIGT--L 239

Query: 444 TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCL 503
            ++  L  L+L+ N  +S+L       L KL  L L A  + +I       L  L  L L
Sbjct: 240 ASLTNLTDLDLANN-QISNLA--PLSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 294

Query: 504 AHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDY 563
             N L +I      NL NLTYL L  NNI ++    +  L  ++RL    NK++      
Sbjct: 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNKVSDVSSLA 350

Query: 564 FNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYL 623
             T        +  L+  +N+++ L  +     +++  L L    +   P      +S  
Sbjct: 351 NLTN-------INWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPVNYKANVSIP 401

Query: 624 QEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
             +      L  I            + ++  N     +E  +  S  + I   +  
Sbjct: 402 NTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTT 455

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  177 bits (452), Expect = 7e-49
 Identities = 99/476 (20%), Positives = 177/476 (37%), Gaps = 60/476 (12%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
             +          ++D +     D +  L+            I S      L NL  ++ 
Sbjct: 26  KMKTVLGKT---NVTDTVSQTDLDQVTTLQADRLG-------IKSIDGVEYLNNLTQINF 75

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
           S+NQ+  I    LK    L+++ M++N+   I    L     L  L++  N+I  +    
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPLK 131

Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
            L+   L R+ L  N ++ I   A +GL  +  L+ G    +              L  +
Sbjct: 132 NLTN--LNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--------LANLTTL 179

Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNL 405
             L++  N+             ++  S       L+SL    N + ++   G+   LD L
Sbjct: 180 ERLDISSNK-------------VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 226

Query: 406 NVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV 465
           ++  NQ+  + + A +   LT LDL++N +  L P   + +  L  L L  N  +S++  
Sbjct: 227 SLNGNQLKDIGTLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN-QISNIS- 281

Query: 466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525
                L  L  L+L    L+ I       L NL YL L  N++++I      +L  L  L
Sbjct: 282 -PLAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336

Query: 526 DLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNEL 585
              NN + ++   SL  L ++  L    N+++             N + + +L LN+   
Sbjct: 337 FFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTPL-------ANLTRITQLGLNDQAW 387

Query: 586 TYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDY 641
           T    +     S   T+K             I       E D++ N     ++  Y
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTG--ALIAPATISDGGSYTEPDITWNLPSYTNEVSY 441

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  174 bits (443), Expect = 1e-47
 Identities = 90/472 (19%), Positives = 161/472 (34%), Gaps = 78/472 (16%)

Query: 225 LSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKAD 284
             D  I  I           ++  +     T   S        +  L      I ++   
Sbjct: 9   TQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGV 64

Query: 285 SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAK 344
            +L+   L +I    N+LT I       L K+  + +  N++  +            L  
Sbjct: 65  EYLNN--LTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT-------PLANLTN 113

Query: 345 IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN 404
           +  L L  N++  +                ++   L  L+L+ N + ++ +     +L  
Sbjct: 114 LTGLTLFNNQITDI-------------DPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 160

Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLP 464
           L+   NQ+T L   A N   L +LD+S N + ++       +  L  L  + N  +S + 
Sbjct: 161 LSF-GNQVTDLKPLA-NLTTLERLDISSNKVSDISV--LAKLTNLESLIATNN-QISDIT 215

Query: 465 VGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTY 524
                 L  L+ L L    LK I       L NL  L LA+N ++ +       L  LT 
Sbjct: 216 --PLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269

Query: 525 LDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNE 584
           L L  N I N+    L GL ++  L+L+ N+L              N  +L  L L  N 
Sbjct: 270 LKLGANQISNIS--PLAGLTALTNLELNENQLEDISP-------ISNLKNLTYLTLYFNN 320

Query: 585 LTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYL 644
           ++ + P                          +  L+ LQ +   NN++  +       L
Sbjct: 321 ISDISP--------------------------VSSLTKLQRLFFYNNKVSDVSSL--ANL 352

Query: 645 PRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTN 696
             +  L+  +N I  ++     N +++  + L+       P          N
Sbjct: 353 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  156 bits (397), Expect = 2e-41
 Identities = 99/447 (22%), Positives = 177/447 (39%), Gaps = 61/447 (13%)

Query: 166 IRRLDFSGNALRRLS--DKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRIL 223
           + +++FS N L  ++    L       L ++ + +N        I   +    L NL  L
Sbjct: 70  LTQINFSNNQLTDITPLKNLTK-----LVDILMNNNQ-------IADITPLANLTNLTGL 117

Query: 224 DLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKA 283
            L +NQI  I+   LK   NL  L +  N  + I   +L+G  +L+ LS   N++  LK 
Sbjct: 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSF-GNQVTDLKP 172

Query: 284 DSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLA 343
            + L+   LER+ +  N+++ I       L  +  L    N+++ +            L 
Sbjct: 173 LANLTT--LERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDIT-------PLGILT 221

Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLD 403
            +  L+L  N+L  + +                   L  LDL  N + NL        L 
Sbjct: 222 NLDELSLNGNQLKDIGT-------------LASLTNLTDLDLANNQISNLAPLSGLTKLT 268

Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
            L +  NQI+ +S  A     LT L+L+ N L+++ P   +N+  L +L L  N ++S +
Sbjct: 269 ELKLGANQISNISPLA-GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN-NISDI 324

Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
                  L KL+ L      +  +       L N+ +L   HN ++++      NL  +T
Sbjct: 325 S--PVSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRIT 378

Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
            L L++    N     +    ++   +   N      G      +  +  S  E ++  N
Sbjct: 379 QLGLNDQAWTNA---PVNYKANVSIPNTVKNVT----GALIAPATISDGGSYTEPDITWN 431

Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFN 610
             +Y    S+T  S+  T+      F+
Sbjct: 432 LPSYTNEVSYTF-SQPVTIGKGTTTFS 457

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  183 bits (466), Expect = 3e-52
 Identities = 69/312 (22%), Positives = 120/312 (38%), Gaps = 25/312 (8%)

Query: 380 LKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKEL 438
           L+ +  +   L  +    L      L++++N+IT +      N K L  L L +N + ++
Sbjct: 33  LRVVQCSDLGLEKV-PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91

Query: 439 EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
            P AF  +  L  L LS+N  L  LP       K L+ L +    +  + +  F+ L  +
Sbjct: 92  SPGAFAPLVKLERLYLSKN-QLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 499 KYLCLAHNHLTE--IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
             + L  N L    I    F+ +  L+Y+ +++ NI  +  G    L     L L  NK+
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKI 204

Query: 557 TTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKEL 616
           T               ++L +L L+ N ++ +   S      L+ L L  NK    P  L
Sbjct: 205 TKVDAASLK-----GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259

Query: 617 ILGLSYLQEIDLSNNQLKTIDDYD------YGYLPRLRKLNLNNNNI--DAISETCFFNS 668
                Y+Q + L NN +  I   D               ++L +N +    I  + F   
Sbjct: 260 -ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 669 SQLQIINLSFNR 680
                + L   +
Sbjct: 319 YVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  180 bits (460), Expect = 2e-51
 Identities = 66/275 (24%), Positives = 122/275 (44%), Gaps = 23/275 (8%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
              LDL +N + E++   F N+  L  L L  N  +S +  G F PL KLE L L+   L
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQL 112

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNI--VNLRVGSLYG 542
           K +P+        L+ L +  N +T++ + +F  L  +  ++L  N +    +  G+  G
Sbjct: 113 KELPEKMPK---TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL 602
           +  +  + ++   +TT               SL EL+L+ N++T +  +S    + L  L
Sbjct: 170 MKKLSYIRIADTNITTIPQGLP--------PSLTELHLDGNKITKVDAASLKGLNNLAKL 221

Query: 603 KLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662
            L+FN  +      +    +L+E+ L+NN+L  +          ++ + L+NNNI AI  
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD-HKYIQVVYLHNNNISAIGS 280

Query: 663 TCFF------NSSQLQIINLSFNRLE--KLPERLF 689
             F         +    ++L  N ++  ++    F
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  180 bits (458), Expect = 3e-51
 Identities = 70/321 (21%), Positives = 128/321 (39%), Gaps = 53/321 (16%)

Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
           +  +LDL +N+I  I++G  K   NL  L + +N+ + I   +      L  L ++ N++
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
             L      +   L+ + +  N +T +    FNGL ++ ++ LG N    L S   + GA
Sbjct: 113 KELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNP---LKSSGIENGA 166

Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGL 398
           F G+ K+  + +    +  +                     L  L L+G           
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQGLPPS--------------LTELHLDG----------- 201

Query: 399 EDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
                      N+IT + +++L     L KL LS N++  ++  +  N P L  L+L+ N
Sbjct: 202 -----------NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250

Query: 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQF------DELLNLKYLCLAHNHL--T 509
             L  +P GG    K ++V+ L    + +I    F       +  +   + L  N +   
Sbjct: 251 -KLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308

Query: 510 EIPEMMFKNLLNLTYLDLSNN 530
           EI    F+ +     + L N 
Sbjct: 309 EIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  176 bits (448), Expect = 1e-49
 Identities = 63/321 (19%), Positives = 124/321 (38%), Gaps = 44/321 (13%)

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
                  +P    + P    +L +  N+I  +K   F + + L  +IL  N+++ I  GA
Sbjct: 39  SDLGLEKVPK---DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95

Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHIT 369
           F  L K+  L L  N+L +L     +         +  L +  N + K+    F G +  
Sbjct: 96  FAPLVKLERLYLSKNQLKELPEKMPKT--------LQELRVHENEITKVRKSVFNGLN-- 145

Query: 370 IFSFFQDFQKLKSLDLNGNFLINLESTGLEDT-------LDNLNVRDNQITTLSSSALNY 422
                    ++  ++L  N    L+S+G+E+        L  + + D  ITT+       
Sbjct: 146 ---------QMIVVELGTN---PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 193

Query: 423 KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAAT 482
             LT+L L  N + +++  +   +  L  L LS N  +S++  G       L  L L   
Sbjct: 194 --LTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN 250

Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMF------KNLLNLTYLDLSNNNI--VN 534
            L  +P     +   ++ + L +N+++ I    F          + + + L +N +    
Sbjct: 251 KLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309

Query: 535 LRVGSLYGLPSMKRLDLSFNK 555
           ++  +   +     + L   K
Sbjct: 310 IQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  175 bits (447), Expect = 1e-49
 Identities = 74/367 (20%), Positives = 133/367 (36%), Gaps = 73/367 (19%)

Query: 292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG 351
           L  +      L  +            +L+L  N++ ++       G F  L  +H L L 
Sbjct: 33  LRVVQCSDLGLEKVPKDLPPD---TALLDLQNNKITEIKD-----GDFKNLKNLHTLILI 84

Query: 352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQ 411
            N+++K++   F               KL+ L L+                       NQ
Sbjct: 85  NNKISKISPGAFAPLV-----------KLERLYLS----------------------KNQ 111

Query: 412 ITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA-HLSSLPVGGFDP 470
           +  L       K L +L +  N + ++  + F  +  ++ + L  N    S +  G F  
Sbjct: 112 LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
           +KKL  + +A T + +IPQ       +L  L L  N +T++     K L NL  L LS N
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 531 NIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFP 590
           +I  +  GSL   P ++ L L+ NKL    G   + K       ++ + L+NN ++ +  
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK------YIQVVYLHNNNISAIGS 280

Query: 591 SSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKT--IDDYDYGYLPRLR 648
           + F                   P       +    + L +N ++   I    +  +    
Sbjct: 281 NDFC------------------PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322

Query: 649 KLNLNNN 655
            + L N 
Sbjct: 323 AVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  154 bits (391), Expect = 7e-42
 Identities = 66/266 (24%), Positives = 105/266 (39%), Gaps = 37/266 (13%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
           L  +  S   L+++ P      P    L+L  N  ++ +  G F  LK L  L L    +
Sbjct: 33  LRVVQCSDLGLEKV-PKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKI 88

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
             I    F  L+ L+ L L+ N L E+PE M K L     L +  N I  +R     GL 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL---QELRVHENEITKVRKSVFNGLN 145

Query: 545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKL 604
            M  ++L  N L +                             +   +F    KL  +++
Sbjct: 146 QMIVVELGTNPLKSS---------------------------GIENGAFQGMKKLSYIRI 178

Query: 605 AFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETC 664
           A       P+ L      L E+ L  N++  +D      L  L KL L+ N+I A+    
Sbjct: 179 ADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 665 FFNSSQLQIINLSFNRLEKLPERLFN 690
             N+  L+ ++L+ N+L K+P  L +
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLAD 261

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 99.7 bits (249), Expect = 5e-23
 Identities = 38/228 (16%), Positives = 79/228 (34%), Gaps = 39/228 (17%)

Query: 154 LPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSE 213
           LP ++  +    ++ L    N + ++   +F+     +  + L  N    S         
Sbjct: 115 LPEKMPKT----LQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPLKSSG---IENGA 166

Query: 214 FHGLVNLRILD---------------------LSDNQIKAIEEGILKGCDNLLELRMDHN 252
           F G+  L  +                      L  N+I  ++   LKG +NL +L +  N
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF-- 310
             +++ + SL     LR L +  N++  +        ++++ + L  N ++ I    F  
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCP 285

Query: 311 ----NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNR 354
                  A    ++L     N +     Q   F  +     + LG  +
Sbjct: 286 PGYNTKKASYSGVSLFS---NPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  188 bits (478), Expect = 5e-52
 Identities = 91/477 (19%), Positives = 179/477 (37%), Gaps = 25/477 (5%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
               L ++ N     L      S+   L  LRIL +S N+I+ ++  + K    L  L +
Sbjct: 22  KTTILNISQNYI-SELWT----SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS-FLSQRWLERIILRGNRLTTIEGG 308
            HN+   I          L+ L +++N    L     F +   L+ + L    L      
Sbjct: 77  SHNKLVKISCHPT---VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 309 AFNGLAKIHI-LNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTH 367
               L    + L LG     K + +  Q      L  +   N  ++ +  ++  T     
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 368 ITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTL----SSSALNYK 423
           ++      +  K     L+    +         TL+N+    N    +      + + Y 
Sbjct: 194 LSNIKCVLEDNKCSYF-LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 424 LLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATG 483
            ++ + L           + T++  L    +  +          ++    + + +   +G
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD-VFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL--RVGSLY 541
            + +      ++    +L  ++N LT+       +L  L  L L  N +  L        
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 542 GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKT 601
            + S+++LD+S N ++  +           T SL  LN+++N LT           ++K 
Sbjct: 372 QMKSLQQLDISQNSVSYDE----KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKV 425

Query: 602 LKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
           L L  NK    PK+ ++ L  LQE+++++NQLK++ D  +  L  L+K+ L+ N  D
Sbjct: 426 LDLHSNKIKSIPKQ-VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  179 bits (455), Expect = 6e-49
 Identities = 76/470 (16%), Positives = 166/470 (35%), Gaps = 22/470 (4%)

Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
              IL++S N I  +    +     L  L + HNR   +        + L  L +++N++
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 279 GTLKADSFLSQRWLERIILRGNRLTTI-EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
             +     ++   L+ + L  N    +     F  ++++  L L    L K +       
Sbjct: 82  VKISCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
             + +    +L LG     K + +  Q  +           K     L+ +         
Sbjct: 139 NISKV----LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKE---LEPTAFTNVPTLLHLNL 454
                   + + +   ++ +       L+ L L++        +         T+ + ++
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 455 SRNAHLSSLPVGGFDP----LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
           S       L    FD     LK L +  + +        Y ++   N+       +    
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 511 IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
           +  +    +    +LD SNN + +    +   L  ++ L L  N+L         T    
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT--- 371

Query: 571 NTSSLEELNLNNNELTYLFPS-SFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS 629
              SL++L+++ N ++Y       +    L +L ++ N         +     ++ +DL 
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLH 429

Query: 630 NNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
           +N++K+I       L  L++LN+ +N + ++ +  F   + LQ I L  N
Sbjct: 430 SNKIKSIPK-QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  169 bits (430), Expect = 1e-45
 Identities = 84/482 (17%), Positives = 180/482 (37%), Gaps = 29/482 (6%)

Query: 222 ILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTL 281
           ++D S N +  + + + +       L +  N  + + +  +     LRIL +++NRI  L
Sbjct: 4   LVDRSKNGLIHVPKDLSQ---KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 282 KADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
               F   + LE + L  N+L  I   + +    +  L+L +N  + L         F  
Sbjct: 61  DISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFDALP----ICKEFGN 113

Query: 342 LAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLD---LNGNFLINLESTGL 398
           ++++  L L    L K +       +I+           +  D   L      +L     
Sbjct: 114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173

Query: 399 EDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSH---NNLKELEPTAFTNVPTLLHLNLS 455
            +   +  +  +  T  +    N K + + +      + L +L+     +  TL ++  +
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLK--SIPQYQFDELLNLKYLCLAHNHLTEIPE 513
            N+ +  L +     +    + ++   G        Y    L  L    +  +       
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 514 MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTS 573
            +++   N+   + + +    + +     +     LD S N LT    +        + +
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG-----HLT 348

Query: 574 SLEELNLNNNELTYLFPSS--FTIHSKLKTLKLAFNKFNYF-PKELILGLSYLQEIDLSN 630
            LE L L  N+L  L   +   T    L+ L ++ N  +Y   K        L  +++S+
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 631 NQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
           N L           PR++ L+L++N I +I +        LQ +N++ N+L+ +P+ +F+
Sbjct: 409 NILTDTIFR--CLPPRIKVLDLHSNKIKSIPKQ-VVKLEALQELNVASNQLKSVPDGIFD 465

Query: 691 TF 692
             
Sbjct: 466 RL 467

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  104 bits (260), Expect = 1e-23
 Identities = 39/296 (13%), Positives = 96/296 (32%), Gaps = 40/296 (13%)

Query: 162 SDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLR 221
           S++ +  ++ + N+  R+   ++      +    +++      L+          L  L 
Sbjct: 223 SNLTLNNIETTWNSFIRILQLVWHTT---VWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279

Query: 222 ILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTL 281
           I  +  +     +  I +   N+       +    +  +  +       L  + N     
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL---- 335

Query: 282 KADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
                               LT         L ++  L L  N+L +L+           
Sbjct: 336 --------------------LTDTVFENCGHLTELETLILQMNQLKELSKIA---EMTTQ 372

Query: 342 LAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDT 401
           +  +  L++  N ++                     + L SL+++ N L +     L   
Sbjct: 373 MKSLQQLDISQNSVSYDEKK----------GDCSWTKSLLSLNMSSNILTDTIFRCLPPR 422

Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
           +  L++  N+I ++    +  + L +L+++ N LK +    F  + +L  + L  N
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  185 bits (472), Expect = 8e-52
 Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 9/235 (3%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
              L+L  NN++ ++   F ++  L  L L RN  +  + VG F+ L  L  L+L    L
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNN-IVNLRVGSLYGL 543
             IP   F+ L  L+ L L +N +  IP   F  + +L  LDL     +  +  G+  GL
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
            ++K L+L    +                  LEEL ++ N    + P SF   S LK L 
Sbjct: 196 FNLKYLNLGMCNIKDM--PNLT-----PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
           +  ++ +   +    GL+ L E++L++N L ++    +  L  L +L+L++N  +
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  176 bits (449), Expect = 1e-48
 Identities = 70/256 (27%), Positives = 113/256 (44%), Gaps = 12/256 (4%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
            +K+  +   L E+     +N     +LNL  N ++  +    F  L  LEVL L    +
Sbjct: 56  FSKVVCTRRGLSEVPQGIPSN---TRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
           + I    F+ L +L  L L  N LT IP   F+ L  L  L L NN I ++   +   +P
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171

Query: 545 SMKRLDLS-FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
           S+ RLDL    KL       F         +L+ LNL    +  +   + T    L+ L+
Sbjct: 172 SLMRLDLGELKKLEYISEGAFE-----GLFNLKYLNLGMCNIKDM--PNLTPLVGLEELE 224

Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISET 663
           ++ N F         GLS L+++ + N+Q+  I+   +  L  L +LNL +NN+ ++   
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284

Query: 664 CFFNSSQLQIINLSFN 679
            F     L  ++L  N
Sbjct: 285 LFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  165 bits (419), Expect = 1e-44
 Identities = 64/263 (24%), Positives = 107/263 (40%), Gaps = 43/263 (16%)

Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
           N R L+L +N I+ I+    +   +L  L++  N    I   + NG  +L  L +  N +
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLG-YNRLNKLNSDTFQGG 337
             + + +F     L  + LR N + +I   AFN +  +  L+LG   +L  +       G
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI-----SEG 190

Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
           AF GL  +  LNLG   +  + +                   L+ L+++G          
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDMPN-------------LTPLVGLEELEMSG---------- 227

Query: 398 LEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSR 456
                       N    +   +      L KL + ++ +  +E  AF  + +L+ LNL+ 
Sbjct: 228 ------------NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275

Query: 457 NAHLSSLPVGGFDPLKKLEVLDL 479
           N  LSSLP   F PL+ L  L L
Sbjct: 276 NN-LSSLPHDLFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  150 bits (381), Expect = 2e-39
 Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 11/218 (5%)

Query: 473 KLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNI 532
           +   +     GL  +PQ       N +YL L  N++  I    F++L +L  L L  N+I
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPS---NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 533 VNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSS 592
             + VG+  GL S+  L+L  N LT      F        S L EL L NN +  +   +
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE-----YLSKLRELWLRNNPIESIPSYA 166

Query: 593 FTIHSKLKTLKLA-FNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLN 651
           F     L  L L    K  Y  +    GL  L+ ++L    +K + +     L  L +L 
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP--LVGLEELE 224

Query: 652 LNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
           ++ N+   I    F   S L+ + +  +++  +    F
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 83.3 bits (206), Expect = 5e-17
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 167 RRLDFSG-NALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
            RLD      L  +S+  F      L+ L L           I        LV L  L++
Sbjct: 174 MRLDLGELKKLEYISEGAFE-GLFNLKYLNLGMCN-------IKDMPNLTPLVGLEELEM 225

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
           S N    I  G   G  +L +L + +++ + I   + +G  +L  L++A+N + +L  D 
Sbjct: 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285

Query: 286 FLSQRWLERIILRGN 300
           F   R+L  + L  N
Sbjct: 286 FTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.9 bits (192), Expect = 3e-15
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 3/119 (2%)

Query: 572 TSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
           ++   ++      L+ + P    I S  + L L  N       +    L +L+ + L  N
Sbjct: 53  SNQFSKVVCTRRGLSEV-PQG--IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 632 QLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
            ++ I+   +  L  L  L L +N +  I    F   S+L+ + L  N +E +P   FN
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  184 bits (468), Expect = 2e-51
 Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 9/235 (3%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
              L+L  N ++ ++  +F ++  L  L LSRN H+ ++ +G F+ L  L  L+L    L
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNN-IVNLRVGSLYGL 543
            +IP   F  L  LK L L +N +  IP   F  + +L  LDL     +  +  G+  GL
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
            +++ L+L+   L                  L+EL+L+ N L+ + P SF     L+ L 
Sbjct: 185 SNLRYLNLAMCNLREI--PNLT-----PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
           +  ++     +     L  L EI+L++N L  +    +  L  L +++L++N  +
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  173 bits (441), Expect = 1e-47
 Identities = 74/256 (28%), Positives = 116/256 (45%), Gaps = 12/256 (4%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
            +K+     NL+E+     TN      LNL  N  +  + V  F  L+ LE+L L+   +
Sbjct: 45  FSKVICVRKNLREVPDGISTN---TRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
           ++I    F+ L NL  L L  N LT IP   F  L  L  L L NN I ++   +   +P
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160

Query: 545 SMKRLDLS-FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
           S++RLDL    +L+      F        S+L  LNL    L  +   + T   KL  L 
Sbjct: 161 SLRRLDLGELKRLSYISEGAFE-----GLSNLRYLNLAMCNLREI--PNLTPLIKLDELD 213

Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISET 663
           L+ N  +        GL +LQ++ +  +Q++ I+   +  L  L ++NL +NN+  +   
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273

Query: 664 CFFNSSQLQIINLSFN 679
            F     L+ I+L  N
Sbjct: 274 LFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  169 bits (431), Expect = 3e-46
 Identities = 71/252 (28%), Positives = 104/252 (41%), Gaps = 12/252 (4%)

Query: 440 PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK 499
           P+  +       +   R  +L  +P G         +L+L    ++ I    F  L +L+
Sbjct: 36  PSVCSCSNQFSKVICVRK-NLREVPDGIST---NTRLLNLHENQIQIIKVNSFKHLRHLE 91

Query: 500 YLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTF 559
            L L+ NH+  I    F  L NL  L+L +N +  +  G+   L  +K L L  N + + 
Sbjct: 92  ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151

Query: 560 KGDYFNTKSKPNTSSLEELNL-NNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL 618
               FN        SL  L+L     L+Y+   +F   S L+ L LA       P   + 
Sbjct: 152 PSYAFN-----RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LT 204

Query: 619 GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSF 678
            L  L E+DLS N L  I    +  L  L+KL +  + I  I    F N   L  INL+ 
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264

Query: 679 NRLEKLPERLFN 690
           N L  LP  LF 
Sbjct: 265 NNLTLLPHDLFT 276

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  162 bits (413), Expect = 7e-44
 Identities = 70/263 (26%), Positives = 116/263 (44%), Gaps = 43/263 (16%)

Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
           N R+L+L +NQI+ I+    K   +L  L++  N   +I   + NG   L  L +  NR+
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLG-YNRLNKLNSDTFQGG 337
            T+   +F+    L+ + LR N + +I   AFN +  +  L+LG   RL+ +       G
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI-----SEG 179

Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
           AF GL+ +  LNL    L ++ +                  KL  LDL+G          
Sbjct: 180 AFEGLSNLRYLNLAMCNLREIPN-------------LTPLIKLDELDLSG---------- 216

Query: 398 LEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSR 456
                       N ++ +   +      L KL +  + ++ +E  AF N+ +L+ +NL+ 
Sbjct: 217 ------------NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264

Query: 457 NAHLSSLPVGGFDPLKKLEVLDL 479
           N  L+ LP   F PL  LE + L
Sbjct: 265 NN-LTLLPHDLFTPLHHLERIHL 286

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  185 bits (470), Expect = 2e-51
 Identities = 70/513 (13%), Positives = 142/513 (27%), Gaps = 56/513 (10%)

Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMD 250
            +  ++ D+            S      N++ LDLS N +  I    L     L  L + 
Sbjct: 12  YKIEKVTDSSL-----KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 251 HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF 310
            N         L     LR L +  N +  L          +E +    N ++ +     
Sbjct: 67  SNVLYETL--DLESLSTLRTLDLNNNYVQELLVGPS-----IETLHAANNNISRVSCSRG 119

Query: 311 NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITI 370
            G      + L  N++  L             +++  L+L  N +            +  
Sbjct: 120 QGK---KNIYLANNKITMLRD-----LDEGCRSRVQYLDLKLNEI----------DTVNF 161

Query: 371 FSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDL 430
                    L+ L+L  NF+ +++   +   L  L++  N++  +     +   +T + L
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221

Query: 431 SHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQY 490
            +N L  +   A      L H +L  N          F   ++++ +      +K +   
Sbjct: 222 RNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT--VKKLTGQ 278

Query: 491 QFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL----YGLPSM 546
             +E               ++P      L+ L   + +  +        L          
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQ 338

Query: 547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAF 606
           + +D    +  T               +   L      L     +    H++L       
Sbjct: 339 REIDALKEQYRTVIDQVTL-----RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ- 392

Query: 607 NKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFF 666
                      +G   LQ      + L+ +      Y     +     NN          
Sbjct: 393 ----------AVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNN---AIRDWDM 439

Query: 667 NSSQLQIINLSFNRLEKLPERLFNTFLYTNYDM 699
              +   +     RL+KL           N  +
Sbjct: 440 YQHKETQLAEENARLKKLNGEADLALASANATL 472

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  185 bits (470), Expect = 3e-51
 Identities = 56/426 (13%), Positives = 132/426 (30%), Gaps = 41/426 (9%)

Query: 284 DSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLA 343
           +   +    +   +  + L             +  L+L  N L+++              
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-----SAADLAPFT 58

Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLD 403
           K+ +LNL  N L +                 +    L++LDLN N++  L       +++
Sbjct: 59  KLELLNLSSNVLYETLD-------------LESLSTLRTLDLNNNYVQELLVGP---SIE 102

Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
            L+  +N I+ +S S    +    + L++N +  L          + +L+L  N  + ++
Sbjct: 103 TLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTV 159

Query: 464 PVGGFDP-LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNL 522
                      LE L+L    +  +          LK L L+ N L  +    F++   +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGV 216

Query: 523 TYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN 582
           T++ L NN +V +   +L    +++  DL  N           T     + +     +  
Sbjct: 217 TWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHC------GTLRDFFSKNQRVQTVAK 269

Query: 583 NELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI-----LGLSYLQEIDLSNNQLKTID 637
             +  L   +    +               P         L       +    ++ + ++
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329

Query: 638 DYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNY 697
             +     R R+++        + +           +      L++            + 
Sbjct: 330 C-ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388

Query: 698 DMAPNL 703
            +   +
Sbjct: 389 TLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  169 bits (429), Expect = 1e-45
 Identities = 65/450 (14%), Positives = 132/450 (29%), Gaps = 57/450 (12%)

Query: 237 ILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERII 296
           I +  +     ++  +      +        ++ L ++ N +  + A        LE + 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
           L  N L          L+ +  L+L  N + +L               I  L+   N ++
Sbjct: 65  LSSNVLYETL--DLESLSTLRTLDLNNNYVQEL----------LVGPSIETLHAANNNIS 112

Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
           +++    QG                                      N+ + +N+IT L 
Sbjct: 113 RVSCSRGQG------------------------------------KKNIYLANNKITMLR 136

Query: 417 SSAL-NYKLLTKLDLSHNNLKELEPTAF-TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL 474
                    +  LDL  N +  +       +  TL HLNL  N  +  +         KL
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV--FAKL 193

Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
           + LDL++  L  +   +F     + ++ L +N L  I +   +   NL + DL  N    
Sbjct: 194 KTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHC 251

Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFT 594
             +   +   + +   ++   +    G      + P           +    +       
Sbjct: 252 GTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN 654
              +   L    ++      E     +  +EID    Q +T+ D           L    
Sbjct: 311 KRKEHALLSGQGSETERLECE-RENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

Query: 655 NNIDAISETCFFNSSQLQIINLSFNRLEKL 684
             +D          ++L           +L
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIEL 399

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  166 bits (422), Expect = 1e-44
 Identities = 69/470 (14%), Positives = 151/470 (32%), Gaps = 49/470 (10%)

Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
           + LD SGN L ++S    +P    L+ L L+ N+       ++ T +   L  LR LDL+
Sbjct: 37  KELDLSGNPLSQISAADLAPFTK-LELLNLSSNV-------LYETLDLESLSTLRTLDLN 88

Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSF 286
           +N ++ +  G      ++  L   +N  + +      G    + + +A N+I  L+    
Sbjct: 89  NNYVQELLVGP-----SIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDE 140

Query: 287 LSQRWLERIILRGNRLTTIEGGAF-NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
             +  ++ + L+ N + T+           +  LNL YN +  +             AK+
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-------FAKL 193

Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLEST-GLEDTLDN 404
             L+L  N+L  +  +            FQ    +  + L  N L+ +E        L++
Sbjct: 194 KTLDLSSNKLAFMGPE------------FQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241

Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLP 464
            ++R N     +      K      ++   +K+L              +         LP
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY-CCEDLP 300

Query: 465 VGGFDPLKKLEVLDLAATGLKSIP----QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLL 520
               D L  L+  + A    +       + + +     + +         + + +     
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQ 360

Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNL 580
               L+     +             +             +       +    S L+ L  
Sbjct: 361 AKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQH------ATEEQSPLQLLRA 414

Query: 581 NNNELTYLFPSSFTIHSK-LKTLKLAFNKFNYFPKELILGLSYLQEIDLS 629
                  ++    ++ +  ++   +  +K     +E         E DL+
Sbjct: 415 IVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 99.5 bits (248), Expect = 3e-22
 Identities = 42/348 (12%), Positives = 94/348 (27%), Gaps = 26/348 (7%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
           ++ LD   N +  ++    +   DTL+ L L  N        I+          L+ LDL
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-------IYDVKGQVVFAKLKTLDL 198

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
           S N++  +     +    +  + + +N+   I   +L   + L    +  N         
Sbjct: 199 SSNKLAFMGPEF-QSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
           F S+       +    +  + G          + + G      L +            + 
Sbjct: 257 FFSK-NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEH 315

Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL--INLESTGLEDTLD 403
            +L+   +   +L  +                 + + +D        +  + T  +    
Sbjct: 316 ALLSGQGSETERLECERENQA------------RQREIDALKEQYRTVIDQVTLRKQAKI 363

Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
            L  +   +    S+           L     +     A      L  L      +    
Sbjct: 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMY 423

Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQ--YQFDELLNLKYLCLAHNHLT 509
                     +   D+       + +   +  +L     L LA  + T
Sbjct: 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  174 bits (442), Expect = 2e-49
 Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 6/213 (2%)

Query: 396 TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
            G+      + +  N+I+ + +++    + LT L L  N L  ++  AFT +  L  L+L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
           S NA L S+    F  L +L  L L   GL+ +    F  L  L+YL L  N L  +P+ 
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 515 MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSS 574
            F++L NLT+L L  N I ++   +  GL S+ RL L  N++       F      +   
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR-----DLGR 202

Query: 575 LEELNLNNNELTYLFPSSFTIHSKLKTLKLAFN 607
           L  L L  N L+ L   +      L+ L+L  N
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  145 bits (367), Expect = 4e-39
 Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 9/209 (4%)

Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
           GL+++P          + + L  N ++ +P   F+   NLT L L +N +  +   +  G
Sbjct: 22  GLQAVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78

Query: 543 LPSMKRLDLSFN-KLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKT 601
           L  +++LDLS N +L +     F+         L  L+L+   L  L P  F   + L+ 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFH-----GLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 602 LKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS 661
           L L  N     P +    L  L  + L  N++ ++ +  +  L  L +L L+ N +  + 
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 662 ETCFFNSSQLQIINLSFNRLEKLPERLFN 690
              F +  +L  + L  N L  LP     
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALA 222

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  140 bits (356), Expect = 1e-37
 Identities = 62/262 (23%), Positives = 96/262 (36%), Gaps = 61/262 (23%)

Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
              + + L  N+I  +     + C NL  L +  N    I + +  G   L  L ++ N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN- 90

Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
                                  +L +++   F+GL ++H L+L    L +L       G
Sbjct: 91  ----------------------AQLRSVDPATFHGLGRLHTLHLDRCGLQEL-----GPG 123

Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
            F GLA +  L L  N L  L  DTF+               L  L L+GN + ++    
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLG-----------NLTHLFLHGNRISSVP--- 169

Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
            E     L                   L +L L  N +  + P AF ++  L+ L L  N
Sbjct: 170 -ERAFRGL-----------------HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 458 AHLSSLPVGGFDPLKKLEVLDL 479
             LS+LP     PL+ L+ L L
Sbjct: 212 N-LSALPTEALAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  133 bits (336), Expect = 8e-35
 Identities = 60/230 (26%), Positives = 96/230 (41%), Gaps = 25/230 (10%)

Query: 162 SDIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
             IP   +R+   GN +  +    F   R+ L  L L  N+    ++     + F GL  
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRN-LTILWLHSNVLA-RIDA----AAFTGLAL 81

Query: 220 LRILDLSDN-QIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
           L  LDLSDN Q+++++     G   L  L +D      +      G  AL+ L +  N +
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
             L  D+F     L  + L GNR++++   AF GL  +  L L  NR+  ++       A
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-----HA 196

Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN 388
           F  L ++  L L  N L+ L ++                + L+ L LN N
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAP-----------LRALQYLRLNDN 235

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  173 bits (441), Expect = 9e-49
 Identities = 67/357 (18%), Positives = 128/357 (35%), Gaps = 50/357 (14%)

Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCD-NLLELRMDHNRFTSIPSVSLNGPRALRILS 272
             G+ +L  L  + + +         GC  +L  ++       ++P           +L 
Sbjct: 10  TSGIPDLDSLPPTYSAMCP------FGCHCHLRVVQCSDLGLKAVPK---EISPDTTLLD 60

Query: 273 MAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSD 332
           +  N I  L+ D F   + L  ++L  N+++ I   AF+ L K+  L +  N L ++  +
Sbjct: 61  LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN 120

Query: 333 TFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLIN 392
                       +  L +  NR+ K+    F G              +  +++ GN    
Sbjct: 121 LPSS--------LVELRIHDNRIRKVPKGVFSGLR-----------NMNCIEMGGN---P 158

Query: 393 LESTGLED------TLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNV 446
           LE++G E        L+ L + + ++T +       + L +L L HN ++ +E       
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRY 216

Query: 447 PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
             L  L L  N  +  +  G    L  L  L L    L  +P     +L  L+ + L  N
Sbjct: 217 SKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTN 274

Query: 507 HLTEIPEMMFK------NLLNLTYLDLSNNNIVNLRV--GSLYGLPSMKRLDLSFNK 555
           ++T++    F              + L NN +    V   +   +     +     K
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  172 bits (439), Expect = 2e-48
 Identities = 61/312 (19%), Positives = 113/312 (36%), Gaps = 26/312 (8%)

Query: 380 LKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKEL 438
           L+ +  +   L  +    +      L++++N I+ L        + L  L L +N + ++
Sbjct: 35  LRVVQCSDLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 439 EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
              AF+ +  L  L +S+N HL  +P         L  L +    ++ +P+  F  L N+
Sbjct: 94  HEKAFSPLRKLQKLYISKN-HLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 499 KYLCLAHNHLTE--IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
             + +  N L         F  L  L YL +S   +  +         ++  L L  NK+
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKI 205

Query: 557 TTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKEL 616
              + +          S L  L L +N++  +   S +    L+ L L  NK +  P  L
Sbjct: 206 QAIELEDLL-----RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260

Query: 617 ILGLSYLQEIDLSNNQLKTIDDYD------YGYLPRLRKLNLNNNNID--AISETCFFNS 668
              L  LQ + L  N +  +   D               ++L NN +    +    F   
Sbjct: 261 -PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319

Query: 669 SQLQIINLSFNR 680
           +    I     +
Sbjct: 320 TDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  169 bits (429), Expect = 5e-47
 Identities = 65/316 (20%), Positives = 114/316 (36%), Gaps = 46/316 (14%)

Query: 345 IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED--TL 402
             +L+L  N +++L  D F+G            Q L +L L  N +  +          L
Sbjct: 56  TTLLDLQNNDISELRKDDFKG-----------LQHLYALVLVNNKISKIHEKAFSPLRKL 104

Query: 403 DNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA-HLS 461
             L +  N +  +  +      L +L +  N ++++    F+ +  +  + +  N    S
Sbjct: 105 QKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162

Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521
               G FD LK L  L ++   L  IP+   +    L  L L HN +  I          
Sbjct: 163 GFEPGAFDGLK-LNYLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSK 218

Query: 522 LTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLN 581
           L  L L +N I  +  GSL  LP+++ L L  NKL+       + K       L+ + L+
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK------LLQVVYLH 272

Query: 582 NNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLK--TIDDY 639
            N +T +  + F                   P    +  +Y   I L NN +    +   
Sbjct: 273 TNNITKVGVNDFC------------------PVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

Query: 640 DYGYLPRLRKLNLNNN 655
            +  +     +   N 
Sbjct: 315 TFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  168 bits (427), Expect = 9e-47
 Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 22/266 (8%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
            T LDL +N++ EL    F  +  L  L L  N  +S +    F PL+KL+ L ++   L
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNI--VNLRVGSLYG 542
             IP        +L  L +  N + ++P+ +F  L N+  +++  N +       G+  G
Sbjct: 115 VEIPPNLPS---SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL 602
           L  +  L +S  KLT    D           +L EL+L++N++  +       +SKL  L
Sbjct: 172 L-KLNYLRISEAKLTGIPKDLP--------ETLNELHLDHNKIQAIELEDLLRYSKLYRL 222

Query: 603 KLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662
            L  N+        +  L  L+E+ L NN+L  +       L  L+ + L+ NNI  +  
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD-LKLLQVVYLHTNNITKVGV 281

Query: 663 TCF------FNSSQLQIINLSFNRLE 682
             F         +    I+L  N + 
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  162 bits (411), Expect = 1e-44
 Identities = 79/373 (21%), Positives = 134/373 (35%), Gaps = 87/373 (23%)

Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
           R +  S   L+ +  ++          L L +N     L       +F GL +L  L L 
Sbjct: 36  RVVQCSDLGLKAVPKEISP----DTTLLDLQNNDI-SELRK----DDFKGLQHLYALVLV 86

Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSF 286
           +N+I  I E        L +L +  N    IP    N P +L  L               
Sbjct: 87  NNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP---NLPSSLVELR-------------- 129

Query: 287 LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIH 346
                     +  NR+  +  G F+GL  ++ + +G N    L +  F+ GAF+GL K++
Sbjct: 130 ----------IHDNRIRKVPKGVFSGLRNMNCIEMGGNP---LENSGFEPGAFDGL-KLN 175

Query: 347 ILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLN 406
            L +   +L  +  D                + L  L L+                    
Sbjct: 176 YLRISEAKLTGIPKDL--------------PETLNELHLDH------------------- 202

Query: 407 VRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV 465
              N+I  +    L  Y  L +L L HN ++ +E  + + +PTL  L+L  N  LS +P 
Sbjct: 203 ---NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVP- 257

Query: 466 GGFDPLKKLEVLDLAATGLKSIPQYQF------DELLNLKYLCLAHNHLT--EIPEMMFK 517
            G   LK L+V+ L    +  +    F       +      + L +N +   E+    F+
Sbjct: 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317

Query: 518 NLLNLTYLDLSNN 530
            + +   +   N 
Sbjct: 318 CVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  153 bits (389), Expect = 1e-41
 Identities = 64/266 (24%), Positives = 106/266 (39%), Gaps = 38/266 (14%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
           L  +  S   LK + P   +  P    L+L  N  +S L    F  L+ L  L L    +
Sbjct: 35  LRVVQCSDLGLKAV-PKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKI 90

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
             I +  F  L  L+ L ++ NHL EIP  +  +L     L + +N I  +  G   GL 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSL---VELRIHDNRIRKVPKGVFSGLR 147

Query: 545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKL 604
           +M  +++  N L                             +   P +F    KL  L++
Sbjct: 148 NMNCIEMGGNPLEN---------------------------SGFEPGAFD-GLKLNYLRI 179

Query: 605 AFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETC 664
           +  K    PK+L      L E+ L +N+++ I+  D     +L +L L +N I  I    
Sbjct: 180 SEAKLTGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236

Query: 665 FFNSSQLQIINLSFNRLEKLPERLFN 690
                 L+ ++L  N+L ++P  L +
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPAGLPD 262

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  171 bits (437), Expect = 5e-48
 Identities = 81/392 (20%), Positives = 151/392 (38%), Gaps = 46/392 (11%)

Query: 292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG 351
              +      +  I       LA+     L    +  + +          L  I  L + 
Sbjct: 2   AATLATLPAPINQIF--PDADLAEGIRAVLQKASVTDVVT-------QEELESITKLVVA 52

Query: 352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQ 411
             ++  +                +    L+ L+LNGN + ++        L NL +  N+
Sbjct: 53  GEKVASI-------------QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK 99

Query: 412 ITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPL 471
           IT +S+   N   L +L L+ +N+ ++ P    N+  +  LNL  N +LS L       +
Sbjct: 100 ITDISALQ-NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS--PLSNM 154

Query: 472 KKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNN 531
             L  L +  + +K +       L +L  L L +N + +I      +L +L Y     N 
Sbjct: 155 TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ 210

Query: 532 IVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPS 591
           I ++    +  +  +  L +  NK+T             N S L  L +  N+++ +  +
Sbjct: 211 ITDIT--PVANMTRLNSLKIGNNKITDLSPL-------ANLSQLTWLEIGTNQISDI--N 259

Query: 592 SFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLN 651
           +    +KLK L +  N+ +      +  LS L  + L+NNQL   D    G L  L  L 
Sbjct: 260 AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 652 LNNNNIDAISETCFFNSSQLQIINLSFNRLEK 683
           L+ N+I  I      + S++   + +   ++K
Sbjct: 318 LSQNHITDIRP--LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  171 bits (436), Expect = 7e-48
 Identities = 73/381 (19%), Positives = 142/381 (37%), Gaps = 44/381 (11%)

Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
            PI        L       L    +  +     +  +++ +L +   +  SI    +   
Sbjct: 10  APINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG--IEYL 65

Query: 266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
             L  L++  N+I  +   S L +  L  + +  N++T I   A   L  +  L L  + 
Sbjct: 66  TNLEYLNLNGNQITDISPLSNLVK--LTNLYIGTNKITDIS--ALQNLTNLRELYLNEDN 121

Query: 326 LNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDL 385
           ++ ++           L K++ LNLG N              ++  S   +   L  L +
Sbjct: 122 ISDIS-------PLANLTKMYSLNLGANHN------------LSDLSPLSNMTGLNYLTV 162

Query: 386 NGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTN 445
             + + ++        L +L++  NQI  +S  A +   L       N + ++ P    N
Sbjct: 163 TESKVKDVTPIANLTDLYSLSLNYNQIEDISPLA-SLTSLHYFTAYVNQITDITP--VAN 219

Query: 446 VPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAH 505
           +  L  L +  N  ++ L       L +L  L++    +  I      +L  LK L +  
Sbjct: 220 MTRLNSLKIGNN-KITDLS--PLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGS 274

Query: 506 NHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFN 565
           N +++I      NL  L  L L+NN + N  +  + GL ++  L LS N +T        
Sbjct: 275 NQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI------ 326

Query: 566 TKSKPNTSSLEELNLNNNELT 586
            +   + S ++  +  N  + 
Sbjct: 327 -RPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  169 bits (430), Expect = 6e-47
 Identities = 78/419 (18%), Positives = 154/419 (36%), Gaps = 73/419 (17%)

Query: 216 GLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAY 275
           G   L         I  I           +   +     T +   +     ++  L +A 
Sbjct: 1   GAATLA---TLPAPINQIFP--DADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAG 53

Query: 276 NRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQ 335
            ++ +++   +L+   LE + L GN++T I     + L K+  L +G N++  ++     
Sbjct: 54  EKVASIQGIEYLTN--LEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDIS----- 104

Query: 336 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES 395
             A   L  +  L L  + ++ +             S   +  K+ SL+L  N  ++  S
Sbjct: 105 --ALQNLTNLRELYLNEDNISDI-------------SPLANLTKMYSLNLGANHNLSDLS 149

Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
                           ++ ++        L  L ++ + +K++ P    N+  L  L+L+
Sbjct: 150 P---------------LSNMTG-------LNYLTVTESKVKDVTP--IANLTDLYSLSLN 185

Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
            N  +  +       L  L         +  I       +  L  L + +N +T++    
Sbjct: 186 YN-QIEDIS--PLASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLSP-- 238

Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSL 575
             NL  LT+L++  N I ++   ++  L  +K L++  N+++       N     N S L
Sbjct: 239 LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDISV--LN-----NLSQL 289

Query: 576 EELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLK 634
             L LNNN+L           + L TL L+ N         +  LS +   D +N  +K
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  166 bits (424), Expect = 3e-46
 Identities = 75/368 (20%), Positives = 142/368 (38%), Gaps = 44/368 (11%)

Query: 319 LNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQ 378
           L      +N++  D         LA+     L    +  +                ++ +
Sbjct: 5   LATLPAPINQIFPD-------ADLAEGIRAVLQKASVTDV-------------VTQEELE 44

Query: 379 KLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKEL 438
            +  L + G  + +++       L+ LN+  NQIT +S  + N   LT L +  N + ++
Sbjct: 45  SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLS-NLVKLTNLYIGTNKITDI 103

Query: 439 EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
                 N+  L  L L+ + ++S +       L K+  L+L A    S        +  L
Sbjct: 104 SA--LQNLTNLRELYLNED-NISDIS--PLANLTKMYSLNLGANHNLSDLS-PLSNMTGL 157

Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
            YL +  + + ++      NL +L  L L+ N I ++    L  L S+       N++T 
Sbjct: 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITD 213

Query: 559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL 618
                       N + L  L + NN++T L  S     S+L  L++  N+ +      + 
Sbjct: 214 IT-------PVANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISDINA--VK 262

Query: 619 GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSF 678
            L+ L+ +++ +NQ+  I       L +L  L LNNN +           + L  + LS 
Sbjct: 263 DLTKLKMLNVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

Query: 679 NRLEKLPE 686
           N +  +  
Sbjct: 321 NHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.7 bits (195), Expect = 7e-16
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 17/169 (10%)

Query: 522 LTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLN 581
              L      I  +       L    R  L    +T       +  ++    S+ +L + 
Sbjct: 2   AATLATLPAPINQIF--PDADLAEGIRAVLQKASVT-------DVVTQEELESITKLVVA 52

Query: 582 NNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDY 641
             ++  +        + L+ L L  N+        +  L  L  + +  N++  I     
Sbjct: 53  GEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISAL-- 106

Query: 642 GYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
             L  LR+L LN +NI  IS     N +++  +NL  N        L N
Sbjct: 107 QNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSN 153

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 16/114 (14%)

Query: 167 RRLDFSGNALRRLS--DKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILD 224
             L+   N +  ++    L       L+ L +  N        I   S  + L  L  L 
Sbjct: 246 TWLEIGTNQISDINAVKDLTK-----LKMLNVGSN-------QISDISVLNNLSQLNSLF 293

Query: 225 LSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
           L++NQ+   +  ++ G  NL  L +  N  T I    L     +     A   I
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDSADFANQVI 345

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  170 bits (433), Expect = 2e-47
 Identities = 64/287 (22%), Positives = 124/287 (43%), Gaps = 26/287 (9%)

Query: 396 TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
           +GL + + +L++ +N+IT +S+S L     L  L L+ N +  +E  +F+++ +L HL+L
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107

Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQY-QFDELLNLKYLCLAHNH-LTEIP 512
           S N +LS+L    F PL  L  L+L     K++ +   F  L  L+ L + +    T+I 
Sbjct: 108 SYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 513 EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT 572
              F  L  L  L++  +++ +    SL  + ++  L L   +       + +      T
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD-----VT 221

Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
           SS+E L L + +L     S  +            N          +     + + +++  
Sbjct: 222 SSVECLELRDTDLDTFHFSELS--------TGETNSL--------IKKFTFRNVKITDES 265

Query: 633 LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
           L  +       +  L +L  + N + ++ +  F   + LQ I L  N
Sbjct: 266 LFQVMKLLNQ-ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  151 bits (384), Expect = 1e-40
 Identities = 60/324 (18%), Positives = 111/324 (34%), Gaps = 57/324 (17%)

Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
                L +I  G       +  L+L  NR+  +++             +  L L  N +N
Sbjct: 38  GSSGSLNSIPSGLT---EAVKSLDLSNNRITYISN-----SDLQRCVNLQALVLTSNGIN 89

Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
            +  D+F                          L +LE          L++  N ++ LS
Sbjct: 90  TIEEDSFSS------------------------LGSLEH---------LDLSYNYLSNLS 116

Query: 417 SSALNY-KLLTKLDLSHNNLKELEPT-AFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL 474
           SS       LT L+L  N  K L  T  F+++  L  L +      + +    F  L  L
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176

Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
           E L++ A+ L+S        + N+ +L L       + E+      ++  L+L + ++  
Sbjct: 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236

Query: 535 LRV--------GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT 586
                       SL    + + + ++   L                S L EL  + N+L 
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN------QISGLLELEFSRNQLK 290

Query: 587 YLFPSSFTIHSKLKTLKLAFNKFN 610
            +    F   + L+ + L  N ++
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  145 bits (367), Expect = 2e-38
 Identities = 54/280 (19%), Positives = 98/280 (35%), Gaps = 33/280 (11%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
            ++ L L++N     ++     S+    VNL+ L L+ N I  IEE       +L  L +
Sbjct: 53  AVKSLDLSNNRI-TYISN----SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQ-RWLERIILRGN-RLTTIEG 307
            +N  +++ S       +L  L++  N   TL   S  S    L+ + +      T I+ 
Sbjct: 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 308 GAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTH 367
             F GL  +  L +  + L        +  +   +  +  L L   +   L       T 
Sbjct: 168 KDFAGLTFLEELEIDASDLQSY-----EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222

Query: 368 ITIFSFFQDFQKLKSLDLNGNFLINLESTGLED----------TLDNLNVRDNQITTLSS 417
                       ++ L+L    L     + L            T  N+ + D  +  +  
Sbjct: 223 -----------SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

Query: 418 SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
                  L +L+ S N LK +    F  + +L  + L  N
Sbjct: 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  144 bits (364), Expect = 5e-38
 Identities = 64/323 (19%), Positives = 108/323 (33%), Gaps = 71/323 (21%)

Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
             ++ LDLS+N+I  I    L+ C NL  L +  N   +I                    
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE------------------- 92

Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
                 DSF S   LE + L  N L+ +    F  L+ +  LNL  N    L     +  
Sbjct: 93  -----EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG----ETS 143

Query: 338 AFNGLAKIHILNLGYN-RLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLEST 396
            F+ L K+ IL +G      K+    F G              L+ L+++          
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLT-----------FLEELEID---------- 182

Query: 397 GLEDTLDNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
                        + + +    +L   + ++ L L       L         ++  L L 
Sbjct: 183 ------------ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230

Query: 456 RNA----HLSSLPVGGFDPLKK---LEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHL 508
                  H S L  G  + L K      + +    L  + +   +++  L  L  + N L
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELEFSRNQL 289

Query: 509 TEIPEMMFKNLLNLTYLDLSNNN 531
             +P+ +F  L +L  + L  N 
Sbjct: 290 KSVPDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  129 bits (325), Expect = 8e-33
 Identities = 50/269 (18%), Positives = 99/269 (36%), Gaps = 39/269 (14%)

Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
            +  L+S+P G  +    ++ LDL+   +  I        +NL+ L L  N +  I E  
Sbjct: 39  SSGSLNSIPSGLTE---AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95

Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSL 575
           F +L +L +LDLS N + NL       L S+  L+L  N   T       +    + + L
Sbjct: 96  FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS----HLTKL 151

Query: 576 EELNLNNNE-LTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLK 634
           + L + N +  T +    F   + L+ L++  +    +  + +  +  +  + L   Q  
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 635 TIDDYDYGYLPRLRKLNLNNNNIDAISET------------------------------- 663
            + +        +  L L + ++D    +                               
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

Query: 664 CFFNSSQLQIINLSFNRLEKLPERLFNTF 692
                S L  +  S N+L+ +P+ +F+  
Sbjct: 272 LLNQISGLLELEFSRNQLKSVPDGIFDRL 300

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  128 bits (324), Expect = 1e-32
 Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 15/218 (6%)

Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
            L SIP    +    +K L L++N +T I     +  +NL  L L++N I  +   S   
Sbjct: 42  SLNSIPSGLTE---AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98

Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSS-FTIHSKLKT 601
           L S++ LDLS+N L+     +F        SSL  LNL  N    L  +S F+  +KL+ 
Sbjct: 99  LGSLEHLDLSYNYLSNLSSSWFK-----PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 602 LKLAFN-KFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAI 660
           L++     F    ++   GL++L+E+++  + L++ +      +  +  L L+      +
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213

Query: 661 SETCFFNSSQLQIINLSFNRLE-----KLPERLFNTFL 693
            E     +S ++ + L    L+     +L     N+ +
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  120 bits (303), Expect = 7e-30
 Identities = 47/272 (17%), Positives = 85/272 (31%), Gaps = 40/272 (14%)

Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
           + L  + N +  + +  FS    +L+ L L+ N    +L+     S F  L +L  L+L 
Sbjct: 79  QALVLTSNGINTIEEDSFS-SLGSLEHLDLSYNYLS-NLSS----SWFKPLSSLTFLNLL 132

Query: 227 DNQIKAI-EEGILKGCDNLLELRMDHN-RFTSIPSVSLNGPRALRILSMAYNRIGTLKAD 284
            N  K + E  +      L  LR+ +   FT I      G   L  L +  + + + +  
Sbjct: 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192

Query: 285 SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAK 344
           S  S + +  +IL   +   +     +  + +  L L    L+  +      G  N L K
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252

Query: 345 IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN 404
                        L           +         L  L+ +                  
Sbjct: 253 KFTFRNVKITDESLFQ---------VMKLLNQISGLLELEFS------------------ 285

Query: 405 LNVRDNQITTLSSSAL-NYKLLTKLDLSHNNL 435
                NQ+ ++          L K+ L  N  
Sbjct: 286 ----RNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 27/183 (14%), Positives = 59/183 (32%), Gaps = 15/183 (8%)

Query: 153 ILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTS 212
           +    +FS           + +   ++  K F+     L+EL +  +     L      S
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDAS----DLQSYEPKS 193

Query: 213 EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNR-----FTSIPSV---SLNG 264
               + N+  L L   Q   + E  +    ++  L +         F+ + +    SL  
Sbjct: 194 -LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252

Query: 265 PRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
               R + +    +  +          L  +    N+L ++  G F+ L  +  + L  N
Sbjct: 253 KFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

Query: 325 RLN 327
             +
Sbjct: 312 PWD 314

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  168 bits (427), Expect = 4e-47
 Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 34/261 (13%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAH-LSSLPVGGFDPLKKLEVLDLAATG 483
            T+L+L  N L+ L    F  +  L  L+LS N                 L+ LDL+  G
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEM-MFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
           + ++    F  L  L++L   H++L ++ E  +F +L NL YLD+S+ +      G   G
Sbjct: 90  VITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 543 LPSMKRLDLSFNK-LTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKT 601
           L S++ L ++ N     F  D F         +L  L+L+  +L  L P++F        
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFT-----ELRNLTFLDLSQCQLEQLSPTAFN------- 196

Query: 602 LKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS 661
                             LS LQ +++S+N   ++D + Y  L  L+ L+ + N+I    
Sbjct: 197 -----------------SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 662 ETCFFN-SSQLQIINLSFNRL 681
           +    +  S L  +NL+ N  
Sbjct: 240 KQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  165 bits (419), Expect = 5e-46
 Identities = 59/267 (22%), Positives = 111/267 (41%), Gaps = 36/267 (13%)

Query: 291 WLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNL 350
              R+ L  N+L ++  G F+ L ++  L+L  N L+          +  G   +  L+L
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC---CSQSDFGTTSLKYLDL 85

Query: 351 GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN 410
            +N +  ++S+            F   ++L+ LD   + L  +    +  +L NL     
Sbjct: 86  SFNGVITMSSN------------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL----- 128

Query: 411 QITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470
                            LD+SH + +      F  + +L  L ++ N+   +     F  
Sbjct: 129 ---------------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
           L+ L  LDL+   L+ +    F+ L +L+ L ++HN+   +    +K L +L  LD S N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 531 NIVNLRVGSLYGLP-SMKRLDLSFNKL 556
           +I+  +   L   P S+  L+L+ N  
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  137 bits (348), Expect = 3e-36
 Identities = 59/315 (18%), Positives = 112/315 (35%), Gaps = 84/315 (26%)

Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
           +   L+L  N+++++  G+      L +L +  N  +                       
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG-------------------- 68

Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
               + S      L+ + L  N + T+    F GL ++  L+  ++ L +++        
Sbjct: 69  --CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF----SV 121

Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGL 398
           F  L  +  L++ +       +  F G              L+ L + GN   + +   L
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLS-----------SLEVLKMAGN---SFQENFL 167

Query: 399 EDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA 458
            D    L                 + LT LDLS   L++L PTAF ++ +L  LN+S N 
Sbjct: 168 PDIFTEL-----------------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN- 209

Query: 459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKN 518
           +  SL    +  L  L+VLD                         + NH+    +   ++
Sbjct: 210 NFFSLDTFPYKCLNSLQVLD------------------------YSLNHIMTSKKQELQH 245

Query: 519 LL-NLTYLDLSNNNI 532
              +L +L+L+ N+ 
Sbjct: 246 FPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  135 bits (341), Expect = 2e-35
 Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 13/218 (5%)

Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNI--VN 534
           +   + GL S+P        +   L L  N L  +P  +F  L  LT L LS+N +    
Sbjct: 12  IRCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSS-F 593
               S +G  S+K LDLSFN + T   ++           LE L+  ++ L  +   S F
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL------EQLEHLDFQHSNLKQMSEFSVF 122

Query: 594 TIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ-LKTIDDYDYGYLPRLRKLNL 652
                L  L ++          +  GLS L+ + ++ N   +      +  L  L  L+L
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 653 NNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
           +   ++ +S T F + S LQ++N+S N    L    + 
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  129 bits (327), Expect = 2e-33
 Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 28/258 (10%)

Query: 162 SDIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
           + IP    RL+   N L+ L   +F      L +L L+ N          S     G  +
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKGCCSQS---DFGTTS 79

Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL-NGPRALRILSMAYNRI 278
           L+ LDLS N +  +      G + L  L   H+    +   S+    R L  L +++   
Sbjct: 80  LKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 279 GTLKADSFLSQRWLERIILRGNR-LTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
                  F     LE + + GN          F  L  +  L+L   +L +L        
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-----SPT 193

Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES-- 395
           AFN L+ + +LN+ +N    L++  ++  +            L+ LD + N ++  +   
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-----------SLQVLDYSLNHIMTSKKQE 242

Query: 396 -TGLEDTLDNLNVRDNQI 412
                 +L  LN+  N  
Sbjct: 243 LQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  121 bits (306), Expect = 1e-30
 Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 11/192 (5%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
           ++ LD S N +  +S       +  L+ L    +    +L  +   S F  L NL  LD+
Sbjct: 80  LKYLDLSFNGVITMSSNFLGLEQ--LEHLDFQHS----NLKQMSEFSVFLSLRNLIYLDI 133

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRF-TSIPSVSLNGPRALRILSMAYNRIGTLKAD 284
           S    +    GI  G  +L  L+M  N F  +         R L  L ++  ++  L   
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193

Query: 285 SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAK 344
           +F S   L+ + +  N   +++   +  L  + +L+   N +        Q    +  + 
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ----HFPSS 249

Query: 345 IHILNLGYNRLN 356
           +  LNL  N   
Sbjct: 250 LAFLNLTQNDFA 261

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  173 bits (439), Expect = 2e-46
 Identities = 85/475 (17%), Positives = 166/475 (34%), Gaps = 21/475 (4%)

Query: 189 DTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELR 248
              + L L+ N     L       +   L  LR+L LS N+I++++  +     +L  L 
Sbjct: 52  PRTKALSLSQNSI-SELRM----PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106

Query: 249 MDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK-ADSFLSQRWLERIILRGNRLTTIEG 307
           + HNR  +I    +    +LR L +++N    L     F +   L  + L   +   ++ 
Sbjct: 107 VSHNRLQNISCCPM---ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163

Query: 308 GAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTH 367
                L    I  L       +     +         +H++    +  +   + +     
Sbjct: 164 LPVAHLHLSCI--LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 368 ITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTK 427
               S  +   +     +     +    T L  TL ++         L       + +  
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEY 280

Query: 428 LDLSHNNLKEL----EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATG 483
           L++ +  + E     E T        L +   +N          +    ++ +  L+ + 
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543
              I         +  +L    N  T+        L  L  L L  N + N    +L   
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM-T 399

Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
            +M  L+     L +     ++        S+  LNL++N LT           K+K L 
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCA-WAESILVLNLSSNMLTGSVFRCLP--PKVKVLD 456

Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
           L  N+    PK+ +  L  LQE+++++NQLK++ D  +  L  L+ + L++N  D
Sbjct: 457 LHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  163 bits (414), Expect = 4e-43
 Identities = 87/470 (18%), Positives = 174/470 (37%), Gaps = 24/470 (5%)

Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
             + L LS N I  +    +     L  LR+ HNR  S+        + L  L +++NR+
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 279 GTLKADSFLSQRWLERIILRGNRLTTI-EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
             +      S   L  + L  N    +     F  L K+  L L   +  +L+       
Sbjct: 113 QNISCCPMAS---LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169

Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNF--LINLES 395
             + +     L+L    +    +++ Q  + T+         L S+ +N +   L +L+ 
Sbjct: 170 HLSCIL----LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL-LTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
           + ++   +N       ++ L+       + L  ++ +     +L    F     + +LN+
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL--FQFFWPRPVEYLNI 283

Query: 455 SRNAHLSSLPVGGFD----PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
                   +    F      LK L +  +         +  +     +    L+ +    
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 511 IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKP 570
           I  +   +  + T+L+ + N   +        L  ++ L L  N L  F      TK   
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK--- 400

Query: 571 NTSSLEELNLNNNELTY-LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS 629
           N SSLE L+++ N L    +  +      +  L L+ N         +     ++ +DL 
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH 458

Query: 630 NNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
           NN++ +I   D  +L  L++LN+ +N + ++ +  F   + LQ I L  N
Sbjct: 459 NNRIMSIPK-DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  160 bits (406), Expect = 5e-42
 Identities = 74/479 (15%), Positives = 157/479 (32%), Gaps = 39/479 (8%)

Query: 241 CDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGN 300
            +    +   +   T +P    + P   + LS++ N I  L+         L  + L  N
Sbjct: 30  NELESMVDYSNRNLTHVPK---DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN 86

Query: 301 RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTF-----------------QGGAFNGLA 343
           R+ +++   F     +  L++ +NRL  ++                         F  L 
Sbjct: 87  RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLT 146

Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLD 403
           K+  L L   +  +L+       H++          +K  +     + N     L    +
Sbjct: 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206

Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVP----TLLHLNLSRNAH 459
           +L      ++  +   L    +   D +   L                TL H+  +    
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266

Query: 460 LSSLPVGGFDPLKKLEVLDLAATGL--KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK 517
           +         P++ L + +L  T    +    Y    L +L    + +       E ++ 
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326

Query: 518 NLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEE 577
               +    LS ++   + +       S   L+ + N  T       +T        L+ 
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST-----LKRLQT 381

Query: 578 LNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPK----ELILGLSYLQEIDLSNNQL 633
           L L  N L         +   + +L+      N                +  ++LS+N L
Sbjct: 382 LILQRNGLKNF-FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440

Query: 634 KTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTF 692
                      P+++ L+L+NN I +I +    +   LQ +N++ N+L+ +P+ +F+  
Sbjct: 441 T--GSVFRCLPPKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRL 496

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 92.6 bits (230), Expect = 8e-20
 Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 16/228 (7%)

Query: 474 LEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV 533
            + L L+   +  +       L  L+ L L+HN +  +   +F    +L YLD+S+N + 
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 534 NLRVGSLYGLPSMKRLDLSFNKLTTFK-GDYFNTKSKPNTSSLEELNLNNNELTYLFPSS 592
           N+   S   + S++ LDLSFN          F      N + L  L L+  +   L    
Sbjct: 114 NI---SCCPMASLRHLDLSFNDFDVLPVCKEFG-----NLTKLTFLGLSAAKFRQLDLLP 165

Query: 593 FTIHSKLKTLKLAFNKF---NYFPKELILGLSYLQEIDLSNNQLKTI---DDYDYGYLPR 646
              H  L  + L    +       + L +  + +  +    N L ++      +     +
Sbjct: 166 VA-HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 647 LRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLY 694
           L  + LN+ N   +       +    ++N++   +E   +     F +
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.1 bits (195), Expect = 1e-15
 Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 11/179 (6%)

Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNL 580
               L LS N+I  LR+  +  L  ++ L LS N++ +     F          LE L++
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL-----FNQDLEYLDV 107

Query: 581 NNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPK-ELILGLSYLQEIDLSNNQLKTIDDY 639
           ++N L  +          L+ L L+FN F+  P  +    L+ L  + LS  + + +D  
Sbjct: 108 SHNRLQNISCCPMA---SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 640 DYGYLP-RLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNY 697
              +L      L+L + +I               +++L F+       ++  +     +
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHLVFHPNSLFSVQVNMSVNALGH 222

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 33/177 (18%), Positives = 64/177 (36%), Gaps = 15/177 (8%)

Query: 152 QILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFST 211
             + M    S       L+F+ N       +  S     LQ L L  N    +   +   
Sbjct: 342 PFIHMVCPPSPS-SFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGL-KNFFKVALM 398

Query: 212 SEFHGLVNLRILDLSDNQIKAIEEGI----LKGCDNLLELRMDHNRFTSIPSVSLNGPRA 267
                  N+  L+  D  + ++            +++L L +  N  T      L  P  
Sbjct: 399 -----TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPK 451

Query: 268 LRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
           +++L +  NRI ++  D     + L+ + +  N+L ++  G F+ L  +  + L  N
Sbjct: 452 VKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  164 bits (417), Expect = 1e-45
 Identities = 60/289 (20%), Positives = 115/289 (39%), Gaps = 21/289 (7%)

Query: 415 LSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL 474
           +     N        ++ ++LK+   +   +   +  L+LS N  LS +      P  KL
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKL 60

Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
           E+L+L++  L        + L  L+ L L +N++ E+         ++  L  +NNNI  
Sbjct: 61  ELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISR 113

Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYL-FPSSF 593
           +      G    K + L+ NK+T  +            S ++ L+L  NE+  + F    
Sbjct: 114 VSCSRGQGK---KNIYLANNKITMLRDLDEG-----CRSRVQYLDLKLNEIDTVNFAELA 165

Query: 594 TIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLN 653
                L+ L L +N       +  +  + L+ +DLS+N+L  +   ++     +  ++L 
Sbjct: 166 ASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLR 222

Query: 654 NNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAPN 702
           NN +  I +     S  L+  +L  N       R F +       +A  
Sbjct: 223 NNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  156 bits (397), Expect = 9e-43
 Identities = 51/312 (16%), Positives = 109/312 (34%), Gaps = 43/312 (13%)

Query: 284 DSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLA 343
           +   +    +   +  + L             +  L+L  N L+++              
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-----SAADLAPFT 58

Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLD 403
           K+ +LNL  N L +                 +    L++LDLN N++  L       +++
Sbjct: 59  KLELLNLSSNVLYETLD-------------LESLSTLRTLDLNNNYVQELLVGP---SIE 102

Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
            L+  +N I+ +S S    +    + L++N +  L          + +L+L  N  + ++
Sbjct: 103 TLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTV 159

Query: 464 PVGGFDP-LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNL 522
                      LE L+L    +  +          LK L L+ N L  +    F++   +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGV 216

Query: 523 TYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN 582
           T++ L NN +V +   +L    +++  DL  N                +  +L +    N
Sbjct: 217 TWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGF--------------HCGTLRDFFSKN 261

Query: 583 NELTYLFPSSFT 594
             +  +   +  
Sbjct: 262 QRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  147 bits (373), Expect = 1e-39
 Identities = 58/342 (16%), Positives = 112/342 (32%), Gaps = 34/342 (9%)

Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
                  +I  ++D+ +K     + +   N+ EL +  N  + I +  L     L +L++
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDT 333
           + N +        LS   L  + L  N +  +          I  L+   N +++++   
Sbjct: 66  SSNVLYETLDLESLST--LRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR 118

Query: 334 FQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL 393
            QG           + L  N++  L                    +++ LDL  N +  +
Sbjct: 119 GQG--------KKNIYLANNKITMLRDLDEGC-----------RSRVQYLDLKLNEIDTV 159

Query: 394 ESTGLEDTLDN---LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLL 450
               L  + D    LN++ N I  +    +    L  LDLS N L  + P  F +   + 
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVVF-AKLKTLDLSSNKLAFMGP-EFQSAAGVT 217

Query: 451 HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
            ++L  N  L  +        + LE  DL   G        F    N +   +A   + +
Sbjct: 218 WISLRNN-KLVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKK 274

Query: 511 IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS 552
           +     +     T          +L       L ++      
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  145 bits (369), Expect = 6e-39
 Identities = 51/338 (15%), Positives = 105/338 (31%), Gaps = 33/338 (9%)

Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMD 250
            +  ++ D+            S      N++ LDLS N +  I    L     L  L + 
Sbjct: 12  YKIEKVTDSSL-----KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 251 HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF 310
            N         L     LR L +  N +  L          +E +    N ++ +     
Sbjct: 67  SNVLYETL--DLESLSTLRTLDLNNNYVQELLVGPS-----IETLHAANNNISRVSCSRG 119

Query: 311 NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITI 370
            G      + L  N++  L             +++  L+L  N +            +  
Sbjct: 120 QGK---KNIYLANNKITMLRD-----LDEGCRSRVQYLDLKLNEI----------DTVNF 161

Query: 371 FSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDL 430
                    L+ L+L  NF+ +++   +   L  L++  N++  +     +   +T + L
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221

Query: 431 SHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQY 490
            +N L  +   A      L H +L  N          F   ++++ +      +K +   
Sbjct: 222 RNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT--VKKLTGQ 278

Query: 491 QFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLS 528
             +E               ++P      L+ L +    
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  145 bits (367), Expect = 1e-38
 Identities = 56/342 (16%), Positives = 117/342 (34%), Gaps = 38/342 (11%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
            +    + ++L++    L     + ++EL L+ N          S ++      L +L+L
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQ-----ISAADLAPFTKLELLNL 65

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
           S N +    +  L+    L  L +++N    +         ++  L  A N I  +    
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSR 118

Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
                  + I L  N++T +        +++  L+L  N ++ +N              +
Sbjct: 119 GQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----AASSDTL 171

Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLEST-GLEDTLDN 404
             LNL YN +  +                  F KLK+LDL+ N L  +         +  
Sbjct: 172 EHLNLQYNFIYDVKGQVV-------------FAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218

Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTA-FTNVPTLLHLNLSRNAHLSSL 463
           +++R+N++  +  +    + L   DL  N          F+    +  +       L+  
Sbjct: 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAH 505
                +      +    A   + +P    D L+ L +    H
Sbjct: 279 N---EEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  166 bits (422), Expect = 3e-43
 Identities = 129/560 (23%), Positives = 209/560 (37%), Gaps = 86/560 (15%)

Query: 169 LDFSGNALR----RLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILD 224
           +D S   L      +S  L S     L+ L L+++    S+      S F    +L  LD
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTG--LESLFLSNSHINGSV------SGFKCSASLTSLD 106

Query: 225 LSDNQIK-AIEEGI-LKGCDNLLELRMDHNRFT-SIPSVSLNGPRALRILSMAYNRI-GT 280
           LS N +   +     L  C  L  L +  N               +L +L ++ N I G 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 281 LKADSFLSQRW--LERIILRGNRLT-TIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
                 LS     L+ + + GN+++  ++    +    +  L++  N  +         G
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFS--------TG 215

Query: 338 --AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLI-NLE 394
                  + +  L++  N+L+        G             +LK L+++ N  +  + 
Sbjct: 216 IPFLGDCSALQHLDISGNKLS--------G---DFSRAISTCTELKLLNISSNQFVGPIP 264

Query: 395 STGLEDTLDNLNVRDNQIT-TLSSS-ALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHL 452
              L+  L  L++ +N+ T  +    +     LT LDLS N+     P  F +   L  L
Sbjct: 265 PLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 453 NLSRNAHLS-SLPVGGFDPLKKLEVLDLAATGLK-SIPQYQFDELLNLKYLCLAHNHLT- 509
            LS N + S  LP+     ++ L+VLDL+       +P+   +   +L  L L+ N+ + 
Sbjct: 324 ALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382

Query: 510 EIPEMMFKNLL-NLTYLDLSNNNIVNLRVG----SLYGLPSMKRLDLSFNKLTTFKG--- 561
            I   + +N    L  L L NN       G    +L     +  L LSFN L+   G   
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGF----TGKIPPTLSNCSELVSLHLSFNYLS---GTIP 435

Query: 562 DYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN-YFPKELILGL 620
                    + S L +L L  N L    P        L+TL L FN      P  L    
Sbjct: 436 SSLG-----SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NC 489

Query: 621 SYLQEIDLSNNQL-----KTIDDYDYGYLPRLRKLNLNNNNID-AISETCFFNSSQLQII 674
           + L  I LSNN+L     K I     G L  L  L L+NN+    I      +   L  +
Sbjct: 490 TNLNWISLSNNRLTGEIPKWI-----GRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWL 543

Query: 675 NLSFNRLE-KLPERLFNTFL 693
           +L+ N     +P  +F    
Sbjct: 544 DLNTNLFNGTIPAAMFKQSG 563

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  151 bits (384), Expect = 2e-38
 Identities = 119/535 (22%), Positives = 184/535 (34%), Gaps = 88/535 (16%)

Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIK-AIEEGILKGCDNLLELRM 249
           L+ L ++ N F   +              L+ LD+S N++       I   C  L  L +
Sbjct: 202 LEFLDVSSNNFSTGI------PFLGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNI 254

Query: 250 DHNRFT-SIPSVSLNGPRALRILSMAYNRI-GTLKADSFLSQRWLERIILRGNRLT-TIE 306
             N+F   IP + L   ++L+ LS+A N+  G +      +   L  + L GN     + 
Sbjct: 255 SSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGT 366
               +  + +  L L  N      S          +  + +L+L +N      S      
Sbjct: 312 PFFGS-CSLLESLALSSNNF----SGELPMDTLLKMRGLKVLDLSFNEF----SGELP-- 360

Query: 367 HITIFSFFQDFQKLKSLDLNGNFLI-----NLESTGLEDTLDNLNVRDNQIT-TLSSSAL 420
                S       L +LDL+ N        NL       TL  L +++N  T  +  +  
Sbjct: 361 ----ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN-TLQELYLQNNGFTGKIPPTLS 415

Query: 421 NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS-SLPVGGFDPLKKLEVLDL 479
           N   L  L LS N L    P++  ++  L  L L  N  L   +P      +K LE L L
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIP-QELMYVKTLETLIL 473

Query: 480 AATGLK-SIPQYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRV 537
               L   IP        NL ++ L++N LT EIP+     L NL  L LSNN+      
Sbjct: 474 DFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNS------ 525

Query: 538 GSLYG--------LPSMKRLDLSFNKLT-----------------TFKGDYFNTKSKPNT 572
               G          S+  LDL+ N                       G  +        
Sbjct: 526 --FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583

Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
                   N  E   +        S      +    +             +  +D+S N 
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643

Query: 633 L-----KTIDDYDYGYLPRLRKLNLNNNNID-AISETCFFNSSQLQIINLSFNRL 681
           L     K I     G +P L  LNL +N+I  +I +    +   L I++LS N+L
Sbjct: 644 LSGYIPKEI-----GSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKL 692

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  120 bits (302), Expect = 3e-28
 Identities = 64/279 (22%), Positives = 108/279 (38%), Gaps = 27/279 (9%)

Query: 425 LTKLDLSHNNLKELE---PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA 481
           +T +DLS   L        ++  ++  L  L LS +    S+   GF     L  LDL+ 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLSR 109

Query: 482 TGLK-SIP-QYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNI---VNL 535
             L   +           LK+L ++ N L           L +L  LDLS N+I     +
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTI 595
                 G   +K L +S NK++                +LE L++++N  +   P     
Sbjct: 170 GWVLSDGCGELKHLAISGNKIS-------GDVDVSRCVNLEFLDVSSNNFSTGIP-FLGD 221

Query: 596 HSKLKTLKLAFNKFN-YFPKELILGLSYLQEIDLSNNQLK-TIDDYDYGYLPRLRKLNLN 653
            S L+ L ++ NK +  F +  I   + L+ +++S+NQ    I       L  L+ L+L 
Sbjct: 222 CSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLA 277

Query: 654 NNNID-AISETCFFNSSQLQIINLSFNRLE-KLPERLFN 690
            N     I +        L  ++LS N     +P    +
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  114 bits (288), Expect = 2e-26
 Identities = 105/502 (20%), Positives = 181/502 (36%), Gaps = 70/502 (13%)

Query: 154 LPMQIFSSSDIPIRRLDFSGNALR-RLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTS 212
           +P     S    ++ L  + N     + D L      TL  L L+ N F  ++ P     
Sbjct: 263 IPPLPLKS----LQYLSLAENKFTGEIPDFLSGACD-TLTGLDLSGNHFYGAVPP----- 312

Query: 213 EFHGLVNLRILDLSDNQIK-AIEEGILKGCDNLLELRMDHNRFT-SIPSVSLNGPRALRI 270
            F     L  L LS N     +    L     L  L +  N F+  +P    N   +L  
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372

Query: 271 LSMAYNRI-GTLKAD-SFLSQRWLERIILRGNRLT-TIEGGAFNGLAKIHILNLGYNRLN 327
           L ++ N   G +  +     +  L+ + L+ N  T  I     N  +++  L+L +N L+
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLS 431

Query: 328 -KLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLN 386
             + S          L+K+  L L  N          +G    I       + L++L L+
Sbjct: 432 GTIPSS------LGSLSKLRDLKLWLNM--------LEGE---IPQELMYVKTLETLILD 474

Query: 387 GNFL--------INLESTGLEDTLDNLNVRDNQIT-TLSSSALNYKLLTKLDLSHNNLKE 437
            N L         N  +      L+ +++ +N++T  +       + L  L LS+N+   
Sbjct: 475 FNDLTGEIPSGLSNCTN------LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 438 LEPTAFTNVPTLLHLNLSRNAHLS-SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
             P    +  +L+ L+L+ N   + ++P   F    K+    +A      I      +  
Sbjct: 529 NIPAELGDCRSLIWLDLNTN-LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587

Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
           +             I       L      ++++         +     SM  LD+S+N L
Sbjct: 588 HGA---GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 557 TTFKGDYFNTKSKPNT----SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN-Y 611
           +   G        P        L  LNL +N+++   P        L  L L+ NK +  
Sbjct: 645 S---GYI------PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695

Query: 612 FPKELILGLSYLQEIDLSNNQL 633
            P+ +   L+ L EIDLSNN L
Sbjct: 696 IPQAMS-ALTMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 2e-09
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 571 NTSSLEELNLNNNELTYLF---PSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID 627
               +  ++L++  L   F    SS    + L++L L+ +  N          + L  +D
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106

Query: 628 LSNNQLK-TI-DDYDYGYLPRLRKLNLNNNNID-AISETCFFNSSQLQIINLSFNRLE 682
           LS N L   +      G    L+ LN+++N +D     +     + L++++LS N + 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  158 bits (401), Expect = 4e-42
 Identities = 80/439 (18%), Positives = 159/439 (36%), Gaps = 78/439 (17%)

Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
           +L  L  S N +  + E       +L  L +D+N   ++  +    P  L  L ++ N++
Sbjct: 92  HLESLVASCNSLTELPELP----QSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQL 143

Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
             L      S   L+ I +  N L  +     +    +  +  G N+L +L         
Sbjct: 144 EKLPELQNSSF--LKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQLEELPE------- 190

Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGL 398
              L  +  +    N L KL                     L+S+    N L  L     
Sbjct: 191 LQNLPFLTAIYADNNSLKKL---------------PDLPLSLESIVAGNNILEELPELQN 235

Query: 399 EDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA 458
              L  +   +N + TL     +   L  L++  N L +L P    +   L  L++S N 
Sbjct: 236 LPFLTTIYADNNLLKTLPDLPPS---LEALNVRDNYLTDL-PELPQS---LTFLDVSEN- 287

Query: 459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKN 518
             S L     +    L  L+ ++  ++S+     D   +L+ L +++N L E+P      
Sbjct: 288 IFSGLS----ELPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELPA----L 335

Query: 519 LLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEEL 578
              L  L  S N++  +         ++K+L + +N L  F              S+E+L
Sbjct: 336 PPRLERLIASFNHLAEVP----ELPQNLKQLHVEYNPLREF---------PDIPESVEDL 382

Query: 579 NLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD 638
            +N++ L  +          LK L +  N    FP         ++++ +++ ++    +
Sbjct: 383 RMNSH-LAEVPELP----QNLKQLHVETNPLREFPDI----PESVEDLRMNSERVVDPYE 433

Query: 639 YDYGYLPRLRKLNLNNNNI 657
           + +    +L      +++ 
Sbjct: 434 FAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  154 bits (391), Expect = 8e-41
 Identities = 95/451 (21%), Positives = 162/451 (35%), Gaps = 81/451 (17%)

Query: 240 GCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRG 299
               L E     +  T +P       ++      A++            QR +    LR 
Sbjct: 9   SNTFLQEPLRHSSNLTEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 300 NRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLN 359
                          + H L L    L+ L               +  L    N L +L 
Sbjct: 68  CLDR-----------QAHELELNNLGLSSLPEL---------PPHLESLVASCNSLTELP 107

Query: 360 SDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA 419
                          +  Q LKSL ++ N L  L  + L   L+ L V +NQ+  L    
Sbjct: 108 ---------------ELPQSLKSLLVDNNNLKAL--SDLPPLLEYLGVSNNQLEKLPELQ 150

Query: 420 LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
            N   L  +D+ +N+LK+L P    +   L  +    N  L  LP      L  L  +  
Sbjct: 151 -NSSFLKIIDVDNNSLKKL-PDLPPS---LEFIAAGNN-QLEELPE--LQNLPFLTAIYA 202

Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
               LK +P    D  L+L+ +   +N L E+PE   +NL  LT +   NN +  L    
Sbjct: 203 DNNSLKKLP----DLPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDL- 255

Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKL 599
               PS++ L++  N LT         +   + + L+      + L+ L P+       L
Sbjct: 256 ---PPSLEALNVRDNYLTDL------PELPQSLTFLDVSENIFSGLSELPPN-------L 299

Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDA 659
             L  + N+              L+E+++SNN+L  +        PRL +L  + N++  
Sbjct: 300 YYLNASSNEIRSLCDLP----PSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAE 351

Query: 660 ISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
           + E        L+ +++ +N L + P+   +
Sbjct: 352 VPELP----QNLKQLHVEYNPLREFPDIPES 378

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  153 bits (389), Expect = 2e-40
 Identities = 91/528 (17%), Positives = 185/528 (35%), Gaps = 92/528 (17%)

Query: 162 SDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLV--- 218
           S+  ++      + L  +  +    +  +  E   A + +  +  P         +    
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAE--NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 219 -----NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
                    L+L++  + ++ E       +L  L    N  T +P       ++L + + 
Sbjct: 67  DCLDRQAHELELNNLGLSSLPELP----PHLESLVASCNSLTELPE-LPQSLKSLLVDNN 121

Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDT 333
               +  L          LE + +  N+L  +        + + I+++  N L KL    
Sbjct: 122 NLKALSDLPPL-------LEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLKKL---- 168

Query: 334 FQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL 393
                 +    +  +  G N+L +L                Q+   L ++  + N L  L
Sbjct: 169 -----PDLPPSLEFIAAGNNQLEELPE-------------LQNLPFLTAIYADNNSLKKL 210

Query: 394 ESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
               L  +L+++   +N +  L     N   LT +   +N LK L        P+L  LN
Sbjct: 211 PDLPL--SLESIVAGNNILEELPELQ-NLPFLTTIYADNNLLKTLPDL----PPSLEALN 263

Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE 513
           +  N +L+ LP      L  L+V +   +GL  +P        NL YL  + N +  + +
Sbjct: 264 VRDN-YLTDLP-ELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIRSLCD 314

Query: 514 MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTS 573
                  +L  L++SNN ++ L        P ++RL  SFN L                 
Sbjct: 315 ----LPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVP---------ELPQ 357

Query: 574 SLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL 633
           +L++L++  N L    P        ++ L++  +     P+        L+++ +  N L
Sbjct: 358 NLKQLHVEYNPLREF-PDIP---ESVEDLRM-NSHLAEVPELP----QNLKQLHVETNPL 408

Query: 634 KTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRL 681
           +   D        +  L +N+  +    E     + +L+      +  
Sbjct: 409 REFPDI----PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  147 bits (374), Expect = 2e-38
 Identities = 90/446 (20%), Positives = 166/446 (37%), Gaps = 84/446 (18%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
           +  L  S N+L  L +   S     L+ L + +N    +L  +           L  L +
Sbjct: 93  LESLVASCNSLTELPELPQS-----LKSLLVDNN----NLKALSDLPP-----LLEYLGV 138

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
           S+NQ++ + E  L+    L  + +D+N    +P    + P +L  ++   N++  L    
Sbjct: 139 SNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLEELPELQ 192

Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
            L    L  I    N L  +     +    +  +  G N L +L            L  +
Sbjct: 193 NLPF--LTAIYADNNSLKKL----PDLPLSLESIVAGNNILEELPE-------LQNLPFL 239

Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNL 405
             +    N L  L                     L++L++  N+L +L    L  +L  L
Sbjct: 240 TTIYADNNLLKTLPDL---------------PPSLEALNVRDNYLTDLPE--LPQSLTFL 282

Query: 406 NVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV 465
           +V +N  + LS    N   L  L+ S N ++ L        P+L  LN+S N  L  LP 
Sbjct: 283 DVSENIFSGLSELPPN---LYYLNASSNEIRSL----CDLPPSLEELNVSNN-KLIELPA 334

Query: 466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525
                  +LE L  +   L  +P    +   NLK L + +N L E P++      ++  L
Sbjct: 335 L----PPRLERLIASFNHLAEVP----ELPQNLKQLHVEYNPLREFPDIPE----SVEDL 382

Query: 526 DLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNEL 585
            ++++      +       ++K+L +  N L  F              S+E+L +N+  +
Sbjct: 383 RMNSHLAEVPEL-----PQNLKQLHVETNPLREFP---------DIPESVEDLRMNSERV 428

Query: 586 TYLFPSSFTIHSKLKTLKLAFNKFNY 611
              +  +     KL+      +  ++
Sbjct: 429 VDPYEFAHETTDKLEDDVFEHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  145 bits (369), Expect = 8e-38
 Identities = 84/406 (20%), Positives = 154/406 (37%), Gaps = 57/406 (14%)

Query: 287 LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIH 346
           +S  +L+  +   + LT +   A N +         ++   +        G    +A   
Sbjct: 8   VSNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGN--GEQREMAVSR 64

Query: 347 ILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL--ESTGLEDTLDN 404
           + +    + ++L         ++  S  +    L+SL  + N L  L      L+ +L  
Sbjct: 65  LRDCLDRQAHELE---LNNLGLS--SLPELPPHLESLVASCNSLTELPELPQSLK-SLLV 118

Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLP 464
            N     ++ L         L  L +S+N L++L      N   L  +++  N  L  LP
Sbjct: 119 DNNNLKALSDLPPL------LEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNN-SLKKLP 169

Query: 465 VGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTY 524
                    LE +      L+ +P+     L  L  +   +N L ++P+      L+L  
Sbjct: 170 DL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPD----LPLSLES 219

Query: 525 LDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNE 584
           +   NN +  L    L  LP +  +    N L T               SLE LN+ +N 
Sbjct: 220 IVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLP---------DLPPSLEALNVRDNY 268

Query: 585 LTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYL 644
           LT L P        L  L ++ N F+   +        L  ++ S+N+++++ D      
Sbjct: 269 LTDL-PELP---QSLTFLDVSENIFSGLSELP----PNLYYLNASSNEIRSLCDL----P 316

Query: 645 PRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
           P L +LN++NN +  +         +L+ +  SFN L ++PE   N
Sbjct: 317 PSLEELNVSNNKLIELPALP----PRLERLIASFNHLAEVPELPQN 358

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  126 bits (319), Expect = 3e-31
 Identities = 62/301 (20%), Positives = 112/301 (37%), Gaps = 44/301 (14%)

Query: 390 LINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTL 449
            IN  +      L       + +T +   A N K  T+   + +  +   P        +
Sbjct: 2   FINPRNVSN-TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 450 LHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT 509
               L                 ++   L+L   GL S+P    +   +L+ L  + N LT
Sbjct: 61  AVSRLRDC------------LDRQAHELELNNLGLSSLP----ELPPHLESLVASCNSLT 104

Query: 510 EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSK 569
           E+PE + ++L +L   + +   + +L        P ++ L +S N+L             
Sbjct: 105 ELPE-LPQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKL-------PEL 149

Query: 570 PNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS 629
            N+S L+ ++++NN L  L P        L+ +    N+    P+  +  L +L  I   
Sbjct: 150 QNSSFLKIIDVDNNSLKKL-PDLPP---SLEFIAAGNNQLEELPE--LQNLPFLTAIYAD 203

Query: 630 NNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
           NN LK + D        L  +   NN ++ + E    N   L  I    N L+ LP+   
Sbjct: 204 NNSLKKLPD----LPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLPP 257

Query: 690 N 690
           +
Sbjct: 258 S 258

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  152 bits (387), Expect = 3e-40
 Identities = 74/424 (17%), Positives = 130/424 (30%), Gaps = 60/424 (14%)

Query: 267 ALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL 326
                  A   +      S      L  +    + +T + G     L  +  L    N +
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNI 76

Query: 327 NKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLN 386
             L+         +    +  L    N+L  L+                   KL  L+ +
Sbjct: 77  TTLD--------LSQNTNLTYLACDSNKLTNLD--------------VTPLTKLTYLNCD 114

Query: 387 GNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNV 446
            N L  L+ +     L  LN   N +T +  S  +   LT+LD   N    +     T  
Sbjct: 115 TNKLTKLDVSQNPL-LTYLNCARNTLTEIDVS--HNTQLTELDCHLNKK--ITKLDVTPQ 169

Query: 447 PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
             L  L+ S N  ++ L V      K L  L+     +  +     ++ + L +L  + N
Sbjct: 170 TQLTTLDCSFN-KITELDVSQ---NKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSN 222

Query: 507 HLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNT 566
            LTEI       L  LTY D S N +  L    +  L  +  L      L          
Sbjct: 223 KLTEID---VTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLLEI------- 269

Query: 567 KSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEI 626
               + + L            +     T +++L  L              +     L  +
Sbjct: 270 -DLTHNTQLIYFQAEGC--RKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYL 323

Query: 627 DLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686
            L+N +L  +D     +  +L+ L+  N +I   S      +  L     +  +   +P+
Sbjct: 324 YLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSSVGKIPA--LNNNFEAEGQTITMPK 378

Query: 687 RLFN 690
               
Sbjct: 379 ETLT 382

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  152 bits (386), Expect = 5e-40
 Identities = 91/461 (19%), Positives = 149/461 (32%), Gaps = 65/461 (14%)

Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
              L  L  LD  ++ I  +    ++    L +L    N  T++    L+    L  L+ 
Sbjct: 38  EEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLD---LSQNTNLTYLAC 92

Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDT 333
             N++  L          L  +    N+LT ++    +    +  LN   N L +++   
Sbjct: 93  DSNKLTNLDVTPLTK---LTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID--- 143

Query: 334 FQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL 393
                 +   ++  L+   N                         +L +LD + N +  L
Sbjct: 144 -----VSHNTQLTELDCHLN-------------KKITKLDVTPQTQLTTLDCSFNKITEL 185

Query: 394 ESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
           + +  +  L+ LN   N IT L  +      LT LD S N L E++    T +  L + +
Sbjct: 186 DVSQNK-LLNRLNCDTNNITKLDLNQN--IQLTFLDCSSNKLTEID---VTPLTQLTYFD 239

Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE 513
            S N  L+ L V       KL  L    T L  I          L Y         +I E
Sbjct: 240 CSVN-PLTELDVSTL---SKLTTLHCIQTDLLEID---LTHNTQLIYFQA--EGCRKIKE 290

Query: 514 MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTS 573
           +   +   L  LD     I  L    L   P +  L L+  +LT             + +
Sbjct: 291 LDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTELDVS--------HNT 339

Query: 574 SLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLS-----YLQEIDL 628
            L+ L+  N  +     SS      L     A  +    PKE +   S         +D 
Sbjct: 340 KLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQ 397

Query: 629 SNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSS 669
             N +         Y      +   N + D  + T  F S 
Sbjct: 398 FGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSE 438

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 48/216 (22%), Positives = 77/216 (35%), Gaps = 24/216 (11%)

Query: 470 PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529
           P         AA  +++      ++L  L  L   ++ +T++     + L  LT L  ++
Sbjct: 16  PDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTS 73

Query: 530 NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLF 589
           NNI  L    L    ++  L    NKLT               + L  LN + N+LT L 
Sbjct: 74  NNITTL---DLSQNTNLTYLACDSNKLTNL--------DVTPLTKLTYLNCDTNKLTKLD 122

Query: 590 PSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
            S       L  L  A N         +   + L E+D   N+  T    D     +L  
Sbjct: 123 VSQNP---LLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174

Query: 650 LNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLP 685
           L+ + N I  +       +  L  +N   N + KL 
Sbjct: 175 LDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD 207

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.7 bits (197), Expect = 7e-16
 Identities = 46/288 (15%), Positives = 77/288 (26%), Gaps = 45/288 (15%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
           +  LD   N      D         L  L  + N          +  +      L  L+ 
Sbjct: 150 LTELDCHLNKKITKLDVTPQTQ---LTTLDCSFNKI--------TELDVSQNKLLNRLNC 198

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
             N I  ++   L     L  L    N+ T I    +     L     + N +  L   +
Sbjct: 199 DTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVST 252

Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
                 L  +      L  I+      L     +        K+              ++
Sbjct: 253 LSK---LTTLHCIQTDLLEIDLTHNTQL-----IYFQAEGCRKIKE-----LDVTHNTQL 299

Query: 346 HILNLGYNRLNKLNSDTFQ--------GTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
           ++L+     + +L+              T +T         KLKSL      + +  S G
Sbjct: 300 YLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDV-SHNTKLKSLSCVNAHIQDFSSVG 358

Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLT------KLDLSHNNLKELE 439
               L+N    + Q  T+    L    LT       LD   N +    
Sbjct: 359 KIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEP 406

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  142 bits (361), Expect = 2e-38
 Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 36/239 (15%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
              LDLS N L+ L   +F + P L  L+LSR   + ++  G +  L             
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLS------------ 76

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
                       +L  L L  N +  +    F  L +L  L     N+ +L    +  L 
Sbjct: 77  ------------HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 545 SMKRLDLSFNKLTTFKG-DYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLK--- 600
           ++K L+++ N + +FK  +YF+     N ++LE L+L++N++  ++ +   +  ++    
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFS-----NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 601 -TLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
            +L L+ N  N+        +  L+E+ L  NQLK++ D  +  L  L+K+ L+ N  D
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  132 bits (335), Expect = 9e-35
 Identities = 63/236 (26%), Positives = 99/236 (41%), Gaps = 29/236 (12%)

Query: 252 NRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
             F  IP    N P + + L +++N +  L + SF S   L+ + L    + TIE GA+ 
Sbjct: 17  LNFYKIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73

Query: 312 GLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIF 371
            L+ +  L L  N +  L       GAF+GL+ +  L      L  L +           
Sbjct: 74  SLSHLSTLILTGNPIQSL-----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLK---- 124

Query: 372 SFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNL---NVRDNQITTLSSSALNY-----K 423
                   LK L++  N + + +       L NL   ++  N+I ++  + L        
Sbjct: 125 -------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 424 LLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
           L   LDLS N +  ++P AF  +  L  L L  N  L S+P G FD L  L+ + L
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTN-QLKSVPDGIFDRLTSLQKIWL 231

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  125 bits (315), Expect = 4e-32
 Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 62/268 (23%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
           + + L L+ N     L        F     L++LDLS  +I+ IE+G  +   +L  L +
Sbjct: 29  STKNLDLSFNPLR-HLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
             N   S+   + +G  +L+ L                              L ++E   
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLV------------------------AVETNLASLENFP 119

Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHIT 369
              L  +  LN+ +N +            F+ L  +  L+L  N++  +     +     
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLP----EYFSNLTNLEHLDLSSNKIQSIYCTDLRV---- 171

Query: 370 IFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLD 429
                               L  +    L      L++  N +  +   A     L +L 
Sbjct: 172 --------------------LHQMPLLNLS-----LDLSLNPMNFIQPGAFKEIRLKELA 206

Query: 430 LSHNNLKELEPTAFTNVPTLLHLNLSRN 457
           L  N LK +    F  + +L  + L  N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  123 bits (310), Expect = 2e-31
 Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 14/213 (6%)

Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
               IP        + K L L+ N L  +    F +   L  LDLS   I  +  G+   
Sbjct: 18  NFYKIPDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74

Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL 602
           L  +  L L+ N + +     F+       SSL++L      L  L          LK L
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFS-----GLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 603 KLAFNKFNYFPK-ELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLR----KLNLNNNNI 657
            +A N    F   E    L+ L+ +DLS+N++++I   D   L ++      L+L+ N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 658 DAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
           + I     F   +L+ + L  N+L+ +P+ +F+
Sbjct: 190 NFIQPGA-FKEIRLKELALDTNQLKSVPDGIFD 221

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  144 bits (364), Expect = 4e-38
 Identities = 50/258 (19%), Positives = 90/258 (34%), Gaps = 34/258 (13%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA-ATG 483
             +L      L+ ++  AF+    L  + +S+N  L  +    F  L KL  + +  A  
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLS-NNNIVNLRVGSLYG 542
           L  I    F  L NL+YL +++  +  +P++   + L    LD+  N NI  +   S  G
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL 602
           L                            +     L LN N +  +  S+F      +  
Sbjct: 152 L----------------------------SFESVILWLNKNGIQEIHNSAFNGTQLDELN 183

Query: 603 KLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662
               N     P ++  G S    +D+S  ++ ++  Y    L +LR  +  N        
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL----KKL 239

Query: 663 TCFFNSSQLQIINLSFNR 680
                   L   +L++  
Sbjct: 240 PTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  135 bits (342), Expect = 4e-35
 Identities = 61/284 (21%), Positives = 104/284 (36%), Gaps = 47/284 (16%)

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNR-LTTIEGG 308
             ++ T IPS   + PR    L     ++  ++  +F     LE+I +  N  L  IE  
Sbjct: 17  QESKVTEIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73

Query: 309 AFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHI 368
            F+ L K+H + +   + N L        AF  L  +  L +    +  L       +  
Sbjct: 74  VFSNLPKLHEIRI--EKANNLLY--INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL- 128

Query: 369 TIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNY--KLLT 426
                     +   LD+  N                       I T+  ++         
Sbjct: 129 ----------QKVLLDIQDN---------------------INIHTIERNSFVGLSFESV 157

Query: 427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKS 486
            L L+ N ++E+  +AF N   L  LNLS N +L  LP   F       +LD++ T + S
Sbjct: 158 ILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216

Query: 487 IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
           +P Y  + L  L+       +L ++P    + L+ L    L+  
Sbjct: 217 LPSYGLENLKKLRARST--YNLKKLP--TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  128 bits (323), Expect = 1e-32
 Identities = 44/269 (16%), Positives = 90/269 (33%), Gaps = 46/269 (17%)

Query: 290 RWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILN 349
           R    +     +L  I+ GAF+G   +  + +  N +     +  +   F+ L K+H + 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV----LEVIEADVFSNLPKLHEIR 85

Query: 350 L-GYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVR 408
           +   N L  +N + FQ               L+ L ++                      
Sbjct: 86  IEKANNLLYINPEAFQNLP-----------NLQYLLISNT-------------------- 114

Query: 409 DNQITTLSSSALNYKL-LTKLDLSHNN-LKELEPTAFTNVPTLLH-LNLSRNAHLSSLPV 465
              I  L      + L    LD+  N  +  +E  +F  +      L L++N  +  +  
Sbjct: 115 --GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHN 171

Query: 466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525
             F+  +  E+       L+ +P   F        L ++   +  +P    +NL  L   
Sbjct: 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231

Query: 526 DLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
              N      ++ +L  L ++    L++ 
Sbjct: 232 STYNLK----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  120 bits (303), Expect = 5e-30
 Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 12/220 (5%)

Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV- 533
            V     + +  IP    D   N   L      L  I +  F    +L  +++S N+++ 
Sbjct: 12  RVFLCQESKVTEIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 534 NLRVGSLYGLPSMKRLDLS-FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSS 592
            +       LP +  + +   N L     + F      N  +L+ L ++N  + +L    
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ-----NLPNLQYLLISNTGIKHLPDVH 123

Query: 593 FTIHSKLKTLKLAFN-KFNYFPKELILGLSY-LQEIDLSNNQLKTIDDYDYGYLPRLRKL 650
                +   L +  N   +   +   +GLS+    + L+ N ++ I +  +         
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183

Query: 651 NLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
             +NNN++ +    F  +S   I+++S  R+  LP     
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  119 bits (301), Expect = 1e-29
 Identities = 48/242 (19%), Positives = 85/242 (35%), Gaps = 24/242 (9%)

Query: 162 SDIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
           SD+P     L F    LR +    FS   D L+++ ++ N   + +        F  L  
Sbjct: 26  SDLPRNAIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVIEA----DVFSNLPK 80

Query: 220 LRILDLSD-NQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN-R 277
           L  + +   N +  I     +   NL  L + +     +P V         +L +  N  
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 278 IGTLKADSFLS-QRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 336
           I T++ +SF+        + L  N +  I   AFNG     +     N L +L +D    
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND---- 196

Query: 337 GAFNGLAKIHILNLGYNRLNKLNSDTFQGT---------HITIFSFFQDFQKLKSLDLNG 387
             F+G +   IL++   R++ L S   +           ++      +    L    L  
Sbjct: 197 -VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255

Query: 388 NF 389
             
Sbjct: 256 PS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  115 bits (290), Expect = 3e-28
 Identities = 55/291 (18%), Positives = 96/291 (32%), Gaps = 68/291 (23%)

Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
           N   L     +++ I++G   G  +L ++ +  N                          
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE---------------------- 68

Query: 279 GTLKADSFLSQRWLERI-ILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
             ++AD F +   L  I I + N L  I   AF  L  +  L +    +           
Sbjct: 69  -VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-----HLPDV 122

Query: 338 AFNGLAKIHILNLGYN-RLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLEST 396
                 +  +L++  N  ++ +  ++F                                 
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFV-------------------------------- 150

Query: 397 GLEDTLDNLNVRDNQITTLSSSALNY-KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
           GL      L +  N I  + +SA N  +L       +NNL+EL    F      + L++S
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
           R   + SLP  G + LKKL         LK +P    ++L+ L    L + 
Sbjct: 211 RT-RIHSLPSYGLENLKKLRARST--YNLKKLP--TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  114 bits (288), Expect = 6e-28
 Identities = 58/298 (19%), Positives = 99/298 (33%), Gaps = 56/298 (18%)

Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
           R      + +  +   L         ELR            +     F G  +L  +++S
Sbjct: 12  RVFLCQESKVTEIPSDLPR----NAIELRFVLTKL-----RVIQKGAFSGFGDLEKIEIS 62

Query: 227 DNQI-KAIEEGILKGCDNLLELRMDH-NRFTSIPSVSLNGPRALRILSMAYNRIGTLKAD 284
            N + + IE  +      L E+R++  N    I   +      L+ L ++   I  L   
Sbjct: 63  QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122

Query: 285 SFLSQRWLERIILRGN-RLTTIEGGAFNGL-AKIHILNLGYNRLNKLNSDTFQGGAFNGL 342
             +       + ++ N  + TIE  +F GL  +  IL L  N + ++        AFNG 
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-----HNSAFNGT 177

Query: 343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTL 402
               +     N L +L +D F G                                     
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHG------------------------ASGPV-------- 205

Query: 403 DNLNVRDNQITTLSSSALNYKLLTKLD-LSHNNLKELEPTAFTNVPTLLHLNLSRNAH 459
             L++   +I +L S  L    L KL   S  NLK+L       +  L+  +L+  +H
Sbjct: 206 -ILDISRTRIHSLPSYGLEN--LKKLRARSTYNLKKLPT--LEKLVALMEASLTYPSH 258

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  143 bits (363), Expect = 4e-36
 Identities = 75/359 (20%), Positives = 123/359 (34%), Gaps = 60/359 (16%)

Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNL 405
            +LN+G + L  L                     + +L +  N L +L +      L  L
Sbjct: 43  AVLNVGESGLTTLPDC--------------LPAHITTLVIPDNNLTSLPALP--PELRTL 86

Query: 406 NVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV 465
            V  NQ+T+L         L+       +L  L P+       L  L +  N  L+SLPV
Sbjct: 87  EVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL-PSG------LCKLWIFGN-QLTSLPV 138

Query: 466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525
                   L+ L ++   L S+P         L  L   +N LT +P         L  L
Sbjct: 139 L----PPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTSLPM----LPSGLQEL 186

Query: 526 DLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT-SSLEELNLNNNE 584
            +S+N + +L          + +L    N+LT+           P   S L+EL ++ N 
Sbjct: 187 SVSDNQLASLPTL----PSELYKLWAYNNRLTSL----------PALPSGLKELIVSGNR 232

Query: 585 LTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYL 644
           LT L        S+LK L ++ N+    P       S L  + +  NQL  + +    +L
Sbjct: 233 LTSLPVL----PSELKELMVSGNRLTSLPMLP----SGLLSLSVYRNQLTRLPE-SLIHL 283

Query: 645 PRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAPNL 703
                +NL  N +   +       +     +    R +             +   A  L
Sbjct: 284 SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  133 bits (337), Expect = 6e-33
 Identities = 79/392 (20%), Positives = 128/392 (32%), Gaps = 70/392 (17%)

Query: 298 RGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNK 357
           R   +  +     NG     +LN+G + L  L               I  L +  N L  
Sbjct: 27  RAAVVQKMRACLNNGN---AVLNVGESGLTTLPDCLPA--------HITTLVIPDNNLTS 75

Query: 358 LNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL-ESTGLEDTLDNLNVRDNQITTLS 416
           L +                  +L++L+++GN L +L         L   +     +  L 
Sbjct: 76  LPAL---------------PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP 120

Query: 417 SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEV 476
           S       L KL +  N L  L P        L  L++S N  L+SLP        +L  
Sbjct: 121 SG------LCKLWIFGNQLTSL-PVLPPG---LQELSVSDN-QLASLPAL----PSELCK 165

Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR 536
           L      L S+P         L+ L ++ N L  +P         L  L   NN + +L 
Sbjct: 166 LWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP 217

Query: 537 VGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIH 596
                    +K L +S N+LT+              S L+EL ++ N LT L P   +  
Sbjct: 218 AL----PSGLKELIVSGNRLTSLP---------VLPSELKELMVSGNRLTSL-PMLPS-- 261

Query: 597 SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNN 656
             L +L +  N+    P+  ++ LS    ++L  N L          +        +   
Sbjct: 262 -GLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALREITSA--PGYSGPI 317

Query: 657 IDAISETCFFNSSQLQIINLSFNRLEKLPERL 688
           I               +   + + L    E  
Sbjct: 318 IRFDMAGASAPRETRALHLAAADWLVPAREGE 349

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  131 bits (330), Expect = 5e-32
 Identities = 74/392 (18%), Positives = 133/392 (33%), Gaps = 68/392 (17%)

Query: 241 CDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGN 300
            +    L +  +  T++P      P  +  L +  N + +L   +   +  L  + + GN
Sbjct: 39  NNGNAVLNVGESGLTTLPD---CLPAHITTLVIPDNNLTSL--PALPPE--LRTLEVSGN 91

Query: 301 RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNS 360
           +LT++      GL ++ I +     L  L             + +  L +  N+L  L  
Sbjct: 92  QLTSL-PVLPPGLLELSIFSNPLTHLPAL------------PSGLCKLWIFGNQLTSLPV 138

Query: 361 DTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL 420
                              L+ L ++ N L +L    L   L  L   +NQ+T+L     
Sbjct: 139 ---------------LPPGLQELSVSDNQLASL--PALPSELCKLWAYNNQLTSLPMLPS 181

Query: 421 NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA 480
               L +L +S N L  L PT  +    L  L    N  L+SLP         L+ L ++
Sbjct: 182 G---LQELSVSDNQLASL-PTLPSE---LYKLWAYNN-RLTSLPAL----PSGLKELIVS 229

Query: 481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL 540
              L S+P         LK L ++ N LT +P         L  L +  N +  L   SL
Sbjct: 230 GNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPE-SL 280

Query: 541 YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLK 600
             L S   ++L  N L+          +      +      +  +     +  +   + +
Sbjct: 281 IHLSSETTVNLEGNPLSER--------TLQALREITSAPGYSGPIIRFDMAGASAPRETR 332

Query: 601 TLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
            L LA    ++         +      +   +
Sbjct: 333 ALHLAAA--DWLVPAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  116 bits (293), Expect = 2e-27
 Identities = 73/419 (17%), Positives = 134/419 (31%), Gaps = 100/419 (23%)

Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
             L+   + L  L D L +                                 ++  L + 
Sbjct: 43  AVLNVGESGLTTLPDCLPA---------------------------------HITTLVIP 69

Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSF 286
           DN + ++          L  L +  N+ TS+P     G   L I S     +  L     
Sbjct: 70  DNNLTSLPALP----PELRTLEVSGNQLTSLPV-LPPGLLELSIFSNPLTHLPAL----- 119

Query: 287 LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIH 346
            S   L ++ + GN+LT++          +  L++  N+L  L             +++ 
Sbjct: 120 PSG--LCKLWIFGNQLTSLP----VLPPGLQELSVSDNQLASLP---------ALPSELC 164

Query: 347 ILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL-ESTGLEDTLDNL 405
            L    N+L  L                     L+ L ++ N L +L         L  L
Sbjct: 165 KLWAYNNQLTSLPM---------------LPSGLQELSVSDNQLASLPTLPS---ELYKL 206

Query: 406 NVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV 465
              +N++T+L +       L +L +S N L  L P   +    L  L +S N  L+SLP+
Sbjct: 207 WAYNNRLTSLPALPSG---LKELIVSGNRLTSL-PVLPSE---LKELMVSGN-RLTSLPM 258

Query: 466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525
                   L  L +    L  +P+     L +   + L  N L+E      +    +T  
Sbjct: 259 L----PSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSERTLQALR---EITSA 310

Query: 526 DLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNE 584
              +  I+   +         + L L+         D+     +   +  +  ++   E
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHLAAA-------DWLVPAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (251), Expect = 3e-22
 Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 32/194 (16%)

Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
               L +  + LT +P+ +     ++T L + +NN+ +L        P ++ L++S N+L
Sbjct: 41  GNAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLPA----LPPELRTLEVSGNQL 93

Query: 557 TTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKEL 616
           T+           P    L   +     L  L          L  L +  N+    P   
Sbjct: 94  TSL------PVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTSLPVL- 139

Query: 617 ILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINL 676
                 LQE+ +S+NQL ++          L KL   NN + ++        S LQ +++
Sbjct: 140 ---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLPMLP----SGLQELSV 188

Query: 677 SFNRLEKLPERLFN 690
           S N+L  LP     
Sbjct: 189 SDNQLASLPTLPSE 202

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.0 bits (244), Expect = 2e-21
 Identities = 68/315 (21%), Positives = 119/315 (37%), Gaps = 58/315 (18%)

Query: 154 LPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSE 213
           LP  + +     I  L    N L  L           L+ L ++ N    SL        
Sbjct: 55  LPDCLPAH----ITTLVIPDNNLTSLPALPPE-----LRTLEVSGNQL-TSLPV-----L 99

Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
             GL+ L I       + A+          L +L +  N+ TS+P      P  L+ LS+
Sbjct: 100 PPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLP----VLPPGLQELSV 148

Query: 274 AYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDT 333
           + N++ +L   +  S+  L ++    N+LT++        + +  L++  N+L  L    
Sbjct: 149 SDNQLASL--PALPSE--LCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASL---- 196

Query: 334 FQGGAFNGLAKIHILNLGYNRLNKLNSD-------TFQGTHITIFSFFQDFQKLKSLDLN 386
                    ++++ L    NRL  L +           G  +T  S      +LK L ++
Sbjct: 197 -----PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT--SLPVLPSELKELMVS 249

Query: 387 GNFLINL--ESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFT 444
           GN L +L    +GL     +L+V  NQ+T L  S ++    T ++L  N L E    A  
Sbjct: 250 GNRLTSLPMLPSGLL----SLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305

Query: 445 NVPTLLHLNLSRNAH 459
            + +    +      
Sbjct: 306 EITSAPGYSGPIIRF 320

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  133 bits (338), Expect = 2e-35
 Identities = 66/183 (36%), Positives = 90/183 (49%), Gaps = 6/183 (3%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
             KLDL  N L  L   AF  +  L  L L+ N  L +LP G F  LK LE L +    L
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
           +++P   FD+L+NL  L L  N L  +P  +F +L  LTYL L  N + +L  G    L 
Sbjct: 98  QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157

Query: 545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKL 604
           S+K L L  N+L       F+       + L+ L L+NN+L  +   +F    KLK L+L
Sbjct: 158 SLKELRLYNNQLKRVPEGAFD-----KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 605 AFN 607
             N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  118 bits (298), Expect = 6e-30
 Identities = 65/213 (30%), Positives = 93/213 (43%), Gaps = 31/213 (14%)

Query: 444 TNVPT-LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLC 502
           +N+P     L+L  N  LSSLP   F  L KL +L L    L+++P   F EL NL+ L 
Sbjct: 33  SNIPADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91

Query: 503 LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGD 562
           +  N L  +P  +F  L+NL  L L  N + +L                 F+ LT     
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV-------------FDSLT----- 133

Query: 563 YFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSY 622
                       L  L+L  NEL  L    F   + LK L+L  N+    P+     L+ 
Sbjct: 134 -----------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182

Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
           L+ + L NNQLK + +  +  L +L+ L L  N
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  114 bits (287), Expect = 2e-28
 Identities = 65/255 (25%), Positives = 93/255 (36%), Gaps = 65/255 (25%)

Query: 252 NRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
            + T+IPS   N P   + L +  N++ +L + +F     L  + L  N+L T+  G F 
Sbjct: 26  KKLTAIPS---NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK 82

Query: 312 GLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIF 371
            L  +  L +  N+L  L       G F+ L  +  L L  N+L  L    F        
Sbjct: 83  ELKNLETLWVTDNKLQALPI-----GVFDQLVNLAELRLDRNQLKSLPPRVF-------- 129

Query: 372 SFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLS 431
                                       D+L  L                    T L L 
Sbjct: 130 ----------------------------DSLTKL--------------------TYLSLG 141

Query: 432 HNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ 491
           +N L+ L    F  + +L  L L  N  L  +P G FD L +L+ L L    LK +P+  
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200

Query: 492 FDELLNLKYLCLAHN 506
           FD L  LK L L  N
Sbjct: 201 FDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  106 bits (266), Expect = 1e-25
 Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 21/199 (10%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
             ++L L  N    SL        FH L  LR+L L+DN+++ +  GI K   NL  L +
Sbjct: 38  DTKKLDLQSNKL-SSLPS----KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
             N+  ++P    +    L  L +  N++ +L    F S   L  + L  N L ++  G 
Sbjct: 93  TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152

Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHIT 369
           F+ L  +  L L  N+L ++       GAF+ L ++  L L  N+L ++    F      
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPE-----GAFDKLTELKTLKLDNNQLKRVPEGAFDSLE-- 205

Query: 370 IFSFFQDFQKLKSLDLNGN 388
                    KLK L L  N
Sbjct: 206 ---------KLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  100 bits (251), Expect = 9e-24
 Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 32/208 (15%)

Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
            L +IP        + K L L  N L+ +P   F  L  L  L L++N +  L  G    
Sbjct: 27  KLTAIPSNIPA---DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83

Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL 602
           L +++ L ++ NKL       F+        +L EL L+ N+L  L P  F         
Sbjct: 84  LKNLETLWVTDNKLQALPIGVFD-----QLVNLAELRLDRNQLKSLPPRVFD-------- 130

Query: 603 KLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662
                            L+ L  + L  N+L+++    +  L  L++L L NN +  + E
Sbjct: 131 ----------------SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174

Query: 663 TCFFNSSQLQIINLSFNRLEKLPERLFN 690
             F   ++L+ + L  N+L+++PE  F+
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEGAFD 202

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  131 bits (331), Expect = 4e-34
 Identities = 60/211 (28%), Positives = 87/211 (41%), Gaps = 12/211 (5%)

Query: 374 FQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSH 432
                    ++ +   L  L    L      L++ +N + T S + L  Y  LT+L+L  
Sbjct: 6   VSKVASHLEVNCDKRNLTAL-PPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 433 NNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQF 492
             L +L+      +P L  L+LS N  L SLP      L  L VLD++   L S+P    
Sbjct: 65  AELTKLQ--VDGTLPVLGTLDLSHN-QLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 493 DELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS 552
             L  L+ L L  N L  +P  +      L  L L+NNN+  L  G L GL ++  L L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 553 FNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
            N L T    +F +        L    L+ N
Sbjct: 181 ENSLYTIPKGFFGSH------LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  121 bits (306), Expect = 8e-31
 Identities = 59/234 (25%), Positives = 75/234 (32%), Gaps = 45/234 (19%)

Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
                LT +            IL+L  N L   +             ++  LNL    L 
Sbjct: 17  CDKRNLTALPPDLP---KDTTILHLSENLLYTFSL-----ATLMPYTRLTQLNLDRAELT 68

Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
           KL                     L +LDL+                       NQ+ +L 
Sbjct: 69  KL-------------QVDGTLPVLGTLDLS----------------------HNQLQSLP 93

Query: 417 SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEV 476
                   LT LD+S N L  L   A   +  L  L L  N  L +LP G   P  KLE 
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEK 152

Query: 477 LDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
           L LA   L  +P    + L NL  L L  N L  IP+  F     L +  L  N
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  121 bits (305), Expect = 1e-30
 Identities = 61/231 (26%), Positives = 88/231 (38%), Gaps = 37/231 (16%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
             +++    NL  L P    +      L+LS N  L +  +    P  +L  L+L    L
Sbjct: 12  HLEVNCDKRNLTALPPDLPKD---TTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
             +       L  L  L L+HN L  +P +  + L  LT LD+S N + +L +G+L GL 
Sbjct: 68  TKLQV--DGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKL 604
            ++ L L  N+L T             T  LE+L+L NN LT L                
Sbjct: 125 ELQELYLKGNELKTLPPGLLT-----PTPKLEKLSLANNNLTELPAGLLN---------- 169

Query: 605 AFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
                         GL  L  + L  N L TI    +G    L    L+ N
Sbjct: 170 --------------GLENLDTLLLQENSLYTIPKGFFG-SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  112 bits (282), Expect = 1e-27
 Identities = 55/239 (23%), Positives = 86/239 (35%), Gaps = 41/239 (17%)

Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
           P+     +     ++     L ++P    D   +   L L+ N L             LT
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
            L+L    +  L+V     LP +  LDLS N+L +               +L  L+++ N
Sbjct: 59  QLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLG------QTLPALTVLDVSFN 110

Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGY 643
            LT L   +                          GL  LQE+ L  N+LKT+       
Sbjct: 111 RLTSLPLGALR------------------------GLGELQELYLKGNELKTLPPGLLTP 146

Query: 644 LPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT------FLYTN 696
            P+L KL+L NNN+  +          L  + L  N L  +P+  F +      FL+ N
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  102 bits (255), Expect = 4e-24
 Identities = 50/247 (20%), Positives = 83/247 (33%), Gaps = 48/247 (19%)

Query: 213 EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILS 272
           E   + +   ++     + A+   + K   +   L +  N   +    +L     L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 273 MAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSD 332
           +    +  L+ D  L    L  + L  N+L ++       L  + +L++ +NRL  L   
Sbjct: 62  LDRAELTKLQVDGTLPV--LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSL--- 115

Query: 333 TFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLIN 392
               GA  GL ++  L L  N L  L       T            KL+ L L       
Sbjct: 116 --PLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----------KLEKLSLA------ 156

Query: 393 LESTGLEDTLDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLL 450
                           +N +T L +  LN  L  L  L L  N+L  +    F +   L 
Sbjct: 157 ----------------NNNLTELPAGLLN-GLENLDTLLLQENSLYTIPKGFFGS-HLLP 198

Query: 451 HLNLSRN 457
              L  N
Sbjct: 199 FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  100 bits (251), Expect = 1e-23
 Identities = 50/220 (22%), Positives = 82/220 (37%), Gaps = 29/220 (13%)

Query: 169 LDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDN 228
           ++     L  L   L          L L++NL        FS +       L  L+L   
Sbjct: 15  VNCDKRNLTALPPDLPK----DTTILHLSENLLYT-----FSLATLMPYTRLTQLNLDRA 65

Query: 229 QIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLS 288
           ++  ++  +      L  L + HN+  S+P +      AL +L +++NR+ +L   +   
Sbjct: 66  ELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 289 QRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHIL 348
              L+ + L+GN L T+  G      K+  L+L  N L +L       G  NGL  +  L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-----PAGLLNGLENLDTL 177

Query: 349 NLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN 388
            L  N L  +    F                L    L+GN
Sbjct: 178 LLQENSLYTIPKGFF------------GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 95.9 bits (239), Expect = 5e-22
 Identities = 52/194 (26%), Positives = 72/194 (37%), Gaps = 17/194 (8%)

Query: 162 SDIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
            D+P     L  S N L   S          L +L L           +        L  
Sbjct: 27  PDLPKDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDR-------AELTKLQVDGTLPV 78

Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
           L  LDLS NQ++++   + +    L  L +  NR TS+P  +L G   L+ L +  N + 
Sbjct: 79  LGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
           TL          LE++ L  N LT +  G  NGL  +  L L  N L      T   G F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-----TIPKGFF 192

Query: 340 NGLAKIHILNLGYN 353
            G   +    L  N
Sbjct: 193 -GSHLLPFAFLHGN 205

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  123 bits (311), Expect = 6e-32
 Identities = 49/256 (19%), Positives = 95/256 (37%), Gaps = 37/256 (14%)

Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS 461
            ++  V    I  + S   +      L L   +L+ +   AF+N+P +  + +S +  L 
Sbjct: 13  EEDFRVTCKDIQRIPSLPPS---TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 462 SLPVGGFDPLKKLEVLDLAAT-GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM-MFKNL 519
            L    F  L K+  +++  T  L  I      EL  LK+L + +  L   P++    + 
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 520 LNLTYLDLSNNN-IVNLRVGSLYGLPSMKR-LDLSFNKLTTFKGDYFNTKSKPNTSSLEE 577
                L++++N  + ++ V +  GL +    L L  N  T+ +G  FN       + L+ 
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG------TKLDA 183

Query: 578 LNL-NNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTI 636
           + L  N  LT +   +F     + +                        +D+S   +  +
Sbjct: 184 VYLNKNKYLTVIDKDAF---GGVYSG--------------------PSLLDVSQTSVTAL 220

Query: 637 DDYDYGYLPRLRKLNL 652
                 +L  L   N 
Sbjct: 221 PSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  122 bits (309), Expect = 8e-32
 Identities = 41/292 (14%), Positives = 87/292 (29%), Gaps = 66/292 (22%)

Query: 241 CDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGN 300
           C    + R+       IPS+    P + + L +    + T+ + +F +   + RI +  +
Sbjct: 10  CHQEEDFRVTCKDIQRIPSL----PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 301 -RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLN 359
             L  +E  +F  L+K+  + +   R    N       A   L  +  L +    L    
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTR----NLTYIDPDALKELPLLKFLGIFNTGL---- 117

Query: 360 SDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA 419
                       +          L++  N                       +T++  +A
Sbjct: 118 ------KMFPDLTKVYSTDIFFILEITDN---------------------PYMTSIPVNA 150

Query: 420 LNY--KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVL 477
                     L L +N    ++  AF     L  + L++N +L+ +    F  +      
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYS---- 205

Query: 478 DLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529
                                  L ++   +T +P    ++L  L   +   
Sbjct: 206 -------------------GPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  122 bits (307), Expect = 2e-31
 Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 14/210 (6%)

Query: 401 TLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNN-LKELEPTAFTNVPTLLHLNLSRNA 458
           +   L + +  + T+ S A  N   ++++ +S +  L++LE  +F N+  + H+ +    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLN-LKYLCLAHN-HLTEIPEMMF 516
           +L+ +       L  L+ L +  TGLK  P        +    L +  N ++T IP   F
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 517 KNLLNLT-YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK-LTTFKGDYFNTKSKPNTSS 574
           + L N T  L L NN   +++  +  G   +  + L+ NK LT    D F        S 
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAF----GGVYSG 206

Query: 575 LEELNLNNNELTYLFPSSFTIHSKLKTLKL 604
              L+++   +T L          LK L  
Sbjct: 207 PSLLDVSQTSVTALPSKGL---EHLKELIA 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  103 bits (258), Expect = 5e-25
 Identities = 49/260 (18%), Positives = 86/260 (33%), Gaps = 48/260 (18%)

Query: 298 RGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYN-RLN 356
               +  I             L L    L  + S      AF+ L  I  + +  +  L 
Sbjct: 19  TCKDIQRIPSL----PPSTQTLKLIETHLRTIPS-----HAFSNLPNISRIYVSIDVTLQ 69

Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
           +L S +F               K+  +++                          +T + 
Sbjct: 70  QLESHSFYNLS-----------KVTHIEIRNT---------------------RNLTYID 97

Query: 417 SSAL-NYKLLTKLDLSHNNLKEL-EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKK- 473
             AL    LL  L + +  LK   + T   +      L ++ N +++S+PV  F  L   
Sbjct: 98  PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157

Query: 474 LEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN-HLTEIPEMMFKNLLN-LTYLDLSNNN 531
              L L   G  S+  Y F+    L  + L  N +LT I +  F  + +  + LD+S  +
Sbjct: 158 TLTLKLYNNGFTSVQGYAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

Query: 532 IVNLRVGSLYGLPSMKRLDL 551
           +  L    L  L  +   + 
Sbjct: 217 VTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  100 bits (252), Expect = 4e-24
 Identities = 39/205 (19%), Positives = 85/205 (41%), Gaps = 15/205 (7%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
            + L      LR +    FS   + +  + ++ +    +L  + S S F+ L  +  +++
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPN-ISRIYVSID---VTLQQLESHS-FYNLSKVTHIEI 87

Query: 226 SDNQ-IKAIEEGILKGCDNLLELRMDHNRFTSIPSVS-LNGPRALRILSMAYN-RIGTLK 282
            + + +  I+   LK    L  L + +      P ++ +       IL +  N  + ++ 
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 283 ADSFLS-QRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR-LNKLNSDTFQGGAFN 340
            ++F         + L  N  T+++G AFNG  K+  + L  N+ L  ++ D F  G ++
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFG-GVYS 205

Query: 341 GLAKIHILNLGYNRLNKLNSDTFQG 365
           G     +L++    +  L S   + 
Sbjct: 206 GP---SLLDVSQTSVTALPSKGLEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 93.1 bits (232), Expect = 2e-21
 Identities = 36/199 (18%), Positives = 74/199 (37%), Gaps = 16/199 (8%)

Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN-K 555
             +   +    +  IP +      +   L L   ++  +   +   LP++ R+ +S +  
Sbjct: 12  QEEDFRVTCKDIQRIPSL----PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67

Query: 556 LTTFKGDYFNTKSKPNTSSLEELNL-NNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPK 614
           L   +   F      N S +  + + N   LTY+ P +      LK L +       FP 
Sbjct: 68  LQQLESHSFY-----NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD 122

Query: 615 ELIL-GLSYLQEIDLS-NNQLKTIDDYDYGYLPR-LRKLNLNNNNIDAISETCFFNSSQL 671
              +        ++++ N  + +I    +  L      L L NN   ++     FN ++L
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-YAFNGTKL 181

Query: 672 QIINLSFNR-LEKLPERLF 689
             + L+ N+ L  + +  F
Sbjct: 182 DAVYLNKNKYLTVIDKDAF 200

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFN-KFNYFPKELILGLSYLQEIDLSNN 631
            S + L L    L  +   +F+    +  + ++ +             LS +  I++ N 
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 632 Q-LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQ-LQIINLSFN-RLEKLPERL 688
           + L  ID      LP L+ L + N  +    +     S+    I+ ++ N  +  +P   
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 689 FN 690
           F 
Sbjct: 151 FQ 152

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 8e-11
 Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 6/119 (5%)

Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS-NN 631
              E+  +   ++  + PS   +    +TLKL        P      L  +  I +S + 
Sbjct: 11  HQEEDFRVTCKDIQRI-PS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 632 QLKTIDDYDYGYLPRLRKLNL-NNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
            L+ ++ + +  L ++  + + N  N+  I          L+ + +    L+  P+   
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  124 bits (313), Expect = 1e-31
 Identities = 59/323 (18%), Positives = 111/323 (34%), Gaps = 47/323 (14%)

Query: 364 QGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYK 423
           Q T I +            +    + + +  +    D +  L+     +TT+        
Sbjct: 5   QPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQ-YLN 63

Query: 424 LLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATG 483
            L  L+L  N + +L P    N+  +  L LS N  L ++       L+ ++ LDL +T 
Sbjct: 64  NLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS--AIAGLQSIKTLDLTSTQ 118

Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543
           +  +       L NL+ L L  N +T I       L NL YL + N  + +L    L  L
Sbjct: 119 ITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT--PLANL 172

Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
             +  L    NK++             +  +L E++L NN+++ + P             
Sbjct: 173 SKLTTLKADDNKISDISP-------LASLPNLIEVHLKNNQISDVSP------------- 212

Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISET 663
                        +   S L  + L+N  +     +    L       +   +   I+  
Sbjct: 213 -------------LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIAPA 257

Query: 664 CFFNSSQLQIINLSFNRLEKLPE 686
              ++      NL++N    +  
Sbjct: 258 TISDNGTYASPNLTWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  117 bits (295), Expect = 3e-29
 Identities = 60/289 (20%), Positives = 111/289 (38%), Gaps = 21/289 (7%)

Query: 355 LNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITT 414
           L          +++T      D   + +L   G  +  +E     + L  L ++DNQIT 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD 77

Query: 415 LSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL 474
           L+    N   +T+L+LS N LK +       + ++  L+L+    ++ +       L  L
Sbjct: 78  LAPLK-NLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTST-QITDVT--PLAGLSNL 131

Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
           +VL L    + +I       L NL+YL + +  ++++      NL  LT L   +N I +
Sbjct: 132 QVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187

Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFT 594
           +    L  LP++  + L  N+++             NTS+L  + L N  +T        
Sbjct: 188 IS--PLASLPNLIEVHLKNNQISDVSPLA-------NTSNLFIVTLTNQTITNQPVFYNN 238

Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGY 643
                  +K             I         +L+ N    I++  Y +
Sbjct: 239 NLVVPNVVKG--PSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTF 285

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  112 bits (282), Expect = 2e-27
 Identities = 60/268 (22%), Positives = 111/268 (41%), Gaps = 26/268 (9%)

Query: 430 LSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ 489
                +  + P     +   + +   ++ +++         L  +  L    TG+ +I  
Sbjct: 4   TQPTAINVIFP--DPALANAIKIAAGKS-NVTDTV--TQADLDGITTLSAFGTGVTTIEG 58

Query: 490 YQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRL 549
                L NL  L L  N +T++     KNL  +T L+LS N + N+   ++ GL S+K L
Sbjct: 59  --VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTL 112

Query: 550 DLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKF 609
           DL+  ++T               S+L+ L L+ N++T +  S     + L+ L +   + 
Sbjct: 113 DLTSTQITDVTPL-------AGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQV 163

Query: 610 NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSS 669
           +      +  LS L  +   +N++  I       LP L +++L NN I  +S     N+S
Sbjct: 164 SDL--TPLANLSKLTTLKADDNKISDISPLAS--LPNLIEVHLKNNQISDVSP--LANTS 217

Query: 670 QLQIINLSFNRLEKLPERLFNTFLYTNY 697
            L I+ L+   +   P    N  +  N 
Sbjct: 218 NLFIVTLTNQTITNQPVFYNNNLVVPNV 245

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  103 bits (260), Expect = 1e-24
 Identities = 44/261 (16%), Positives = 95/261 (36%), Gaps = 25/261 (9%)

Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
           + +  T     L  +  L      +  IE   ++  +NL+ L +  N+ T +    L   
Sbjct: 29  SNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNL 84

Query: 266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
             +  L ++ N +  + A + L    ++ + L   ++T +      GL+ + +L L  N+
Sbjct: 85  TKITELELSGNPLKNVSAIAGLQS--IKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ 140

Query: 326 LNKLNSDTFQGGAFNGLAKIHILNLGYNR---------LNKLNSDTFQGTHITIFSFFQD 376
           +  ++          GL  +  L++G  +         L+KL +       I+  S    
Sbjct: 141 ITNIS-------PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS 193

Query: 377 FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK 436
              L  + L  N + ++        L  + + +  IT       N  L+    +   +  
Sbjct: 194 LPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNN-NLVVPNVVKGPSGA 252

Query: 437 ELEPTAFTNVPTLLHLNLSRN 457
            + P   ++  T    NL+ N
Sbjct: 253 PIAPATISDNGTYASPNLTWN 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  100 bits (250), Expect = 3e-23
 Identities = 50/305 (16%), Positives = 101/305 (33%), Gaps = 30/305 (9%)

Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
             I        L N   +    + +           D +  L       T+I    +   
Sbjct: 7   TAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE--GVQYL 62

Query: 266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
             L  L +  N+I  L     L++  +  + L GN L  +      GL  I  L+L   +
Sbjct: 63  NNLIGLELKDNQITDLAPLKNLTK--ITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQ 118

Query: 326 LNKLNSDTFQGGAFNGLAKIHILNLGYNR---------LNKLNSDTFQGTHITIFSFFQD 376
           +  +           GL+ + +L L  N+         L  L   +     ++  +   +
Sbjct: 119 ITDVT-------PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLAN 171

Query: 377 FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK 436
             KL +L  + N + ++        L  +++++NQI+ +S  A N   L  + L++  + 
Sbjct: 172 LSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLA-NTSNLFIVTLTNQTIT 230

Query: 437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ--YQFDE 494
                   N   L+  N+ +    + +              +L       I    Y F++
Sbjct: 231 NQPVFYNNN---LVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQ 287

Query: 495 LLNLK 499
            +  K
Sbjct: 288 SVTFK 292

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  124 bits (313), Expect = 2e-31
 Identities = 60/315 (19%), Positives = 102/315 (32%), Gaps = 33/315 (10%)

Query: 380 LKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKEL- 438
            ++L   G+  +      L          D      +    N         +   LK   
Sbjct: 14  RENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72

Query: 439 EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL 498
           +       P  + L L     L   P   F  L  L+ + + A GL  +P     +   L
Sbjct: 73  DLLEDATQPGRVALELRSV-PLPQFPDQAFR-LSHLQHMTIDAAGLMELPD-TMQQFAGL 129

Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
           + L LA N L  +P     +L  L  L +            L  LP              
Sbjct: 130 ETLTLARNPLRALPAS-IASLNRLRELSIRACP-------ELTELPE------PLASTD- 174

Query: 559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL 618
                  +       +L+ L L    +  L P+S      LK+LK+  +  +      I 
Sbjct: 175 ------ASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALGPA-IH 226

Query: 619 GLSYLQEIDLS-NNQLKTIDDYDYGYLPRLRKLNL-NNNNIDAISETCFFNSSQLQIINL 676
            L  L+E+DL     L+      +G    L++L L + +N+  +        +QL+ ++L
Sbjct: 227 HLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDL 284

Query: 677 SFN-RLEKLPERLFN 690
                L +LP  +  
Sbjct: 285 RGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (281), Expect = 4e-27
 Identities = 58/306 (18%), Positives = 99/306 (32%), Gaps = 37/306 (12%)

Query: 372 SFFQDFQKLKSL-DLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSS--ALNYKLLTKL 428
            +     + +   + + N   +       +           +   +             L
Sbjct: 27  PYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVAL 86

Query: 429 DLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
           +L    L +  P     +  L H+ +     L  LP         LE L LA   L+++P
Sbjct: 87  ELRSVPLPQF-PDQAFRLSHLQHMTIDAA-GLMELP-DTMQQFAGLETLTLARNPLRALP 143

Query: 489 QYQFDELLNLKYLCLAH-NHLTEIPE--------MMFKNLLNLTYLDLSNNNIVNLRVGS 539
                 L  L+ L +     LTE+PE           + L+NL  L L    I +L   S
Sbjct: 144 A-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PAS 201

Query: 540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT----SSLEELNL-NNNELTYLFPSSFT 594
           +  L ++K L +  + L+                     LEEL+L     L    P  F 
Sbjct: 202 IANLQNLKSLKIRNSPLSAL----------GPAIHHLPKLEELDLRGCTALRNY-PPIFG 250

Query: 595 IHSKLKTLKLA-FNKFNYFPKELILGLSYLQEIDLSNN-QLKTIDDYDYGYLPRLRKLNL 652
             + LK L L   +     P + I  L+ L+++DL     L  +       LP    + +
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILV 308

Query: 653 NNNNID 658
             +   
Sbjct: 309 PPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (272), Expect = 5e-26
 Identities = 55/255 (21%), Positives = 93/255 (36%), Gaps = 33/255 (12%)

Query: 379 KLKSLDLNGNFLINL-ESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKE 437
              +L+L    L    +       L ++ +    +  L  +   +  L  L L+ N L+ 
Sbjct: 82  GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA 141

Query: 438 LEPTAFTNVPTLLHLNLSRNAHLSSLP--------VGGFDPLKKLEVLDLAATGLKSIPQ 489
           L P +  ++  L  L++     L+ LP         G    L  L+ L L  TG++S+P 
Sbjct: 142 L-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA 200

Query: 490 YQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRV--GSLYGLPSMK 547
                L NLK L + ++ L+ +   +  +L  L  LDL       LR       G   +K
Sbjct: 201 -SIANLQNLKSLKIRNSPLSALGPAI-HHLPKLEELDLRGCT--ALRNYPPIFGGRAPLK 256

Query: 548 RLDLS-FNKLTTFKGDYFNTKSKPNT----SSLEELNL-NNNELTYLFPSSFTIHSKLKT 601
           RL L   + L T           P      + LE+L+L     L+ L PS          
Sbjct: 257 RLILKDCSNLLTL----------PLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQLPANCI 305

Query: 602 LKLAFNKFNYFPKEL 616
           + +  +      +  
Sbjct: 306 ILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.9 bits (234), Expect = 5e-21
 Identities = 59/355 (16%), Positives = 104/355 (29%), Gaps = 49/355 (13%)

Query: 210 STSEFHGLVNLRILDLSD-NQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRAL 268
           S    H       L       ++   + +                         N     
Sbjct: 4   SHHHHHHSSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQAN----S 55

Query: 269 RILSMAYNRIGTLKAD----SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
               +       LKA        +Q     + LR   L      AF  L+ +  + +   
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAA 114

Query: 325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLD 384
            L +L     Q       A +  L L  N L  L +                  +L+ L 
Sbjct: 115 GLMELPDTMQQ------FAGLETLTLARNPLRALPAS------------IASLNRLRELS 156

Query: 385 LNGNFLI--------NLESTGLEDTLDNL---NVRDNQITTLSSSALNYKLLTKLDLSHN 433
           +     +        + +++G    L NL    +    I +L +S  N + L  L + ++
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS 216

Query: 434 NLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA-ATGLKSIPQYQF 492
            L  L   A  ++P L  L+L     L + P   F     L+ L L   + L ++P    
Sbjct: 217 PLSAL-GPAIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPL-DI 273

Query: 493 DELLNLKYLCLAHNH-LTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
             L  L+ L L     L+ +P +    L     + +  +    L        P+ 
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.8 bits (221), Expect = 2e-19
 Identities = 41/236 (17%), Positives = 76/236 (32%), Gaps = 35/236 (14%)

Query: 471 LKKLEVLDLA-ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529
               E L    +T L+       D L   +    A  +          N  N      + 
Sbjct: 11  SSGRENLYFQGSTALRPYH----DVLSQWQRHYNADRNRWHSAWR-QANSNNPQIETRTG 65

Query: 530 NNIVNL--RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT----SSLEELNLNNN 583
             +      +      P    L+L    L  F          P+     S L+ + ++  
Sbjct: 66  RALKATADLLEDAT-QPGRVALELRSVPLPQF----------PDQAFRLSHLQHMTIDAA 114

Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS-NNQLKTIDD---- 638
            L  L P +    + L+TL LA N     P   I  L+ L+E+ +    +L  + +    
Sbjct: 115 GLMEL-PDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLAS 172

Query: 639 ----YDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
                ++  L  L+ L L    I ++  +   N   L+ + +  + L  L   + +
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGPAIHH 227

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 52/333 (15%), Positives = 95/333 (28%), Gaps = 83/333 (24%)

Query: 169 LDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDN 228
              +G AL+  +D L    +     L L        L       +   L +L+ + +   
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSV----PLPQF--PDQAFRLSHLQHMTIDAA 114

Query: 229 QIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLS 288
            +  + + + +    L  L +  N   ++P+                  I +L       
Sbjct: 115 GLMELPDTMQQ-FAGLETLTLARNPLRALPAS-----------------IASLNR----- 151

Query: 289 QRWLERIILRG-NRLTTI--------EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
              L  + +R    LT +          G   GL  +  L L +  +  L +        
Sbjct: 152 ---LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS------I 202

Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE 399
             L  +  L +  + L+ L                    KL+ LDL G            
Sbjct: 203 ANLQNLKSLKIRNSPLSALGPA------------IHHLPKLEELDLRGC----------- 239

Query: 400 DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSH-NNLKELEPTAFTNVPTLLHLNLSRNA 458
                       +            L +L L   +NL  L P     +  L  L+L    
Sbjct: 240 ----------TALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGCV 288

Query: 459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ 491
           +LS LP      L    ++ +       + Q++
Sbjct: 289 NLSRLPS-LIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 29/189 (15%), Positives = 57/189 (30%), Gaps = 16/189 (8%)

Query: 518 NLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEE 577
           +      L    +  +      L         D +                + N+++ + 
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW---------RQANSNNPQI 60

Query: 578 LNLNNNELTYLFPSSFTI--HSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKT 635
                  L                  L+L       FP +    LS+LQ + +    L  
Sbjct: 61  ETRTGRALKAT-ADLLEDATQPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLME 118

Query: 636 IDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLS-FNRLEKLPERLFNTFLY 694
           + D        L  L L  N + A+  +   + ++L+ +++     L +LPE L +T   
Sbjct: 119 LPD-TMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 695 TNYDMAPNL 703
             +    NL
Sbjct: 177 GEHQGLVNL 185

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 19/199 (9%)

Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNL----FGDSLNPIFSTSEFHGLVNLRI 222
             L  + N LR L   + S +R  L+EL +          + L    ++ E  GLVNL+ 
Sbjct: 130 ETLTLARNPLRALPASIASLNR--LRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAY-NRIGTL 281
           L L    I+++   I     NL  L++ ++  +++   +++    L  L +     +   
Sbjct: 188 LRLEWTGIRSLPASIAN-LQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNY 245

Query: 282 KADSFLSQRWLERIILRG-NRLTTIEGGAFNGLAKIHILNLGYN-RLNKLNSDTFQGGAF 339
               F  +  L+R+IL+  + L T+     + L ++  L+L     L++L S        
Sbjct: 246 -PPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPS------LI 297

Query: 340 NGLAKIHILNLGYNRLNKL 358
             L    I+ +  +   +L
Sbjct: 298 AQLPANCIILVPPHLQAQL 316

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  129 bits (324), Expect = 2e-31
 Identities = 45/280 (16%), Positives = 95/280 (33%), Gaps = 23/280 (8%)

Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS 461
           +         I  +      +    K +L   ++ +        + ++  +  + +  + 
Sbjct: 1   MGETITVSTPIKQIFPDD-AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS-DIK 56

Query: 462 SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN 521
           S+   G   L  +  L L    L  I       L NL +L L  N + ++     K+L  
Sbjct: 57  SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKK 110

Query: 522 LTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLN 581
           L  L L +N I ++    L  LP ++ L L  NK+T               + L+ L+L 
Sbjct: 111 LKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDITV-------LSRLTKLDTLSLE 161

Query: 582 NNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDY 641
           +N+++ +        +KL+ L L+ N  +      + GL  L  ++L + +         
Sbjct: 162 DNQISDI--VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 642 GYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRL 681
             L     +   + ++            +   +       
Sbjct: 218 SNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEF 257

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  127 bits (320), Expect = 7e-31
 Identities = 56/292 (19%), Positives = 108/292 (36%), Gaps = 21/292 (7%)

Query: 364 QGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYK 423
             T I        F +    +L    + +  +    +++D +   ++ I ++        
Sbjct: 7   VSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQ-YLP 65

Query: 424 LLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATG 483
            +TKL L+ N L +++P   TN+  L  L L  N  +  L       LKKL+ L L   G
Sbjct: 66  NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS--SLKDLKKLKSLSLEHNG 120

Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543
           +  I       L  L+ L L +N +T+I       L  L  L L +N I ++    L GL
Sbjct: 121 ISDIN--GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIV--PLAGL 174

Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
             ++ L LS N ++  +              L+ L L + E      +  +      T+K
Sbjct: 175 TKLQNLYLSKNHISDLRALAGLKN-------LDVLELFSQECLNKPINHQSNLVVPNTVK 227

Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
                 +    E+I      ++ ++  +  +  ++  + +   +        
Sbjct: 228 NTDG--SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  106 bits (265), Expect = 4e-24
 Identities = 42/264 (15%), Positives = 86/264 (32%), Gaps = 36/264 (13%)

Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMD 250
           + E             PI               +L    +           +++ ++  +
Sbjct: 1   MGETITVST-------PIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIAN 51

Query: 251 HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF 310
           ++   S+    +     +  L +  N++  +K  + L    L  + L  N++  +     
Sbjct: 52  NSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKPLTNLKN--LGWLFLDENKIKDLSS--L 105

Query: 311 NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITI 370
             L K+  L+L +N ++ +N           L ++  L LG N+             IT 
Sbjct: 106 KDLKKLKSLSLEHNGISDIN-------GLVHLPQLESLYLGNNK-------------ITD 145

Query: 371 FSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDL 430
            +      KL +L L  N + ++        L NL +  N I+ L + A   K L  L+L
Sbjct: 146 ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA-GLKNLDVLEL 204

Query: 431 SHNNLKELEPTAFTNVPTLLHLNL 454
                        +N+     +  
Sbjct: 205 FSQECLNKPINHQSNLVVPNTVKN 228

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  104 bits (259), Expect = 2e-23
 Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 19/195 (9%)

Query: 492 FDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDL 551
            D         L    +T+        L ++  +  +N++I +++   +  LP++ +L L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFL 72

Query: 552 SFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNY 611
           + NKLT  K              L  L L+ N++  L  SS     KLK+L L  N  + 
Sbjct: 73  NGNKLTDIKPLTNLKN-------LGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISD 123

Query: 612 FPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQL 671
                ++ L  L+ + L NN++  I       L +L  L+L +N I  I        ++L
Sbjct: 124 I--NGLVHLPQLESLYLGNNKITDITVLSR--LTKLDTLSLEDNQISDIVP--LAGLTKL 177

Query: 672 QIINLSFNRLEKLPE 686
           Q + LS N +  L  
Sbjct: 178 QNLYLSKNHISDLRA 192

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  104 bits (259), Expect = 2e-23
 Identities = 55/342 (16%), Positives = 110/342 (32%), Gaps = 36/342 (10%)

Query: 276 NRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQ 335
             I  +  D   ++    +  L+   +T       N L  I  +    + +  +      
Sbjct: 9   TPIKQIFPDDAFAE--TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ----- 59

Query: 336 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES 395
                 L  +  L L  N+             +T      + + L  L L+ N + +L  
Sbjct: 60  --GIQYLPNVTKLFLNGNK-------------LTDIKPLTNLKNLGWLFLDENKIKDLS- 103

Query: 396 TGLED--TLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
             L+D   L +L++  N I+ ++    +   L  L L +N + ++     + +  L  L+
Sbjct: 104 -SLKDLKKLKSLSLEHNGISDINGLV-HLPQLESLYLGNNKITDITV--LSRLTKLDTLS 159

Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE 513
           L  N  +S +       L KL+ L L+   +  +       L NL  L L        P 
Sbjct: 160 LEDN-QISDIV--PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPI 214

Query: 514 MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTS 573
               NL+    +  ++ ++V   + S  G      +     + T      F        +
Sbjct: 215 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKA 274

Query: 574 SLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615
                      L  ++  S+ +   +   K+        PK 
Sbjct: 275 KARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKP 316

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 91.3 bits (226), Expect = 3e-19
 Identities = 51/286 (17%), Positives = 103/286 (36%), Gaps = 41/286 (14%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
             + +        ++D +     +++ ++   ++        I S      L N+  L L
Sbjct: 23  TIKDNLKKK---SVTDAVTQNELNSIDQIIANNSD-------IKSVQGIQYLPNVTKLFL 72

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
           + N++  I+   L    NL  L +D N+   +   SL   + L+ LS+ +N I  +    
Sbjct: 73  NGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDINGLV 128

Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
            L Q  LE + L  N++T I     + L K+  L+L  N+++ +           GL K+
Sbjct: 129 HLPQ--LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP-------LAGLTKL 177

Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED--TLD 403
             L L  N             HI+        + L  L+L     +N       +    +
Sbjct: 178 QNLYLSKN-------------HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTL 449
            +   D  + T    + +     K ++  +  +     +F     +
Sbjct: 225 TVKNTDGSLVTPEIIS-DDGDYEKPNVKWHLPEFTNEVSFIFYQPV 269

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.8 bits (170), Expect = 1e-12
 Identities = 49/286 (17%), Positives = 87/286 (30%), Gaps = 40/286 (13%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
           + +L  +GN L  +       +   L  L L +N        I   S    L  L+ L L
Sbjct: 67  VTKLFLNGNKLTDIKPLTNLKN---LGWLFLDEN-------KIKDLSSLKDLKKLKSLSL 116

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
             N I  I    L     L  L + +N+ T I    L+    L  LS+  N+I  +   +
Sbjct: 117 EHNGISDING--LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA 172

Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
            L++  L+ + L  N ++ +      GL  + +L L                  N  + +
Sbjct: 173 GLTK--LQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP--------INHQSNL 220

Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNL 405
            + N   N    L +         I S   D++         N   +L     E +    
Sbjct: 221 VVPNTVKNTDGSLVT-------PEIISDDGDYE-------KPNVKWHLPEFTNEVSFIFY 266

Query: 406 NVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLH 451
                            + L ++     ++            T + 
Sbjct: 267 QPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRIT 312

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  124 bits (313), Expect = 3e-31
 Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 6/164 (3%)

Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
             L      L++  N ++ L +     +L  L  L LSHN+L  +   AF  VP L +L+
Sbjct: 35  QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE 513
           LS N HL +L    F  L+ LEVL L    +  + +  F+++  L+ L L+ N ++  P 
Sbjct: 95  LSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 514 MMFKN---LLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
            + K+   L  L  LDLS+N +  L +  L  LP+  +  L  +
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  122 bits (308), Expect = 1e-30
 Identities = 62/273 (22%), Positives = 93/273 (34%), Gaps = 51/273 (18%)

Query: 425 LTKLDLSHNNLKELEP-TAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATG 483
              LDLSHNNL  L      T +  L  L LS N HL+ +    F P+  L  LDL+   
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS--- 96

Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543
                                 NHL  + E +F +L  L  L L NN+IV +   +   +
Sbjct: 97  ---------------------SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135

Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
             +++L LS N+++ F  +    K       L  L+L++N+L  L  +            
Sbjct: 136 AQLQKLYLSQNQISRFPVELI--KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISET 663
           L                       L NN L   D   Y      +   L++         
Sbjct: 194 L----------------------YLHNNPL-ECDCKLYQLFSHWQYRQLSSVMDFQEDLY 230

Query: 664 CFFNSSQLQIINLSFNRLEKLPERLFNTFLYTN 696
           C  +     I +L F    +  E  +   L   
Sbjct: 231 CMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDT 263

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  109 bits (274), Expect = 4e-26
 Identities = 49/264 (18%), Positives = 85/264 (32%), Gaps = 46/264 (17%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
               L L+ N    +L+ + +      L NL  L LS N +  I         NL  L +
Sbjct: 40  YTALLDLSHN----NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
             N   ++     +  +AL +L                         L  N +  ++  A
Sbjct: 96  SSNHLHTLDEFLFSDLQALEVLL------------------------LYNNHIVVVDRNA 131

Query: 310 FNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHIT 369
           F  +A++  L L  N++++   +  +    N L K+ +L+L  N+L KL     Q     
Sbjct: 132 FEDMAQLQKLYLSQNQISRFPVELIKD--GNKLPKLMLLDLSSNKLKKLPLTDLQKLP-- 187

Query: 370 IFSFFQDFQKLKSLDLNGN------FLINLESTGLEDTLDNLNVRDNQITTLSSSALNYK 423
                        L L+ N       L  L S      L ++      +  + S  L+  
Sbjct: 188 -------AWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNI 240

Query: 424 L-LTKLDLSHNNLKELEPTAFTNV 446
             L   + S       E      +
Sbjct: 241 FSLDFFNCSEYKESAWEAHLGDTL 264

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 99.1 bits (247), Expect = 1e-22
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 7/150 (4%)

Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
                LDLS N L+  + ++  T      ++L  L L++N L ++   +F     L+ L 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPT----RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISET 663
           L+ N  +   + L   L  L+ + L NN +  +D   +  + +L+KL L+ N I      
Sbjct: 95  LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154

Query: 664 CFFNSS---QLQIINLSFNRLEKLPERLFN 690
              + +   +L +++LS N+L+KLP     
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  125 bits (315), Expect = 2e-30
 Identities = 58/284 (20%), Positives = 97/284 (34%), Gaps = 38/284 (13%)

Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
            +  +N +       F+         L       ++ +     + +   L L    L S+
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74

Query: 488 PQYQFDELL-NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM 546
           P    D L   +  L +  N L  +PE+      +L YLD  +N +  L         S+
Sbjct: 75  P----DNLPPQITVLEITQNALISLPEL----PASLEYLDACDNRLSTLPEL----PASL 122

Query: 547 KRLDLSFNKLTTFKGDYFNTKSKPNT-SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLA 605
           K LD+  N+LT            P   + LE +N +NN+LT L P   T    L+ L + 
Sbjct: 123 KHLDVDNNQLTML----------PELPALLEYINADNNQLTML-PELPT---SLEVLSVR 168

Query: 606 FNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK----LNLNNNNIDAIS 661
            N+  + P+        L+ +D+S N L+++            +         N I  I 
Sbjct: 169 NNQLTFLPELP----ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRITHIP 223

Query: 662 ETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAPNLVF 705
           E    +      I L  N L        +          P + F
Sbjct: 224 E-NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  119 bits (299), Expect = 3e-28
 Identities = 66/347 (19%), Positives = 115/347 (33%), Gaps = 61/347 (17%)

Query: 350 LGYNRLNKLNSDTFQGTHITIF-SFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVR 408
           L  N    L+ ++F  T    +  +F  + K +   L G       S   E  ++     
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF--- 61

Query: 409 DNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGF 468
                            ++L L+  NL  L          +  L +++N  L SLP    
Sbjct: 62  -----------------SELQLNRLNLSSLPDNLPPQ---ITVLEITQN-ALISLP---- 96

Query: 469 DPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLS 528
           +    LE LD     L ++P    +   +LK+L + +N LT +PE        L Y++  
Sbjct: 97  ELPASLEYLDACDNRLSTLP----ELPASLKHLDVDNNQLTMLPE----LPALLEYINAD 148

Query: 529 NNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT-SSLEELNLNNNELTY 587
           NN +  L         S++ L +  N+LT            P    SLE L+++ N L  
Sbjct: 149 NNQLTML----PELPTSLEVLSVRNNQLTFL----------PELPESLEALDVSTNLLES 194

Query: 588 LFPSSFTIHSKLKT----LKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGY 643
           L P+    +   +      +   N+  + P+  IL L     I L +N L +        
Sbjct: 195 L-PAVPVRNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 644 LPRLRKLNLNNNNID---AISETCFFNSSQLQIINLSFNRLEKLPER 687
                  +              T     +         N+   + + 
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  118 bits (298), Expect = 3e-28
 Identities = 58/311 (18%), Positives = 107/311 (34%), Gaps = 49/311 (15%)

Query: 405 LNVRDNQITTLSSSALNY-KLLTKLDLSHNN----LKELEPTAFTNVPTLLHLNLSRNAH 459
            N   N I+   +   +      K  L   N    +  L+            L L+R  +
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ---FSELQLNRL-N 70

Query: 460 LSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNL 519
           LSSLP        ++ VL++    L S+P    +   +L+YL    N L+ +PE      
Sbjct: 71  LSSLPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE----LP 119

Query: 520 LNLTYLDLSNNNIVNL--RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT-SSLE 576
            +L +LD+ NN +  L      L      + ++   N+LT            P   +SLE
Sbjct: 120 ASLKHLDVDNNQLTMLPELPALL------EYINADNNQLTML----------PELPTSLE 163

Query: 577 ELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE----IDLSNNQ 632
            L++ NN+LT+L P        L+ L ++ N     P  + +   + +E         N+
Sbjct: 164 VLSVRNNQLTFL-PELP---ESLEALDVSTNLLESLP-AVPVRNHHSEETEIFFRCRENR 218

Query: 633 LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTF 692
           +  I + +   L     + L +N + +         +     +           +     
Sbjct: 219 ITHIPE-NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277

Query: 693 LYTNYDMAPNL 703
                 +    
Sbjct: 278 RPLADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.9 bits (246), Expect = 9e-22
 Identities = 56/372 (15%), Positives = 115/372 (30%), Gaps = 53/372 (14%)

Query: 169 LDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDN 228
            +   N +       FS   D  ++  L       + N   S  +   +     L L+  
Sbjct: 15  QNSFYNTISGTYADYFS-AWDKWEKQALPGE----NRNEAVSLLKECLINQFSELQLNRL 69

Query: 229 QIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLS 288
            + ++ + +      +  L +  N   S+P      P +L  L    NR+ TL  +   S
Sbjct: 70  NLSSLPDNLPP---QITVLEITQNALISLP----ELPASLEYLDACDNRLSTLP-ELPAS 121

Query: 289 QRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHIL 348
              L+ + +  N+LT +        A +  +N   N+L  L               + +L
Sbjct: 122 ---LKHLDVDNNQLTMLP----ELPALLEYINADNNQLTMLPEL---------PTSLEVL 165

Query: 349 NLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL-----ESTGLEDTLD 403
           ++  N+L  L                   + L++LD++ N L +L      +   E+T  
Sbjct: 166 SVRNNQLTFLPEL---------------PESLEALDVSTNLLESLPAVPVRNHHSEETEI 210

Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
               R+N+IT +  + L+      + L  N L         +  T          + S  
Sbjct: 211 FFRCRENRITHIPENILSLDPTCTIILEDNPLSSR-IRESLSQQTAQPDYHGPRIYFSMS 269

Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
              G        + D          Q    ++ +        N  +   + +  + ++  
Sbjct: 270 D--GQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRL-SDTVSAR 326

Query: 524 YLDLSNNNIVNL 535
                   +   
Sbjct: 327 NTSGFREQVAAW 338

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.2 bits (195), Expect = 2e-15
 Identities = 48/299 (16%), Positives = 90/299 (30%), Gaps = 44/299 (14%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
              L  +   L  L D L       +  L +  N    SL  + +        +L  LD 
Sbjct: 61  FSELQLNRLNLSSLPDNLPP----QITVLEITQNAL-ISLPELPA--------SLEYLDA 107

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
            DN++  + E       +L  L +D+N+ T +P      P  L  ++   N++  L    
Sbjct: 108 CDNRLSTLPELP----ASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTML--PE 157

Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
             +   LE + +R N+LT +          +  L++  N L  L +   +    +     
Sbjct: 158 LPTS--LEVLSVRNNQLTFLP----ELPESLEALDVSTNLLESLPAVPVRNH--HSEETE 209

Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED-TLDN 404
                  NR+  +  +                    ++ L  N L +     L   T   
Sbjct: 210 IFFRCRENRITHIPEN------------ILSLDPTCTIILEDNPLSSRIRESLSQQTAQP 257

Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
                    ++S    N       D       E + +  + +          N   + L
Sbjct: 258 DYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFL 316

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  112 bits (281), Expect = 3e-28
 Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 2/136 (1%)

Query: 396 TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
           T L +T+  + +  N I  +   A   YK L ++DLS+N + EL P AF  + +L  L L
Sbjct: 28  TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87

Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
             N  ++ LP   F+ L  L++L L A  +  +    F +L NL  L L  N L  I + 
Sbjct: 88  YGN-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 515 MFKNLLNLTYLDLSNN 530
            F  L  +  + L+ N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  101 bits (254), Expect = 1e-24
 Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 30/158 (18%)

Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
           T++ L  N +K + P AF+    L  ++LS N  +S L    F  L+             
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLR------------- 80

Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
                      +L  L L  N +TE+P+ +F+ L +L  L L+ N I  LRV +   L +
Sbjct: 81  -----------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129

Query: 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
           +  L L  NKL T     F+        +++ ++L  N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFS-----PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 92.0 bits (229), Expect = 2e-21
 Identities = 44/176 (25%), Positives = 64/176 (36%), Gaps = 32/176 (18%)

Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
           GL  IP         +  + L  N +  IP   F     L  +DLSNN I  L   +  G
Sbjct: 22  GLTEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78

Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL 602
           L S+  L L  NK+T      F         SL+ L LN N++  L   +F         
Sbjct: 79  LRSLNSLVLYGNKITELPKSLFE-----GLFSLQLLLLNANKINCLRVDAFQ-------- 125

Query: 603 KLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
                            L  L  + L +N+L+TI    +  L  ++ ++L  N   
Sbjct: 126 ----------------DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 89.7 bits (223), Expect = 2e-20
 Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 5/135 (3%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
           T+ E+RL  N    ++  I   + F     LR +DLS+NQI  +     +G  +L  L +
Sbjct: 33  TITEIRLEQN----TIKVIPPGA-FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
             N+ T +P     G  +L++L +  N+I  L+ D+F     L  + L  N+L TI  G 
Sbjct: 88  YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147

Query: 310 FNGLAKIHILNLGYN 324
           F+ L  I  ++L  N
Sbjct: 148 FSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 81.6 bits (202), Expect = 9e-18
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 16/143 (11%)

Query: 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
           E+R++ N    IP  + +  + LR + ++ N+I  L  D+F   R L  ++L GN++T +
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 306 EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 365
               F GL  + +L L  N++N L     +  AF  L  +++L+L  N+L  +   TF  
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCL-----RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 366 THITIFSFFQDFQKLKSLDLNGN 388
                       + ++++ L  N
Sbjct: 151 -----------LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 81.2 bits (201), Expect = 2e-17
 Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 20/155 (12%)

Query: 251 HNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF 310
               T IP+   N P  +  + +  N I  +   +F   + L RI L  N+++ +   AF
Sbjct: 20  GKGLTEIPT---NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76

Query: 311 NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITI 370
            GL  ++ L L  N++ +L         F GL  + +L L  N++N L  D         
Sbjct: 77  QGLRSLNSLVLYGNKITELPK-----SLFEGLFSLQLLLLNANKINCLRVDA-------- 123

Query: 371 FSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNL 405
              FQD   L  L L  N L  + + G    L  +
Sbjct: 124 ---FQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAI 154

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 79.7 bits (197), Expect = 5e-17
 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
            ++ E+ L  N +  + P +F+ + KL+ + L+ N+ +    +   GL  L  + L  N+
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 633 LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT- 691
           +  +    +  L  L+ L LN N I+ +    F +   L +++L  N+L+ + +  F+  
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 692 ------FLYTN 696
                  L  N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 79.3 bits (196), Expect = 6e-17
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
             +  + L  N IK I  G       L  + + +N+ + +   +  G R+L  L +  N+
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
           I  L    F     L+ ++L  N++  +   AF  L  +++L+L  N+L  +       G
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-----G 146

Query: 338 AFNGLAKIHILNLGYN 353
            F+ L  I  ++L  N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  113 bits (286), Expect = 4e-28
 Identities = 49/277 (17%), Positives = 103/277 (37%), Gaps = 28/277 (10%)

Query: 410 NQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFD 469
            QI +       +    K +L   ++ +        + ++  +  + +  + S+   G  
Sbjct: 15  KQIFSDD----AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS-DIKSVQ--GIQ 65

Query: 470 PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529
            L  +  L L    L  I       L NL +L L  N + ++     K+L  L  L L +
Sbjct: 66  YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEH 121

Query: 530 NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLF 589
           N I ++    L  LP ++ L L  NK+T               + L+ L+L +N+++ + 
Sbjct: 122 NGISDIN--GLVHLPQLESLYLGNNKITDITV-------LSRLTKLDTLSLEDNQISDI- 171

Query: 590 PSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
                  +KL+ L L+ N  +      + GL  L  ++L + +           L     
Sbjct: 172 -VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 650 LNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686
           +   + ++  ++     +    +  N+ ++  E   E
Sbjct: 229 VKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  112 bits (282), Expect = 1e-27
 Identities = 59/301 (19%), Positives = 107/301 (35%), Gaps = 33/301 (10%)

Query: 295 IILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNR 354
            I     +  I     +  A+    NL    +    +        N L  I  +    + 
Sbjct: 7   TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVT-------QNELNSIDQIIANNSD 57

Query: 355 LNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITT 414
           +  +                Q    +  L LNGN L +++       L  L + +N++  
Sbjct: 58  IKSV-------------QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD 104

Query: 415 LSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL 474
           LSS   + K L  L L HN + ++      ++P L  L L  N  ++ +       L KL
Sbjct: 105 LSSLK-DLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNN-KITDIT--VLSRLTKL 158

Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
           + L L    +  I       L  L+ L L+ NH++++       L NL  L+L +   +N
Sbjct: 159 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLN 214

Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFT 594
             +     L     +  +   L T +    +   +   +    L    NE++++F    T
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYE-KPNVKWHLPEFTNEVSFIFYQPVT 273

Query: 595 I 595
           I
Sbjct: 274 I 274

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 97.8 bits (244), Expect = 1e-22
 Identities = 41/249 (16%), Positives = 84/249 (33%), Gaps = 29/249 (11%)

Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
            PI               +L    +           +++ ++  +++   S+    +   
Sbjct: 12  TPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYL 67

Query: 266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
             +  L +  N++  +K  + L    L  + L  N++  +       L K+  L+L +N 
Sbjct: 68  PNVTKLFLNGNKLTDIKPLANLKN--LGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNG 123

Query: 326 LNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDL 385
           ++ +N           L ++  L LG N+             IT  +      KL +L L
Sbjct: 124 ISDIN-------GLVHLPQLESLYLGNNK-------------ITDITVLSRLTKLDTLSL 163

Query: 386 NGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTN 445
             N + ++        L NL +  N I+ L + A   K L  L+L             +N
Sbjct: 164 EDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA-GLKNLDVLELFSQECLNKPINHQSN 222

Query: 446 VPTLLHLNL 454
           +     +  
Sbjct: 223 LVVPNTVKN 231

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.9 bits (213), Expect = 1e-18
 Identities = 50/281 (17%), Positives = 101/281 (35%), Gaps = 41/281 (14%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
             + +    ++     +      +++ ++   ++        I S      L N+  L L
Sbjct: 26  TIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSD-------IKSVQGIQYLPNVTKLFL 75

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
           + N++  I+   L    NL  L +D N+   +   SL   + L+ LS+ +N I  +    
Sbjct: 76  NGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
            L Q  LE + L  N++T I     + L K+  L+L  N+++ +           GL K+
Sbjct: 132 HLPQ--LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP-------LAGLTKL 180

Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED--TLD 403
             L L  N             HI+        + L  L+L     +N       +    +
Sbjct: 181 QNLYLSKN-------------HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFT 444
            +   D  + T    + +     K ++  +  +     +F 
Sbjct: 228 TVKNTDGSLVTPEIIS-DDGDYEKPNVKWHLPEFTNEVSFI 267

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  108 bits (273), Expect = 4e-27
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
             +      L + +N+ T L ++ +  KL  L K++ S+N + ++E  AF     +  + 
Sbjct: 28  EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87

Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE 513
           L+ N  L ++    F  L+ L+ L L +  +  +    F  L +++ L L  N +T +  
Sbjct: 88  LTSN-RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146

Query: 514 MMFKNLLNLTYLDLSNN 530
             F  L +L+ L+L  N
Sbjct: 147 GAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  108 bits (272), Expect = 6e-27
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 2/130 (1%)

Query: 426 TKLDLSHNNLKELEPTA-FTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
            +L L++N    LE T  F  +P L  +N S N  ++ +  G F+    +  + L +  L
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRL 93

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
           +++    F  L +LK L L  N +T +    F  L ++  L L +N I  +  G+   L 
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 545 SMKRLDLSFN 554
           S+  L+L  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 98.2 bits (245), Expect = 2e-23
 Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 4/135 (2%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
              ELRL +N        + +T  F  L  LR ++ S+N+I  IEEG  +G   + E+ +
Sbjct: 33  YTAELRLNNN----EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
             NR  ++      G  +L+ L +  NRI  +  DSF+    +  + L  N++TT+  GA
Sbjct: 89  TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148

Query: 310 FNGLAKIHILNLGYN 324
           F+ L  +  LNL  N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 91.6 bits (228), Expect = 4e-21
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 475 EVLDLAATGLKSIP-QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV 533
             L L       +     F +L  L+ +  ++N +T+I E  F+    +  + L++N + 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 534 NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSF 593
           N++     GL S+K L L  N++T    D F        SS+  L+L +N++T + P +F
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFI-----GLSSVRLLSLYDNQITTVAPGAF 149

Query: 594 TIHSKLKTLKLAFNKFN 610
                L TL L  N FN
Sbjct: 150 DTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 88.6 bits (220), Expect = 4e-20
 Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 30/163 (18%)

Query: 497 NLKYLCLAHNHLTEIPEM-MFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
               L L +N  T +    +FK L  L  ++ SNN I ++  G+  G   +  + L+ N+
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 556 LTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615
           L   +   F         SL+ L L +N +T +   SF                      
Sbjct: 93  LENVQHKMFK-----GLESLKTLMLRSNRITCVGNDSFI--------------------- 126

Query: 616 LILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
              GLS ++ + L +NQ+ T+    +  L  L  LNL  N  +
Sbjct: 127 ---GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 77.8 bits (192), Expect = 2e-16
 Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 7/140 (5%)

Query: 542 GLP-SMKRLDLSFNKLTTFKGD-YFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKL 599
            +P     L L+ N+ T  +    F          L ++N +NN++T +   +F   S +
Sbjct: 29  HIPQYTAELRLNNNEFTVLEATGIFK-----KLPQLRKINFSNNKITDIEEGAFEGASGV 83

Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDA 659
             + L  N+      ++  GL  L+ + L +N++  + +  +  L  +R L+L +N I  
Sbjct: 84  NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143

Query: 660 ISETCFFNSSQLQIINLSFN 679
           ++   F     L  +NL  N
Sbjct: 144 VAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 76.6 bits (189), Expect = 5e-16
 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 218 VNLRILDLSDNQIKAIE-EGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
                L L++N+   +E  GI K    L ++   +N+ T I   +  G   +  + +  N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 336
           R+  ++   F     L+ ++LR NR+T +   +F GL+ + +L+L  N++      T   
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-----TVAP 146

Query: 337 GAFNGLAKIHILNLGYN 353
           GAF+ L  +  LNL  N
Sbjct: 147 GAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 76.2 bits (188), Expect = 8e-16
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 573 SSLEELNLNNNELTYLFPS-SFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
               EL LNNNE T L  +  F    +L+ +  + NK     +    G S + EI L++N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 632 QLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT 691
           +L+ +    +  L  L+ L L +N I  +    F   S +++++L  N++  +    F+T
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 692 -------FLYTN 696
                   L  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 17/144 (11%)

Query: 246 ELRMDHNRFTSIPSVSL-NGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTT 304
           ELR+++N FT + +  +      LR ++ + N+I  ++  +F     +  I+L  NRL  
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 305 IEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQ 364
           ++   F GL  +  L L  NR+  + +      +F GL+ + +L+L  N++  +    F 
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGN-----DSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 365 GTHITIFSFFQDFQKLKSLDLNGN 388
                          L +L+L  N
Sbjct: 151 T-----------LHSLSTLNLLAN 163

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  109 bits (274), Expect = 6e-27
 Identities = 51/158 (32%), Positives = 70/158 (44%), Gaps = 6/158 (3%)

Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
            KLDL    L  L    F  +  L  LNL  N  L +L  G FD L +L  L LA   L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLA 96

Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
           S+P   FD L  L  L L  N L  +P  +F  L  L  L L+ N + ++  G+   L +
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156

Query: 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
           ++ L LS N+L +     F+         L+ + L  N
Sbjct: 157 LQTLSLSTNQLQSVPHGAFD-----RLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 87.8 bits (218), Expect = 2e-19
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 5/160 (3%)

Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
           + L L    L  + +  F+ L  LT+L+L  N +  L  G    L  +  L L+ N+L +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL 618
                F+     + + L++L L  N+L  L    F   +KLK L+L  N+    P     
Sbjct: 98  LPLGVFD-----HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 619 GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
            L+ LQ + LS NQL+++    +  L +L+ + L  N  D
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 81.3 bits (201), Expect = 2e-17
 Identities = 56/227 (24%), Positives = 80/227 (35%), Gaps = 65/227 (28%)

Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNG 312
              S+PS     P     L +    + TL   +F     L  + L  N+L T+  G F+ 
Sbjct: 25  SLDSVPS---GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81

Query: 313 LAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFS 372
           L ++  L L  N+L  L       G F+ L ++  L LG N+L  L S  F         
Sbjct: 82  LTELGTLGLANNQLASLPL-----GVFDHLTQLDKLYLGGNQLKSLPSGVF--------- 127

Query: 373 FFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSH 432
                                      D L  L                     +L L+ 
Sbjct: 128 ---------------------------DRLTKL--------------------KELRLNT 140

Query: 433 NNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
           N L+ +   AF  +  L  L+LS N  L S+P G FD L KL+ + L
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITL 186

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 79.4 bits (196), Expect = 1e-16
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 9/159 (5%)

Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
            +   LDL    +  + +   +G   L  L +D+N+  ++ +   +    L  L +A N+
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
           + +L    F     L+++ L GN+L ++  G F+ L K+  L L  N+L  + +     G
Sbjct: 95  LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-----G 149

Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQG----THITIFS 372
           AF+ L  +  L+L  N+L  +    F        IT+F 
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 77.8 bits (192), Expect = 4e-16
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 11/166 (6%)

Query: 188 RDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLEL 247
            DT ++L L             S + F GL  L  L+L  NQ++ +  G+      L  L
Sbjct: 35  ADT-EKLDLQSTGLAT-----LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88

Query: 248 RMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEG 307
            + +N+  S+P    +    L  L +  N++ +L +  F     L+ + L  N+L +I  
Sbjct: 89  GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148

Query: 308 GAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYN 353
           GAF+ L  +  L+L  N+L      +   GAF+ L K+  + L  N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQ-----SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAF 606
           ++LDL    L T     F   +K     L  LNL+ N+L  L    F   ++L TL LA 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTK-----LTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92

Query: 607 NKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFF 666
           N+    P  +   L+ L ++ L  NQLK++    +  L +L++L LN N + +I    F 
Sbjct: 93  NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 667 NSSQLQIINLSFNRLEKLPERLFNT-------FLYTN 696
             + LQ ++LS N+L+ +P   F+         L+ N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score =  106 bits (267), Expect = 1e-25
 Identities = 57/276 (20%), Positives = 93/276 (33%), Gaps = 19/276 (6%)

Query: 392 NLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLH 451
                 L   +D           + S +L    +    +    L          +  L  
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA--LRVLGISGLQE 99

Query: 452 LNLSRNAHLSSLPVGGFD-PLKKLEVLDLA----ATGLKSIPQYQFDELLNLKYLCLAHN 506
           L L       + P    +     L +L+L     AT    + + Q      LK L +A  
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 507 HLTEIPEMMFKNLLNLTYLDLSNNNIVN----LRVGSLYGLPSMKRLDLSFNKLTTFKGD 562
           H         +    L+ LDLS+N  +     +        P+++ L L    + T  G 
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 563 YFNTKSKPNTSSLEELNLNNNELTYLFP-SSFTIHSKLKTLKLAFNKFNYFPKELILGLS 621
                +      L+ L+L++N L       S    S+L +L L+F      PK L    +
Sbjct: 220 CSALAAAR--VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL---PA 274

Query: 622 YLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNI 657
            L  +DLS N+L      D   LP++  L+L  N  
Sbjct: 275 KLSVLDLSYNRLDRNPSPD--ELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 91.5 bits (227), Expect = 2e-20
 Identities = 46/262 (17%), Positives = 90/262 (34%), Gaps = 25/262 (9%)

Query: 449 LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLN---LKYLCLAH 505
           L +L    +                L+ L + A  + S   +    +L    L+ L L +
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 506 NHLT--EIPEMMFKNLLNLTYLDLSNNNIVNLRVG----SLYGLPSMKRLDLSFNKLTTF 559
             +T    P ++     +L  L+L N +             +  P +K L ++      F
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164

Query: 560 KGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIH----SKLKTLKLAFNKFNYFPKE 615
             +           +L  L+L++N           +       L+ L L           
Sbjct: 165 SCEQVR-----VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 616 ---LILGLSYLQEIDLSNNQLKTI-DDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQL 671
              L      LQ +DLS+N L+         +  +L  LNL+   +  + +      ++L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKL 276

Query: 672 QIINLSFNRLEKLPERLFNTFL 693
            +++LS+NRL++ P       +
Sbjct: 277 SVLDLSYNRLDRNPSPDELPQV 298

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.4 bits (219), Expect = 3e-19
 Identities = 50/241 (20%), Positives = 78/241 (32%), Gaps = 21/241 (8%)

Query: 333 TFQGGAFNGLAKIHILN-LGYNRLNKLNSDTFQGTHITIFSFFQ-DFQKLKSLDLNGNFL 390
           T +            L  LG + L +L  +  + T        +     L  L+L     
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133

Query: 391 INLES------TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAF 443
              ++        L+  L  L++        S   +  +  L+ LDLS N          
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193

Query: 444 TNV----PTLLHLNLSRN--AHLSSLPVGGFDPLKKLEVLDLAATGLKSIP-QYQFDELL 496
                  PTL  L L        S +         +L+ LDL+   L+        D   
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
            L  L L+   L ++P+ +   L   + LDLS N +   R  S   LP +  L L  N  
Sbjct: 254 QLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLD--RNPSPDELPQVGNLSLKGNPF 308

Query: 557 T 557
            
Sbjct: 309 L 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 87.3 bits (216), Expect = 6e-19
 Identities = 44/258 (17%), Positives = 77/258 (29%), Gaps = 26/258 (10%)

Query: 345 IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED---- 400
             I+     +   + +       +           L+ L L    +       L +    
Sbjct: 62  TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121

Query: 401 TLDNLNVRDNQITTLSS-----SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
            L+ LN+R+    T  +            L  L ++  +            P L  L+LS
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181

Query: 456 RNAHLS------SLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT 509
            N  L       +L    F  L+ L + +        +        + L+ L L+HN L 
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241

Query: 510 EIP-EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKS 568
           +            L  L+LS   +  +  G       +  LDLS+N+L           S
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNP-------S 291

Query: 569 KPNTSSLEELNLNNNELT 586
                 +  L+L  N   
Sbjct: 292 PDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 2e-15
 Identities = 50/265 (18%), Positives = 90/265 (33%), Gaps = 17/265 (6%)

Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
             +AD       ++ + L+   +      +      + +L +   +   L +    G A 
Sbjct: 53  DTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112

Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL--ESTG 397
             L +    +L    L  ++  T       +  +      LK L +     +N   E   
Sbjct: 113 PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL--KPGLKVLSIAQAHSLNFSCEQVR 170

Query: 398 LEDTLDNLNVRDNQITT---LSSSALNYKL--LTKLDLSHNNLKELEPTA---FTNVPTL 449
           +   L  L++ DN       L S+    K   L  L L +  ++               L
Sbjct: 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230

Query: 450 LHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT 509
             L+LS N+   +      D   +L  L+L+ TGLK +P+        L  L L++N L 
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLD 287

Query: 510 EIPEMMFKNLLNLTYLDLSNNNIVN 534
             P      L  +  L L  N  ++
Sbjct: 288 RNPSPDE--LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 5e-13
 Identities = 39/260 (15%), Positives = 79/260 (30%), Gaps = 26/260 (10%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQI--KAIEEGILKGCDNLLEL 247
           +L+ L +        +  +F      G+  L+ L L + ++   A    +     +L  L
Sbjct: 69  SLKRLTVRAARIPSRI--LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126

Query: 248 RMDHNRFT----SIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT 303
            + +  +      +  +       L++LS+A         +       L  + L  N   
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

Query: 304 T----IEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLN 359
                I          + +L L    +   +             ++  L+L +N L    
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA--LAAARVQLQGLDLSHNSL---- 240

Query: 360 SDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA 419
                              +L SL+L+   L  +   GL   L  L++  N++    S  
Sbjct: 241 ------RDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLPAKLSVLDLSYNRLDRNPSP- 292

Query: 420 LNYKLLTKLDLSHNNLKELE 439
                +  L L  N   + E
Sbjct: 293 DELPQVGNLSLKGNPFLDSE 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.5 bits (162), Expect = 6e-12
 Identities = 34/239 (14%), Positives = 82/239 (34%), Gaps = 31/239 (12%)

Query: 165 PIRRLDFSGNALRRLSDK-LFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRIL 223
            ++ L      +   +   L       L  L L +  +    +   +  +      L++L
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVL 154

Query: 224 DLSDNQIKAIEEGILKGCDNLLELRMDHNRFTS----IPSVSLNGPRALRILSMAYNRIG 279
            ++           ++    L  L +  N        I ++       L++L++    + 
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 280 TLK---ADSFLSQRWLERIILRGNRLTTI-EGGAFNGLAKIHILNLGYNRLNKLNSDTFQ 335
           T     +    ++  L+ + L  N L       + +  ++++ LNL +  L ++      
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA 274

Query: 336 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLE 394
                   K+ +L+L YNRL++                  +  ++ +L L GN  ++ E
Sbjct: 275 --------KLSVLDLSYNRLDRN-------------PSPDELPQVGNLSLKGNPFLDSE 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 28/171 (16%), Positives = 48/171 (28%), Gaps = 9/171 (5%)

Query: 520 LNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELN 579
            N +      ++  N    +   L    R      K    + D         + SL+ L 
Sbjct: 15  CNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLT 74

Query: 580 LNNNELTYLFPSSFTI---HSKLKTLKLAFNKFNY--FPKELILGLSYLQEIDLSNNQLK 634
           +    +              S L+ L L   +      P  L      L  ++L N    
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 635 TIDDYDYG----YLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRL 681
           T D +         P L+ L++   +    S         L  ++LS N  
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  105 bits (264), Expect = 2e-25
 Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 19/185 (10%)

Query: 348 LNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNV 407
            NL    +    +               +   +  +  N + + +++       +  L +
Sbjct: 24  ANLKKKSVTDAVT-------------QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLAL 70

Query: 408 RDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV 465
             N++  +S+     +L  LT L L+ N L+ L    F  +  L  L L  N  L SLP 
Sbjct: 71  GGNKLHDISALK---ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPD 126

Query: 466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL 525
           G FD L  L  L+LA   L+S+P+  FD+L NL  L L++N L  +PE +F  L  L  L
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186

Query: 526 DLSNN 530
            L  N
Sbjct: 187 RLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  104 bits (262), Expect = 4e-25
 Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 19/208 (9%)

Query: 381 KSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEP 440
              +L    + +  +    +++D +   ++ I ++         +  L L  N L ++  
Sbjct: 22  IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VRYLALGGNKLHDIS- 79

Query: 441 TAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKY 500
            A   +  L +L L+ N  L SLP G FD L  L+ L L    L+S+P   FD+L NL Y
Sbjct: 80  -ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137

Query: 501 LCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFK 560
           L LAHN L  +P+ +F  L NLT LDLS N + +L  G    L  +K L L  N+L    
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL---- 193

Query: 561 GDYFNTKSKP-----NTSSLEELNLNNN 583
                 KS P       +SL+ + L++N
Sbjct: 194 ------KSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  100 bits (250), Expect = 1e-23
 Identities = 60/230 (26%), Positives = 93/230 (40%), Gaps = 36/230 (15%)

Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
            K +L   ++ +       N    +  N   N+ + S+   G   L  +  L L    L 
Sbjct: 22  IKANLKKKSVTDAVTQNELNSIDQIIAN---NSDIKSVQ--GIQYLPNVRYLALGGNKLH 76

Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
            I      EL NL YL L  N L  +P  +F  L NL  L L  N + +L  G       
Sbjct: 77  DISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV------ 128

Query: 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLA 605
                  F+KLT                 L  LNL +N+L  L    F   + L  L L+
Sbjct: 129 -------FDKLTN----------------LTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165

Query: 606 FNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
           +N+    P+ +   L+ L+++ L  NQLK++ D  +  L  L+ + L++N
Sbjct: 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 21/206 (10%)

Query: 150 GHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIF 209
             QI P   F+ +     + +    ++           ++ L  +         + + I 
Sbjct: 9   IKQIFPDDAFAETI----KANLKKKSVTDA------VTQNELNSIDQIIA----NNSDIK 54

Query: 210 STSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALR 269
           S      L N+R L L  N++  I    LK   NL  L +  N+  S+P+   +    L+
Sbjct: 55  SVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112

Query: 270 ILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKL 329
            L +  N++ +L    F     L  + L  N+L ++  G F+ L  +  L+L YN+L  L
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172

Query: 330 NSDTFQGGAFNGLAKIHILNLGYNRL 355
                  G F+ L ++  L L  N+L
Sbjct: 173 PE-----GVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 77.0 bits (190), Expect = 9e-16
 Identities = 49/244 (20%), Positives = 96/244 (39%), Gaps = 45/244 (18%)

Query: 460 LSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNL 519
               P   F    K    +L    +        +EL ++  +   ++ +  +     + L
Sbjct: 10  KQIFPDDAFAETIKA---NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYL 62

Query: 520 LNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELN 579
            N+ YL L  N + ++                   +LT                +L  L 
Sbjct: 63  PNVRYLALGGNKLHDISA---------------LKELT----------------NLTYLI 91

Query: 580 LNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDY 639
           L  N+L  L    F   + LK L L  N+    P  +   L+ L  ++L++NQL+++   
Sbjct: 92  LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151

Query: 640 DYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT-------F 692
            +  L  L +L+L+ N + ++ E  F   +QL+ + L  N+L+ +P+ +F+        +
Sbjct: 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211

Query: 693 LYTN 696
           L+ N
Sbjct: 212 LHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 167 RRLDFSGNALRRLS--DKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILD 224
           R L   GN L  +S   +L +     L  L L  N    SL        F  L NL+ L 
Sbjct: 66  RYLALGGNKLHDISALKELTN-----LTYLILTGNQLQ-SL----PNGVFDKLTNLKELV 115

Query: 225 LSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKAD 284
           L +NQ++++ +G+     NL  L + HN+  S+P    +    L  L ++YN++ +L   
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175

Query: 285 SF--LSQRWLERIILRGNRLTTIEGGAFNGLAKI-HI 318
            F  L+Q  L+ + L  N+L ++  G F+ L  + +I
Sbjct: 176 VFDKLTQ--LKDLRLYQNQLKSVPDGVFDRLTSLQYI 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 99.7 bits (249), Expect = 1e-23
 Identities = 49/280 (17%), Positives = 89/280 (31%), Gaps = 50/280 (17%)

Query: 408 RDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGG 467
           R   I  +           K +L   ++ +L       +  + + N   + ++ SL   G
Sbjct: 5   RPTPINQVFPDP-GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS-NIQSLA--G 58

Query: 468 FDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDL 527
                 L+ L L+   +  +      +L  L+ L +  N L  +  +       L+ L L
Sbjct: 59  MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI---PSACLSRLFL 113

Query: 528 SNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTY 587
            NN + +    SL  L +++ L +  NKL +              S LE L+L+ NE+T 
Sbjct: 114 DNNELRDTD--SLIHLKNLEILSIRNNKLKSIVM-------LGFLSKLEVLDLHGNEITN 164

Query: 588 LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRL 647
                                        +  L  +  IDL+  +          Y P L
Sbjct: 165 TGG--------------------------LTRLKKVNWIDLTGQKCVNEPVK---YQPEL 195

Query: 648 RKLN-LNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686
              N + + +   IS     N        + +       E
Sbjct: 196 YITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDE 235

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 97.0 bits (242), Expect = 1e-22
 Identities = 49/240 (20%), Positives = 83/240 (34%), Gaps = 18/240 (7%)

Query: 355 LNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITT 414
           L            +T     ++   +++ + + + + +L        L  L++  NQI+ 
Sbjct: 18  LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD 77

Query: 415 LSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL 474
           LS    +   L +L ++ N LK L          L  L L  N  L          LK L
Sbjct: 78  LSPLK-DLTKLEELSVNRNRLKNLNGIPSAC---LSRLFLDNN-ELRDTD--SLIHLKNL 130

Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
           E+L +    LKSI       L  L+ L L  N +T         L  + ++DL+    VN
Sbjct: 131 EILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVN 186

Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFT 594
             V           L ++ N +    G + +     N  S  +  +      Y    S+ 
Sbjct: 187 EPVKYQ------PELYIT-NTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYK 239

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 46/250 (18%), Positives = 82/250 (32%), Gaps = 26/250 (10%)

Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
            PI       GL N    +L    +  +     K    +     D++   S+    +   
Sbjct: 7   TPINQVFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA--GMQFF 62

Query: 266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR 325
             L+ L +++N+I  L     L++  LE + +  NRL  + G     L     L L  N 
Sbjct: 63  TNLKELHLSHNQISDLSPLKDLTK--LEELSVNRNRLKNLNGIPSACL---SRLFLDNNE 117

Query: 326 LNKLNSDTFQGGAFNGLAKIHILNLGYNR---------LNKLNSDTFQGTHITIFSFFQD 376
           L   +S          L  + IL++  N+         L+KL      G  IT       
Sbjct: 118 LRDTDS-------LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTR 170

Query: 377 FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNL 435
            +K+  +DL G   +N       +      V+D     +S   + N        +     
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELP 230

Query: 436 KELEPTAFTN 445
              +  ++  
Sbjct: 231 VYTDEVSYKF 240

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 33/233 (14%)

Query: 225 LSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKAD 284
                I  +      G  N ++  +     T +  VS      ++  +   + I +L   
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLAGM 59

Query: 285 SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAK 344
            F +   L+ + L  N+++ +       L K+  L++  NRL  LN            A 
Sbjct: 60  QFFTN--LKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLN--------GIPSAC 107

Query: 345 IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN 404
           +  L L  N L                      + L+ L +  N L ++   G    L+ 
Sbjct: 108 LSRLFLDNNELRDT-------------DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEV 154

Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
           L++  N+IT         K +  +DL+                 L   N  ++
Sbjct: 155 LDLHGNEITNTGGLT-RLKKVNWIDLTGQKCVNEPVKYQPE---LYITNTVKD 203

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 15/112 (13%)

Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
             L  + N L+ L+    +     L  L L +N        +  T     L NL IL + 
Sbjct: 88  EELSVNRNRLKNLNGIPSA----CLSRLFLDNNE-------LRDTDSLIHLKNLEILSIR 136

Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
           +N++K+I    L     L  L +  N  T+     L   + +  + +   + 
Sbjct: 137 NNKLKSIVM--LGFLSKLEVLDLHGNEITNTG--GLTRLKKVNWIDLTGQKC 184

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 99.3 bits (248), Expect = 4e-22
 Identities = 83/425 (19%), Positives = 145/425 (34%), Gaps = 76/425 (17%)

Query: 316 IHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQ 375
           I  L++    L    SD         L +  ++ L    L      T       I S  +
Sbjct: 5   IQSLDIQCEEL----SDARWAELLPLLQQCQVVRLDDCGL------TEARCKD-ISSALR 53

Query: 376 DFQKLKSLDLNGNFL----INLESTGLED---TLDNLNVRDNQITTLSSSAL-----NYK 423
               L  L+L  N L    ++    GL+     +  L++++  +T      L        
Sbjct: 54  VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 113

Query: 424 LLTKLDLSHNNL-----KELEPTAFTNVPTLLHLNLSRN-------AHLSSLPVGGFDPL 471
            L +L LS N L     + L          L  L L            L+S+        
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV----LRAK 169

Query: 472 KKLEVLDLA-----ATGLKSIPQYQFDELLNLKYLCLAHNHLTE-----IPEMMFKNLLN 521
              + L ++       G++ + Q   D    L+ L L    +T      +  +   +  +
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI-VASKAS 228

Query: 522 LTYLDLSNNNI-----VNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLE 576
           L  L L +N +       L  G L+    ++ L +    +T  KG     +      SL+
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA-KGCGDLCRVLRAKESLK 287

Query: 577 ELNLNNNELT-----YLFPSSFTIHSKLKTLKLAFNKF-NYFPKELILGLSY---LQEID 627
           EL+L  NEL       L  +      +L++L +    F           L+    L E+ 
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347

Query: 628 LSNNQL-----KTIDDYDYGYLPRLRKLNLNNNNID-----AISETCFFNSSQLQIINLS 677
           +SNN+L     + +          LR L L + ++      +++ T   N S L+ ++LS
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS-LRELDLS 406

Query: 678 FNRLE 682
            N L 
Sbjct: 407 NNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 97.3 bits (243), Expect = 2e-21
 Identities = 88/501 (17%), Positives = 154/501 (30%), Gaps = 98/501 (19%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQI-----KAIEEGILKGCDNL 244
            +Q L +      D+            L   +++ L D  +     K I    L+    L
Sbjct: 4   DIQSLDIQCEELSDARWAELL----PLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPAL 58

Query: 245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTT 304
            EL +  N           G   +  +         L+  S      ++++ L+   LT 
Sbjct: 59  AELNLRSNEL---------GDVGVHCVLQG------LQTPSCK----IQKLSLQNCCLTG 99

Query: 305 IEG-----GAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLN 359
             G          L  +  L+L  N L          G  +   ++  L L Y  L    
Sbjct: 100 -AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL---- 154

Query: 360 SDTFQGTHITIFSFFQDFQKLKSLDLNGNFL----INLESTGLED---TLDNLNVRDNQI 412
             +       + S  +     K L ++ N +    + +   GL+D    L+ L +    +
Sbjct: 155 --SAASCE-PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211

Query: 413 TTLSSSAL-----NYKLLTKLDLSHNNL-----KELEPTAFTNVPTLLHLNLSRN----- 457
           T+ +   L     +   L +L L  N L      EL P        L  L +        
Sbjct: 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271

Query: 458 --AHLSSLPVGGFDPLKKLEVLDLA-----ATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
               L           + L+ L LA       G + + +   +    L+ L +     T 
Sbjct: 272 GCGDLCR----VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327

Query: 511 -----IPEMMFKNLLNLTYLDLSNNNIVNLRVGSL-----YGLPSMKRLDLSFNKLTTFK 560
                   ++ +N   L  L +SNN + +  V  L          ++ L L+   ++   
Sbjct: 328 ACCSHFSSVLAQN-RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386

Query: 561 GDYFNTKSKPNTSSLEELNLNNNELT-----YLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615
                     N  SL EL+L+NN L       L  S       L+ L L    ++     
Sbjct: 387 CSSLAATLLANH-SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE--- 442

Query: 616 LILGLSYLQEIDLSNNQLKTI 636
                  LQ ++     L+ I
Sbjct: 443 ---MEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 97.0 bits (242), Expect = 2e-21
 Identities = 82/466 (17%), Positives = 145/466 (31%), Gaps = 75/466 (16%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGD-SLNPIFSTSEFHGLVNLRILD 224
           I+ LD     L         P     Q +RL D    +     I S         L  L+
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA--LRVNPALAELN 62

Query: 225 LSDNQI-----KAIEEGILKGCDNLLELRMDHNRFT-----SIPSVSLNGPRALRILSMA 274
           L  N++       + +G+      + +L + +   T      + S  L     L+ L ++
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLS 121

Query: 275 YNRIG----TLKADSFLSQRW-LERIILRGNRLTTIE----GGAFNGLAKIHILNLGYNR 325
            N +G     L  +  L  +  LE++ L    L+                   L +  N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 326 LNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDL 385
           +N+        G  +   ++  L L    +      T       +         L+ L L
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGV------TSDNCRD-LCGIVASKASLRELAL 234

Query: 386 NGNFL----INLESTGLED---TLDNLNVRDNQITTLSSSAL-----NYKLLTKLDLSHN 433
             N L    +     GL      L  L + +  IT      L       + L +L L+ N
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294

Query: 434 NLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFD 493
            L                     +     L     +P  +LE L + +    +     F 
Sbjct: 295 ELG--------------------DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334

Query: 494 ELL----NLKYLCLAHNHLT-----EIPEMMFKNLLNLTYLDLSNNNIVNLRVGS----L 540
            +L     L  L +++N L      E+ + + +    L  L L++ ++ +    S    L
Sbjct: 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394

Query: 541 YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT 586
               S++ LDLS N L            +     LE+L L +   +
Sbjct: 395 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 84.6 bits (210), Expect = 2e-17
 Identities = 61/347 (17%), Positives = 105/347 (30%), Gaps = 67/347 (19%)

Query: 378 QKLKSLDLNGNFLINLESTGLEDTLDN---LNVRDNQITTLSSSAL-----NYKLLTKLD 429
             ++SLD+    L +     L   L     + + D  +T      +         L +L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 430 LSHNNL-----KELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
           L  N L       +     T    +  L+L        L   G   L         ++ L
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC----CLTGAGCGVL---------SSTL 109

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTE-----IPEMMFKNLLNLTYLDLSNNNIVNLRVGS 539
           +++P         L+ L L+ N L +     + E +      L  L L   ++       
Sbjct: 110 RTLP--------TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161

Query: 540 ----LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTY----LFPS 591
               L   P  K L +S N +            K +   LE L L +  +T         
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221

Query: 592 SFTIHSKLKTLKLAFNKF-----NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYL-- 644
                + L+ L L  NK            L+   S L+ + +       I     G L  
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG---ITAKGCGDLCR 278

Query: 645 -----PRLRKLNLNNNNID-----AISETCFFNSSQLQIINLSFNRL 681
                  L++L+L  N +       + ET      QL+ + +     
Sbjct: 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 91.7 bits (228), Expect = 3e-21
 Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 1/129 (0%)

Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
           T LDL  N+LK L    F  + +L  L L  N  L SLP G F+ L  L  L+L+   L+
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
           S+P   FD+L  LK L L  N L  +P+ +F  L  L  L L  N + ++  G    L S
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149

Query: 546 MKRLDLSFN 554
           ++ + L  N
Sbjct: 150 LQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 19/137 (13%)

Query: 348 LNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED---TLDN 404
           L+L  N L  L +  F                L  L L GN L +L + G+ +   +L  
Sbjct: 33  LDLETNSLKSLPNGVFDE-----------LTSLTQLYLGGNKLQSLPN-GVFNKLTSLTY 80

Query: 405 LNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSS 462
           LN+  NQ+ +L +   + KL  L +L L+ N L+ L    F  +  L  L L +N  L S
Sbjct: 81  LNLSTNQLQSLPNGVFD-KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKS 138

Query: 463 LPVGGFDPLKKLEVLDL 479
           +P G FD L  L+ + L
Sbjct: 139 VPDGVFDRLTSLQYIWL 155

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 53/158 (33%), Positives = 71/158 (44%), Gaps = 29/158 (18%)

Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
             LDL    LKS+P   FDEL +L  L L  N L  +P  +F  L +LTYL+LS N + +
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFT 594
           L  G              F+KLT                 L+EL LN N+L  L    F 
Sbjct: 91  LPNGV-------------FDKLT----------------QLKELALNTNQLQSLPDGVFD 121

Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
             ++LK L+L  N+    P  +   L+ LQ I L +N 
Sbjct: 122 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 10/157 (6%)

Query: 528 SNNNIVNLRVGSLYGLPS-----MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN 582
            +   V         +P+        LDL  N L +     F+  +      L +L L  
Sbjct: 7   CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTS-----LTQLYLGG 61

Query: 583 NELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYG 642
           N+L  L    F   + L  L L+ N+    P  +   L+ L+E+ L+ NQL+++ D  + 
Sbjct: 62  NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD 121

Query: 643 YLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
            L +L+ L L  N + ++ +  F   + LQ I L  N
Sbjct: 122 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 7/131 (5%)

Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
           +    L+L  N L  L    F   + L  L L  NK    P  +   L+ L  ++LS NQ
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 633 LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT- 691
           L+++ +  +  L +L++L LN N + ++ +  F   +QL+ + L  N+L+ +P+ +F+  
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147

Query: 692 ------FLYTN 696
                 +L+ N
Sbjct: 148 TSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
            L ++ N   S+P+   +   +L  L +  N++ +L    F     L  + L  N+L ++
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 306 EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 365
             G F+ L ++  L L  N+L  L       G F+ L ++  L L  N+L  +    F  
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPD-----GVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146

Query: 366 ----THITIFS 372
                +I +  
Sbjct: 147 LTSLQYIWLHD 157

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNG 312
             TS+P+     P     L +  N + +L    F     L ++ L GN+L ++  G FN 
Sbjct: 18  GRTSVPT---GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK 74

Query: 313 LAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKL 358
           L  +  LNL  N+L  L +     G F+ L ++  L L  N+L  L
Sbjct: 75  LTSLTYLNLSTNQLQSLPN-----GVFDKLTQLKELALNTNQLQSL 115

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 9/137 (6%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
               L L  N              F  L +L  L L  N+++++  G+     +L  L +
Sbjct: 29  QTTYLDLETNSLKS-----LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSF--LSQRWLERIILRGNRLTTIEG 307
             N+  S+P+   +    L+ L++  N++ +L    F  L+Q  L+ + L  N+L ++  
Sbjct: 84  STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ--LKDLRLYQNQLKSVPD 141

Query: 308 GAFNGLAKIHILNLGYN 324
           G F+ L  +  + L  N
Sbjct: 142 GVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 25/95 (26%), Positives = 49/95 (51%)

Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN 654
           I ++   L L  N     P  +   L+ L ++ L  N+L+++ +  +  L  L  LNL+ 
Sbjct: 26  IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85

Query: 655 NNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
           N + ++    F   +QL+ + L+ N+L+ LP+ +F
Sbjct: 86  NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF 120

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 89.6 bits (223), Expect = 9e-21
 Identities = 28/185 (15%), Positives = 72/185 (38%), Gaps = 10/185 (5%)

Query: 377 FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK 436
           F+   +  L  +   N+    + ++L  + + +  +T L+        +  L +++ +  
Sbjct: 22  FKAYLNGLLGQSSTANITEAQM-NSLTYITLANINVTDLTGIE-YAHNIKDLTINNIHAT 79

Query: 437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELL 496
              P   + +  L  L +     ++S  +     L  L +LD++ +        + + L 
Sbjct: 80  NYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 497 NLKYLCLAHNH-LTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
            +  + L++N  +T+I     K L  L  L++  + + + R   +   P + +L      
Sbjct: 137 KVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT 192

Query: 556 LTTFK 560
           +   K
Sbjct: 193 IGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 87.7 bits (218), Expect = 6e-20
 Identities = 31/191 (16%), Positives = 76/191 (39%), Gaps = 12/191 (6%)

Query: 470 PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529
           P    +       G  S       ++ +L Y+ LA+ ++T++     +   N+  L ++N
Sbjct: 18  PDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 530 NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLF 589
            +  N     + GL +++RL +    +T+ K    +       +SL  L+++++      
Sbjct: 76  IHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLS-----GLTSLTLLDISHSAHDDSI 128

Query: 590 PSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRK 649
            +      K+ ++ L++N        L   L  L+ +++  + +      +    P+L +
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMPLK-TLPELKSLNIQFDGVHDYRGIED--FPKLNQ 185

Query: 650 LNLNNNNIDAI 660
           L   +  I   
Sbjct: 186 LYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 40/208 (19%), Positives = 77/208 (37%), Gaps = 20/208 (9%)

Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
           +    A+    +IP   F   LN     L  +    I E     + +LTY+ L+N N+ +
Sbjct: 5   QTGLKASQDNVNIPDSTFKAYLNG---LLGQSSTANITE---AQMNSLTYITLANINVTD 58

Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFT 594
           L    +    ++K L ++    T +             S+LE L +   ++T     + +
Sbjct: 59  LT--GIEYAHNIKDLTINNIHATNYNP-------ISGLSNLERLRIMGKDVTSDKIPNLS 109

Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS-NNQLKTIDDYDYGYLPRLRKLNLN 653
             + L  L ++ +  +      I  L  +  IDLS N  +  I       LP L+ LN+ 
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQ 167

Query: 654 NNNIDAISETCFFNSSQLQIINLSFNRL 681
            + +         +  +L  +      +
Sbjct: 168 FDGVHDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 82.3 bits (204), Expect = 3e-18
 Identities = 31/190 (16%), Positives = 65/190 (34%), Gaps = 16/190 (8%)

Query: 421 NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA 480
            +K      L  ++   +      +   L ++ L+   +++ L   G +    ++ L + 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNS---LTYITLANI-NVTDLT--GIEYAHNIKDLTIN 74

Query: 481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL 540
                +        L NL+ L +    +T         L +LT LD+S++   +  +  +
Sbjct: 75  NIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 541 YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLK 600
             LP +  +DLS+N   T      +         L+ LN+  + +            KL 
Sbjct: 133 NTLPKVNSIDLSYNGAIT------DIMPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLN 184

Query: 601 TLKLAFNKFN 610
            L        
Sbjct: 185 QLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 5/171 (2%)

Query: 342 LAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDT 401
           L +    N+   ++N L   T    ++T  +  +    +K L +N     N         
Sbjct: 30  LGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSN 89

Query: 402 LDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHL 460
           L+ L +    +T+     L     LT LD+SH+   +   T    +P +  ++LS N  +
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 461 SSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEI 511
           + +       L +L+ L++   G+        ++   L  L      +   
Sbjct: 150 TDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 23/199 (11%), Positives = 67/199 (33%), Gaps = 22/199 (11%)

Query: 242 DNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNR 301
                        +S  +++     +L  +++A   +  L    +     ++ + +    
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHN--IKDLTINNIH 77

Query: 302 LTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSD 361
            T       +GL+ +  L +    +             +GL  + +L++ ++  +     
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVTSDKIP-----NLSGLTSLTLLDISHSAHD----- 125

Query: 362 TFQGTHITIFSFFQDFQKLKSLDLNGNFLI-NLESTGLEDTLDNLNVRDNQITTLSSSAL 420
                  +I +      K+ S+DL+ N  I ++        L +LN++ + +        
Sbjct: 126 ------DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIE- 178

Query: 421 NYKLLTKLDLSHNNLKELE 439
           ++  L +L      +   +
Sbjct: 179 DFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 32/197 (16%), Positives = 69/197 (35%), Gaps = 24/197 (12%)

Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
                   L  +    I E  +    +L  + + +   T +    +     ++ L++   
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMN---SLTYITLANINVTDLTG--IEYAHNIKDLTINNI 76

Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 336
                   S LS   LER+ + G  +T+ +    +GL  + +L++ ++  +         
Sbjct: 77  HATNYNPISGLSN--LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT---- 130

Query: 337 GAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLEST 396
              N L K++ ++L YN              IT     +   +LKSL++  + + +    
Sbjct: 131 -KINTLPKVNSIDLSYNGA------------ITDIMPLKTLPELKSLNIQFDGVHDYRGI 177

Query: 397 GLEDTLDNLNVRDNQIT 413
                L+ L      I 
Sbjct: 178 EDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 20/140 (14%), Positives = 50/140 (35%), Gaps = 12/140 (8%)

Query: 191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMD 250
           +++L + +           + +   GL NL  L +    + + +   L G  +L  L + 
Sbjct: 68  IKDLTINNI-------HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 251 HNRFTSIPSVSLNGPRALRILSMAYN-RIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
           H+         +N    +  + ++YN  I  +     L +  L+ + ++ + +    G  
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE--LKSLNIQFDGVHDYRG-- 176

Query: 310 FNGLAKIHILNLGYNRLNKL 329
                K++ L      +   
Sbjct: 177 IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 11/113 (9%), Positives = 35/113 (30%), Gaps = 7/113 (6%)

Query: 570 PNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS 629
               +     L  +    +  +       L  + LA           I     ++++ ++
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMN---SLTYITLANINVTDL--TGIEYAHNIKDLTIN 74

Query: 630 NNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682
           N      +      L  L +L +   ++ +         + L ++++S +  +
Sbjct: 75  NIHATNYNPI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 90.1 bits (224), Expect = 1e-20
 Identities = 48/129 (37%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
             L L  N + +LEP  F ++  L  L L  N  L +LPVG FD L +L VLDL    L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
            +P   FD L++LK L +  N LTE+P    + L +LT+L L  N + ++  G+   L S
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 546 MKRLDLSFN 554
           +    L  N
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 79.0 bits (195), Expect = 1e-16
 Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 452 LNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEI 511
           L L  N  ++ L  G FD L  L+ L L +  L ++P   FD L  L  L L  N LT +
Sbjct: 45  LYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 512 PEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPN 571
           P  +F  L++L  L +  N +  L  G +  L  +  L L  N+L +     F+      
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFD-----R 157

Query: 572 TSSLEELNLNNN 583
            SSL    L  N
Sbjct: 158 LSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 64.7 bits (158), Expect = 7e-12
 Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 30/157 (19%)

Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
           + L L  N +T++   +F +L+NL  L L +N +  L VG              F+ LT 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV-------------FDSLTQ 89

Query: 559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL 618
                           L  L+L  N+LT L  + F     LK L +  NK    P+  I 
Sbjct: 90  ----------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IE 132

Query: 619 GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
            L++L  + L  NQLK+I    +  L  L    L  N
Sbjct: 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 38/165 (23%)

Query: 293 ERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGY 352
           + + L  N++T +E G F+ L  +  L LG N+L  L       G F+ L ++ +L+LG 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV-----GVFDSLTQLTVLDLGT 97

Query: 353 NRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQI 412
           N+L  L S  F    +           LK L +                        N++
Sbjct: 98  NQLTVLPSAVFD--RLV---------HLKELFMC----------------------CNKL 124

Query: 413 TTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
           T L         LT L L  N LK +   AF  + +L H  L  N
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 8/106 (7%)

Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNG 312
           R  S+P+     P   +IL +  N+I  L+   F S   L+ + L  N+L  +  G F+ 
Sbjct: 30  RHASVPA---GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS 86

Query: 313 LAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKL 358
           L ++ +L+LG N+L  L S       F+ L  +  L +  N+L +L
Sbjct: 87  LTQLTVLDLGTNQLTVLPS-----AVFDRLVHLKELFMCCNKLTEL 127

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 576 EELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKT 635
           + L L++N++T L P  F     LK L L  N+    P  +   L+ L  +DL  NQL  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 636 IDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT---- 691
           +    +  L  L++L +  N +  +        + L  + L  N+L+ +P   F+     
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 692 ---FLYTN 696
              +L+ N
Sbjct: 162 THAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 10/131 (7%)

Query: 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
            L +  N+ T +     +    L+ L +  N++G L    F S   L  + L  N+LT +
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 306 EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 365
               F+ L  +  L +  N+L +L            L  +  L L  N+L  +    F  
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPR------GIERLTHLTHLALDQNQLKSIPHGAFDR 157

Query: 366 ----THITIFS 372
               TH  +F 
Sbjct: 158 LSSLTHAYLFG 168

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 7/130 (5%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
             Q L L DN     L P      F  L+NL+ L L  NQ+ A+  G+      L  L +
Sbjct: 41  NAQILYLHDNQI-TKLEP----GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
             N+ T +PS   +    L+ L M  N++  L          L  + L  N+L +I  GA
Sbjct: 96  GTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGA 154

Query: 310 FNGLAKI-HI 318
           F+ L+ + H 
Sbjct: 155 FDRLSSLTHA 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 22/92 (23%), Positives = 40/92 (43%)

Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN 654
           I +  + L L  N+       +   L  L+E+ L +NQL  +    +  L +L  L+L  
Sbjct: 38  IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97

Query: 655 NNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686
           N +  +    F     L+ + +  N+L +LP 
Sbjct: 98  NQLTVLPSAVFDRLVHLKELFMCCNKLTELPR 129

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
            N +IL L DNQI  +E G+     NL EL +  N+  ++P    +    L +L +  N+
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
           +  L +  F     L+ + +  N+LT +  G    L  +  L L  N+L  +       G
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPH-----G 153

Query: 338 AFNGLAKI-HI 347
           AF+ L+ + H 
Sbjct: 154 AFDRLSSLTHA 164

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 87.4 bits (217), Expect = 5e-20
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
           T+L L  N    L P   +N   L  ++LS N  +S+L    F  + +L  L L+   L+
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
            IP   FD L +L+ L L  N ++ +PE  F +L  L++L +  N
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 1/111 (0%)

Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
            G+   +  L +  NQ T +     NYK LT +DLS+N +  L   +F+N+  LL L LS
Sbjct: 27  KGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86

Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
            N  L  +P   FD LK L +L L    +  +P+  F++L  L +L +  N
Sbjct: 87  YN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 2/103 (1%)

Query: 452 LNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEI 511
           L L  N   + +P       K L ++DL+   + ++    F  +  L  L L++N L  I
Sbjct: 36  LYLDGN-QFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 512 PEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
           P   F  L +L  L L  N+I  +  G+   L ++  L +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 6/109 (5%)

Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN 534
             L L       +P+ +     +L  + L++N ++ +    F N+  L  L LS N +  
Sbjct: 34  TELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 535 LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
           +   +  GL S++ L L  N ++      FN     + S+L  L +  N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFN-----DLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 6/108 (5%)

Query: 246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI 305
           EL +D N+FT +P   L+  + L ++ ++ NRI TL   SF +   L  +IL  NRL  I
Sbjct: 35  ELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 306 EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYN 353
               F+GL  + +L+L  N ++         GAFN L+ +  L +G N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDIS-----VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 30/135 (22%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
            + EL L  N F  +L P     E     +L ++DLS+N+I  +          LL L +
Sbjct: 32  DVTELYLDGNQF--TLVP----KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGA 309
            +NR   IP  + +G ++LR+LS                        L GN ++ +  GA
Sbjct: 86  SYNRLRCIPPRTFDGLKSLRLLS------------------------LHGNDISVVPEGA 121

Query: 310 FNGLAKIHILNLGYN 324
           FN L+ +  L +G N
Sbjct: 122 FNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 11/132 (8%)

Query: 529 NNNIVNLRVGSLYGLPS-----MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
            + +V      L  LP      +  L L  N+ T    +  N K       L  ++L+NN
Sbjct: 11  LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKH------LTLIDLSNN 64

Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGY 643
            ++ L   SF+  ++L TL L++N+    P     GL  L+ + L  N +  + +  +  
Sbjct: 65  RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND 124

Query: 644 LPRLRKLNLNNN 655
           L  L  L +  N
Sbjct: 125 LSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDA 659
             L L  N+F   PKEL     +L  IDLSNN++ T+ +  +  + +L  L L+ N +  
Sbjct: 34  TELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 660 ISETCFFNSSQLQIINLSFNRLEKLPERLFNT-------FLYTN 696
           I    F     L++++L  N +  +PE  FN         +  N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 63/162 (38%)

Query: 318 ILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDF 377
            L L  N+       T      +    + +++L  NR++ L++ +F              
Sbjct: 35  ELYLDGNQF------TLVPKELSNYKHLTLIDLSNNRISTLSNQSF-------------- 74

Query: 378 QKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKE 437
                                   +  L                      L LS+N L+ 
Sbjct: 75  ----------------------SNMTQL--------------------LTLILSYNRLRC 92

Query: 438 LEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
           + P  F  + +L  L+L  N  +S +P G F+ L  L  L +
Sbjct: 93  IPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAI 133

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 87.6 bits (218), Expect = 4e-19
 Identities = 62/280 (22%), Positives = 99/280 (35%), Gaps = 56/280 (20%)

Query: 417 SSALNYKLLTKLDLSHNNL--KELEPTAFTNVPTLLHLNLSRNAHLS-SLPVGGFDPLKK 473
            +      +  LDLS  NL      P++  N+P L  L +    +L   +P      L +
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQ 102

Query: 474 LEVLDLAATGLK-SIPQYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNN 531
           L  L +  T +  +IP     ++  L  L  ++N L+  +P  +  +L NL  +    N 
Sbjct: 103 LHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNR 160

Query: 532 IVNLRVG----SLYGLPSMKR-LDLSFNKLTTFKGDYFNTKSKPNT---SSLEELNLNNN 583
           I     G    S      +   + +S N+LT   G        P T    +L  ++L+ N
Sbjct: 161 IS----GAIPDSYGSFSKLFTSMTISRNRLT---G------KIPPTFANLNLAFVDLSRN 207

Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFN-YFPKELILGLSYLQEIDLSNNQLKTIDDYDYG 642
            L       F      + + LA N       K  +     L  +DL NN++       YG
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRI-------YG 258

Query: 643 YLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682
            LP                         L  +N+SFN L 
Sbjct: 259 TLP-----------------QGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 75.6 bits (187), Expect = 5e-15
 Identities = 43/199 (21%), Positives = 73/199 (36%), Gaps = 37/199 (18%)

Query: 378 QKLKSLDLNGNFLI--------NLESTGLEDTLDNLNVRDNQIT-TLSSSALNYKLLTKL 428
            +L  L +    +          +++      L  L+   N ++ TL  S  +   L  +
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKT------LVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 429 DLSHNNLKELEPTAFTNVPTLL-HLNLSRNAHLS-SLP--VGGFDPLKKLEVLDLAATGL 484
               N +    P ++ +   L   + +SRN  L+  +P           L  +DL+   L
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANL----NLAFVDLSRNML 209

Query: 485 K-SIPQYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRVG---- 538
           +       F    N + + LA N L  ++ +       NL  LDL NN I     G    
Sbjct: 210 EGDASV-LFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRI----YGTLPQ 262

Query: 539 SLYGLPSMKRLDLSFNKLT 557
            L  L  +  L++SFN L 
Sbjct: 263 GLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 50/232 (21%), Positives = 89/232 (38%), Gaps = 42/232 (18%)

Query: 313 LAKIHILNLGYNRLNKLNSDTFQGGA----FNGLAKIHILNLGYNRLNKLNSDTFQGTHI 368
           L ++H L + +  ++         GA     + +  +  L+  YN L+        GT  
Sbjct: 100 LTQLHYLYITHTNVS---------GAIPDFLSQIKTLVTLDFSYNALS--------GT-- 140

Query: 369 TIFSFFQDFQKLKSLDLNGNFL---INLESTGLEDTLDNLNVRDNQIT-TLSSS--ALNY 422
            +         L  +  +GN +   I            ++ +  N++T  +  +   LN 
Sbjct: 141 -LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198

Query: 423 KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLS-SLPVGGFDPLKKLEVLDLAA 481
             L  +DLS N L+      F +      ++L++N  L+  L   G    K L  LDL  
Sbjct: 199 --LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGL--SKNLNGLDLRN 253

Query: 482 TGLK-SIPQYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNN 531
             +  ++PQ    +L  L  L ++ N+L  EIP+    NL        +NN 
Sbjct: 254 NRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.8 bits (138), Expect = 9e-09
 Identities = 41/185 (22%), Positives = 66/185 (35%), Gaps = 25/185 (13%)

Query: 518 NLLNLTYLDLSNNNIVNLRV--GSLYGLPSMKRLDLS-FNKLTTFKGDYFNTKSKPNT-- 572
               +  LDLS  N+        SL  LP +  L +   N L    G        P    
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV---G------PIPPAIA 98

Query: 573 --SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN-YFPKELILGLSYLQEIDLS 629
             + L  L + +  ++   P   +    L TL  ++N  +   P  +   L  L  I   
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFD 157

Query: 630 NNQLK-TIDDYDYGYLPRL-RKLNLNNNNID-AISETCFFNSSQLQIINLSFNRLE-KLP 685
            N++   I D  YG   +L   + ++ N +   I  T  F +  L  ++LS N LE    
Sbjct: 158 GNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPPT--FANLNLAFVDLSRNMLEGDAS 214

Query: 686 ERLFN 690
               +
Sbjct: 215 VLFGS 219

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 54/278 (19%), Positives = 86/278 (30%), Gaps = 82/278 (29%)

Query: 212 SEFHGLVNLRILDLSDNQIKAIEEGI----LKGCDNLLELRMDHNRFT-SIPSVSLNGPR 266
                L  L  L ++   +     G     L     L+ L   +N  + ++P        
Sbjct: 95  PAIAKLTQLHYLYITHTNV----SGAIPDFLSQIKTLVTLDFSYNALSGTLPPS------ 144

Query: 267 ALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT-TI--EGGAFNGLAKIHILNLGY 323
                      I +L          L  I   GNR++  I    G+F+ L     + +  
Sbjct: 145 -----------ISSLPN--------LVGITFDGNRISGAIPDSYGSFSKLFT--SMTISR 183

Query: 324 NRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSL 383
           NRL      TF          +  ++L  N L         G        F   +  + +
Sbjct: 184 NRLTGKIPPTF------ANLNLAFVDLSRNMLE--------G---DASVLFGSDKNTQKI 226

Query: 384 DLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF 443
            L  N L                     +  +  S    K L  LDL +N +    P   
Sbjct: 227 HLAKNSL-----AF-------------DLGKVGLS----KNLNGLDLRNNRIYGTLPQGL 264

Query: 444 TNVPTLLHLNLSRNAHLS-SLPVGGFDPLKKLEVLDLA 480
           T +  L  LN+S N +L   +P GG   L++ +V   A
Sbjct: 265 TQLKFLHSLNVSFN-NLCGEIPQGG--NLQRFDVSAYA 299

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 81.9 bits (203), Expect = 3e-18
 Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 24/135 (17%)

Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS 455
           TG+  +   L +  N++ +                       L    F  +  L  L+LS
Sbjct: 24  TGIPSSATRLELESNKLQS-----------------------LPHGVFDKLTQLTKLSLS 60

Query: 456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMM 515
           +N  + SLP G FD L KL +L L    L+S+P   FD+L  LK L L  N L  +P+ +
Sbjct: 61  QN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI 119

Query: 516 FKNLLNLTYLDLSNN 530
           F  L +L  + L  N
Sbjct: 120 FDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 2/112 (1%)

Query: 444 TNVPT-LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLC 502
           T +P+    L L  N  L SLP G FD L +L  L L+   ++S+P   FD+L  L  L 
Sbjct: 24  TGIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82

Query: 503 LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
           L  N L  +P  +F  L  L  L L  N + ++  G    L S++++ L  N
Sbjct: 83  LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 381 KSLDLNGNFLINLESTGLEDTLDN---LNVRDNQITTLSSSALNYKL--LTKLDLSHNNL 435
             L+L  N L +L   G+ D L     L++  NQI +L     + KL  LT L L  N L
Sbjct: 31  TRLELESNKLQSLPH-GVFDKLTQLTKLSLSQNQIQSLPDGVFD-KLTKLTILYLHENKL 88

Query: 436 KELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
           + L    F  +  L  L L  N  L S+P G FD L  L+ + L
Sbjct: 89  QSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWL 131

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 29/107 (27%), Positives = 53/107 (49%)

Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
           SS   L L +N+L  L    F   ++L  L L+ N+    P  +   L+ L  + L  N+
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 633 LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
           L+++ +  +  L +L++L L+ N + ++ +  F   + LQ I L  N
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 39/134 (29%), Positives = 51/134 (38%), Gaps = 29/134 (21%)

Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
             L L  N L  +P  +F  L  LT L LS N I +L  G              F+KLT 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG-------------VFDKLT- 76

Query: 559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL 618
                           L  L L+ N+L  L    F   ++LK L L  N+    P  +  
Sbjct: 77  ---------------KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD 121

Query: 619 GLSYLQEIDLSNNQ 632
            L+ LQ+I L  N 
Sbjct: 122 RLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 12/124 (9%)

Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNG 312
             TS+P+     P +   L +  N++ +L    F     L ++ L  N++ ++  G F+ 
Sbjct: 18  GLTSVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK 74

Query: 313 LAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQG----THI 368
           L K+ IL L  N+L  L +     G F+ L ++  L L  N+L  +    F        I
Sbjct: 75  LTKLTILYLHENKLQSLPN-----GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129

Query: 369 TIFS 372
            + +
Sbjct: 130 WLHT 133

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN 654
           I S    L+L  NK    P  +   L+ L ++ LS NQ++++ D  +  L +L  L L+ 
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85

Query: 655 NNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT-------FLYTN 696
           N + ++    F   +QL+ + L  N+L+ +P+ +F+        +L+TN
Sbjct: 86  NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 24/107 (22%), Positives = 49/107 (45%)

Query: 218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR 277
            +   L+L  N+++++  G+      L +L +  N+  S+P    +    L IL +  N+
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 278 IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN 324
           + +L    F     L+ + L  N+L ++  G F+ L  +  + L  N
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 8/99 (8%)

Query: 162 SDIPI--RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
           + IP    RL+   N L+ L   +F      L +L L+ N    SL        F  L  
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFD-KLTQLTKLSLSQNQI-QSLPD----GVFDKLTK 77

Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIP 258
           L IL L +N+++++  G+      L EL +D N+  S+P
Sbjct: 78  LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE 306
           L ++ N+  S+P    +    L  LS++ N+I +L    F     L  + L  N+L ++ 
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92

Query: 307 GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYN 353
            G F+ L ++  L L  N+L  +       G F+ L  +  + L  N
Sbjct: 93  NGVFDKLTQLKELALDTNQLKSVPD-----GIFDRLTSLQKIWLHTN 134

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 81.6 bits (202), Expect = 5e-18
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
             +      L + DN++  +SS  L  +L  L KL+L  N L  +EP AF     +  L 
Sbjct: 25  RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84

Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
           L  N  +  +    F  L +L+ L+L    +  +    F+ L +L  L LA N
Sbjct: 85  LGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 73.1 bits (180), Expect = 5e-15
 Identities = 32/103 (31%), Positives = 45/103 (43%)

Query: 452 LNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEI 511
           L L+ N        G F  L  L  L+L    L  I    F+   +++ L L  N + EI
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93

Query: 512 PEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN 554
              MF  L  L  L+L +N I  +  GS   L S+  L+L+ N
Sbjct: 94  SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 70.0 bits (172), Expect = 6e-14
 Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 475 EVLDLAATGLKSI-PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV 533
             L L    L  I     F  L +L  L L  N LT I    F+   ++  L L  N I 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 534 NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
            +      GL  +K L+L  N+++      F      + +SL  LNL +N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-----HLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 28/133 (21%)

Query: 192 QELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDH 251
            EL L DN     L  I S   F  L +L  L+L  NQ+  IE    +G  ++ EL++  
Sbjct: 32  TELLLNDN----ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87

Query: 252 NRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
           N+   I +    G   L+ L+                        L  N+++ +  G+F 
Sbjct: 88  NKIKEISNKMFLGLHQLKTLN------------------------LYDNQISCVMPGSFE 123

Query: 312 GLAKIHILNLGYN 324
            L  +  LNL  N
Sbjct: 124 HLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 7/116 (6%)

Query: 542 GLP-SMKRLDLSFNKLTTFKGD-YFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKL 599
            +P     L L+ N+L     D  F          L +L L  N+LT + P++F   S +
Sbjct: 26  DIPLHTTELLLNDNELGRISSDGLFG-----RLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
           + L+L  NK      ++ LGL  L+ ++L +NQ+  +    + +L  L  LNL +N
Sbjct: 81  QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 60.8 bits (148), Expect = 9e-11
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 9/104 (8%)

Query: 253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKAD-SFLSQRWLERIILRGNRLTTIEGGAFN 311
               IP    + P     L +  N +G + +D  F     L ++ L+ N+LT IE  AF 
Sbjct: 19  GLKEIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75

Query: 312 GLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRL 355
           G + I  L LG N++ ++++       F GL ++  LNL  N++
Sbjct: 76  GASHIQELQLGENKIKEISN-----KMFLGLHQLKTLNLYDNQI 114

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 600 KTLKLAFNKFNYFPKELIL-GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID 658
             L L  N+      + +   L +L +++L  NQL  I+   +     +++L L  N I 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 659 AISETCFFNSSQLQIINLSFNRLEKLPERLFNT-------FLYTN 696
            IS   F    QL+ +NL  N++  +    F          L +N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 17/97 (17%)

Query: 293 ERIILRGNRLTTIE-GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG 351
             ++L  N L  I   G F  L  +  L L  N+L  +        AF G + I  L LG
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-----NAFEGASHIQELQLG 86

Query: 352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN 388
            N++ ++++  F G H           +LK+L+L  N
Sbjct: 87  ENKIKEISNKMFLGLH-----------QLKTLNLYDN 112

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 7/99 (7%)

Query: 162 SDIPI--RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
            DIP+    L  + N L R+S          L +L L  N     + P    + F G  +
Sbjct: 25  RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEP----NAFEGASH 79

Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIP 258
           ++ L L +N+IK I   +  G   L  L +  N+ + + 
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 85.2 bits (210), Expect = 2e-17
 Identities = 44/311 (14%), Positives = 91/311 (29%), Gaps = 19/311 (6%)

Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLD 403
           ++  L L  +                    +       SL+               D+  
Sbjct: 270 RMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQK 329

Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
              +  ++       +   + L + +LS      L  +   +   L  L       L ++
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVL-QSELESCKELQELEPENKWCLLTI 388

Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
                  ++ L+ L      L+     +  + +   YL    +       ++     ++ 
Sbjct: 389 ----ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR 444

Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
            L L++ ++  L    L  L  +  LDLS N+L           +      LE L  ++N
Sbjct: 445 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRAL------PPALAALRCLEVLQASDN 496

Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILG-LSYLQEIDLSNNQLKTIDDYD-- 640
            L  +         +L+ L L  N+         L     L  ++L  N L   +     
Sbjct: 497 ALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554

Query: 641 -YGYLPRLRKL 650
               LP +  +
Sbjct: 555 LAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 76.7 bits (188), Expect = 1e-14
 Identities = 46/272 (16%), Positives = 93/272 (34%), Gaps = 17/272 (6%)

Query: 416 SSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLE 475
             S +    L    L+    +      +T   +     L ++              ++L 
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD--SATDEQLF 352

Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
             +L+      +   + +    L+ L   +        ++ + L  L Y   +      L
Sbjct: 353 RCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 411

Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTI 595
           +  ++  + +    DL    L            K   + +  L+L + +LT L       
Sbjct: 412 K--AVDPMRAAYLDDLRSKFLLENS------VLKMEYADVRVLHLAHKDLTVL--CHLEQ 461

Query: 596 HSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
              +  L L+ N+    P  L   L  L+ +  S+N L+ +D      LPRL++L L NN
Sbjct: 462 LLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN 518

Query: 656 NIDAISE-TCFFNSSQLQIINLSFNRLEKLPE 686
            +   +      +  +L ++NL  N L +   
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.9 bits (165), Expect = 6e-12
 Identities = 47/297 (15%), Positives = 90/297 (30%), Gaps = 28/297 (9%)

Query: 209 FSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRAL 268
            +      L +L    L+D   +     I  G D+  E  +  +R       S      L
Sbjct: 293 RNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT-DEQL 351

Query: 269 RILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNK 328
               ++  +   L           +  +     L  +E      L     + L    L+ 
Sbjct: 352 FRCELSVEKSTVL-----------QSELESCKELQELEPENKWCL---LTIILLMRALDP 397

Query: 329 LNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN 388
           L  +      F+ L  +  +   Y    +  S       +    +       + L L   
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLR--SKFLLENSVLKMEYADV----RVLHLAHK 451

Query: 389 FLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPT 448
            L  L        + +L++  N++  L  +    + L  L  S N L+ ++     N+P 
Sbjct: 452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VANLPR 509

Query: 449 LLHLNLSRNAHLSSLP-VGGFDPLKKLEVLDLAATGLKSIPQYQ---FDELLNLKYL 501
           L  L L  N  L     +       +L +L+L    L      Q    + L ++  +
Sbjct: 510 LQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 2e-10
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 4/103 (3%)

Query: 206 NPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
             +        L+ +  LDLS N+++A+    L     L  L+   N   ++    +   
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD--GVANL 507

Query: 266 RALRILSMAYNRIGTLKADSFLSQ-RWLERIILRGNRLTTIEG 307
             L+ L +  NR+    A   L     L  + L+GN L   EG
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 8e-09
 Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 6/143 (4%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
            +  +R A      S   + ++       ++R+L L+   +  +    L+    +  L +
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDL 470

Query: 250 DHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEG-G 308
            HNR  ++P  +L   R L +L  + N +  +   + L +  L+ ++L  NRL       
Sbjct: 471 SHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPR--LQELLLCNNRLQQSAAIQ 527

Query: 309 AFNGLAKIHILNLGYNRLNKLNS 331
                 ++ +LNL  N L +   
Sbjct: 528 PLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 8e-08
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
           +  LD S N LR L   L +     L+ L+ +DN        + +      L  L+ L L
Sbjct: 465 VTHLDLSHNRLRALPPALAALRC--LEVLQASDN-------ALENVDGVANLPRLQELLL 515

Query: 226 SDNQIKAIEE-GILKGCDNLLELRMDHNRFTSIPS 259
            +N+++       L  C  L+ L +  N       
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 31/213 (14%), Positives = 59/213 (27%), Gaps = 28/213 (13%)

Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543
                +     L +L    L          +++    +     L  +        S    
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT-D 348

Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
             + R +LS  K T                  +    +  EL  L P +      +  L 
Sbjct: 349 EQLFRCELSVEKSTVL----------------QSELESCKELQELEPENKWCLLTI-ILL 391

Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRL--------RKLNLNNN 655
           +       + KE +   S L+ +D             +     +        R L+L + 
Sbjct: 392 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK 451

Query: 656 NIDAISETCFFNSSQLQIINLSFNRLEKLPERL 688
           ++  +          +  ++LS NRL  LP  L
Sbjct: 452 DLTVLCHLEQL--LLVTHLDLSHNRLRALPPAL 482

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 79.4 bits (195), Expect = 4e-16
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 8/105 (7%)

Query: 483 GLKSIPQYQFDELLNLKYLCLAHN-HLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY 541
           G             NL  L + +  HL  +     + L  L  L +  + +  +   + +
Sbjct: 19  GALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77

Query: 542 GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT 586
             P + RL+LSFN L +               SL+EL L+ N L 
Sbjct: 78  FTPRLSRLNLSFNALESLSWKTV------QGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 75.5 bits (185), Expect = 8e-15
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 2/105 (1%)

Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
           + L  + +   +           L  L +    HL  L +     L +L  L +  +GL+
Sbjct: 11  SGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
            +    F     L  L L+ N L  +     +  L+L  L LS N
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 69.4 bits (169), Expect = 8e-13
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 617 ILGLSYLQEIDLSNNQ-LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIIN 675
           + G   L E+ + N Q L+ ++  D   L  LR L +  + +  ++   F  + +L  +N
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 676 LSFNRLEKLPERLF 689
           LSFN LE L  +  
Sbjct: 87  LSFNALESLSWKTV 100

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 66.3 bits (161), Expect = 9e-12
 Identities = 24/114 (21%), Positives = 33/114 (28%), Gaps = 24/114 (21%)

Query: 367 HITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLL 425
            +         + L  L +                          +  L    L     L
Sbjct: 20  ALDSLHHLPGAENLTELYIENQ---------------------QHLQHLELRDLRGLGEL 58

Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
             L +  + L+ + P AF   P L  LNLS N  L SL       L  L+ L L
Sbjct: 59  RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGL-SLQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 65.5 bits (159), Expect = 2e-11
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 8/117 (6%)

Query: 241 CDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNR-IGTLKADSFLSQRWLERIILRG 299
                 LR   +         L G   L  L +   + +  L+         L  + +  
Sbjct: 7   PHGSSGLRCTRDGALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 300 NRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
           + L  +   AF+   ++  LNL +N L  L+  T QG        +  L L  N L+
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG------LSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.8 bits (157), Expect = 3e-11
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 590 PSSFTIHSKLKTLKLAFNK-FNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLR 648
                    L  L +   +   +     + GL  L+ + +  + L+ +    + + PRL 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 649 KLNLNNNNIDAISETCFFNSSQLQIINLSFNRL 681
           +LNL+ N ++++S       S LQ + LS N L
Sbjct: 84  RLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.8 bits (144), Expect = 9e-10
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 570 PNTSSLEELNL-NNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDL 628
           P   +L EL + N   L +L         +L+ L +  +   +   +       L  ++L
Sbjct: 28  PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87

Query: 629 SNNQLKTIDDYDYGYLPRLRKLNLNNN 655
           S N L+++       L  L++L L+ N
Sbjct: 88  SFNALESLSWKTVQGLS-LQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.7 bits (136), Expect = 1e-08
 Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 14/112 (12%)

Query: 174 NALRRLSDKLFS-----PHRDTLQELRLADNLFGDSLNPI--FSTSEFHGLVNLRILDLS 226
           + LR   D         P  + L EL + +         +      +  GL  LR L + 
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQ------QHLQHLELRDLRGLGELRNLTIV 64

Query: 227 DNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
            + ++ +          L  L +  N   S+   ++ G   L+ L ++ N +
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 37/127 (29%)

Query: 309 AFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHI 368
              G   +  L +   +    +    +     GL ++  L +  + L  +  D F  T  
Sbjct: 26  HLPGAENLTELYIENQQ----HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP- 80

Query: 369 TIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKL 428
                     +L  L+L+                       N + +LS   +    L +L
Sbjct: 81  ----------RLSRLNLSF----------------------NALESLSWKTVQGLSLQEL 108

Query: 429 DLSHNNL 435
            LS N L
Sbjct: 109 VLSGNPL 115

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 48/330 (14%), Positives = 96/330 (29%), Gaps = 68/330 (20%)

Query: 401 TLDNLNVRDNQIT-----TLSSSALNYKLLTKLDLSHNNL-----KELEPTAFTNVPTLL 450
           +++  +++ + IT     ++ +  L    + ++ LS N +     + L      +   L 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS-ENIASKKDLE 63

Query: 451 HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
               S       +     + L+ L         L   P         L  + L+ N    
Sbjct: 64  IAEFSDI-FTGRVKDEIPEALRLL------LQALLKCP--------KLHTVRLSDNAFGP 108

Query: 511 IPEMMFKNLL----NLTYLDLSNNNI-------------VNLRVGSLYGLPSMKRLDLSF 553
             +    + L     L +L L NN +                        P ++ +    
Sbjct: 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168

Query: 554 NKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT-----YLFPSSFTIHSKLKTLKLAFNK 608
           N+L       +    + +   L  + +  N +      +L         +LK L L  N 
Sbjct: 169 NRLENGSMKEWAKTFQSHRL-LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 609 FNYFPK------ELILGLSYLQEIDLSNNQLKTI------DDYDYGYLPRLRKLNLNNNN 656
           F             +     L+E+ L++  L         D +       L+ L L  N 
Sbjct: 228 FT--HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285

Query: 657 ID-----AISETCFFNSSQLQIINLSFNRL 681
           I+      +          L  + L+ NR 
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 45/295 (15%), Positives = 84/295 (28%), Gaps = 65/295 (22%)

Query: 345 IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED---- 400
           +  + L  N +        +     +       + L+  + +  F   ++    E     
Sbjct: 34  VKEIVLSGNTIGT------EAA-RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86

Query: 401 --------TLDNLNVRDNQITTLSSSAL-----NYKLLTKLDLSHNNL------------ 435
                    L  + + DN     +   L      +  L  L L +N L            
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL 146

Query: 436 -KELEPTAFTNVPTLLHLNLSRN-------AHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
            +        N P L  +   RN          +      F   + L  + +   G++  
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK----TFQSHRLLHTVKMVQNGIRPE 202

Query: 488 -PQYQFDELL----NLKYLCLAHNHLTE-----IPEMMFKNLLNLTYLDLSNNNIVN--- 534
             ++   E L     LK L L  N  T      +   + K+  NL  L L++  +     
Sbjct: 203 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL-KSWPNLRELGLNDCLLSARGA 261

Query: 535 ---LRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT 586
              +   S      ++ L L +N++         T        L  L LN N  +
Sbjct: 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 69/413 (16%), Positives = 131/413 (31%), Gaps = 106/413 (25%)

Query: 156 MQIFSSSDIPIRRLDFSGNAL-----RRLSDKLFSPHRDTLQELRLADNLFGD----SLN 206
           M  FS     I       +A+     + +   L     D+++E+ L+ N  G      L+
Sbjct: 1   MARFS-----IEGKSLKLDAITTEDEKSVFAVLLED--DSVKEIVLSGNTIGTEAARWLS 53

Query: 207 PIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPR 266
              ++ +     +L I + SD     +++ I +    LL+              +L    
Sbjct: 54  ENIASKK-----DLEIAEFSDIFTGRVKDEIPEALRLLLQ--------------ALLKCP 94

Query: 267 ALRILSMAYNRIGTLKADSF----LSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLG 322
            L  + ++ N  G    +           LE + L  N L   + GA    A   +    
Sbjct: 95  KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNK 153

Query: 323 YNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKS 382
             +                   +  +  G NRL                  FQ  + L +
Sbjct: 154 KAKNAP---------------PLRSIICGRNRL------ENGSM-KEWAKTFQSHRLLHT 191

Query: 383 LDLNGNFL-----INLESTGLED--TLDNLNVRDNQITTLSSSAL-----NYKLLTKLDL 430
           + +  N +      +L   GL     L  L+++DN  T L SSAL     ++  L +L L
Sbjct: 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251

Query: 431 SHNNLKELEPTAFTNV------PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
           +   L      A  +         L  L L  N                    ++    +
Sbjct: 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN--------------------EIELDAV 291

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTE----IPEM--MFKNLLNLTYLDLSNNN 531
           +++     +++ +L +L L  N  +E    + E+  +F         +L +  
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 344

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 46/324 (14%), Positives = 95/324 (29%), Gaps = 69/324 (21%)

Query: 266 RALRILSMAYNRIG----TLKADSFLSQRWLERIILRGNRLTTIEGG-----AFNGLAKI 316
            ++   S+  + I            L    ++ I+L GN +   E              +
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIG-TEAARWLSENIASKKDL 62

Query: 317 HILNLGYNRLNKLNSDTFQGG-----AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIF 371
            I         ++  +  +       A     K+H + L  N          +     + 
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN---AFGPTAQEP----LI 115

Query: 372 SFFQDFQKLKSLDLNGN---------------FLINLESTGLEDTLDNLNVRDNQITTLS 416
            F      L+ L L+ N                L   +       L ++    N++   S
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175

Query: 417 SSAL-----NYKLLTKLDLSHNNL-----KELEPTAFTNVPTLLHLNLSRN-------AH 459
                    +++LL  + +  N +     + L          L  L+L  N       + 
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 460 LSSLPVGGFDPLKKLEVLDLA-----ATGLKSIPQY-QFDELLNLKYLCLAHNHLTE--- 510
           L+            L  L L      A G  ++       E + L+ L L +N +     
Sbjct: 236 LAI----ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291

Query: 511 --IPEMMFKNLLNLTYLDLSNNNI 532
             +  ++ + + +L +L+L+ N  
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 38/172 (22%)

Query: 545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT----YLFPSSFTIHSKLK 600
           S++   L  + +TT            + S ++E+ L+ N +          +      L+
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDS-VKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 601 TLKLAFNKFNYFPKELILGLSY----------LQEIDLSNNQLKTIDDYDYGYL------ 644
             + +         E+   L            L  + LS+N            L      
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA---FGPTAQEPLIDFLSK 120

Query: 645 -PRLRKLNLNNNNI-------------DAISETCFFNSSQLQIINLSFNRLE 682
              L  L L+NN +             +        N+  L+ I    NRLE
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 72.4 bits (178), Expect = 6e-15
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 7/135 (5%)

Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
           + L+   +++     +TN      L+L        +       L + + +D +   ++ +
Sbjct: 2   VKLTAELIEQAA--QYTNAVRDRELDLRGY--KIPVIENLGATLDQFDAIDFSDNEIRKL 57

Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR-VGSLYGLPSM 546
               F  L  LK L + +N +  I E + + L +LT L L+NN++V L  +  L  L S+
Sbjct: 58  DG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 547 KRLDLSFNKLTTFKG 561
             L +  N +T  K 
Sbjct: 116 TYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 29/157 (18%)

Query: 374 FQDFQKLKSLDLNGNFLINLESTGLE-DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSH 432
           + +  + + LDL G  +  +E+ G   D  D ++  DN+I  L    L  +L   L +++
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRL-KTLLVNN 73

Query: 433 NNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQF 492
           N +  +       +P L  L L+ N  L  L  G  DPL  L+                 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNN-SLVEL--GDLDPLASLK----------------- 113

Query: 493 DELLNLKYLCLAHNHLTEIP---EMMFKNLLNLTYLD 526
               +L YLC+  N +T        +   +  +  LD
Sbjct: 114 ----SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 9/132 (6%)

Query: 222 ILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTL 281
           ++ L+   I+   +          EL +   +   I ++     +    +  + N I  L
Sbjct: 1   MVKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLDQ-FDAIDFSDNEIRKL 57

Query: 282 KADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG 341
             D F   R L+ +++  NR+  I  G    L  +  L L  N L +L            
Sbjct: 58  --DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP----LAS 111

Query: 342 LAKIHILNLGYN 353
           L  +  L +  N
Sbjct: 112 LKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 9/123 (7%)

Query: 571 NTSSLEELNLNNNELTYL--FPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDL 628
           N     EL+L   ++  +    ++     +   +  + N+      +    L  L+ + +
Sbjct: 17  NAVRDRELDLRGYKIPVIENLGATLD---QFDAIDFSDNEIRKL--DGFPLLRRLKTLLV 71

Query: 629 SNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE-TCFFNSSQLQIINLSFNRLEKLPE- 686
           +NN++  I +     LP L +L L NN++  + +     +   L  + +  N +      
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 131

Query: 687 RLF 689
           RL+
Sbjct: 132 RLY 134

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 4/122 (3%)

Query: 204 SLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLN 263
           +   I   +++   V  R LDL   +I  I E +    D    +    N    +    L 
Sbjct: 5   TAELIEQAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFPLL 63

Query: 264 GPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEG-GAFNGLAKIHILNLG 322
             R L+ L +  NRI  +      +   L  +IL  N L  +        L  +  L + 
Sbjct: 64  --RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 323 YN 324
            N
Sbjct: 122 RN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
            R LD  G  +  + +       D    +  +DN        I     F  L  L+ L +
Sbjct: 21  DRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNE-------IRKLDGFPLLRRLKTLLV 71

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS-LNGPRALRILSMAYNRI 278
           ++N+I  I EG+ +   +L EL + +N    +  +  L   ++L  L +  N +
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 150 GHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIF 209
           G++I  ++   ++      +DFS N +R+L      P    L+ L + +N        + 
Sbjct: 28  GYKIPVIENLGATLDQFDAIDFSDNEIRKLDG---FPLLRRLKTLLVNNNRICRIGEGL- 83

Query: 210 STSEFHGLVNLRILDLSDNQIKAIEE-GILKGCDNLLELRMDHNRFTSIP 258
                  L +L  L L++N +  + +   L    +L  L +  N  T+  
Sbjct: 84  ----DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 43/162 (26%)

Query: 297 LRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN 356
           L    +       +    +   L+L   ++  +            L +   ++   N + 
Sbjct: 4   LTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE------NLGATLDQFDAIDFSDNEIR 55

Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
           KL               F   ++LK+L +N N +  +   GL+  L +            
Sbjct: 56  KL-------------DGFPLLRRLKTLLVNNNRICRIGE-GLDQALPD------------ 89

Query: 417 SSALNYKLLTKLDLSHNNLKELEP-TAFTNVPTLLHLNLSRN 457
                   LT+L L++N+L EL       ++ +L +L + RN
Sbjct: 90  --------LTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 71.9 bits (177), Expect = 7e-15
 Identities = 35/88 (39%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 444 TNVPT-LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLC 502
           T +PT    L L  N  ++ L  G FD L +L  LDL    L  +P   FD+L  L  L 
Sbjct: 26  TGIPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84

Query: 503 LAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
           L  N L  IP   F NL +LT++ L NN
Sbjct: 85  LNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 38/113 (33%), Positives = 50/113 (44%), Gaps = 28/113 (24%)

Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
           TG+  T   L + DNQIT L     + +L  LT+LDL +N L                  
Sbjct: 26  TGIPTTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLT----------------- 67

Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
                    LP G FD L +L  L L    LKSIP+  FD L +L ++ L +N
Sbjct: 68  --------VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 25/83 (30%), Positives = 43/83 (51%)

Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
           ++ + L L +N++T L P  F   ++L  L L  N+    P  +   L+ L ++ L++NQ
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89

Query: 633 LKTIDDYDYGYLPRLRKLNLNNN 655
           LK+I    +  L  L  + L NN
Sbjct: 90  LKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 15/92 (16%)

Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
             + L L  N +T++   +F  L  LT LDL NN +  L  G    L  + +L L+ N+L
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90

Query: 557 TTFKGDYFNTKSKP-----NTSSLEELNLNNN 583
                     KS P     N  SL  + L NN
Sbjct: 91  ----------KSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
           T Q L L DN     L P      F  L  L  LDL +NQ+  +  G+      L +L +
Sbjct: 31  TTQVLYLYDNQI-TKLEP----GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85

Query: 250 DHNRFTSIP 258
           + N+  SIP
Sbjct: 86  NDNQLKSIP 94

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 9/97 (9%)

Query: 252 NRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
               S+P+     P   ++L +  N+I  L+   F     L R+ L  N+LT +  G F+
Sbjct: 19  KSLASVPT---GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75

Query: 312 GLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI-HI 347
            L ++  L+L  N+L  +       GAF+ L  + HI
Sbjct: 76  KLTQLTQLSLNDNQLKSIPR-----GAFDNLKSLTHI 107

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 572 TSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN 631
           + S   ++ +   L  + P+   I +  + L L  N+       +   L+ L  +DL NN
Sbjct: 8   SCSGTTVDCSGKSLASV-PTG--IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN 64

Query: 632 QLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
           QL  +    +  L +L +L+LN+N + +I    F N   L  I L  N
Sbjct: 65  QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 71.1 bits (175), Expect = 1e-14
 Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 444 TNVPT-LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLC 502
             +PT    L L+ N  ++ L  G FD L  L+ L   +  L +IP   FD+L  L  L 
Sbjct: 29  AGIPTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87

Query: 503 LAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
           L  NHL  IP   F NL +LT++ L NN
Sbjct: 88  LNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 28/113 (24%)

Query: 396 TGLEDTLDNLNVRDNQITTLSSSALNYKL--LTKLDLSHNNLKELEPTAFTNVPTLLHLN 453
            G+      L + +NQIT L     +  L  L +L  + N L                  
Sbjct: 29  AGIPTDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSNKLT----------------- 70

Query: 454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
                   ++P G FD L +L  LDL    LKSIP+  FD L +L ++ L +N
Sbjct: 71  --------AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 27/83 (32%), Positives = 41/83 (49%)

Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
           +  + L LNNN++T L P  F     L+ L    NK    P  +   L+ L ++DL++N 
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92

Query: 633 LKTIDDYDYGYLPRLRKLNLNNN 655
           LK+I    +  L  L  + L NN
Sbjct: 93  LKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 15/92 (16%)

Query: 497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL 556
           + + L L +N +T++   +F +L+NL  L  ++N +  +  G    L  + +LDL+ N L
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93

Query: 557 TTFKGDYFNTKSKP-----NTSSLEELNLNNN 583
                     KS P     N  SL  + L NN
Sbjct: 94  ----------KSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 9/97 (9%)

Query: 252 NRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFN 311
            R  S+P+     P   + L +  N+I  L+   F     L+++    N+LT I  G F+
Sbjct: 22  IRLASVPA---GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78

Query: 312 GLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI-HI 347
            L ++  L+L  N L  +       GAF+ L  + HI
Sbjct: 79  KLTQLTQLDLNDNHLKSIPR-----GAFDNLKSLTHI 110

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
             Q L L +N     L P      F  LVNL+ L  + N++ AI  G+      L +L +
Sbjct: 34  DKQRLWLNNNQI-TKLEP----GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88

Query: 250 DHNRFTSIP 258
           + N   SIP
Sbjct: 89  NDNHLKSIP 97

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 75.7 bits (185), Expect = 3e-14
 Identities = 97/595 (16%), Positives = 174/595 (29%), Gaps = 151/595 (25%)

Query: 203 DSLNPIFSTSEFHGLVN--------LRILDL----SDNQIKAIEEGILKGCDN---LLE- 246
           D    I S  E   ++         LR+        +  ++   E +L+   N   L+  
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR--INYKFLMSP 97

Query: 247 LR-------MDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRG 299
           ++       M    +        N  +     ++  +R+        L ++ L    LR 
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLK---L-RQALLE--LRP 149

Query: 300 NRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGY------- 352
            +   I+G    G  K   + L     +   S   Q    +   KI  LNL         
Sbjct: 150 AKNVLIDGVL--GSGK-TWVAL-----DVCLSYKVQC-KMDF--KIFWLNLKNCNSPETV 198

Query: 353 -NRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNL-NVRDN 410
              L KL                    ++ S+      L  L+S   E+ L  L NV++ 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLLVLLNVQNA 256

Query: 411 Q------------ITTLSSSALNYKLLTKLDLSHNNLKELEPTAFT--NVPTLLHLNLSR 456
           +            +TT      ++  L+    +H +L     T  T   V +LL   L  
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDF--LSAATTTHISLDHHSMT-LTPDEVKSLLLKYL-- 311

Query: 457 NAHLSSLP--VGGFDPLKKLEVLDLAATGLKSIP-------QYQFDELLNLKYLCLAHNH 507
           +     LP  V   +P      L + A  ++              D+L  +    L  N 
Sbjct: 312 DCRPQDLPREVLTTNPR----RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NV 365

Query: 508 LTEIPEMMFKNLLNLTYLDLS----NNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDY 563
           L    E   + +    +  LS    + +I           P+   L L +  +       
Sbjct: 366 LEP-AEY--RKM----FDRLSVFPPSAHI-----------PT-ILLSLIWFDVIKSDVMV 406

Query: 564 FNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYL 623
              K      SL  +     E T       +I S    LK+         + ++   +  
Sbjct: 407 VVNKLH--KYSL--VEKQPKESTI------SIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 624 QEIDLSNNQLKTIDDYDYGYLPR-------------LRKLNLNNNNIDA-ISETCFFNSS 669
           +  D  +     +D Y Y ++                R + L+   ++  I       ++
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516

Query: 670 QLQIINLSFNRLEK----------LPERLFNTFLYTNYDMAPNLVFQSHLSGHRC 714
              I+N    +L+             ERL N  L    D  P +      S +  
Sbjct: 517 SGSILNT-LQQLKFYKPYICDNDPKYERLVNAIL----DFLPKIEENLICSKYTD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.5 bits (182), Expect = 7e-14
 Identities = 110/631 (17%), Positives = 194/631 (30%), Gaps = 175/631 (27%)

Query: 98  DTMIDDFPYPCRCKKMSESQLAM----DCDN-VAFPNGEYPT-------LPYGLNLVTFS 145
           D  +D+F     CK + +   ++    + D+ +   +    T       L     +V   
Sbjct: 27  DAFVDNFD----CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--- 79

Query: 146 QRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLS--DKL------FSPH---------- 187
           Q++V   +     F  S I   +   S      +   D+L      F+ +          
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 188 -RDTLQELRLADNLFGDSLNPIFSTSEFHG--------LV-----NLRILDLSDNQI--- 230
            R  L ELR A N+               G        +      + ++    D +I   
Sbjct: 140 LRQALLELRPAKNVL------------IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 231 ----KAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSF 286
                   E +L+    LL  ++D N +TS    S N    +  +     R         
Sbjct: 188 NLKNCNSPETVLEMLQKLL-YQIDPN-WTSRSDHSSNIKLRIHSIQAELRR--------L 237

Query: 287 LSQRWLER--IILRG-NRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLA 343
           L  +  E   ++L            AFN   KI +      R  K  +D       +   
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWN--AFNLSCKILLTT----R-FKQVTD-----FLSAAT 285

Query: 344 KIHILNLGYNRLNKLNSDTFQGTH---ITIFSFF--QDFQKLKSLDLNGN-FLINLESTG 397
             HI       L+  +S T   T     ++   +     Q L    L  N   +++ +  
Sbjct: 286 TTHI------SLDH-HSMTL--TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 398 LED---TLDN-LNVRDNQITTLSSSALN----------YKLLTKLDLSHN---------- 433
           + D   T DN  +V  +++TT+  S+LN          +  L+    S +          
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 434 -NLKELEPTAFTNVPTLLH----LNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
            ++ + +     N    LH    +         S+P    +   KLE  +  A     + 
Sbjct: 397 FDVIKSDVMVVVN---KLHKYSLVEKQPKESTISIPSIYLELKVKLE--NEYALHRSIVD 451

Query: 489 QYQF------DELLNL---KYLC--LAHNHLTEIPEMMFKNLLNLTYLDLS--NNNIVNL 535
            Y        D+L+     +Y    + H HL  I       L  + +LD       I + 
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGH-HLKNIEHPERMTLFRMVFLDFRFLEQKIRH- 509

Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLF-PSSFT 594
              + +       L+    +L  +K  Y    + P    L      N  L +L       
Sbjct: 510 -DSTAWNASG-SILNT-LQQLKFYK-PYI-CDNDPKYERLV-----NAILDFLPKIEENL 559

Query: 595 IHSK-LKTLKLAFNKFNYFPKELILGLSYLQ 624
           I SK    L++A         E I   ++ Q
Sbjct: 560 ICSKYTDLLRIALM----AEDEAIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 5e-04
 Identities = 53/370 (14%), Positives = 112/370 (30%), Gaps = 121/370 (32%)

Query: 1   MRRLFDSIVHLSILLVSIVQVSSEPCDTMIDDFPYPCR-------------CKKMSESQL 47
           +RRL  S  + + LLV ++ V +       + F   C+                 + + +
Sbjct: 234 LRRLLKSKPYENCLLV-LLNVQNA---KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 48  AMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQI--LPMQ----------IFSSSVSSE 95
           ++D  ++        T     +L     +++  +   LP +          I + S+   
Sbjct: 290 SLDHHSMTL------TPDEVKSL--LL-KYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 96  PCDTMIDDFPYPCRCKKMSES-QLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQIL 154
                 D++ +   C K++   + +++                 L    + + +    + 
Sbjct: 341 LA--TWDNWKHV-NCDKLTTIIESSLNV----------------LEPAEYRKMFDRLSVF 381

Query: 155 PMQIFSSSDIPIRRL-----DFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIF 209
           P     S+ IP   L     D   + +  + +KL   H+ +L E +  +           
Sbjct: 382 P----PSAHIPTILLSLIWFDVIKSDVMVVVNKL---HKYSLVEKQPKE----------- 423

Query: 210 STSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDH----NRFTSIPSVSLNGP 265
           ST     +     L+L                +N   L   H    + +    +   +  
Sbjct: 424 STISIPSI----YLEL------------KVKLENEYAL---HRSIVDHYNIPKTFDSDDL 464

Query: 266 RALRILSMAYNRIG--------TLKADSF----LSQRWLERIILRGNRLTTIEGGAFNGL 313
               +    Y+ IG          +   F    L  R+LE+ I   +      G   N L
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524

Query: 314 A-----KIHI 318
                 K +I
Sbjct: 525 QQLKFYKPYI 534

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 56/293 (19%), Positives = 99/293 (33%), Gaps = 56/293 (19%)

Query: 425 LTKLDLSHNNL-----KELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL 479
           +T LDLS NNL      EL         ++  LNLS N    SL     D L        
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN----SLGFKNSDEL-------- 71

Query: 480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTE-----IPEMMFKNLLNLTYLDLSNNNIVN 534
               L +IP        N+  L L+ N L+      + + +      +T LDL  N+  +
Sbjct: 72  -VQILAAIPA-------NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123

Query: 535 LRVGSLYGL-----PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT--- 586
                          S+  L+L  N L     D          +++  LNL  N L    
Sbjct: 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183

Query: 587 --YLFPSSFTIHSKLKTLKLAFNKFN-----YFPKELILGLSYLQEIDLSNNQLKTIDDY 639
              L     +I + + +L L+ N                  +++  ++L  N L      
Sbjct: 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243

Query: 640 DYGYL----PRLRKLNLNNNNIDAISETCFF-------NSSQLQIINLSFNRL 681
           +   L      L+ + L+ + +  +S+           N  ++ +++ +   +
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 54/295 (18%), Positives = 101/295 (34%), Gaps = 57/295 (19%)

Query: 401 TLDNLNVRDNQITTLSSSAL------NYKLLTKLDLSHNNLKELEPTAFTNV-----PTL 449
            + +L++  N + ++S+  L          +T L+LS N+L          +       +
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 450 LHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT 509
             LNLS N     L     D L            L +IP         +  L L  N  +
Sbjct: 83  TSLNLSGN----FLSYKSSDEL---------VKTLAAIP-------FTITVLDLGWNDFS 122

Query: 510 E-----IPEMMFKNLLNLTYLDLSNNNI----VNLRVGSLYGLP-SMKRLDLSFNKLTTF 559
                   +       ++T L+L  N++     +  +  L  +P ++  L+L  N L + 
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182

Query: 560 KGDYFNTKSKPNTSSLEELNLNNNELT-----YLFPSSFTIHSKLKTLKLAFNKFNYFP- 613
                        +S+  L+L+ N L       L     +I + + +L L  N  +    
Sbjct: 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242

Query: 614 ---KELILGLSYLQEIDLSNNQLKTIDDYDYGYL-------PRLRKLNLNNNNID 658
              K L   L +LQ + L  + +K +       L        ++  ++ N   I 
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 69.4 bits (170), Expect = 9e-13
 Identities = 58/351 (16%), Positives = 109/351 (31%), Gaps = 80/351 (22%)

Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED--- 400
            +  L+L  N L          T   I +F      + SL+L+GN   +L     ++   
Sbjct: 23  GVTSLDLSLNNLYS------ISTVELIQAFANTPASVTSLNLSGN---SLGFKNSDELVQ 73

Query: 401 -------TLDNLNVRDNQITTLSSSAL------NYKLLTKLDLSHNNLKELEPTAFTNV- 446
                   + +LN+  N ++  SS  L          +T LDL  N+      + F    
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 447 ----PTLLHLNLSRN-------AHLSSLPVGGFDPLKKLEVLDLA------------ATG 483
                ++  LNL  N         L             +  L+L             A  
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQ---ILAAIPANVNSLNLRGNNLASKNCAELAKF 190

Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLT-----EIPEMMFKNLLNLTYLDLSNNNI----VN 534
           L SIP        ++  L L+ N L      E+  +      ++  L+L  N +    + 
Sbjct: 191 LASIPA-------SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243

Query: 535 LRVGSLYGLPSMKRLDLSFNKLT--TFKGDYFNTKSKPNTSSLEELNLNNNELT-----Y 587
                   L  ++ + L ++ +   + +       + PN   +  ++ N  E+       
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303

Query: 588 LFPSSFTIHSKLKTLKLA-----FNKFNYFPKELILGLSYLQEIDLSNNQL 633
           +      +  K     L      F + +    E +     L+E   +   L
Sbjct: 304 ISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 44/309 (14%), Positives = 95/309 (30%), Gaps = 46/309 (14%)

Query: 166 IRRLDFSGNAL-----RRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNL 220
           +  L+ SGN+L       L   L +     +  L L+ N      +     +       +
Sbjct: 53  VTSLNLSGNSLGFKNSDELVQILAAIPA-NVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111

Query: 221 RILDLSDNQI-----KAIEEGILKGCDNLLELRMDHNRFTSIPSVSL-----NGPRALRI 270
            +LDL  N          ++       ++  L +  N      S  L       P  +  
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171

Query: 271 LSMAYNRIGTLKADSFLS-----QRWLERIILRGNRLTTIEGGAFNGLA------KIHIL 319
           L++  N + +                +  + L  N L   +  A            +  L
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL-KSYAELAYIFSSIPNHVVSL 230

Query: 320 NLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQK 379
           NL  N L+  + +       + L  +  + L Y+ +  ++ +  +     + + F + QK
Sbjct: 231 NLCLNCLHGPSLENL-KLLKDSLKHLQTVYLDYDIVKNMSKEQCKA----LGAAFPNIQK 285

Query: 380 LKSLDLNGNFLINLESTGLED-------TLDNLNVRDNQITTLSSSALNYKL------LT 426
           +  +D NG  +    S  + +         D  ++ +  +        N +       L 
Sbjct: 286 IILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELR 345

Query: 427 KLDLSHNNL 435
           +   +   L
Sbjct: 346 ESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 70/398 (17%), Positives = 115/398 (28%), Gaps = 97/398 (24%)

Query: 219 NLRILDLSDNQI-----KAIEEGILKGCDNLLELRMDHNRFTS-----IPSVSLNGPRAL 268
            +  LDLS N +       + +       ++  L +  N         +  +    P  +
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 269 RILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNK 328
             L+++ N +    +D  +         L     T            I +L+LG+N  + 
Sbjct: 83  TSLNLSGNFLSYKSSDELVK-------TLAAIPFT------------ITVLDLGWNDFSS 123

Query: 329 LNSDTFQGGAFNGLAKIHILNLGYNRLN----KLNSDTFQGTHITIFSFFQDFQKLKSLD 384
            +S  F+    N  A I  LNL  N L                            + SL+
Sbjct: 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN----------VNSLN 173

Query: 385 LNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNL-----KELE 439
           L GN L +     L   L ++                   +T LDLS N L      EL 
Sbjct: 174 LRGNNLASKNCAELAKFLASIP----------------ASVTSLDLSANLLGLKSYAELA 217

Query: 440 PTAFTNVPTLLHLNLSRN-------AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQF 492
               +    ++ LNL  N        +L  L     D LK L+ + L    +K++ + Q 
Sbjct: 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLL----KDSLKHLQTVYLDYDIVKNMSKEQC 273

Query: 493 DELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL-----PSMK 547
             L                    F N+  +  +D +   I       +  L         
Sbjct: 274 KALGA-----------------AFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKAD 316

Query: 548 RLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNEL 585
              L    L   +    N +       L E       L
Sbjct: 317 VPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 52/270 (19%), Positives = 96/270 (35%), Gaps = 55/270 (20%)

Query: 447 PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN 506
             +  L+LS N             L  +  ++L      + P        ++  L L+ N
Sbjct: 22  HGVTSLDLSLNN------------LYSISTVELIQ-AFANTPA-------SVTSLNLSGN 61

Query: 507 HLTE-----IPEMMFKNLLNLTYLDLSNNNI----VNLRVGSLYGLP-SMKRLDLSFNKL 556
            L       + +++     N+T L+LS N +     +  V +L  +P ++  LDL +N  
Sbjct: 62  SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 557 TTFKGDYFNTKSKPNTSSLEELNLNNNELT-----YLFPSSFTIHSKLKTLKLAFNKFN- 610
           ++     F        +S+  LNL  N+L       L      I + + +L L  N    
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181

Query: 611 ----YFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYL--------PRLRKLNLNNNNID 658
                  K L    + +  +DLS N    +    Y  L          +  LNL  N + 
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANL---LGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 659 AIS----ETCFFNSSQLQIINLSFNRLEKL 684
             S    +    +   LQ + L ++ ++ +
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 3/118 (2%)

Query: 445 NVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLA 504
               +  L L           G       LE L L   GL S+      +L  LK L L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELS 79

Query: 505 HNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR-VGSLYGLPSMKRLDLSFNKLTTFKG 561
            N +    +M+ + L NLT+L+LS N + ++  +  L  L  +K LDL   ++T    
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.5 bits (147), Expect = 6e-11
 Identities = 37/187 (19%), Positives = 58/187 (31%), Gaps = 51/187 (27%)

Query: 368 ITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTK 427
           I +    +    ++ L L+     + +  GL     N                    L  
Sbjct: 14  IHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVN--------------------LEF 53

Query: 428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
           L L +  L  +                                L KL+ L+L+   +   
Sbjct: 54  LSLINVGLISVS---------------------------NLPKLPKLKKLELSENRIFGG 86

Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPEMM-FKNLLNLTYLDLSNNNIVNL---RVGSLYGL 543
                ++L NL +L L+ N L +I  +   K L  L  LDL N  + NL   R      L
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146

Query: 544 PSMKRLD 550
           P +  LD
Sbjct: 147 PQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 12/143 (8%)

Query: 513 EMMFKNLLNLTYLDLSNNNIVNLRVGSLYG-LPSMKRLDLSFNKLTTFKGDYFNTKSKPN 571
           E+  +    +  L L N    + ++  L     +++ L L    L +           P 
Sbjct: 17  ELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-------LPK 69

Query: 572 TSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL-GLSYLQEIDLSN 630
              L++L L+ N +             L  L L+ NK         L  L  L+ +DL N
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

Query: 631 NQLKTIDDYDY---GYLPRLRKL 650
            ++  ++DY       LP+L  L
Sbjct: 130 CEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 571 NTSSLEELNLNNNELTYLFPSSFTIH-SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS 629
             +++ EL L+N +         T     L+ L L            +  L  L++++LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79

Query: 630 NNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE-TCFFNSSQLQIINLSFNRLEKLPE 686
            N++    D     LP L  LNL+ N +  IS          L+ ++L    +  L +
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 47/190 (24%), Positives = 67/190 (35%), Gaps = 50/190 (26%)

Query: 344 KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLD 403
            + + N     + +L  D  +     I     +F  L+ L L    LI++ +      L 
Sbjct: 15  HLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN------LP 68

Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL 463
            L                   L KL+LS N +          +P L HLNLS N  L  +
Sbjct: 69  KL-----------------PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDI 110

Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIP---EMMFKNLL 520
                +PLKKLE                      LK L L +  +T +    E +FK L 
Sbjct: 111 --STLEPLKKLE---------------------CLKSLDLFNCEVTNLNDYRESVFKLLP 147

Query: 521 NLTYLDLSNN 530
            LTYLD  + 
Sbjct: 148 QLTYLDGYDR 157

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
           +R L            +  +     L+ L L +         + S S    L  L+ L+L
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-------LISVSNLPKLPKLKKLEL 78

Query: 226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS-LNGPRALRILSMAYNRI 278
           S+N+I    + + +   NL  L +  N+   I ++  L     L+ L +    +
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 233 IEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP-RALRILSMAYNRIGTLKADSFLSQRW 291
             E   +    + EL +D+ +        L      L  LS+    + ++   +      
Sbjct: 15  HLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPK 72

Query: 292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNS 331
           L+++ L  NR+          L  +  LNL  N+L  +++
Sbjct: 73  LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 5/113 (4%)

Query: 450 LHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT 509
           L L+ SR+        G  D  ++LE L     GL SI      +L  LK L L+ N ++
Sbjct: 22  LVLDNSRSNEGKLE--GLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVS 77

Query: 510 EIPEMMFKNLLNLTYLDLSNNNIVNLR-VGSLYGLPSMKRLDLSFNKLTTFKG 561
              E++ +   NLT+L+LS N I +L  +  L  L ++K LDL   ++T    
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 45/158 (28%), Positives = 66/158 (41%), Gaps = 31/158 (19%)

Query: 375 QDFQKLKSLDLNGNFLINLESTGLEDTLDN---LNVRDNQITTLSSSALNYKLLTKLDLS 431
           +    +K L L+ +     +  GL D  +    L+  +  +T++++     KL  KL+LS
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKL-KKLELS 72

Query: 432 HNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ 491
            N +           P L HLNLS N  +  L     +PLKKLE                
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDL--STIEPLKKLE---------------- 113

Query: 492 FDELLNLKYLCLAHNHLTEIP---EMMFKNLLNLTYLD 526
                NLK L L +  +T +    E +FK L  LTYLD
Sbjct: 114 -----NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 12/143 (8%)

Query: 513 EMMFKNLLNLTYLDLSNNNIVNLRV-GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPN 571
           E+  +   ++  L L N+     ++ G       ++ L      LT+           P 
Sbjct: 10  ELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-------LPK 62

Query: 572 TSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL-GLSYLQEIDLSN 630
            + L++L L++N ++            L  L L+ NK         L  L  L+ +DL N
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 631 NQLKTIDDYDY---GYLPRLRKL 650
            ++  ++DY       LP+L  L
Sbjct: 123 CEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 571 NTSSLEELNLNNNELTYL-FPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLS 629
             S ++EL L+N+               +L+ L              +  L+ L++++LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 630 NNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE-TCFFNSSQLQIINLSFNRLEKLPE 686
           +N++    +      P L  LNL+ N I  +S          L+ ++L    +  L +
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILD 224
            ++ L    +       +  +   + L+ L   +         + S +    L  L+ L+
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-------LTSIANLPKLNKLKKLE 70

Query: 225 LSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS-LNGPRALRILSMAYN 276
           LSDN++    E + + C NL  L +  N+   + ++  L     L+ L +   
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 234 EEGILKGCDNLLELRMDHNRFTSIPSVSLNGP-RALRILSMAYNRIGTLKADSFLSQRWL 292
            E   +   ++ EL +D++R        L      L  LS     + ++   +      L
Sbjct: 9   LELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL 66

Query: 293 ERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNS 331
           +++ L  NR++            +  LNL  N++  L++
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 66.6 bits (163), Expect = 9e-13
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 33/163 (20%)

Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
            E     L+     I  + ++    K    L LS NN++++                   
Sbjct: 23  TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS------------------ 64

Query: 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLN-LKYLCLAHNHLTEIPEMMF 516
                        ++ L +L L    +K I     D + + L+ L +++N +  +     
Sbjct: 65  ---------SLSGMENLRILSLGRNLIKKIEN--LDAVADTLEELWISYNQIASLSG--I 111

Query: 517 KNLLNLTYLDLSNNNIVNLR-VGSLYGLPSMKRLDLSFNKLTT 558
           + L+NL  L +SNN I N   +  L  L  ++ L L+ N L  
Sbjct: 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 40/215 (18%), Positives = 72/215 (33%), Gaps = 35/215 (16%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLS-RNAHLSSLPVGGFDPLKKLEVLDLAATG 483
           + K     + ++  E            + L      +  +       LK  + L L+   
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNN 59

Query: 484 LKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL 543
           ++ I       + NL+ L L  N + +I E +      L  L +S N I +L    +  L
Sbjct: 60  IEKISS--LSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKL 114

Query: 544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK 603
            +++ L +S NK+T +               +++L   +                L+ L 
Sbjct: 115 VNLRVLYMSNNKITNWG-------------EIDKLAALDK---------------LEDLL 146

Query: 604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD 638
           LA N      KE      Y  E+      LK +D 
Sbjct: 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 40/205 (19%)

Query: 506 NHLTEIPEMMFKNLLNLTYLDLSN--NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDY 563
           + +    E           ++L      I  +   +L  L + K L LS N +       
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKISS-- 65

Query: 564 FNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYL 623
                     +L  L+L  N +  +          L  +                    L
Sbjct: 66  -----LSGMENLRILSLGRNLIKKI--------ENLDAV-----------------ADTL 95

Query: 624 QEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE-TCFFNSSQLQIINLSFNRLE 682
           +E+ +S NQ+ ++   +   L  LR L ++NN I    E        +L+ + L+ N L 
Sbjct: 96  EELWISYNQIASLSGIEK--LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

Query: 683 KLPERLFNTFLYTNYDMA--PNLVF 705
              +    T  Y    +   PNL  
Sbjct: 154 NDYKENNATSEYRIEVVKRLPNLKK 178

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 33/201 (16%), Positives = 59/201 (29%), Gaps = 43/201 (21%)

Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHIT-IFSFFQDFQKLKSLDLNGNFLINLESTGL 398
           + +              +          I  + +     +  K L L+ N +  +    L
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SL 66

Query: 399 ED--TLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSR 456
                L  L++  N I  + +       L +L +S+N +  L                  
Sbjct: 67  SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS----------------- 109

Query: 457 NAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ-YQFDELLNLKYLCLAHNHLTEIP--- 512
                     G + L  L VL ++   + +  +  +   L  L+ L LA N L       
Sbjct: 110 ----------GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159

Query: 513 -------EMMFKNLLNLTYLD 526
                    + K L NL  LD
Sbjct: 160 NATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 13/140 (9%)

Query: 168 RLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSD 227
            L      + ++   L +      + L L+ N        I   S   G+ NLRIL L  
Sbjct: 29  ELHGMIPPIEKMDATLSTLK--ACKHLALSTNN-------IEKISSLSGMENLRILSLGR 79

Query: 228 NQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFL 287
           N IK I E +    D L EL + +N+  S+    +     LR+L M+ N+I        L
Sbjct: 80  NLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 288 SQ-RWLERIILRGNRLTTIE 306
           +    LE ++L GN L    
Sbjct: 137 AALDKLEDLLLAGNPLYNDY 156

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 35/221 (15%), Positives = 71/221 (32%), Gaps = 62/221 (28%)

Query: 225 LSDNQIKAIEEGILKGCDNL--LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK 282
              + I+  EE           +EL         + + +L+  +A + L+          
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLA---------- 54

Query: 283 ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL 342
                         L  N +  I     +G+  + IL+LG N + K+             
Sbjct: 55  --------------LSTNNIEKISS--LSGMENLRILSLGRNLIKKIE------NLDAVA 92

Query: 343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES-TGLED- 400
             +  L + YN++  L+               +    L+ L ++ N + N      L   
Sbjct: 93  DTLEELWISYNQIASLSG-------------IEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 401 -TLDNLNVRDNQITT---LSSSALNYKL--------LTKLD 429
             L++L +  N +      +++   Y++        L KLD
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 10/101 (9%)

Query: 166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL 225
           +R L    N ++++ +       DTL+EL ++ N        I S S    LVNLR+L +
Sbjct: 72  LRILSLGRNLIKKIEN--LDAVADTLEELWISYNQ-------IASLSGIEKLVNLRVLYM 122

Query: 226 SDNQIKAIEE-GILKGCDNLLELRMDHNRFTSIPSVSLNGP 265
           S+N+I    E   L   D L +L +  N   +    +    
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 52/338 (15%), Positives = 100/338 (29%), Gaps = 56/338 (16%)

Query: 393 LESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHL 452
                  D L+N      ++  L    L    L      H   +    +A     +L  L
Sbjct: 19  GCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVL-SSLRQL 77

Query: 453 NLSRN----AHLSSLPVGGFDPLKKLEVLDLA-----ATGLKSIPQYQFDELLNLKYLCL 503
           NL+         + +          L+ ++LA       GL+++        L  + L L
Sbjct: 78  NLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL----LPVFLRARKLGL 133

Query: 504 AHNHLTE-----IPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY-GL---PSMKRLDLSFN 554
             N L       + +++  +   +T L LSNN +    V  L  GL    S+  L L   
Sbjct: 134 QLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193

Query: 555 KLTTFKGDYFNTKSKPNTSSLEELNLNNNELTY----LFPSSFTIHSKLKTLKLAFNKFN 610
            L     +    +   N   L+ELN+  N            +   H  L+ L L FN+ +
Sbjct: 194 GLGDEGLELLAAQLDRNR-QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252

Query: 611 YFPKELIL-------GLSYLQEIDLSNNQL---------------KTIDDYDYGYLPRLR 648
              ++++        G + +         +                + D         L 
Sbjct: 253 SEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELL 312

Query: 649 KLNLNNNNID-----AISETCFFNSSQLQIINLSFNRL 681
             +L ++          ++        ++ +       
Sbjct: 313 LRDLEDSRGATLNPWRKAQLLRVEGE-VRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 54/305 (17%), Positives = 107/305 (35%), Gaps = 45/305 (14%)

Query: 166 IRRLDFSGNAL-----RRLSDKLFSPHRDTLQELRLADNLFGD-SLNPIFSTSEFHGLVN 219
           +R+L+ +G  +       ++  L S     L E+ LA        L  +         + 
Sbjct: 74  LRQLNLAGVRMTPVKCTVVAAVLGSGRH-ALDEVNLASCQLDPAGLRTLLP-----VFLR 127

Query: 220 LRILDLSDNQI-----KAIEEGILKGCDNLLELRMDHNRFTSIP----SVSLNGPRALRI 270
            R L L  N +     K + + +L     +  LR+ +N  T+         L G  ++  
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187

Query: 271 LSMAYNRIG----TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIH----ILNLG 322
           LS+ +  +G     L A      R L+ + +  N        A    A+ H    +L+L 
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247

Query: 323 YNRLN----KLNSDTFQGGAFNGLAKIHILNLGYNRLN----KLNSDTFQGTHITIFSFF 374
           +N L+    ++  D   GGA  G A++ +       ++     + S+  +  +    +  
Sbjct: 248 FNELSSEGRQVLRDL--GGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARV 305

Query: 375 QDFQKLKSLDLNGNFLINL------ESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKL 428
           Q   +L   DL  +    L      +   +E  +  L  +     + S S  + +     
Sbjct: 306 QRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGA 365

Query: 429 DLSHN 433
              H+
Sbjct: 366 GHHHH 370

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 63/483 (13%), Positives = 136/483 (28%), Gaps = 83/483 (17%)

Query: 237 ILKGCDNLLELRMDHNRFT--SIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQ--RWL 292
           I      L  +       +   +  ++      L  L +      T      +    R +
Sbjct: 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKI 166

Query: 293 ERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGY 352
           + +++  +  +  +G   + LA+                             + +LN   
Sbjct: 167 KTLLMEESSFSEKDGKWLHELAQ-------------------------HNTSLEVLNFYM 201

Query: 353 NRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES-----TGLEDTLDNLNV 407
               K++    +       +  ++ + L S+ +    ++ L         LE+       
Sbjct: 202 TEFAKISPKDLE-------TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN 254

Query: 408 RDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGG 467
            D  +     + +  + L +L LS+    E+ P  F     +  L+L      +      
Sbjct: 255 EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYALLETEDHCTL 313

Query: 468 FDPLKKLEVLDLAA----TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE---------- 513
                 LEVL+        GL+ + QY       LK L +      +  E          
Sbjct: 314 IQKCPNLEVLETRNVIGDRGLEVLAQY----CKQLKRLRIERGADEQGMEDEEGLVSQRG 369

Query: 514 --MMFKNLLNLTYLDLSNNNIVNLRVGSLY-GLPSMKRLDLSF----NKLTTFKGDYFNT 566
              + +    L Y+ +  ++I N  + S+   L ++    L       ++T    D    
Sbjct: 370 LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429

Query: 567 KSKPNTSSLEELNLNNN-------ELTYLFPSSFTIHSKLKTLKLAFNKF-NYFPKELIL 618
                   L                L+Y+   S      ++ + L +    +    E   
Sbjct: 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS----PNVRWMLLGYVGESDEGLMEFSR 485

Query: 619 GLSYLQEIDLSNNQLKTID-DYDYGYLPRLRKLNLNNNNI---DAISETCFFNSSQLQII 674
           G   LQ++++                LP LR L +                     +++I
Sbjct: 486 GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545

Query: 675 NLS 677
              
Sbjct: 546 PSR 548

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 49/313 (15%), Positives = 96/313 (30%), Gaps = 53/313 (16%)

Query: 404 NLNVRDNQITTLSSSALNYKLLTKLDLS---HNNLKELEPTAFTNV------------PT 448
           ++ +      T    +  +  L  L L       +  L P  +                 
Sbjct: 54  HVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113

Query: 449 LLHLNLSR----NAHLSSLPVGGFDPLKKLEVLDLAA------TGLKSIPQYQFDELLNL 498
           L  ++  R    +  L  L          LE L L         GL SI  +       +
Sbjct: 114 LKSVHFRRMIVSDLDLDRLAKARA---DDLETLKLDKCSGFTTDGLLSIVTH----CRKI 166

Query: 499 KYLCLAHNHLTEIP----EMMFKNLLNLTYLDLSNNNIVNLRVGSL----YGLPSMKRLD 550
           K L +  +  +E        + ++  +L  L+        +    L        S+  + 
Sbjct: 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226

Query: 551 LSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN 610
           +   ++    G +   K+  N       +LN +        +     KL  L L++   N
Sbjct: 227 VGDFEILELVGFF---KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283

Query: 611 YFPKELILGLSYLQEIDLSNNQLKTIDDYDY-GYLPRLRKLNLNN----NNIDAISETCF 665
             P  L    + ++++DL    L+T D        P L  L   N      ++ +++ C 
Sbjct: 284 EMP-ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC- 341

Query: 666 FNSSQLQIINLSF 678
               QL+ + +  
Sbjct: 342 ---KQLKRLRIER 351

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 64/490 (13%), Positives = 148/490 (30%), Gaps = 65/490 (13%)

Query: 127 FPNGEYPTLPYGLNLVTFS---QRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKL 183
           FP      L    +   F+     W G+    ++  SSS   +  +      +     +L
Sbjct: 65  FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124

Query: 184 FSPHRDTLQELRLA--DNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIE----EGI 237
            +      + L L+  +    D L  I +        NL+ LDL ++ +  +        
Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAA-----TCRNLKELDLRESDVDDVSGHWLSHF 179

Query: 238 LKGCDNL--LELRMDHNRFT--SIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLE 293
                +L  L +    +  +  ++  +    P  L+ L +         A        LE
Sbjct: 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPN-LKSLKLNRAVPLEKLATLLQRAPQLE 238

Query: 294 RIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQG--GAFNGLAKIHILNLG 351
            +   G          ++GL+           L+             ++  +++  LNL 
Sbjct: 239 ELGTGGYTAEV-RPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297

Query: 352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNF-----------LINLESTGLED 400
           Y  +              +        KL+ L +                 +L    +  
Sbjct: 298 YATV----------QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 401 TLDNLNVRDNQIT--TLSSSALNYKLLTKLDLSHNNLKELEPTAF-TNVPTLLHLNLSRN 457
           +   +   +  +T   L S ++    L  +      +          N P +    L   
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407

Query: 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK 517
              +   +        LE LD    G  +I ++      +L+ L L+     ++ E +  
Sbjct: 408 EPKAPDYLT-------LEPLD---IGFGAIVEH----CKDLRRLSLSGLLTDKVFEYIGT 453

Query: 518 NLLNLTYLDLSNNNIVNLRVGSL-YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLE 576
               +  L ++     +L +  +  G  S+++L++              +K +    ++ 
Sbjct: 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE----TMR 509

Query: 577 ELNLNNNELT 586
            L +++  ++
Sbjct: 510 SLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 70/447 (15%), Positives = 141/447 (31%), Gaps = 71/447 (15%)

Query: 288 SQRWLE-----RIILRGNRLTTIEGGA----FNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
            + W E     R  +       +        F  +  + +    +     L  D + G  
Sbjct: 34  CKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYV 93

Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGL 398
           +  +  +      Y  L ++       T   +    + F+  K L L+     +  + GL
Sbjct: 94  YPWIEAMS---SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGL 148

Query: 399 ED------TLDNLNVRDNQITTLSSSAL-----NYKLLTKLDLS-------HNNLKELEP 440
                    L  L++R++ +  +S   L      Y  L  L++S        + L+ L  
Sbjct: 149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL-- 206

Query: 441 TAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA------TGLKSIPQYQFDE 494
              T  P L  L L+R   L  L         +LE L            + S        
Sbjct: 207 --VTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263

Query: 495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL-YGLPSMKRLDLSF 553
              L+ L    + +      ++     LT L+LS   + +  +  L    P ++RL +  
Sbjct: 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL- 322

Query: 554 NKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSS----------FTIHSKLKTLK 603
                  G      +  +   L EL +  +E   + P+                KL+++ 
Sbjct: 323 -DYIEDAGLEVLASTCKD---LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378

Query: 604 LAFNKFNYFP-KELILGLSYLQEIDLSNNQLKTIDDY-----DYG------YLPRLRKLN 651
               +        +      +    L   + K  D       D G      +   LR+L+
Sbjct: 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438

Query: 652 LNNNNIDAISETCFFNSSQLQIINLSF 678
           L+    D + E     + ++++++++F
Sbjct: 439 LSGLLTDKVFEYIGTYAKKMEMLSVAF 465

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 74/508 (14%), Positives = 161/508 (31%), Gaps = 85/508 (16%)

Query: 199 NLFGDSLNPIFSTSEFHGLVNLRILDLSD---------------NQIKAIEEGILKGCDN 243
            +F  +   +   +       +R ++L                   +    E +      
Sbjct: 47  KVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW 106

Query: 244 LLELRMDHNRFT--SIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQ--RWLERIILRG 299
           L E+R+     T   +  ++ +     ++L ++     +    + ++   R L+ + LR 
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKN-FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165

Query: 300 NRLTTIEGGAFNGLAKIHILNLGYNRLNKLN-SDTFQGGAFNGLAKI--HILNLGYNRLN 356
           + +  + G   +           Y  L  LN S      +F+ L ++     NL   +LN
Sbjct: 166 SDVDDVSGHWLSHFPD------TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219

Query: 357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS 416
           +            + +  Q   +L+ L   G                   VR +  + LS
Sbjct: 220 RAVPLE------KLATLLQRAPQLEELGTGGYTAE---------------VRPDVYSGLS 258

Query: 417 SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEV 476
            +    K L  L    + +    P  ++    L  LNLS     S   V       KL+ 
Sbjct: 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR 318

Query: 477 LDLAA----TGLKSIPQYQFDELLNLKYLCLAHNHLTEIP----------EMMFKNLLNL 522
           L +       GL+ +         +L+ L +  +    +             +      L
Sbjct: 319 LWVLDYIEDAGLEVLAST----CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL 374

Query: 523 TYLDLSNNNIVNLRVGSL-YGLPSMKRLDLSFNKLTTFKGDYFNTKS--------KPNTS 573
             +      + N  + ++    P+M R  L    +     DY   +           +  
Sbjct: 375 ESVLYFCRQMTNAALITIARNRPNMTRFRLC--IIEPKAPDYLTLEPLDIGFGAIVEHCK 432

Query: 574 SLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKF-NYFPKELILGLSYLQEIDLSNNQ 632
            L  L+L+      +F    T   K++ L +AF    +     ++ G   L+++++ +  
Sbjct: 433 DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492

Query: 633 LKTIDD---YDYGYLPRLRKLNLNNNNI 657
               D     +   L  +R L +++ ++
Sbjct: 493 F--GDKALLANASKLETMRSLWMSSCSV 518

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 52.6 bits (125), Expect = 2e-07
 Identities = 47/271 (17%), Positives = 91/271 (33%), Gaps = 15/271 (5%)

Query: 327 NKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLN 386
            KL ++  + G    L ++        +   L+ D  +     +       +KL SL   
Sbjct: 54  GKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGV-NLMDKILKDKKLPSLKQI 112

Query: 387 GNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNV 446
                  E     D  D +     +               + ++S     +L P     +
Sbjct: 113 TIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAM 171

Query: 447 PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVL--DLAATGLKSIPQYQFDELLNLKYLCLA 504
           P L +L +    +LS +       LK LE++   L  + ++ I       L  L      
Sbjct: 172 PLLNNLKIKGTNNLS-IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV 230

Query: 505 HNHLTEIPEMMFKNLL------NLTYLDLSNNNIVNLRVGSLYG---LPSMKRLDLSFNK 555
            ++  +    +F+ L       NL +L + +    N+ V        LP ++ +D+S   
Sbjct: 231 EDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290

Query: 556 LTTFKGDYFNTKSKPNTSSLEELNLNNNELT 586
           LT  +G             L+ +N+  N L+
Sbjct: 291 LTD-EGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 4e-04
 Identities = 25/160 (15%), Positives = 58/160 (36%), Gaps = 21/160 (13%)

Query: 370 IFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL---NYKLLT 426
           +         L +L + G   +++        L +L +    +       +   +   L 
Sbjct: 164 LSPVLDAMPLLNNLKIKGTNNLSIGKKPRP-NLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 427 KLDLS--------HNNLKELEPT-AFTNVPTLLHLNLSRNAHLSSLP--VGGFDPLKKLE 475
           KL L           ++    P  +    P L  L +      + +       D L +LE
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 476 VLDLAA-----TGLKSIPQYQFDELLNLKYLCLAHNHLTE 510
            +D++A      G + +     D++ +LK++ + +N+L++
Sbjct: 283 TMDISAGVLTDEGARLLLD-HVDKIKHLKFINMKYNYLSD 321

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 51/399 (12%), Positives = 127/399 (31%), Gaps = 75/399 (18%)

Query: 302 LTTIEGGAFNGLAKIHILNLGYNRLNKLNSD----TFQGGAFNGLAKIHILNLGYNRLNK 357
           L      A      +  LN+     +         + Q   F+    +    +      K
Sbjct: 31  LPAKTIYALGENIDLTGLNVTGKYDDGKQRPVKVTSEQISGFSSSVPVDKQEVTITIEGK 90

Query: 358 LNSDTFQGTHITI--FSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTL 415
             S +   + + +      +  +    + L                        N + ++
Sbjct: 91  QKSFSVHISPVRVENGVLTEILKGYNEIILP-----------------------NSVKSI 127

Query: 416 SSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLE 475
              A     + K+ L+   LK +   AF N  T+  +                       
Sbjct: 128 PKDAFRNSQIAKVVLN-EGLKSIGDMAFFNS-TVQEIVFP-------------------- 165

Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL 535
                 + L+ + +  F    NLK   L+   +T++P   F     +  + L    +  +
Sbjct: 166 ------STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLLP-VTLKEI 217

Query: 536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTI 595
              +      +K +++    ++T   + F        S +  + L N  +T +   +F  
Sbjct: 218 GSQAFLKTSQLKTIEIP-ENVSTIGQEAF------RESGITTVKLPNG-VTNIASRAFYY 269

Query: 596 HSKLKTLKLAFNKFNYFPKELI-----LGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKL 650
             +L  +    + FN  P+ +I      G   L   ++  + ++ +     G   ++ +L
Sbjct: 270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQL 328

Query: 651 NLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
            +   N+  I+ + F N+  ++ + +      ++ E+++
Sbjct: 329 TI-PANVTQINFSAFNNTG-IKEVKVEGTTPPQVFEKVW 365

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 47/326 (14%), Positives = 104/326 (31%), Gaps = 54/326 (16%)

Query: 300 NRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQ--------GGAFNGLAKIHILNLG 351
            ++T+ +   F+    +    +      K  S +          G     L   + + L 
Sbjct: 62  VKVTSEQISGFSSSVPVDKQEVTITIEGKQKSFSVHISPVRVENGVLTEILKGYNEIILP 121

Query: 352 YNRLNKLNSDTFQGTHITIFSF-----------FQDFQKLKSLDLNGNFLINLES----- 395
            N +  +  D F+ + I                F +   ++ +      L  L+      
Sbjct: 122 -NSVKSIPKDAFRNSQIAKVVLNEGLKSIGDMAFFN-STVQEIVFPST-LEQLKEDIFYY 178

Query: 396 -TGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
              L+      ++   +IT L +S   Y  + ++ L    LKE+   AF     L  + +
Sbjct: 179 CYNLK----KADLSKTKITKLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEI 233

Query: 455 SRNAHLSSLPVGGFD--PLKKLEVLDLAATGLKSIPQYQFDELLNLKYL-----CLAHNH 507
             N  +S++    F    +  +++ +    G+ +I    F     L  +         + 
Sbjct: 234 PEN--VSTIGQEAFRESGITTVKLPN----GVTNIASRAFYYCPELAEVTTYGSTFNDDP 287

Query: 508 LTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTK 567
              I     +    L   ++   +I  L  G L G   + +L +    +T      F   
Sbjct: 288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIP-ANVTQINFSAF--- 342

Query: 568 SKPNTSSLEELNLNNNELTYLFPSSF 593
              N + ++E+ +       +F   +
Sbjct: 343 ---NNTGIKEVKVEGTTPPQVFEKVW 365

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 381 KSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEP 440
           ++LDL G  L +      ++    LN R     TL     N   L  L+LS+N L  L+ 
Sbjct: 130 QALDLKG--LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDD 187

Query: 441 --TAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLK--KLEVLDL 479
             +     P L  LNLS N  L S      D +K  KLE L L
Sbjct: 188 MSSIVQKAPNLKILNLSGN-ELKSE--RELDKIKGLKLEELWL 227

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 37/230 (16%), Positives = 75/230 (32%), Gaps = 13/230 (5%)

Query: 468 FDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAH----NHLTEIPEMMFKNLLNLT 523
            D    L+VLD++   +K              Y+ +A+       + +   + K    L 
Sbjct: 45  RDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLE 104

Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
            + LS   I N+   +  G  ++K   +          +            L   +    
Sbjct: 105 KVILSEK-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF 163

Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDY-- 641
                   +F     L+T             E++      ++I+        +D+ D+  
Sbjct: 164 -KNRWEHFAFIEGEPLETTIQ-VGAMGKLEDEIMKAGLQPRDINFLTI-EGKLDNADFKL 220

Query: 642 --GYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
              Y+P L  L+++  N   I +  F     L  I L  + L+ + +R+F
Sbjct: 221 IRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP-HNLKTIGQRVF 269

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 55/353 (15%), Positives = 114/353 (32%), Gaps = 51/353 (14%)

Query: 179 LSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGIL 238
           L   +     +++  L L   L  +    +          +L++LD+S+ +IK       
Sbjct: 15  LISMMTEEEANSITHLTLTGKLNAEDFRHLRDE-----FPSLKVLDISNAEIKMYSGKAG 69

Query: 239 KGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILR 298
              +           +  + +          + + A++ +          ++ LE++IL 
Sbjct: 70  TYPNGKF--------YIYMANF---------VPAYAFSNVVN---GVTKGKQTLEKVIL- 108

Query: 299 GNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKL 358
             ++  IE  AF G   + I  +       L  +       + +  I I          L
Sbjct: 109 SEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEAL----ADSVTAIFI---------PL 155

Query: 359 NSDTFQGTHITIFSF-FQDFQKLKSLDLNGNFLINLESTGLED--TLDNLNVRDNQITTL 415
            S            F F + + L++    G  +  LE   ++      ++N        L
Sbjct: 156 GSSDAYRFKNRWEHFAFIEGEPLETTIQVGA-MGKLEDEIMKAGLQPRDINFLTI-EGKL 213

Query: 416 SSSA-----LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP 470
            ++           L  LD+S  N   +    F     LL + L  N  L ++    F  
Sbjct: 214 DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSN 271

Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
             +L         + +I    F    NL+Y+    + +T + + +F N +   
Sbjct: 272 CGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 12/94 (12%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSL 575
             +   +  +D +++ I+++    + GL  ++++ L              ++ +    S+
Sbjct: 57  PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116

Query: 576 EELNL-NNNELTYLFPSSFTIHSKLKTLKLAFNK 608
            E+ + +   +T     +      LK L L+   
Sbjct: 117 LEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNH------LTEIP 512
             + LP  G     K++ +D   + + SI     + L  ++ + L   H      L  + 
Sbjct: 49  DYNHLP-TGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS 107

Query: 513 EMMFKNLLNLTYLDLSNN-NIVNLRVGSLYGLPSMKRLDLSFNKLTTFKG 561
           ++      ++  +++ +  N+ +  + +L+   ++K L LS       K 
Sbjct: 108 QLE-NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKE 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	719
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.81
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.79
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.78
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.68
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.47
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.63
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.55
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.39
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.35
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.01
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.99
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.93
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.89
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.52
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.47
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.3
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	89.1
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	86.3

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.7e-59  Score=541.66  Aligned_cols=561  Identities=25%  Similarity=0.339  Sum_probs=393.9

Q ss_pred             ccccccccccCCCCCCCCCCCC--chhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcccccchhccccEEE
Q psy16110        118 LAMDCDNVAFPNGEYPTLPYGL--NLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELR  195 (719)
Q Consensus       118 ~~~~c~~~~l~~~~~~~~p~~~--~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~  195 (719)
                      ..++|.+..++     ++|..+  .+..+.+..++++.+|...|... .+|++|+|++|.++.++...|. .+++|++|+
T Consensus         7 ~~~~cs~~~L~-----~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~   79 (680)
T 1ziw_A            7 EVADCSHLKLT-----QVPDDLPTNITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGFNTISKLEPELCQ-KLPMLKVLN   79 (680)
T ss_dssp             SEEECCSSCCS-----SCCSCSCTTCSEEECCSSCCCCCCGGGGGGG-TTCSEEECCSSCCCCCCTTHHH-HCTTCCEEE
T ss_pred             CeeECCCCCcc-----ccccccCCCCcEEECCCCCCCCcCHHHHhCC-CcCcEEECCCCccCccCHHHHh-cccCcCEEE
Confidence            46899887776     333332  12333344444555555444433 3456666666655555554443 445566666


Q ss_pred             cCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCC
Q psy16110        196 LADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAY  275 (719)
Q Consensus       196 Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~  275 (719)
                      |++|.+++     +.+.+|+++++|++|+|++|++..+++..|+++++|++|++++|.++.+++..++++++|++|++++
T Consensus        80 L~~n~l~~-----l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  154 (680)
T 1ziw_A           80 LQHNELSQ-----LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN  154 (680)
T ss_dssp             CCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred             CCCCccCc-----cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence            66555553     2223455556666666666655555555555556666666666655555544555555666666666


Q ss_pred             CcCcccCCCccc--CCCccCEEEccCCCCcccCcccccCccc---------------------------CcEEEcCCCCC
Q psy16110        276 NRIGTLKADSFL--SQRWLERIILRGNRLTTIEGGAFNGLAK---------------------------IHILNLGYNRL  326 (719)
Q Consensus       276 n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~---------------------------L~~L~L~~n~l  326 (719)
                      |.++.+.+..+.  .+++|++|++++|.++++.+..|..+.+                           |++|++++|.+
T Consensus       155 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l  234 (680)
T 1ziw_A          155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL  234 (680)
T ss_dssp             SCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred             CcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence            655555444332  3355566666666555555554443332                           33333334433


Q ss_pred             CCcCCCccccccccCCC--CCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCC--cchhccC
Q psy16110        327 NKLNSDTFQGGAFNGLA--KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES--TGLEDTL  402 (719)
Q Consensus       327 ~~~~~~~~~~~~l~~l~--~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~--~~~~~~L  402 (719)
                      +++.+..     +..++  +|++|++++|+++.+.           +..+..+++|++|++++|.+..+.+  +..+++|
T Consensus       235 ~~~~~~~-----~~~l~~~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  298 (680)
T 1ziw_A          235 STTSNTT-----FLGLKWTNLTMLDLSYNNLNVVG-----------NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV  298 (680)
T ss_dssp             CEECTTT-----TGGGGGSCCCEEECTTSCCCEEC-----------TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTC
T ss_pred             cccChhH-----hhccCcCCCCEEECCCCCcCccC-----------cccccCcccccEeeCCCCccCccChhhhcCCCCc
Confidence            3333322     22222  2555555555544332           3345567788888888887776654  4556778


Q ss_pred             CEEEccCCccc---------cccc-CccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCC-CCCCCCCCCCCC
Q psy16110        403 DNLNVRDNQIT---------TLSS-SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAH-LSSLPVGGFDPL  471 (719)
Q Consensus       403 ~~L~l~~n~l~---------~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~-l~~l~~~~~~~l  471 (719)
                      +.|++++|...         .+.. ....+++|+.|++++|.+.++.+..|.++++|++|++++|.. +..++...|..+
T Consensus       299 ~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~  378 (680)
T 1ziw_A          299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL  378 (680)
T ss_dssp             CEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG
T ss_pred             cEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccc
Confidence            88888776433         2222 223478899999999999888888888899999999988832 344555545433


Q ss_pred             --CCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCC-CCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCE
Q psy16110        472 --KKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR  548 (719)
Q Consensus       472 --~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~  548 (719)
                        ++|+.|++++|+++++.+..|..+++|++|++++|.+. .++...|..+++|++|++++|++.++.+..|..+++|++
T Consensus       379 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~  458 (680)
T 1ziw_A          379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR  458 (680)
T ss_dssp             TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCE
T ss_pred             ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccccc
Confidence              58999999999999988888999999999999999987 466677889999999999999999988889999999999


Q ss_pred             EEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcCh--------hhhcCC
Q psy16110        549 LDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPK--------ELILGL  620 (719)
Q Consensus       549 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~l~~l  620 (719)
                      |++++|.+..+...   ...+..+++|++|++++|+++++.+..|..+++|++|++++|+++.++.        ..+.++
T Consensus       459 L~l~~n~l~~~~~~---p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l  535 (680)
T 1ziw_A          459 LMLRRVALKNVDSS---PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL  535 (680)
T ss_dssp             EECTTSCCBCTTCS---SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTC
T ss_pred             chhccccccccccC---CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCC
Confidence            99999988643211   1223457999999999999999988899999999999999999987633        237889


Q ss_pred             CCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhc-Ccccc-EEe
Q psy16110        621 SYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN-TFLYT-NYD  698 (719)
Q Consensus       621 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-~l~~L-~L~  698 (719)
                      ++|++|++++|+++.+++..|.++++|++|++++|+++++++..|..+++|+.|++++|+++.+++..|. .+++| .++
T Consensus       536 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~  615 (680)
T 1ziw_A          536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD  615 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEE
T ss_pred             CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEE
Confidence            9999999999999999988899999999999999999999999999999999999999999999999888 78999 999


Q ss_pred             cCCCceeeeccCCCccccC
Q psy16110        699 MAPNLVFQSHLSGHRCECA  717 (719)
Q Consensus       699 l~~N~l~~~~~~~~~C~c~  717 (719)
                      +++||+        .|+|+
T Consensus       616 l~~N~~--------~c~c~  626 (680)
T 1ziw_A          616 MRFNPF--------DCTCE  626 (680)
T ss_dssp             CTTCCC--------CBCCC
T ss_pred             ccCCCc--------ccCCc
Confidence            999999        89997

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-57  Score=520.90  Aligned_cols=542  Identities=22%  Similarity=0.282  Sum_probs=447.3

Q ss_pred             CCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCccc
Q psy16110        104 FPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKL  183 (719)
Q Consensus       104 ~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~  183 (719)
                      ++..|.|...   ...++|.+..++     .+|..                   +.    .++++|+|++|.|+.++...
T Consensus         4 ~~~~C~~~~~---~~~~~c~~~~l~-----~iP~~-------------------l~----~~l~~L~Ls~n~i~~~~~~~   52 (606)
T 3t6q_A            4 SDQKCIEKEV---NKTYNCENLGLN-----EIPGT-------------------LP----NSTECLEFSFNVLPTIQNTT   52 (606)
T ss_dssp             --CCCEEEET---TTEEECTTSCCS-----SCCTT-------------------SC----TTCCEEECTTCCCSEECTTT
T ss_pred             ccCceecccC---CceEECCCCCcc-----cCcCC-------------------CC----CcCcEEEccCCccCcCChhH
Confidence            3456777632   357899886665     34433                   21    25999999999999998888


Q ss_pred             ccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCC
Q psy16110        184 FSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLN  263 (719)
Q Consensus       184 f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~  263 (719)
                      |. .+++|++|+|++|.+.+.     .+.+|+++++|++|+|++|++..+.+..|+++++|++|++++|.++.+++..++
T Consensus        53 ~~-~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~  126 (606)
T 3t6q_A           53 FS-RLINLTFLDLTRCQIYWI-----HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH  126 (606)
T ss_dssp             ST-TCTTCSEEECTTCCCCEE-----CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred             hc-cCccceEEECCCCcccee-----ChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhc
Confidence            85 779999999999999873     446899999999999999999999888999999999999999999998777899


Q ss_pred             CCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCc--EEEcCCCCCCCcCCCccccccccC
Q psy16110        264 GPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIH--ILNLGYNRLNKLNSDTFQGGAFNG  341 (719)
Q Consensus       264 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~~~l~~  341 (719)
                      ++++|++|++++|.++.+....+..+++|++|++++|.++++.+..|+.+++|+  +|++++|.++.+++..|.      
T Consensus       127 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~------  200 (606)
T 3t6q_A          127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD------  200 (606)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT------
T ss_pred             cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh------
Confidence            999999999999999998766677799999999999999999999999999999  999999999998886443      


Q ss_pred             CCCCCEEeCCCCCCCccccccccCcccccccccccCCCcc--EEECCCC---CCcCcCC--cchh--ccCCEEEccCCcc
Q psy16110        342 LAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLK--SLDLNGN---FLINLES--TGLE--DTLDNLNVRDNQI  412 (719)
Q Consensus       342 l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~--~L~L~~n---~l~~~~~--~~~~--~~L~~L~l~~n~l  412 (719)
                      ..+|+.|++++|..              ++..+..+.+++  .+.+...   ....++.  ....  ..|+.|++++|.+
T Consensus       201 ~~~L~~L~l~~~~~--------------~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l  266 (606)
T 3t6q_A          201 SAVFQSLNFGGTQN--------------LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF  266 (606)
T ss_dssp             TCEEEEEECTTCSC--------------HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred             hccccccccCCchh--------------HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence            36899999998862              112222233332  3333221   1111111  1111  2688889999988


Q ss_pred             cccccCccC-CCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCC-CCCch
Q psy16110        413 TTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK-SIPQY  490 (719)
Q Consensus       413 ~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~-~~~~~  490 (719)
                      +++++..+. +++|+.|++++|.++.++. .+.++++|++|++++| .+..+++..+..+++|+.|++++|.+. .++..
T Consensus       267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  344 (606)
T 3t6q_A          267 FNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTG  344 (606)
T ss_dssp             SSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred             CccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence            888776554 8889999999998887754 5788899999999998 777776666888899999999999877 56666


Q ss_pred             hhcCCCCccEEEccCCcCCCCC--hhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCC
Q psy16110        491 QFDELLNLKYLCLAHNHLTEIP--EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKS  568 (719)
Q Consensus       491 ~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  568 (719)
                      .+..+++|++|++++|.++.+.  +..+..+++|++|++++|++.+..+..+..+++|++|++++|+++...+..    .
T Consensus       345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~  420 (606)
T 3t6q_A          345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS----P  420 (606)
T ss_dssp             TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC----T
T ss_pred             hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch----h
Confidence            7888999999999999988765  556788999999999999999988889999999999999999987654322    1


Q ss_pred             CCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCc---ChhhhcCCCCCCEEECCCCCCcccCcccCCCCC
Q psy16110        569 KPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYF---PKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP  645 (719)
Q Consensus       569 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  645 (719)
                      +..+++|++|++++|.+++..+..+..+++|++|++++|++++.   .+..+..+++|++|++++|+++++++..|.+++
T Consensus       421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  500 (606)
T 3t6q_A          421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK  500 (606)
T ss_dssp             TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc
Confidence            23469999999999999999899999999999999999999862   225688899999999999999999888999999


Q ss_pred             CCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCCccccC
Q psy16110        646 RLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHRCECA  717 (719)
Q Consensus       646 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~  717 (719)
                      +|++|++++|++++.++..|.++++| +|++++|+++.+++..|..+++| .+++++||+        .|+|+
T Consensus       501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~c~c~  564 (606)
T 3t6q_A          501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL--------DCTCS  564 (606)
T ss_dssp             TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE--------ECSGG
T ss_pred             CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc--------cccCC
Confidence            99999999999999999999999999 99999999999999999999999 999999999        88886

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.4e-56  Score=519.00  Aligned_cols=535  Identities=24%  Similarity=0.323  Sum_probs=440.2

Q ss_pred             cccccCCcCccccccCCCCcccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEEC
Q psy16110        146 QRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL  225 (719)
Q Consensus       146 ~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~L  225 (719)
                      ....+++.+|..+.    .++++|+|++|.++.++...|. .+++|++|+|++|.+.+.     .+.+|+++++|++|+|
T Consensus        11 cs~~~L~~ip~~~~----~~l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L   80 (680)
T 1ziw_A           11 CSHLKLTQVPDDLP----TNITVLNLTHNQLRRLPAANFT-RYSQLTSLDVGFNTISKL-----EPELCQKLPMLKVLNL   80 (680)
T ss_dssp             CCSSCCSSCCSCSC----TTCSEEECCSSCCCCCCGGGGG-GGTTCSEEECCSSCCCCC-----CTTHHHHCTTCCEEEC
T ss_pred             CCCCCccccccccC----CCCcEEECCCCCCCCcCHHHHh-CCCcCcEEECCCCccCcc-----CHHHHhcccCcCEEEC
Confidence            34556788997654    3699999999999999998885 679999999999999874     3468999999999999


Q ss_pred             cCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCccc
Q psy16110        226 SDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI  305 (719)
Q Consensus       226 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~  305 (719)
                      ++|+++.+++..|+++++|++|++++|.++.+++.+++++++|++|++++|.++...+..+..+++|++|++++|.++++
T Consensus        81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A           81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             CCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence            99999999998899999999999999999999988899999999999999999999888999999999999999999998


Q ss_pred             Cccccc--CcccCcEEEcCCCCCCCcCCCcccccc-c---------------------cCCCCCCEEeCCCCCCCccccc
Q psy16110        306 EGGAFN--GLAKIHILNLGYNRLNKLNSDTFQGGA-F---------------------NGLAKIHILNLGYNRLNKLNSD  361 (719)
Q Consensus       306 ~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~-l---------------------~~l~~L~~L~L~~n~l~~i~~~  361 (719)
                      .+..+.  .+++|++|++++|.++++.+..+.... +                     ...++|+.|++++|.++.+.. 
T Consensus       161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~-  239 (680)
T 1ziw_A          161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN-  239 (680)
T ss_dssp             CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT-
T ss_pred             CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh-
Confidence            877664  568999999999999988776443110 0                     011455666666665544333 


Q ss_pred             cccCcccccccccccCC--CccEEECCCCCCcCcCC--cchhccCCEEEccCCcccccccCcc-CCCCccEEEccCCCCC
Q psy16110        362 TFQGTHITIFSFFQDFQ--KLKSLDLNGNFLINLES--TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLK  436 (719)
Q Consensus       362 ~f~~~~~~~~~~l~~~~--~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~  436 (719)
                                ..+..++  +|++|++++|.++.+++  +..+++|++|++++|.+.++.+..+ .+++|+.|++++|...
T Consensus       240 ----------~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~  309 (680)
T 1ziw_A          240 ----------TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK  309 (680)
T ss_dssp             ----------TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred             ----------hHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence                      2333343  48888888888877654  4556788888888888887765444 4788888888876433


Q ss_pred             ---------CcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCC--CCCCchhhcCC--CCccEEEc
Q psy16110        437 ---------ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL--KSIPQYQFDEL--LNLKYLCL  503 (719)
Q Consensus       437 ---------~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l--~~~~~~~~~~~--~~L~~L~L  503 (719)
                               .+....|..+++|++|++++| .+..++...|..+++|++|++++|.+  ..++...|..+  ++|+.|++
T Consensus       310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L  388 (680)
T 1ziw_A          310 QSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL  388 (680)
T ss_dssp             C------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred             cccccccccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence                     222335777888888888888 67777777788888888888888853  34444444433  57888888


Q ss_pred             cCCcCCCCChhhhcCCCCCCEEeCCCCcccccc-CCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcC
Q psy16110        504 AHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR-VGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN  582 (719)
Q Consensus       504 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~  582 (719)
                      ++|+++.+.+.+|..+++|++|++++|++++.. +..+.++++|++|++++|+++.+....|.     .+++|++|++++
T Consensus       389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~~~~L~~L~l~~  463 (680)
T 1ziw_A          389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-----LVPSLQRLMLRR  463 (680)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-----TCTTCCEEECTT
T ss_pred             CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-----cCcccccchhcc
Confidence            889888888888889999999999999998644 46788999999999999998877766664     459999999999


Q ss_pred             CCCC--CcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcc--------cCCCCCCCCEEeC
Q psy16110        583 NELT--YLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDY--------DYGYLPRLRKLNL  652 (719)
Q Consensus       583 n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--------~l~~l~~L~~L~L  652 (719)
                      |.+.  +..|..|..+++|++|++++|+++.+++.++.++++|++|++++|+++++...        .+.++++|++|++
T Consensus       464 n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L  543 (680)
T 1ziw_A          464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL  543 (680)
T ss_dssp             SCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred             ccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence            9987  55788899999999999999999999999999999999999999999986432        3788999999999


Q ss_pred             CCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeee
Q psy16110        653 NNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQS  707 (719)
Q Consensus       653 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~  707 (719)
                      ++|+++.+++..|..+++|+.|++++|+++.+|+..|.++++| .|++++|++...
T Consensus       544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~  599 (680)
T 1ziw_A          544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV  599 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred             CCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence            9999999998889999999999999999999999999999999 999999998664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.5e-58  Score=537.33  Aligned_cols=536  Identities=22%  Similarity=0.184  Sum_probs=419.6

Q ss_pred             cccCCcCccccccCCCCcccEEEcCCCCcc-ccCcc-cccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEEC
Q psy16110        148 WVGHQILPMQIFSSSDIPIRRLDFSGNALR-RLSDK-LFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDL  225 (719)
Q Consensus       148 ~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~-~l~~~-~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~L  225 (719)
                      ..++..+|..+...  .+|++|||++|.++ .+|.. .+ +.+++|++|+|++|.+.+.+|.    ..+.++++|++|+|
T Consensus        86 ~~~~~~l~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~----~~~~~l~~L~~L~L  158 (768)
T 3rgz_A           86 NSHINGSVSGFKCS--ASLTSLDLSRNSLSGPVTTLTSL-GSCSGLKFLNVSSNTLDFPGKV----SGGLKLNSLEVLDL  158 (768)
T ss_dssp             TSCEEECCCCCCCC--TTCCEEECCSSEEEEEGGGGGGG-GGCTTCCEEECCSSEEECCSSC----CSCCCCTTCSEEEC
T ss_pred             CCCcCCCchhhccC--CCCCEEECCCCcCCCcCCChHHH-hCCCCCCEEECcCCccCCcCCH----HHhccCCCCCEEEC
Confidence            33444444444333  47999999999988 45551 33 5788999999999998876553    23478899999999


Q ss_pred             cCCCCcccCcCc---cCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCC
Q psy16110        226 SDNQIKAIEEGI---LKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRL  302 (719)
Q Consensus       226 s~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i  302 (719)
                      ++|+++...+..   +.++++|++|++++|.++...+  +..+++|++|++++|.++...+. ++.+++|++|++++|.+
T Consensus       159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l  235 (768)
T 3rgz_A          159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL  235 (768)
T ss_dssp             CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred             CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC
Confidence            999998877655   7888999999999998886654  47889999999999998887666 88899999999999999


Q ss_pred             cccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCC-ccccccccC-------------ccc
Q psy16110        303 TTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN-KLNSDTFQG-------------THI  368 (719)
Q Consensus       303 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~-~i~~~~f~~-------------~~~  368 (719)
                      ++..+.+|..+++|++|++++|.+++..+.       ..+++|++|++++|+++ .++...+..             +.+
T Consensus       236 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-------~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~  308 (768)
T 3rgz_A          236 SGDFSRAISTCTELKLLNISSNQFVGPIPP-------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG  308 (768)
T ss_dssp             CSCHHHHTTTCSSCCEEECCSSCCEESCCC-------CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE
T ss_pred             CCcccHHHhcCCCCCEEECCCCcccCccCc-------cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC
Confidence            888888889999999999999988754432       15677777888777765 333322211             123


Q ss_pred             ccccccccCCCccEEECCCCCCc-CcCC--cchhccCCEEEccCCcccc-cccCccCCC-CccEEEccCCCCCCcCcccc
Q psy16110        369 TIFSFFQDFQKLKSLDLNGNFLI-NLES--TGLEDTLDNLNVRDNQITT-LSSSALNYK-LLTKLDLSHNNLKELEPTAF  443 (719)
Q Consensus       369 ~~~~~l~~~~~L~~L~L~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~-~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~  443 (719)
                      .+|..+..+++|++|++++|.++ .++.  +..+++|++|++++|.+++ ++.....++ +|+.|++++|.+.+..+..+
T Consensus       309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~  388 (768)
T 3rgz_A          309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL  388 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred             ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence            45667778888888888888776 4443  4556778888888888774 343333454 78888888888776555555


Q ss_pred             cC--CCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCC
Q psy16110        444 TN--VPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN  521 (719)
Q Consensus       444 ~~--l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  521 (719)
                      ..  +++|++|++++| .+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus       389 ~~~~~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  467 (768)
T 3rgz_A          389 CQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT  467 (768)
T ss_dssp             TCSTTCCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             hhcccCCccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence            54  678888888888 444333345778889999999999888777778888999999999999888666667888899


Q ss_pred             CCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccE
Q psy16110        522 LTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKT  601 (719)
Q Consensus       522 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  601 (719)
                      |++|++++|++++..|..+..+++|++|++++|++++..+..+..     +++|++|++++|++++.+|..+..+++|++
T Consensus       468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  542 (768)
T 3rgz_A          468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-----LENLAILKLSNNSFSGNIPAELGDCRSLIW  542 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-----CTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred             ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc-----CCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence            999999999998888888889999999999999988665555543     588999999999999888888999999999


Q ss_pred             EEcCCCCCCC-cChhh----------------------------------------------------------------
Q psy16110        602 LKLAFNKFNY-FPKEL----------------------------------------------------------------  616 (719)
Q Consensus       602 L~L~~n~l~~-~~~~~----------------------------------------------------------------  616 (719)
                      |++++|++++ +|...                                                                
T Consensus       543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g  622 (768)
T 3rgz_A          543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG  622 (768)
T ss_dssp             EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred             EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence            9999998773 44322                                                                


Q ss_pred             -----hcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcC
Q psy16110        617 -----ILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNT  691 (719)
Q Consensus       617 -----l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~  691 (719)
                           +..+++|+.||+++|++++..+..++++++|+.|+|++|++++.+|..|.++++|++|||++|+++...+..|.+
T Consensus       623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~  702 (768)
T 3rgz_A          623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA  702 (768)
T ss_dssp             ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence                 334578999999999999888888999999999999999999998888999999999999999999655567899


Q ss_pred             cccc-EEecCCCceee
Q psy16110        692 FLYT-NYDMAPNLVFQ  706 (719)
Q Consensus       692 l~~L-~L~l~~N~l~~  706 (719)
                      ++.| +|++++|+++.
T Consensus       703 l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          703 LTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             CCCCSEEECCSSEEEE
T ss_pred             CCCCCEEECcCCcccc
Confidence            9999 99999999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.1e-56  Score=507.32  Aligned_cols=508  Identities=24%  Similarity=0.265  Sum_probs=437.9

Q ss_pred             cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110        165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL  244 (719)
Q Consensus       165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  244 (719)
                      ++++|+|++|.++.++...|. .+++|++|+|++|.+.+     +.+.+|.++++|++|+|++|+++.+.+..|+++++|
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~-----i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  106 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFS-NFSELQWLDLSRCEIET-----IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL  106 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred             CcCEEECCCCCcCEeChhhcc-CCccCcEEeCCCCcccc-----cCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence            599999999999999998885 67999999999999987     334689999999999999999999988899999999


Q ss_pred             cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccC-CCcccCCCccCEEEccCCCCcccCcccccCcccCc----EE
Q psy16110        245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK-ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIH----IL  319 (719)
Q Consensus       245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~----~L  319 (719)
                      ++|++++|.++.+++..++++++|++|++++|.++.+. |..|+++++|++|++++|.++++.+..|+.+++|+    +|
T Consensus       107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L  186 (606)
T 3vq2_A          107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL  186 (606)
T ss_dssp             CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred             CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence            99999999999999878999999999999999998754 78899999999999999999999998898888776    89


Q ss_pred             EcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCC----
Q psy16110        320 NLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES----  395 (719)
Q Consensus       320 ~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~----  395 (719)
                      ++++|.++.++...+.     . .+|+.|++++|.++.          ...+..+..+++|+.+++..+.+.....    
T Consensus       187 ~l~~n~l~~~~~~~~~-----~-~~L~~L~L~~n~~~~----------~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~  250 (606)
T 3vq2_A          187 DMSLNPIDFIQDQAFQ-----G-IKLHELTLRGNFNSS----------NIMKTCLQNLAGLHVHRLILGEFKDERNLEIF  250 (606)
T ss_dssp             ECTTCCCCEECTTTTT-----T-CEEEEEEEESCCSCH----------HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred             eccCCCcceeCccccc-----C-ceeeeeeccCCccch----------hHHHHHhccccccccccccccccccCCccccc
Confidence            9999999998876432     3 389999999998742          2345667788889888876544332211    


Q ss_pred             -cchh-----ccCCEEEc-cCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCC
Q psy16110        396 -TGLE-----DTLDNLNV-RDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGF  468 (719)
Q Consensus       396 -~~~~-----~~L~~L~l-~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~  468 (719)
                       ....     -.++.+++ ..+.+.+..+....+++|+.|++++|.+..++  .+..+++|++|++++| .++.+|.  +
T Consensus       251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n-~l~~lp~--~  325 (606)
T 3vq2_A          251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRC-QLKQFPT--L  325 (606)
T ss_dssp             CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESC-CCSSCCC--C
T ss_pred             ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccc-cCccccc--C
Confidence             0111     14666777 56677776666556899999999999998886  6889999999999999 6688883  4


Q ss_pred             CCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCC--hhhhcCCCCCCEEeCCCCccccccCCccCCCCCC
Q psy16110        469 DPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIP--EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSM  546 (719)
Q Consensus       469 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L  546 (719)
                       .+++|+.|++++|......  .+..+++|++|++++|.++.+.  +..+..+++|++|++++|.++++ +..+..+++|
T Consensus       326 -~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L  401 (606)
T 3vq2_A          326 -DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEEL  401 (606)
T ss_dssp             -CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTC
T ss_pred             -CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCC
Confidence             8999999999999544322  5678999999999999998763  45688999999999999999886 4789999999


Q ss_pred             CEEEccCCcCCcccC-CcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCC-cChhhhcCCCCCC
Q psy16110        547 KRLDLSFNKLTTFKG-DYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNY-FPKELILGLSYLQ  624 (719)
Q Consensus       547 ~~L~L~~n~l~~~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~  624 (719)
                      ++|++++|++.+..+ ..+     ..+++|++|++++|.+++..|..+..+++|++|++++|++++ +.+..+..+++|+
T Consensus       402 ~~L~l~~n~l~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  476 (606)
T 3vq2_A          402 QHLDFQHSTLKRVTEFSAF-----LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT  476 (606)
T ss_dssp             CEEECTTSEEESTTTTTTT-----TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CeeECCCCccCCccChhhh-----hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence            999999999987755 344     346999999999999999999999999999999999999987 4556689999999


Q ss_pred             EEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcc-cc-EEecCCC
Q psy16110        625 EIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL-YT-NYDMAPN  702 (719)
Q Consensus       625 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L-~L~l~~N  702 (719)
                      +|++++|+++++++..+.++++|++|++++|+++++++..|..+++|++|+|++|+++.+|.. |..++ +| ++++++|
T Consensus       477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSC
T ss_pred             EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCC
Confidence            999999999999988999999999999999999999888999999999999999999999987 77886 59 9999999


Q ss_pred             ceeeeccCCCccccC
Q psy16110        703 LVFQSHLSGHRCECA  717 (719)
Q Consensus       703 ~l~~~~~~~~~C~c~  717 (719)
                      |+        .|+|+
T Consensus       556 ~~--------~c~c~  562 (606)
T 3vq2_A          556 SV--------ACICE  562 (606)
T ss_dssp             CC--------CCSST
T ss_pred             Cc--------ccCCc
Confidence            99        78886

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.5e-54  Score=506.69  Aligned_cols=525  Identities=21%  Similarity=0.186  Sum_probs=419.3

Q ss_pred             CcccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCc-cCCCc
Q psy16110        164 IPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGI-LKGCD  242 (719)
Q Consensus       164 ~~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~  242 (719)
                      ..|+.++++.+.+..+|..+  +.+++|++|+|++|.+.+.+|.   ...++++++|++|+|++|.+....+.. +.+++
T Consensus        77 ~~L~~l~~~~~~~~~l~~~~--~~l~~L~~L~Ls~n~l~~~~~~---~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~  151 (768)
T 3rgz_A           77 TGLESLFLSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTT---LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN  151 (768)
T ss_dssp             TTCCEEECTTSCEEECCCCC--CCCTTCCEEECCSSEEEEEGGG---GGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred             CcccccCCcCCCcCCCchhh--ccCCCCCEEECCCCcCCCcCCC---hHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence            36999999999887777665  4689999999999999886653   237899999999999999988655443 48899


Q ss_pred             cCcEEECCCCcCCcCCCCC---CCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEE
Q psy16110        243 NLLELRMDHNRFTSIPSVS---LNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHIL  319 (719)
Q Consensus       243 ~L~~L~L~~n~l~~i~~~~---l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  319 (719)
                      +|++|++++|.++..++..   +.++++|++|++++|.+++..+  +..+++|++|++++|.+++..+. ++++++|++|
T Consensus       152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L  228 (768)
T 3rgz_A          152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL  228 (768)
T ss_dssp             TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEE
T ss_pred             CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEE
Confidence            9999999999999776655   7899999999999999987654  48899999999999999987776 9999999999


Q ss_pred             EcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccc-cccccC----------cccccccccccC-CCccEEECCC
Q psy16110        320 NLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLN-SDTFQG----------THITIFSFFQDF-QKLKSLDLNG  387 (719)
Q Consensus       320 ~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~-~~~f~~----------~~~~~~~~l~~~-~~L~~L~L~~  387 (719)
                      ++++|.+++..+.     .+..+++|++|++++|.++... ...+..          +.+.+|..+... ++|++|++++
T Consensus       229 ~Ls~n~l~~~~~~-----~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~  303 (768)
T 3rgz_A          229 DISGNKLSGDFSR-----AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG  303 (768)
T ss_dssp             ECCSSCCCSCHHH-----HTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS
T ss_pred             ECcCCcCCCcccH-----HHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC
Confidence            9999999865544     5778999999999999886422 111111          122345544443 6777777777


Q ss_pred             CCCcCcCC--cchhccCCEEEccCCccc-ccccC-ccCCCCccEEEccCCCCCCcCcccccCCC-cCcEEeCcCCCCCCC
Q psy16110        388 NFLINLES--TGLEDTLDNLNVRDNQIT-TLSSS-ALNYKLLTKLDLSHNNLKELEPTAFTNVP-TLLHLNLSRNAHLSS  462 (719)
Q Consensus       388 n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~~l~~  462 (719)
                      |.+++..+  ++.+++|++|++++|.+. .++.. ...+++|++|++++|.+.+..+..+..++ +|++|++++|...+.
T Consensus       304 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~  383 (768)
T 3rgz_A          304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP  383 (768)
T ss_dssp             SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred             CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC
Confidence            76664332  445566777777777766 34433 33467777777777777655555566665 777777777744444


Q ss_pred             CCCCCCC-CCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccC
Q psy16110        463 LPVGGFD-PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLY  541 (719)
Q Consensus       463 l~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~  541 (719)
                      ++..... .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..|..+.
T Consensus       384 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  463 (768)
T 3rgz_A          384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM  463 (768)
T ss_dssp             CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             cChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence            4433211 267899999999988877777888999999999999999877667788999999999999999988898999


Q ss_pred             CCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCC
Q psy16110        542 GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLS  621 (719)
Q Consensus       542 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  621 (719)
                      .+++|++|++++|++++..+..+.     .+++|++|++++|++++.+|..++.+++|++|++++|++++..+..+..++
T Consensus       464 ~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  538 (768)
T 3rgz_A          464 YVKTLETLILDFNDLTGEIPSGLS-----NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR  538 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGG-----GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred             CCCCceEEEecCCcccCcCCHHHh-----cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence            999999999999999866555554     459999999999999999999999999999999999999976667789999


Q ss_pred             CCCEEECCCCCCcccCcc--------------------------------------------------------------
Q psy16110        622 YLQEIDLSNNQLKTIDDY--------------------------------------------------------------  639 (719)
Q Consensus       622 ~L~~L~Ls~n~l~~~~~~--------------------------------------------------------------  639 (719)
                      +|+.|++++|++++..|.                                                              
T Consensus       539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  618 (768)
T 3rgz_A          539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR  618 (768)
T ss_dssp             TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred             CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence            999999999988743221                                                              


Q ss_pred             --------cCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceee
Q psy16110        640 --------DYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQ  706 (719)
Q Consensus       640 --------~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~  706 (719)
                              .+..+++|++|++++|++++.+|..|.++++|+.|+|++|+++...+..|.+++.| .|||++|++..
T Consensus       619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g  694 (768)
T 3rgz_A          619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG  694 (768)
T ss_dssp             EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence                    24456789999999999999999899999999999999999996555678999999 99999999964

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.3e-52  Score=479.09  Aligned_cols=515  Identities=24%  Similarity=0.304  Sum_probs=436.4

Q ss_pred             hhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCE
Q psy16110        143 TFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI  222 (719)
Q Consensus       143 ~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~  222 (719)
                      .+.+..+.++.+++..|... .+|++|+|++|.++.++...|. .+++|++|+|++|.+.+..     +.+|+++++|++
T Consensus        37 ~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~  109 (606)
T 3t6q_A           37 CLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIYWIHEDTFQ-SQHRLDTLVLTANPLIFMA-----ETALSGPKALKH  109 (606)
T ss_dssp             EEECTTCCCSEECTTTSTTC-TTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCSEEC-----TTTTSSCTTCCE
T ss_pred             EEEccCCccCcCChhHhccC-ccceEEECCCCccceeChhhcc-CccccCeeeCCCCcccccC-----hhhhcccccccE
Confidence            34445556667766666665 5799999999999999888885 6799999999999998743     457899999999


Q ss_pred             EECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccC--EEEccCC
Q psy16110        223 LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLE--RIILRGN  300 (719)
Q Consensus       223 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~--~L~Ls~n  300 (719)
                      |++++|+++.+.+..|+++++|++|++++|.++.++...+..+++|++|++++|.++.+.+..|..+++|+  .|++++|
T Consensus       110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred             eeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence            99999999999888899999999999999999987644567799999999999999999888899999999  9999999


Q ss_pred             CCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCc
Q psy16110        301 RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKL  380 (719)
Q Consensus       301 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L  380 (719)
                      .++++.+..|.. .+|++|++++|..  ++.      .+..+.+++...+....+.......+   .......+.. .+|
T Consensus       190 ~l~~~~~~~~~~-~~L~~L~l~~~~~--~~~------~~~~l~~~~l~~l~~~~~~~~~~~~i---~~~~~~~l~~-~~L  256 (606)
T 3t6q_A          190 DIAGIEPGAFDS-AVFQSLNFGGTQN--LLV------IFKGLKNSTIQSLWLGTFEDMDDEDI---SPAVFEGLCE-MSV  256 (606)
T ss_dssp             CCCEECTTTTTT-CEEEEEECTTCSC--HHH------HHHHTTTCEEEEEECCCCTTSCCCCC---CGGGGGGGGG-SEE
T ss_pred             ccCccChhHhhh-ccccccccCCchh--HHH------Hhhhccccchhheechhhcccccccc---ChhHhchhhc-Cce
Confidence            999999887765 6899999999862  211      23444444443333332222211111   1111111222 279


Q ss_pred             cEEECCCCCCcCcCC--cchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCC
Q psy16110        381 KSLDLNGNFLINLES--TGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA  458 (719)
Q Consensus       381 ~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  458 (719)
                      +.|++++|.++.+++  +..+++|++|++++|.++.++.....+++|++|++++|.+.++.+..+..+++|++|++++|.
T Consensus       257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  336 (606)
T 3t6q_A          257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT  336 (606)
T ss_dssp             EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred             eEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence            999999999998876  566789999999999999998887789999999999999999988899999999999999996


Q ss_pred             CCCCCCCCCCCCCCCccEEEcCCCCCCCCC--chhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccccc
Q psy16110        459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIP--QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR  536 (719)
Q Consensus       459 ~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~  536 (719)
                      ..+.++...+..+++|++|++++|.+..+.  +..+..+++|++|++++|.+..+++..|..+++|++|++++|++.+..
T Consensus       337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  416 (606)
T 3t6q_A          337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD  416 (606)
T ss_dssp             SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred             cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc
Confidence            666888888999999999999999999876  567889999999999999999988888999999999999999998875


Q ss_pred             C-CccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCc---CcCcccCCCCccEEEcCCCCCCCc
Q psy16110        537 V-GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYL---FPSSFTIHSKLKTLKLAFNKFNYF  612 (719)
Q Consensus       537 ~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~  612 (719)
                      + ..+..+++|++|++++|.++...+..+.     .+++|++|++++|.+++.   .+..+..+++|++|++++|+++++
T Consensus       417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  491 (606)
T 3t6q_A          417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFD-----GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI  491 (606)
T ss_dssp             TCCTTTTCTTCCEEECTTCCCBTTCTTTTT-----TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred             cchhhhCcccCCEEECCCCccCCcCHHHHh-----CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence            5 4589999999999999999887766654     459999999999999873   236688999999999999999999


Q ss_pred             ChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110        613 PKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK  683 (719)
Q Consensus       613 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  683 (719)
                      ++..+.++++|++|++++|++++..+..+.+++.| +|++++|+++++++..|..+++|++|++++|++.+
T Consensus       492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence            88889999999999999999999998899999999 99999999999999888889999999999999985

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.9e-53  Score=498.23  Aligned_cols=509  Identities=25%  Similarity=0.297  Sum_probs=427.0

Q ss_pred             cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110        165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL  244 (719)
Q Consensus       165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  244 (719)
                      ++++|||++|.|+.++...|. .+++|++|+|++|...+.+    .+++|.++++|++|+|++|.+..+.++.|.++++|
T Consensus        25 ~l~~LdLs~N~i~~i~~~~~~-~l~~L~~LdLs~n~~~~~i----~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L   99 (844)
T 3j0a_A           25 TTERLLLSFNYIRTVTASSFP-FLEQLQLLELGSQYTPLTI----DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL   99 (844)
T ss_dssp             TCCEEEEESCCCCEECSSSCS-SCCSCSEEEECTTCCCCEE----CTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred             CcCEEECCCCcCCccChhHCc-ccccCeEEeCCCCCCcccc----CHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence            699999999999999888885 7799999999999765543    34689999999999999999999999999999999


Q ss_pred             cEEECCCCcCCc-CC-CCCCCCCCCCcEEEcCCCcCcccCC-CcccCCCccCEEEccCCCCcccCcccccCc--ccCcEE
Q psy16110        245 LELRMDHNRFTS-IP-SVSLNGPRALRILSMAYNRIGTLKA-DSFLSQRWLERIILRGNRLTTIEGGAFNGL--AKIHIL  319 (719)
Q Consensus       245 ~~L~L~~n~l~~-i~-~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L  319 (719)
                      ++|+|++|.+++ ++ ...++++++|++|++++|.++++.+ ..|+++++|++|++++|.++++.+..+..+  ++|+.|
T Consensus       100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L  179 (844)
T 3j0a_A          100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF  179 (844)
T ss_dssp             CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred             CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence            999999999986 33 3358999999999999999998865 578999999999999999999988888887  899999


Q ss_pred             EcCCCCCCCcCCCccccccccCCC------CCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCC---
Q psy16110        320 NLGYNRLNKLNSDTFQGGAFNGLA------KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL---  390 (719)
Q Consensus       320 ~L~~n~l~~~~~~~~~~~~l~~l~------~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l---  390 (719)
                      +++.|.+....+..     +..+.      .|+.|++++|.++......+..       . ....+++.+.++.+..   
T Consensus       180 ~L~~n~l~~~~~~~-----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-------~-l~~~~l~~L~l~~~~~~~~  246 (844)
T 3j0a_A          180 SLAANSLYSRVSVD-----WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN-------A-ISKSQAFSLILAHHIMGAG  246 (844)
T ss_dssp             EECCSBSCCCCCCC-----CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG-------T-SCSCCBSEEECCSSCCBCS
T ss_pred             ECCCCccccccccc-----hhhcCCccccCceeEEecCCCcCchhHHHHHHh-------h-cCcccccceeccccccccc
Confidence            99999998755543     22333      4999999999875433222211       1 1235678888774322   


Q ss_pred             ------cCcCC--c-c-hhccCCEEEccCCcccccccCccC-CCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCC
Q psy16110        391 ------INLES--T-G-LEDTLDNLNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAH  459 (719)
Q Consensus       391 ------~~~~~--~-~-~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~  459 (719)
                            .....  + + ..++|+.|++++|.+.++.+..+. +++|+.|++++|.+.++.+..|.++++|++|++++| .
T Consensus       247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~  325 (844)
T 3j0a_A          247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-L  325 (844)
T ss_dssp             SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC-C
T ss_pred             ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC-C
Confidence                  22211  1 1 136899999999999988766655 899999999999999998889999999999999999 7


Q ss_pred             CCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCc
Q psy16110        460 LSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS  539 (719)
Q Consensus       460 l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~  539 (719)
                      ++.+++..|..+++|+.|++++|.+..+++..|..+++|++|++++|.++.++.     +++|+.|++++|+++.+..  
T Consensus       326 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~L~~L~l~~N~l~~l~~--  398 (844)
T 3j0a_A          326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLPK--  398 (844)
T ss_dssp             CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-----CCSCSEEEEESCCCCCCCC--
T ss_pred             CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC-----CCCcchhccCCCCcccccc--
Confidence            888877889999999999999999999998889999999999999999987754     7899999999999986632  


Q ss_pred             cCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcC-cccCCCCccEEEcCCCCCCC-----cC
Q psy16110        540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPS-SFTIHSKLKTLKLAFNKFNY-----FP  613 (719)
Q Consensus       540 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~-----~~  613 (719)
                        ...+++.|++++|+++.++...+.    ..+++|++|++++|++++..+. .+..+++|++|++++|.++.     ..
T Consensus       399 --~~~~l~~L~ls~N~l~~l~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~  472 (844)
T 3j0a_A          399 --INLTANLIHLSENRLENLDILYFL----LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC  472 (844)
T ss_dssp             --CCTTCCEEECCSCCCCSSTTHHHH----TTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred             --cccccceeecccCccccCchhhhh----hcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence              256899999999999876543221    2468999999999999976443 46678999999999999974     34


Q ss_pred             hhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcc
Q psy16110        614 KELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL  693 (719)
Q Consensus       614 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~  693 (719)
                      +..|.++++|++|+|++|+++++++..|.++++|+.|+|++|+++++++..+.  ++|+.|||++|+++.+++..|   .
T Consensus       473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~  547 (844)
T 3j0a_A          473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---V  547 (844)
T ss_dssp             SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---S
T ss_pred             hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---C
Confidence            45688899999999999999999998999999999999999999999988776  899999999999999888665   4


Q ss_pred             cc-EEecCCCceeeeccCCCccccCC
Q psy16110        694 YT-NYDMAPNLVFQSHLSGHRCECAQ  718 (719)
Q Consensus       694 ~L-~L~l~~N~l~~~~~~~~~C~c~~  718 (719)
                      +| .+++++||+        .|+|+-
T Consensus       548 ~L~~l~l~~Np~--------~C~c~~  565 (844)
T 3j0a_A          548 SLSVLDITHNKF--------ICECEL  565 (844)
T ss_dssp             SCCEEEEEEECC--------CCSSSC
T ss_pred             CcCEEEecCCCc--------cccccc
Confidence            79 999999999        898863

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-51  Score=466.41  Aligned_cols=491  Identities=22%  Similarity=0.279  Sum_probs=311.8

Q ss_pred             cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110        165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL  244 (719)
Q Consensus       165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  244 (719)
                      ++++|++++|.++.++...|. .+++|++|+|++|.+.+     +.+.+|+++++|++|+|++|+++.+++..|.++++|
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQT-----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTT-TCSSCCEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             cccEEEccCCccCccChhHhh-CCCCceEEECCCCcCCc-----cCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence            599999999999999988885 67999999999999886     344679999999999999999999998899999999


Q ss_pred             cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccC-CCcccCCCccCEEEccCCCCcccCcccccCcccC----cEE
Q psy16110        245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK-ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKI----HIL  319 (719)
Q Consensus       245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L----~~L  319 (719)
                      ++|++++|.++.++...++++++|++|++++|.++.+. |..|.++++|++|++++|.++++.+..++.+++|    ++|
T Consensus       103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L  182 (570)
T 2z63_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (570)
T ss_dssp             CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred             ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence            99999999999999878999999999999999998854 7889999999999999999999998889999998    899


Q ss_pred             EcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchh
Q psy16110        320 NLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE  399 (719)
Q Consensus       320 ~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~  399 (719)
                      ++++|.++.+++..|.     .. +|+.|++++|....          ..++..+..+++++.+.+....+.....    
T Consensus       183 ~l~~n~l~~~~~~~~~-----~~-~L~~L~l~~n~~~~----------~~~~~~~~~l~~l~~~~l~~~~~~~~~~----  242 (570)
T 2z63_A          183 DLSLNPMNFIQPGAFK-----EI-RLHKLTLRNNFDSL----------NVMKTCIQGLAGLEVHRLVLGEFRNEGN----  242 (570)
T ss_dssp             ECTTCCCCEECTTTTT-----TC-EEEEEEEESCCSCT----------THHHHHHHTTTTCEEEEEEEEECCCCSS----
T ss_pred             ccCCCCceecCHHHhc-----cC-cceeEecccccccc----------cchhhhhcCccccceeeeccccccCchh----
Confidence            9999999998876443     33 79999999874321          1234445566666665554322211110    


Q ss_pred             ccCCEEEccCCcccccccCccCCCCccEEEccCC-CCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEE
Q psy16110        400 DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHN-NLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLD  478 (719)
Q Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~  478 (719)
                        ++  .+....+.+..     --.++.++++++ .+.+..+..+..+++|+.|++++| .+..+|.. +..+ +|+.|+
T Consensus       243 --l~--~~~~~~~~~l~-----~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~~-~~~~-~L~~L~  310 (570)
T 2z63_A          243 --LE--KFDKSALEGLC-----NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDF-SYNF-GWQHLE  310 (570)
T ss_dssp             --CE--ECCTTTTGGGG-----GSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC-EECSCCBC-CSCC-CCSEEE
T ss_pred             --hh--hcchhhhcccc-----ccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc-cchhhhhh-hccC-CccEEe
Confidence              00  00000010000     011333444443 333333444444555555555555 34444433 2333 555555


Q ss_pred             cCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccccc--CCccCCCCCCCEEEccCCcC
Q psy16110        479 LAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR--VGSLYGLPSMKRLDLSFNKL  556 (719)
Q Consensus       479 ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~l~~l~~L~~L~L~~n~l  556 (719)
                      +++|.+..++.   ..+++|++|++++|.+......  ..+++|++|++++|++++..  +..+..+++|++|++++|.+
T Consensus       311 l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l  385 (570)
T 2z63_A          311 LVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV  385 (570)
T ss_dssp             EESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE
T ss_pred             eccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc
Confidence            55555554443   2344555555555544433221  34455555555555555432  33444555555555555555


Q ss_pred             CcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCc-CcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCc-
Q psy16110        557 TTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFP-SSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLK-  634 (719)
Q Consensus       557 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-  634 (719)
                      +.++.. +.     .+++|++|++++|.+.+..+ ..+..+++|++|++++|++....+..+.++++|++|++++|.++ 
T Consensus       386 ~~~~~~-~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  459 (570)
T 2z63_A          386 ITMSSN-FL-----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  459 (570)
T ss_dssp             EEEEEE-EE-----TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred             cccccc-cc-----ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc
Confidence            544433 21     23555555555555555433 34555555666666665555555555555566666666666554 


Q ss_pred             ccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCce
Q psy16110        635 TIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLV  704 (719)
Q Consensus       635 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l  704 (719)
                      +..+..+..+++|++|++++|+++++.+..|..+++|++|++++|+++.+++..|.++++| .+++++|++
T Consensus       460 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence            2233355556666666666666665555555555666666666666665555555556666 666666665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1e-50  Score=463.56  Aligned_cols=505  Identities=22%  Similarity=0.265  Sum_probs=427.7

Q ss_pred             ccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCc
Q psy16110        166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLL  245 (719)
Q Consensus       166 L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  245 (719)
                      -++++.+++.++.+|..+    .+++++|+|++|.+.+.     .+.+|.++++|++|+|++|+++.+++.+|.++++|+
T Consensus        13 ~~~~~c~~~~l~~ip~~~----~~~l~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~   83 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDI----PSSTKNIDLSFNPLKIL-----KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS   83 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS----CTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CCceEccCCCcccCCCCC----CCCcCEEECCCCCcCEe-----ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence            467999999999999865    37999999999999873     345899999999999999999999998999999999


Q ss_pred             EEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccC-cccccCcccCcEEEcCCC
Q psy16110        246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIE-GGAFNGLAKIHILNLGYN  324 (719)
Q Consensus       246 ~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n  324 (719)
                      +|++++|.++.+++.+|+++++|++|++++|.++.+++..++++++|++|++++|.++++. |..|+++++|++|++++|
T Consensus        84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A           84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            9999999999997778999999999999999999999888999999999999999998754 788999999999999999


Q ss_pred             CCCCcCCCccccccccCCCC-CCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCc--CC-cchhc
Q psy16110        325 RLNKLNSDTFQGGAFNGLAK-IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL--ES-TGLED  400 (719)
Q Consensus       325 ~l~~~~~~~~~~~~l~~l~~-L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~--~~-~~~~~  400 (719)
                      .++.+++..+.  .+..++. +++|++++|.++.++...|.            ..+|+.|++++|.+...  +. ...++
T Consensus       164 ~l~~~~~~~~~--~l~~L~~~l~~L~l~~n~l~~~~~~~~~------------~~~L~~L~L~~n~~~~~~~~~~~~~l~  229 (606)
T 3vq2_A          164 YIQTITVNDLQ--FLRENPQVNLSLDMSLNPIDFIQDQAFQ------------GIKLHELTLRGNFNSSNIMKTCLQNLA  229 (606)
T ss_dssp             CCCEECTTTTH--HHHHCTTCCCEEECTTCCCCEECTTTTT------------TCEEEEEEEESCCSCHHHHHHHHHTTT
T ss_pred             cceecChhhhh--hhhccccccceeeccCCCcceeCccccc------------CceeeeeeccCCccchhHHHHHhcccc
Confidence            99998776443  1223332 55899999999877665543            23799999999987632  11 34456


Q ss_pred             cCCEEEccCCcccc------cccCccC---CCCccEEEc-cCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCC
Q psy16110        401 TLDNLNVRDNQITT------LSSSALN---YKLLTKLDL-SHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP  470 (719)
Q Consensus       401 ~L~~L~l~~n~l~~------~~~~~~~---~~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~  470 (719)
                      .++.+++..+.+..      +....+.   --.++.+++ ..+.+.+..+. +..+++|+.|++++| .+..++  .+..
T Consensus       230 ~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~-~~~~l~--~l~~  305 (606)
T 3vq2_A          230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGV-SIKYLE--DVPK  305 (606)
T ss_dssp             TCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESC-CCCCCC--CCCT
T ss_pred             ccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCc-cchhhh--hccc
Confidence            67777665443322      1111111   124677777 66777777665 889999999999999 778888  4788


Q ss_pred             CCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccccc--CCccCCCCCCCE
Q psy16110        471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR--VGSLYGLPSMKR  548 (719)
Q Consensus       471 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~l~~l~~L~~  548 (719)
                      +++|++|++++|.+..++  .+ .+++|++|++++|......  .+..+++|++|++++|++++..  +..+..+++|++
T Consensus       306 ~~~L~~L~l~~n~l~~lp--~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~  380 (606)
T 3vq2_A          306 HFKWQSLSIIRCQLKQFP--TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH  380 (606)
T ss_dssp             TCCCSEEEEESCCCSSCC--CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCE
T ss_pred             cccCCEEEcccccCcccc--cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccE
Confidence            999999999999998887  34 8999999999999543222  4678999999999999998874  677889999999


Q ss_pred             EEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCc-CcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEE
Q psy16110        549 LDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFP-SSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID  627 (719)
Q Consensus       549 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  627 (719)
                      |++++|.++.++ ..+     ..+++|++|++++|.+.+..+ ..+..+++|++|++++|+++...+..+.++++|++|+
T Consensus       381 L~L~~n~l~~~~-~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  454 (606)
T 3vq2_A          381 LDLSFNGAIIMS-ANF-----MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK  454 (606)
T ss_dssp             EECCSCSEEEEC-CCC-----TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             eECCCCccccch-hhc-----cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence            999999998776 333     346999999999999999877 6899999999999999999998888899999999999


Q ss_pred             CCCCCCcc-cCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCcee
Q psy16110        628 LSNNQLKT-IDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVF  705 (719)
Q Consensus       628 Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~  705 (719)
                      +++|.+++ +.+..+..+++|++|++++|+++++++..|..+++|++|++++|+++.+++..|.++++| +|++++|++.
T Consensus       455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            99999997 466689999999999999999999999999999999999999999999988899999999 9999999997


Q ss_pred             eec
Q psy16110        706 QSH  708 (719)
Q Consensus       706 ~~~  708 (719)
                      ..+
T Consensus       535 ~~p  537 (606)
T 3vq2_A          535 TSK  537 (606)
T ss_dssp             CEE
T ss_pred             ccC
Confidence            544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.2e-50  Score=459.23  Aligned_cols=530  Identities=22%  Similarity=0.283  Sum_probs=422.9

Q ss_pred             cccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcccccchhccccEEEc
Q psy16110        117 QLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRL  196 (719)
Q Consensus       117 ~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~L  196 (719)
                      ...++|.+.+++     +||.++               |        .++++|||++|+|+.++...|. .+++|++|+|
T Consensus        33 ~~~~~c~~~~l~-----~vP~~l---------------p--------~~~~~LdLs~N~i~~l~~~~f~-~l~~L~~L~L   83 (635)
T 4g8a_A           33 NITYQCMELNFY-----KIPDNL---------------P--------FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDL   83 (635)
T ss_dssp             TTEEECTTSCCS-----SCCSSS---------------C--------TTCCEEECTTSCCCEECTTTTT-TCTTCCEEEC
T ss_pred             CCEEECCCCCcC-----ccCCCC---------------C--------cCCCEEEeeCCCCCCCCHHHHh-CCCCCCEEEC
Confidence            367899987776     455433               2        2599999999999999999996 6799999999


Q ss_pred             CCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCC
Q psy16110        197 ADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN  276 (719)
Q Consensus       197 s~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n  276 (719)
                      ++|.|++     +++++|.++++|++|+|++|+++.+++++|.++++|++|++++|+++++++.+|+++++|++|++++|
T Consensus        84 s~N~i~~-----i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N  158 (635)
T 4g8a_A           84 SRCEIQT-----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN  158 (635)
T ss_dssp             TTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred             CCCcCCC-----cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC
Confidence            9999986     45578999999999999999999999999999999999999999999999988999999999999999


Q ss_pred             cCcccC-CCcccCCCccCEEEccCCCCcccCcccccCcccCc----EEEcCCCCCCCcCCCccccccccCCCCCCEEeCC
Q psy16110        277 RIGTLK-ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIH----ILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG  351 (719)
Q Consensus       277 ~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~  351 (719)
                      .++.+. +..+..+++|++|++++|+++++.+..|..+.+++    .++++.|.++.++...+      ....++.+++.
T Consensus       159 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~------~~~~~~~l~l~  232 (635)
T 4g8a_A          159 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF------KEIRLHKLTLR  232 (635)
T ss_dssp             CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT------TTCEEEEEEEE
T ss_pred             ccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc------cchhhhhhhhh
Confidence            998764 56788999999999999999999988887776654    78899999988877543      23456778887


Q ss_pred             CCCCCccccccccCcccccccccccCCCccEEECCCCCC------cCcCC--cchhccCCEEEccCCccc----ccccCc
Q psy16110        352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL------INLES--TGLEDTLDNLNVRDNQIT----TLSSSA  419 (719)
Q Consensus       352 ~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l------~~~~~--~~~~~~L~~L~l~~n~l~----~~~~~~  419 (719)
                      +|....          ...+..+..+..++...+..+..      .....  ......+....+..+...    ......
T Consensus       233 ~n~~~~----------~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~  302 (635)
T 4g8a_A          233 NNFDSL----------NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF  302 (635)
T ss_dssp             SCCSSH----------HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTT
T ss_pred             cccccc----------cccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhh
Confidence            775421          01122344455555554432211      11111  222334444444433322    222222


Q ss_pred             cCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCcc
Q psy16110        420 LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLK  499 (719)
Q Consensus       420 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~  499 (719)
                      ....+++.+++.++.+..+..  +....+|+.|++.+| .+..++.   ..+..|+.+++..|.......  ...+++|+
T Consensus       303 ~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~-~~~~~~~---~~l~~L~~l~l~~n~~~~~~~--~~~l~~L~  374 (635)
T 4g8a_A          303 NCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNC-KFGQFPT---LKLKSLKRLTFTSNKGGNAFS--EVDLPSLE  374 (635)
T ss_dssp             GGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESC-EESSCCC---CBCTTCCEEEEESCCSCCBCC--CCBCTTCC
T ss_pred             hhhcccccccccccccccccc--cccchhhhhhhcccc-cccCcCc---ccchhhhhcccccccCCCCcc--cccccccc
Confidence            336788999998888776643  566788999999999 6666664   346788999999988776553  45789999


Q ss_pred             EEEccCCcCCCC--ChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcE
Q psy16110        500 YLCLAHNHLTEI--PEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEE  577 (719)
Q Consensus       500 ~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~  577 (719)
                      .+++++|.+...  ....+..+.+|+++++..+.+... +..+..+++|+.+++.++.........    .+..+++++.
T Consensus       375 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~l~~l~~  449 (635)
T 4g8a_A          375 FLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIY  449 (635)
T ss_dssp             EEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSC----TTTTCTTCCE
T ss_pred             cchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccc----cccccccccc
Confidence            999999988632  334566789999999999988776 456888999999999998766543321    2235699999


Q ss_pred             EECcCCCCCCcCcCcccCCCCccEEEcCCCCC-CCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCc
Q psy16110        578 LNLNNNELTYLFPSSFTIHSKLKTLKLAFNKF-NYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNN  656 (719)
Q Consensus       578 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~  656 (719)
                      +++++|.+.+..+..+..++.|++|++++|++ ..+.+..+..+++|++|+|++|+++++++..|.++++|++|+|++|+
T Consensus       450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~  529 (635)
T 4g8a_A          450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  529 (635)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence            99999999999999999999999999999974 45666778999999999999999999999999999999999999999


Q ss_pred             CCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCc-ccc-EEecCCCceeeeccCCCccccC
Q psy16110        657 IDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTF-LYT-NYDMAPNLVFQSHLSGHRCECA  717 (719)
Q Consensus       657 l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l-~~L-~L~l~~N~l~~~~~~~~~C~c~  717 (719)
                      |+++++..|..+++|++|||++|+++.+++..|.++ ++| +|+|++||+        .|+|+
T Consensus       530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~--------~C~C~  584 (635)
T 4g8a_A          530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF--------ACTCE  584 (635)
T ss_dssp             CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB--------CCSGG
T ss_pred             CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC--------cccCC
Confidence            999999999999999999999999999999999988 689 999999999        99997

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-49  Score=468.83  Aligned_cols=505  Identities=22%  Similarity=0.251  Sum_probs=421.7

Q ss_pred             cEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCC-CcccCcCccCCCccCc
Q psy16110        167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQ-IKAIEEGILKGCDNLL  245 (719)
Q Consensus       167 ~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~  245 (719)
                      +..|.++++++.||. .    +++|++|+|++|.+++.     .+.+|.++++|++|+|++|. +..+++.+|.++++|+
T Consensus         7 ~~~dcs~~~L~~vP~-l----p~~l~~LdLs~N~i~~i-----~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~   76 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ-V----LNTTERLLLSFNYIRTV-----TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR   76 (844)
T ss_dssp             EEEEESCCCSSCCCS-S----CTTCCEEEEESCCCCEE-----CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred             eEEEccCCCCCCCCC-C----CCCcCEEECCCCcCCcc-----ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence            578899999999997 3    47999999999999873     34689999999999999994 5667788899999999


Q ss_pred             EEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCC--CcccCCCccCEEEccCCCCcccCc-ccccCcccCcEEEcC
Q psy16110        246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKA--DSFLSQRWLERIILRGNRLTTIEG-GAFNGLAKIHILNLG  322 (719)
Q Consensus       246 ~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~  322 (719)
                      +|+|++|.++.+++.+|+++++|++|++++|.+++..+  ..|..+++|++|++++|.++++.+ ..|+++++|++|+++
T Consensus        77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls  156 (844)
T 3j0a_A           77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS  156 (844)
T ss_dssp             EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred             EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence            99999999999977799999999999999999987444  348999999999999999998865 579999999999999


Q ss_pred             CCCCCCcCCCccccccccCC--CCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcc---
Q psy16110        323 YNRLNKLNSDTFQGGAFNGL--AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG---  397 (719)
Q Consensus       323 ~n~l~~~~~~~~~~~~l~~l--~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~---  397 (719)
                      +|.++.+.+..+     ..+  ++|+.|++++|.+.......+..    .+..+.. ..|+.|++++|.+....+..   
T Consensus       157 ~N~i~~~~~~~l-----~~l~~~~L~~L~L~~n~l~~~~~~~~~~----~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~  226 (844)
T 3j0a_A          157 SNQIFLVCEHEL-----EPLQGKTLSFFSLAANSLYSRVSVDWGK----CMNPFRN-MVLEILDVSGNGWTVDITGNFSN  226 (844)
T ss_dssp             SSCCCCCCSGGG-----HHHHHCSSCCCEECCSBSCCCCCCCCCS----SSCTTTT-CCBSEEBCSSCCSSTTTTSGGGG
T ss_pred             CCcCCeeCHHHc-----ccccCCccceEECCCCccccccccchhh----cCCcccc-CceeEEecCCCcCchhHHHHHHh
Confidence            999998776643     334  78999999999886533222211    0111221 25999999999877543311   


Q ss_pred             --hhccCCEEEccCCc---------ccccccCccC---CCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCC
Q psy16110        398 --LEDTLDNLNVRDNQ---------ITTLSSSALN---YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL  463 (719)
Q Consensus       398 --~~~~L~~L~l~~n~---------l~~~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l  463 (719)
                        ....++.+.++.+.         +.......+.   .++|+.|++++|.+.++.+..|..+++|+.|++++| .+..+
T Consensus       227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~  305 (844)
T 3j0a_A          227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKI  305 (844)
T ss_dssp             TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEE
T ss_pred             hcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCC
Confidence              12457788876332         2222222222   478999999999999999999999999999999999 88888


Q ss_pred             CCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCC
Q psy16110        464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL  543 (719)
Q Consensus       464 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l  543 (719)
                      ++..|.++++|++|++++|.++.+.+..|..+++|++|++++|.+..++...|..+++|++|++++|.++++.     .+
T Consensus       306 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~  380 (844)
T 3j0a_A          306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FI  380 (844)
T ss_dssp             CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SC
T ss_pred             ChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CC
Confidence            8888999999999999999999998889999999999999999999999888999999999999999988653     37


Q ss_pred             CCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCc-CcccCCCCccEEEcCCCCCCCcChh-hhcCCC
Q psy16110        544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFP-SSFTIHSKLKTLKLAFNKFNYFPKE-LILGLS  621 (719)
Q Consensus       544 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~  621 (719)
                      ++|+.|++++|+++.++..         ..+++.|++++|.+++... ..+..+++|++|++++|+++.++.. .+..++
T Consensus       381 ~~L~~L~l~~N~l~~l~~~---------~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  451 (844)
T 3j0a_A          381 PSIPDIFLSGNKLVTLPKI---------NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP  451 (844)
T ss_dssp             CSCSEEEEESCCCCCCCCC---------CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT
T ss_pred             CCcchhccCCCCccccccc---------ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC
Confidence            8999999999999876543         2679999999999998632 2355899999999999999976543 356689


Q ss_pred             CCCEEECCCCCCcc-----cCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-
Q psy16110        622 YLQEIDLSNNQLKT-----IDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-  695 (719)
Q Consensus       622 ~L~~L~Ls~n~l~~-----~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-  695 (719)
                      +|+.|++++|.++.     ..+..|.++++|++|+|++|+++++++..|..+++|+.|+|++|+++.+|+..|.  ++| 
T Consensus       452 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~  529 (844)
T 3j0a_A          452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLE  529 (844)
T ss_dssp             TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCC
T ss_pred             ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cccc
Confidence            99999999999974     3445688999999999999999999999999999999999999999999988776  789 


Q ss_pred             EEecCCCceeeec
Q psy16110        696 NYDMAPNLVFQSH  708 (719)
Q Consensus       696 ~L~l~~N~l~~~~  708 (719)
                      .|++++|++....
T Consensus       530 ~L~Ls~N~l~~~~  542 (844)
T 3j0a_A          530 ILDISRNQLLAPN  542 (844)
T ss_dssp             EEEEEEECCCCCC
T ss_pred             EEECCCCcCCCCC
Confidence            9999999997643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.5e-48  Score=440.32  Aligned_cols=482  Identities=20%  Similarity=0.287  Sum_probs=311.8

Q ss_pred             EEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEE
Q psy16110        169 LDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELR  248 (719)
Q Consensus       169 L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  248 (719)
                      .|.+++.++.+|..++    ++|++|+|++|.+++..     +.+|.++++|++|+|++|+++.+++++|.++++|++|+
T Consensus        10 c~~~~~~l~~ip~~~~----~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLT----AAMKSLDLSFNKITYIG-----HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             EECTTSCCSSCCSCCC----TTCCEEECCSSCCCEEC-----SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             EECCCCccccccccCC----CCccEEECcCCccCccC-----hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            4555555555555432    45566666666555422     23455566666666666666655555555666666666


Q ss_pred             CCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccC-CCcccCCCccCEEEccCCC-CcccCcccccCcccCcEEEcCCCCC
Q psy16110        249 MDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK-ADSFLSQRWLERIILRGNR-LTTIEGGAFNGLAKIHILNLGYNRL  326 (719)
Q Consensus       249 L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l  326 (719)
                      +++|.++++++..++++++|++|++++|.++.+. +..+.++++|++|++++|. +..+++.+|.++++|++|++++|.+
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            6666666555544555666666666666655432 2445556666666666655 4444445555566666666666655


Q ss_pred             CCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCC-----cchhcc
Q psy16110        327 NKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES-----TGLEDT  401 (719)
Q Consensus       327 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-----~~~~~~  401 (719)
                      ++..+.     .+..+++|++|++++|.+..++..           .+..+++|++|++++|.+++.+.     ....+.
T Consensus       161 ~~~~~~-----~l~~l~~L~~L~l~~n~~~~~~~~-----------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  224 (549)
T 2z81_A          161 RNYQSQ-----SLKSIRDIHHLTLHLSESAFLLEI-----------FADILSSVRYLELRDTNLARFQFSPLPVDEVSSP  224 (549)
T ss_dssp             CEECTT-----TTTTCSEEEEEEEECSBSTTHHHH-----------HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred             cccChh-----hhhccccCceEecccCcccccchh-----------hHhhcccccEEEccCCccccccccccchhhhhhc
Confidence            554333     344455566666655554332211           11234556666666665554321     223345


Q ss_pred             CCEEEccCCcccccc-----cCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccE
Q psy16110        402 LDNLNVRDNQITTLS-----SSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEV  476 (719)
Q Consensus       402 L~~L~l~~n~l~~~~-----~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~  476 (719)
                      |+.|++++|.+++..     .....+++|+.+++++|.+.++....                   ......+..+.+++.
T Consensus       225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~-------------------~~~~~~~~~l~~L~~  285 (549)
T 2z81_A          225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN-------------------PSESDVVSELGKVET  285 (549)
T ss_dssp             CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC-------------------CCTTTCCCCCTTCCE
T ss_pred             ccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc-------------------ccchhhhhhhccccc
Confidence            566666665544321     11123556666666666554432100                   000011233455555


Q ss_pred             EEcCCCCCCCCC-----chhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccccc---CCccCCCCCCCE
Q psy16110        477 LDLAATGLKSIP-----QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR---VGSLYGLPSMKR  548 (719)
Q Consensus       477 L~ls~n~l~~~~-----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---~~~l~~l~~L~~  548 (719)
                      |++.++.+....     ...+....+|++|++++|.+..+|...+..+++|++|++++|++++..   +..+..+++|++
T Consensus       286 L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~  365 (549)
T 2z81_A          286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT  365 (549)
T ss_dssp             EEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCE
T ss_pred             ccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcE
Confidence            555555443321     112334578999999999999999887778899999999999998755   345778899999


Q ss_pred             EEccCCcCCcccC--CcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEE
Q psy16110        549 LDLSFNKLTTFKG--DYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEI  626 (719)
Q Consensus       549 L~L~~n~l~~~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  626 (719)
                      |++++|++++++.  ..+.     .+++|++|++++|+++++ |..+..+++|++|++++|+++.++...   .++|++|
T Consensus       366 L~Ls~N~l~~~~~~~~~~~-----~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~~~~---~~~L~~L  436 (549)
T 2z81_A          366 LVLSQNHLRSMQKTGEILL-----TLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVL  436 (549)
T ss_dssp             EECTTSCCCCHHHHHHHGG-----GCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSCCCTTS---CTTCSEE
T ss_pred             EEccCCcccccccchhhhh-----cCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCCcccccchh---cCCceEE
Confidence            9999999987653  3333     358999999999999865 778888999999999999999887543   3689999


Q ss_pred             ECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCcee
Q psy16110        627 DLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVF  705 (719)
Q Consensus       627 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~  705 (719)
                      ++++|++++++    ..+++|++|++++|+++.++..  ..+++|++|+|++|+++.+++..|..+++| .+++++|++ 
T Consensus       437 ~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~-  509 (549)
T 2z81_A          437 DVSNNNLDSFS----LFLPRLQELYISRNKLKTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW-  509 (549)
T ss_dssp             ECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCCG--GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB-
T ss_pred             ECCCCChhhhc----ccCChhcEEECCCCccCcCCCc--ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc-
Confidence            99999998764    4788999999999999987763  457899999999999999999889999999 999999998 


Q ss_pred             eeccCCCccccC
Q psy16110        706 QSHLSGHRCECA  717 (719)
Q Consensus       706 ~~~~~~~~C~c~  717 (719)
                             .|+|.
T Consensus       510 -------~~~~~  514 (549)
T 2z81_A          510 -------DCSCP  514 (549)
T ss_dssp             -------CCCHH
T ss_pred             -------cCCCc
Confidence                   78775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.1e-47  Score=430.82  Aligned_cols=460  Identities=19%  Similarity=0.239  Sum_probs=311.9

Q ss_pred             cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110        165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL  244 (719)
Q Consensus       165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  244 (719)
                      ++++|++++|+++.++...|. .+++|++|+|++|.+.+.     .+++|.++++|++|+|++|+++.+++..|+++++|
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  100 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLR-ACANLQVLILKSSRINTI-----EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL  100 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTS-SCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred             CccEEECcCCccCccChhhhh-cCCcccEEECCCCCcCcc-----ChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence            599999999999999877775 679999999999999873     34679999999999999999999999889999999


Q ss_pred             cEEECCCCcCCcCC-CCCCCCCCCCcEEEcCCCc-CcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcC
Q psy16110        245 LELRMDHNRFTSIP-SVSLNGPRALRILSMAYNR-IGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLG  322 (719)
Q Consensus       245 ~~L~L~~n~l~~i~-~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  322 (719)
                      ++|++++|.++.++ +..++++++|++|++++|. +..+++..|..+++|++|++++|.+++..+..++.+++|++|+++
T Consensus       101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  180 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH  180 (549)
T ss_dssp             CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence            99999999999653 2368999999999999998 677777889999999999999999999999999999999999999


Q ss_pred             CCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCC------c
Q psy16110        323 YNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES------T  396 (719)
Q Consensus       323 ~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~------~  396 (719)
                      .|.+..++..     .+..+++|++|++++|+++.++....        .....+++|+.|++++|.+++...      .
T Consensus       181 ~n~~~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~  247 (549)
T 2z81_A          181 LSESAFLLEI-----FADILSSVRYLELRDTNLARFQFSPL--------PVDEVSSPMKKLAFRGSVLTDESFNELLKLL  247 (549)
T ss_dssp             CSBSTTHHHH-----HHHSTTTBSEEEEESCBCTTCCCCCC--------SSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred             cCcccccchh-----hHhhcccccEEEccCCcccccccccc--------chhhhhhcccceeccccccchhHHHHHHHHh
Confidence            9998776543     24568999999999999876532111        112347899999999998775322      2


Q ss_pred             chhccCCEEEccCCcccccccC-------ccCCCCccEEEccCCCCCCcC-----cccccCCCcCcEEeCcCCCCCCCCC
Q psy16110        397 GLEDTLDNLNVRDNQITTLSSS-------ALNYKLLTKLDLSHNNLKELE-----PTAFTNVPTLLHLNLSRNAHLSSLP  464 (719)
Q Consensus       397 ~~~~~L~~L~l~~n~l~~~~~~-------~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~~l~~l~  464 (719)
                      ...+.|+.+++++|.+.++...       ...+++|+.|++.++.+....     +..+...++|+.|+++         
T Consensus       248 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~---------  318 (549)
T 2z81_A          248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE---------  318 (549)
T ss_dssp             GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEE---------
T ss_pred             hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEec---------
Confidence            4457899999999988765422       122556666666666554321     0111222344445554         


Q ss_pred             CCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCCh---hhhcCCCCCCEEeCCCCccccccC--Cc
Q psy16110        465 VGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE---MMFKNLLNLTYLDLSNNNIVNLRV--GS  539 (719)
Q Consensus       465 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~i~~~~~--~~  539 (719)
                                      +|.+..++...+..+++|++|++++|++++...   ..+..+++|++|++++|+++++.+  ..
T Consensus       319 ----------------~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  382 (549)
T 2z81_A          319 ----------------NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI  382 (549)
T ss_dssp             ----------------SSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH
T ss_pred             ----------------cCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhh
Confidence                            444444444333344455555555554443211   113344455555555555544321  23


Q ss_pred             cCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcC
Q psy16110        540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILG  619 (719)
Q Consensus       540 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  619 (719)
                      +..+++|++|++++|+++.++...      ..+++|++|++++|.++++. ..+  .++|++|++++|++++++    ..
T Consensus       383 ~~~l~~L~~L~Ls~N~l~~lp~~~------~~~~~L~~L~Ls~N~l~~l~-~~~--~~~L~~L~Ls~N~l~~~~----~~  449 (549)
T 2z81_A          383 LLTLKNLTSLDISRNTFHPMPDSC------QWPEKMRFLNLSSTGIRVVK-TCI--PQTLEVLDVSNNNLDSFS----LF  449 (549)
T ss_dssp             GGGCTTCCEEECTTCCCCCCCSCC------CCCTTCCEEECTTSCCSCCC-TTS--CTTCSEEECCSSCCSCCC----CC
T ss_pred             hhcCCCCCEEECCCCCCccCChhh------cccccccEEECCCCCccccc-chh--cCCceEEECCCCChhhhc----cc
Confidence            444555555555555554433221      12345555555555554432 111  145666666666665543    34


Q ss_pred             CCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110        620 LSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK  683 (719)
Q Consensus       620 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  683 (719)
                      +++|++|++++|+++.++.  ...+++|++|++++|+++++++..|..+++|+.|++++|++.+
T Consensus       450 l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          450 LPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  511 (549)
T ss_dssp             CTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred             CChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence            5666667777776666554  2456677777777777777766666667777777777777663

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-45  Score=418.16  Aligned_cols=518  Identities=21%  Similarity=0.281  Sum_probs=380.5

Q ss_pred             ccccccCCCCcccccccccccCCCCCC-CCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCccccc
Q psy16110        107 PCRCKKMSESQLAMDCDNVAFPNGEYP-TLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFS  185 (719)
Q Consensus       107 ~C~c~~~~~~~~~~~c~~~~l~~~~~~-~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~f~  185 (719)
                      .|+|..   ....++|.+.+++  .+| .+|..  +..+.+..+.++.++...|... .+|++|+|++|+++.++...|.
T Consensus         2 ~c~~~~---~~~~~~c~~~~l~--~ip~~l~~~--l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~   73 (570)
T 2z63_A            2 PCVEVV---PNITYQCMELNFY--KIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQ   73 (570)
T ss_dssp             CSEEEE---TTTEEECCSSCCS--SCCSSSCSS--CCEEECCSCCCCEECTTTTTTC-SSCCEEECTTCCCCEECTTTTT
T ss_pred             CccccC---CCcEEEeCCCCcc--ccCCCcccc--ccEEEccCCccCccChhHhhCC-CCceEEECCCCcCCccCccccc
Confidence            355542   2467999987776  333 24433  3455666777888887777665 5799999999999999988885


Q ss_pred             chhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCC-CCCCCC
Q psy16110        186 PHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIP-SVSLNG  264 (719)
Q Consensus       186 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~-~~~l~~  264 (719)
                       .+++|++|+|++|.+.+.     .+.+|+++++|++|++++|+++.+++..|+++++|++|++++|.++.++ +..+++
T Consensus        74 -~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~  147 (570)
T 2z63_A           74 -SLSHLSTLILTGNPIQSL-----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN  147 (570)
T ss_dssp             -TCTTCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred             -CchhCCEEeCcCCcCCcc-----CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcc
Confidence             679999999999999863     3468999999999999999999998878999999999999999999742 337999


Q ss_pred             CCCCcEEEcCCCcCcccCCCcccCCCcc----CEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCcccccccc
Q psy16110        265 PRALRILSMAYNRIGTLKADSFLSQRWL----ERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFN  340 (719)
Q Consensus       265 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L----~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  340 (719)
                      +++|++|++++|.++.+.+..++.+.+|    +.|++++|.++++.+.+|..+ +|++|++++|......   +. ..+.
T Consensus       148 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~---~~-~~~~  222 (570)
T 2z63_A          148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV---MK-TCIQ  222 (570)
T ss_dssp             CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTH---HH-HHHH
T ss_pred             cCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccc---hh-hhhc
Confidence            9999999999999999988888888888    899999999999999888876 8999999988543211   11 1355


Q ss_pred             CCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCC-cccccccCc
Q psy16110        341 GLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDN-QITTLSSSA  419 (719)
Q Consensus       341 ~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~  419 (719)
                      .+++++.+.+....+...                   ..++  .+....+..+..    -.++.++++++ .+.+..+..
T Consensus       223 ~l~~l~~~~l~~~~~~~~-------------------~~l~--~~~~~~~~~l~~----l~l~~l~l~~~~~~~~~~~~~  277 (570)
T 2z63_A          223 GLAGLEVHRLVLGEFRNE-------------------GNLE--KFDKSALEGLCN----LTIEEFRLAYLDYYLDDIIDL  277 (570)
T ss_dssp             TTTTCEEEEEEEEECCCC-------------------SSCE--ECCTTTTGGGGG----SEEEEEEEEETTEEESCSTTT
T ss_pred             CccccceeeeccccccCc-------------------hhhh--hcchhhhccccc----cchhhhhhhcchhhhhhchhh
Confidence            666776665543322110                   0111  001111111100    02333444433 222222222


Q ss_pred             -cCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCc
Q psy16110        420 -LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNL  498 (719)
Q Consensus       420 -~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L  498 (719)
                       ..+++|+.|++++|.+.+++. .+..+ +|++|++++| .+..+|.   ..+++|+.|++++|.+......  ..+++|
T Consensus       278 ~~~l~~L~~L~l~~~~l~~l~~-~~~~~-~L~~L~l~~n-~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L  349 (570)
T 2z63_A          278 FNCLTNVSSFSLVSVTIERVKD-FSYNF-GWQHLELVNC-KFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSL  349 (570)
T ss_dssp             TGGGTTCSEEEEESCEECSCCB-CCSCC-CCSEEEEESC-BCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTC
T ss_pred             hcCcCcccEEEecCccchhhhh-hhccC-CccEEeeccC-cccccCc---ccccccCEEeCcCCcccccccc--ccCCCC
Confidence             225666666666666665433 34445 6666666666 5555554   3456677777777765554432  567778


Q ss_pred             cEEEccCCcCCCCC--hhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccC-CcCCCCCCCCCCCC
Q psy16110        499 KYLCLAHNHLTEIP--EMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKG-DYFNTKSKPNTSSL  575 (719)
Q Consensus       499 ~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~l~~L  575 (719)
                      ++|++++|.++...  +..+..+++|++|++++|++.+..+. +..+++|++|++++|.+....+ ..+     ..+++|
T Consensus       350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~l~~L  423 (570)
T 2z63_A          350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF-----LSLRNL  423 (570)
T ss_dssp             CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTT-----TTCTTC
T ss_pred             CEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhh-----hcCCCC
Confidence            88888888777653  34567788888888888888877554 7888888888888888776543 233     346889


Q ss_pred             cEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCC-C-cChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCC
Q psy16110        576 EELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN-Y-FPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLN  653 (719)
Q Consensus       576 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  653 (719)
                      ++|++++|.+.+..+..+..+++|++|++++|+++ + +| ..+..+++|++|++++|+++++.+..+.++++|++|+++
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  502 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA  502 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch-hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence            99999999998888888999999999999999887 2 44 557889999999999999999888889999999999999


Q ss_pred             CCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110        654 NNNIDAISETCFFNSSQLQIINLSFNRLEK  683 (719)
Q Consensus       654 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  683 (719)
                      +|+++++++..|..+++|+.|++++|++++
T Consensus       503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            999999988889999999999999999884

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.1e-45  Score=406.75  Aligned_cols=461  Identities=19%  Similarity=0.221  Sum_probs=322.8

Q ss_pred             cEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcE
Q psy16110        167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLE  246 (719)
Q Consensus       167 ~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  246 (719)
                      ++||+++|+++.+|..++    ++|++|+|++|.+.+     +.+.+|.++++|++|+|++|+++.+.+..|.++++|++
T Consensus         3 ~~l~ls~n~l~~ip~~~~----~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   73 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS----QKTTILNISQNYISE-----LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY   73 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC----TTCSEEECCSSCCCC-----CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCE
T ss_pred             ceEecCCCCccccccccc----ccccEEECCCCcccc-----cChhhccccccccEEecCCCccCCcChHHhhcccCCCE
Confidence            679999999999998664    799999999999986     44568999999999999999999998888999999999


Q ss_pred             EECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccC-CCcccCCCccCEEEccCCCCcccCcccccCcccC--cEEEcCC
Q psy16110        247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK-ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKI--HILNLGY  323 (719)
Q Consensus       247 L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L--~~L~L~~  323 (719)
                      |++++|+++++|..   .+++|++|++++|.++.+. |..|+.+++|++|++++|.+++   ..+..+++|  ++|++++
T Consensus        74 L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~  147 (520)
T 2z7x_B           74 LDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL  147 (520)
T ss_dssp             EECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred             EecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence            99999999999874   8999999999999998853 5789999999999999999876   356777777  9999999


Q ss_pred             CCC--CCcCCCccccccccCCC-CCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhc
Q psy16110        324 NRL--NKLNSDTFQGGAFNGLA-KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLED  400 (719)
Q Consensus       324 n~l--~~~~~~~~~~~~l~~l~-~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~  400 (719)
                      |.+  ....+..     +..+. +...+++++|.+...          .....+..+++|+.+++++|.....-.     
T Consensus       148 n~l~~~~~~~~~-----l~~l~~~~l~l~l~~n~~~~~----------~~~~~~~~l~~L~~L~l~~n~~~~~~~-----  207 (520)
T 2z7x_B          148 GETYGEKEDPEG-----LQDFNTESLHIVFPTNKEFHF----------ILDVSVKTVANLELSNIKCVLEDNKCS-----  207 (520)
T ss_dssp             CTTTTSSCCTTT-----TTTCCEEEEEEECCSSSCCCC----------CCCCCCTTCSEEEECCEEECCSTTTTH-----
T ss_pred             cccccccccccc-----ccccccceEEEEeccCcchhh----------hhhhhhhcccceeeccccccccccccc-----
Confidence            988  5544432     22222 233567777765321          112234456777777777764100000     


Q ss_pred             cCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccc---cCCCcCcEEeCcCCCCCCCCCCCCC----CCCCC
Q psy16110        401 TLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF---TNVPTLLHLNLSRNAHLSSLPVGGF----DPLKK  473 (719)
Q Consensus       401 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~~l~~l~~~~~----~~l~~  473 (719)
                                .+.+..+....+++|+.|++++|.+.+.....+   ...++|++|++++|...+.+|...|    ..+++
T Consensus       208 ----------~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~  277 (520)
T 2z7x_B          208 ----------YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA  277 (520)
T ss_dssp             ----------HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCE
T ss_pred             ----------eeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCce
Confidence                      011111112223444444444443332110000   0123555555555522224444332    55667


Q ss_pred             ccEEEcCCCCCCCCCchhhcCC---CCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEE
Q psy16110        474 LEVLDLAATGLKSIPQYQFDEL---LNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLD  550 (719)
Q Consensus       474 L~~L~ls~n~l~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  550 (719)
                      |+.+++++|.+ .++...+..+   .+|+.|++++|.+..++.  +..+++|++|++++|++++..|..+..+++|++|+
T Consensus       278 L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  354 (520)
T 2z7x_B          278 LSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI  354 (520)
T ss_dssp             EEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEE
T ss_pred             eEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEE
Confidence            77777777766 5553333333   568888888887766542  25678888888888888887777788888888888


Q ss_pred             ccCCcCCcccC--CcCCCCCCCCCCCCcEEECcCCCCCC-cCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEE
Q psy16110        551 LSFNKLTTFKG--DYFNTKSKPNTSSLEELNLNNNELTY-LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID  627 (719)
Q Consensus       551 L~~n~l~~~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  627 (719)
                      +++|++++++.  ..+.     .+++|++|++++|.+++ +.+..+..+++|++|++++|++++..+..+.  ++|++|+
T Consensus       355 L~~N~l~~l~~~~~~~~-----~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~  427 (520)
T 2z7x_B          355 LQMNQLKELSKIAEMTT-----QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLD  427 (520)
T ss_dssp             CCSSCCCBHHHHHHHHT-----TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEE
T ss_pred             ccCCccCccccchHHHh-----hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEE
Confidence            88888875432  2232     35788888888888887 4444577888888888888888764443332  6888899


Q ss_pred             CCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110        628 LSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK  683 (719)
Q Consensus       628 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  683 (719)
                      +++|+++.++.. +..+++|++|++++|+++++++..|..+++|++|++++|++++
T Consensus       428 Ls~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          428 LHSNKIKSIPKQ-VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCcccccchh-hhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence            998888877764 4488889999999998888877668888899999999998885

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.3e-45  Score=407.14  Aligned_cols=453  Identities=18%  Similarity=0.196  Sum_probs=344.0

Q ss_pred             cEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEE
Q psy16110        192 QELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRIL  271 (719)
Q Consensus       192 ~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L  271 (719)
                      ++|++++|.++. +|.     .+.  ++|++|+|++|+++.+++..|.++++|++|++++|+++.+++.+|+++++|++|
T Consensus         3 ~~l~ls~n~l~~-ip~-----~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   74 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPK-----DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL   74 (520)
T ss_dssp             CEEECTTSCCSS-CCC-----SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred             ceEecCCCCccc-ccc-----ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence            578888888874 443     222  788888888888888887778888888888888888888766678888888888


Q ss_pred             EcCCCcCcccCCCcccCCCccCEEEccCCCCccc-CcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCC--CEE
Q psy16110        272 SMAYNRIGTLKADSFLSQRWLERIILRGNRLTTI-EGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI--HIL  348 (719)
Q Consensus       272 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L--~~L  348 (719)
                      ++++|.++.++..   .+++|++|++++|.++++ .|..|+++++|++|++++|.++..        .+..+++|  ++|
T Consensus        75 ~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--------~~~~l~~L~L~~L  143 (520)
T 2z7x_B           75 DLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS--------SVLPIAHLNISKV  143 (520)
T ss_dssp             ECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG--------GGGGGTTSCEEEE
T ss_pred             ecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh--------hccccccceeeEE
Confidence            8888888877544   688888888888888875 356788888888888888877652        34556666  778


Q ss_pred             eCCCCCC--CccccccccCcccccccccccCC-CccEEECCCCCCcCcCCcchhccCCEEEccCCccccc-ccCc-cCCC
Q psy16110        349 NLGYNRL--NKLNSDTFQGTHITIFSFFQDFQ-KLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTL-SSSA-LNYK  423 (719)
Q Consensus       349 ~L~~n~l--~~i~~~~f~~~~~~~~~~l~~~~-~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~-~~~~  423 (719)
                      ++++|.+  ....           |..+..+. +...+                      ++++|.+.+. +... ..++
T Consensus       144 ~l~~n~l~~~~~~-----------~~~l~~l~~~~l~l----------------------~l~~n~~~~~~~~~~~~~l~  190 (520)
T 2z7x_B          144 LLVLGETYGEKED-----------PEGLQDFNTESLHI----------------------VFPTNKEFHFILDVSVKTVA  190 (520)
T ss_dssp             EEEECTTTTSSCC-----------TTTTTTCCEEEEEE----------------------ECCSSSCCCCCCCCCCTTCS
T ss_pred             Eeecccccccccc-----------cccccccccceEEE----------------------EeccCcchhhhhhhhhhccc
Confidence            8877776  2221           11222221 12223                      3444443322 1212 2377


Q ss_pred             CccEEEccCCC-------CCCcCcccccCCCcCcEEeCcCCCCCCCC-CCCCC--CCCCCccEEEcCCCCCCCCCchhh-
Q psy16110        424 LLTKLDLSHNN-------LKELEPTAFTNVPTLLHLNLSRNAHLSSL-PVGGF--DPLKKLEVLDLAATGLKSIPQYQF-  492 (719)
Q Consensus       424 ~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~n~~l~~l-~~~~~--~~l~~L~~L~ls~n~l~~~~~~~~-  492 (719)
                      +|+.+++++|.       +.+..+ .+..+++|+.|++++| .+... .....  ...++|++|++++|++.+..+..+ 
T Consensus       191 ~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~  268 (520)
T 2z7x_B          191 NLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI-ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF  268 (520)
T ss_dssp             EEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE-EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCC
T ss_pred             ceeeccccccccccccceeecchh-hhccccchhhcccccc-ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchh
Confidence            88888888886       444433 6788999999999988 33211 10000  114589999999999984333344 


Q ss_pred             ----cCCCCccEEEccCCcCCCCChhhhcCC---CCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCC
Q psy16110        493 ----DELLNLKYLCLAHNHLTEIPEMMFKNL---LNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFN  565 (719)
Q Consensus       493 ----~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  565 (719)
                          ..+++|+.+++++|.+ .++...+..+   .+|++|++++|++....  .+..+++|++|++++|++++..+..+.
T Consensus       269 ~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~  345 (520)
T 2z7x_B          269 DYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG  345 (520)
T ss_dssp             CCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred             hcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc
Confidence                8899999999999999 7774444433   68999999999987653  236889999999999999875544443


Q ss_pred             CCCCCCCCCCcEEECcCCCCCC--cCcCcccCCCCccEEEcCCCCCCC-cChhhhcCCCCCCEEECCCCCCcccCcccCC
Q psy16110        566 TKSKPNTSSLEELNLNNNELTY--LFPSSFTIHSKLKTLKLAFNKFNY-FPKELILGLSYLQEIDLSNNQLKTIDDYDYG  642 (719)
Q Consensus       566 ~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~  642 (719)
                           .+++|++|++++|++++  ..|..+..+++|++|++++|++++ ++...+..+++|++|++++|++++..+..+.
T Consensus       346 -----~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  420 (520)
T 2z7x_B          346 -----HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP  420 (520)
T ss_dssp             -----CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC
T ss_pred             -----cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc
Confidence                 46999999999999997  345778999999999999999998 8877788999999999999999876654554


Q ss_pred             CCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCCccccC
Q psy16110        643 YLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHRCECA  717 (719)
Q Consensus       643 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~  717 (719)
                        ++|++|++++|+++.+++..+ .+++|++|++++|+++.+|...|..+++| ++++++|++        .|+|+
T Consensus       421 --~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~--------~c~c~  485 (520)
T 2z7x_B          421 --PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW--------DCSCP  485 (520)
T ss_dssp             --TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB--------CCCHH
T ss_pred             --ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC--------cccCC
Confidence              799999999999998777544 89999999999999999999889999999 999999999        88885

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.3e-43  Score=397.13  Aligned_cols=457  Identities=19%  Similarity=0.203  Sum_probs=291.9

Q ss_pred             ccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCc
Q psy16110        166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLL  245 (719)
Q Consensus       166 L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  245 (719)
                      .+++|+++|+++.+|..++    ++|++|+|++|.+.+     +.+.+|.++++|++|+|++|+++.+++++|.++++|+
T Consensus        33 ~~~l~ls~~~L~~ip~~~~----~~L~~L~Ls~N~i~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  103 (562)
T 3a79_B           33 ESMVDYSNRNLTHVPKDLP----PRTKALSLSQNSISE-----LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE  103 (562)
T ss_dssp             CCEEECTTSCCCSCCTTSC----TTCCEEECCSSCCCC-----CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             CcEEEcCCCCCccCCCCCC----CCcCEEECCCCCccc-----cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence            5899999999999998653    799999999999987     4456899999999999999999999988999999999


Q ss_pred             EEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccC-CCcccCCCccCEEEccCCCCcccCcccccCcccC--cEEEcC
Q psy16110        246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLK-ADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKI--HILNLG  322 (719)
Q Consensus       246 ~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L--~~L~L~  322 (719)
                      +|++++|.++++|..   .+++|++|++++|.++.++ +..|+++++|++|++++|.++...   +..+++|  ++|+++
T Consensus       104 ~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~  177 (562)
T 3a79_B          104 YLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLD  177 (562)
T ss_dssp             EEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEE
T ss_pred             EEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEee
Confidence            999999999999974   8999999999999999876 478999999999999999988643   4555555  999999


Q ss_pred             CCCC--CCcCCCccccccccCCC-CCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchh
Q psy16110        323 YNRL--NKLNSDTFQGGAFNGLA-KIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE  399 (719)
Q Consensus       323 ~n~l--~~~~~~~~~~~~l~~l~-~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~  399 (719)
                      +|.+  +...+..+.     .+. ..-.+++++|.+....          ....+..+++|+.+++++|.....      
T Consensus       178 ~n~l~~~~~~~~~l~-----~l~~~~l~l~l~~n~~~~~~----------~~~~~~~l~~L~~L~l~~n~~~~~------  236 (562)
T 3a79_B          178 LVSYHIKGGETESLQ-----IPNTTVLHLVFHPNSLFSVQ----------VNMSVNALGHLQLSNIKLNDENCQ------  236 (562)
T ss_dssp             ESSCCCCSSSCCEEE-----ECCEEEEEEEECSSSCCCCC----------CEEEESSEEEEEEEEEECCSTTHH------
T ss_pred             cccccccccCccccc-----ccCcceEEEEecCccchhhh----------hhhcccccceEEEecccccccccc------
Confidence            9988  666554332     222 1114566766653211          112234456666777666631100      


Q ss_pred             ccCCEEEccCCcccccccCccCCCCccEEEccCCCCCC-----cCcccccCCCcCcEEeCcCCCCCCCCCCCCC----CC
Q psy16110        400 DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKE-----LEPTAFTNVPTLLHLNLSRNAHLSSLPVGGF----DP  470 (719)
Q Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~----~~  470 (719)
                                 .+.+..+....++.|+.++++++.+.+     +++.  ...++|++|++++|...+.+|...|    ..
T Consensus       237 -----------~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~  303 (562)
T 3a79_B          237 -----------RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF--FWPRPVEYLNIYNLTITERIDREEFTYSETA  303 (562)
T ss_dssp             -----------HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH--HTTSSEEEEEEEEEEECSCCCCCCCCCCSCS
T ss_pred             -----------hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh--hhcccccEEEEeccEeeccccchhhhccccc
Confidence                       011111112223445555554443332     1111  1223566666666633335554433    34


Q ss_pred             CCCccEEEcCCCCCCCCCchhhcC---CCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCC
Q psy16110        471 LKKLEVLDLAATGLKSIPQYQFDE---LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK  547 (719)
Q Consensus       471 l~~L~~L~ls~n~l~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~  547 (719)
                      ++.|+.++++.+.+ .++...+..   ..+|++|++++|.+..+..  ...+++|++|++++|++++..+..+..+++|+
T Consensus       304 L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  380 (562)
T 3a79_B          304 LKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ  380 (562)
T ss_dssp             CCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCC
T ss_pred             chheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCC
Confidence            45555555555555 444222221   2467777777777655432  24567777777777777776666677777777


Q ss_pred             EEEccCCcCCcccC--CcCCCCCCCCCCCCcEEECcCCCCCC-cCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCC
Q psy16110        548 RLDLSFNKLTTFKG--DYFNTKSKPNTSSLEELNLNNNELTY-LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ  624 (719)
Q Consensus       548 ~L~L~~n~l~~~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  624 (719)
                      +|++++|++++++.  ..+     ..+++|++|++++|.+++ +.+..+..+++|++|++++|++++..+..+.  ++|+
T Consensus       381 ~L~L~~N~l~~~~~~~~~~-----~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~  453 (562)
T 3a79_B          381 TLILQRNGLKNFFKVALMT-----KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVK  453 (562)
T ss_dssp             EEECCSSCCCBTTHHHHTT-----TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCS
T ss_pred             EEECCCCCcCCcccchhhh-----cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCC
Confidence            77777777665432  112     234666666666666666 3333456666666666666666543322221  4666


Q ss_pred             EEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCC
Q psy16110        625 EIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE  682 (719)
Q Consensus       625 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  682 (719)
                      +|++++|+++.+++..+ ++++|++|++++|+++++++..|..+++|+.|++++|++.
T Consensus       454 ~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          454 VLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             EEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             EEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence            66666666665555333 5666666666666666655554566666666666666665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.1e-42  Score=395.73  Aligned_cols=516  Identities=21%  Similarity=0.250  Sum_probs=377.4

Q ss_pred             CCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccc
Q psy16110        135 LPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEF  214 (719)
Q Consensus       135 ~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  214 (719)
                      +|..+..  +.+....++.+|+..|... ++|++|||++|+|+.|++.+|. .+++|++|+|++|++++     +.+..|
T Consensus        50 lp~~~~~--LdLs~N~i~~l~~~~f~~l-~~L~~L~Ls~N~i~~i~~~~f~-~L~~L~~L~Ls~N~l~~-----l~~~~f  120 (635)
T 4g8a_A           50 LPFSTKN--LDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQS-----LALGAF  120 (635)
T ss_dssp             SCTTCCE--EECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCE-----ECGGGG
T ss_pred             CCcCCCE--EEeeCCCCCCCCHHHHhCC-CCCCEEECCCCcCCCcChhHhc-CCCCCCEEEccCCcCCC-----CCHHHh
Confidence            4555543  4445567889998888876 5899999999999999999996 67999999999999986     445789


Q ss_pred             cCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCC-CCCCCCCCCCcEEEcCCCcCcccCCCcccCCCcc-
Q psy16110        215 HGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIP-SVSLNGPRALRILSMAYNRIGTLKADSFLSQRWL-  292 (719)
Q Consensus       215 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~-~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-  292 (719)
                      .++++|++|+|++|+++.+++..|+++++|++|++++|.++.++ +..++.+++|++|++++|.++.+.+..|..+.++ 
T Consensus       121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~  200 (635)
T 4g8a_A          121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  200 (635)
T ss_dssp             TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred             cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence            99999999999999999999999999999999999999998653 3367889999999999999999988877665544 


Q ss_pred             ---CEEEccCCCCcccCcccccCcccCcEEEcCCCCCCC-cCCCccccccccCCCCCCEEeCCCCCCCccccccccCccc
Q psy16110        293 ---ERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNK-LNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHI  368 (719)
Q Consensus       293 ---~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~  368 (719)
                         ..++++.|.+..+.+..+.. ..++.+++.+|.... +...     .+..+..++...+..+.......     ...
T Consensus       201 ~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~-----~~~~l~~l~~~~l~~~~~~~~~~-----l~~  269 (635)
T 4g8a_A          201 LLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKT-----CIQGLAGLEVHRLVLGEFRNEGN-----LEK  269 (635)
T ss_dssp             TCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHH-----HHHTTTTCEEEEEEEECCTTSCC-----CSC
T ss_pred             hhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccch-----hhcCCcccccccccccccccccc-----ccc
Confidence               47899999999988876654 456788888775432 1111     34556666665554332211100     000


Q ss_pred             ccccccccCCCccEEECCCCCCcC----c-CCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccc
Q psy16110        369 TIFSFFQDFQKLKSLDLNGNFLIN----L-ESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF  443 (719)
Q Consensus       369 ~~~~~l~~~~~L~~L~L~~n~l~~----~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  443 (719)
                      .....+.....+...++..+....    . ........++.+.+.++.+..+.. ......|+.|++.+|.+.++...  
T Consensus       270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~--  346 (635)
T 4g8a_A          270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTL--  346 (635)
T ss_dssp             CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCSEEEEESCEESSCCCC--
T ss_pred             ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccchhhhhhhcccccccCcCcc--
Confidence            111223334444444443332211    1 113445677788888777766543 22356788888888877766543  


Q ss_pred             cCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCC--CchhhcCCCCccEEEccCCcCCCCChhhhcCCCC
Q psy16110        444 TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI--PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN  521 (719)
Q Consensus       444 ~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  521 (719)
                       .++.|+.+++..| .....+.  +..+++|+.+++++|.+...  .+..+..+.+|+++++..+....++. .+..+++
T Consensus       347 -~l~~L~~l~l~~n-~~~~~~~--~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~~~~l~~  421 (635)
T 4g8a_A          347 -KLKSLKRLTFTSN-KGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS-NFLGLEQ  421 (635)
T ss_dssp             -BCTTCCEEEEESC-CSCCBCC--CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS-CCTTCTT
T ss_pred             -cchhhhhcccccc-cCCCCcc--cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc-ccccccc
Confidence             4567778888877 4444332  34678888888888877643  23455567788888888887665554 3567788


Q ss_pred             CCEEeCCCCcccccc-CCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCC-CCcCcCcccCCCCc
Q psy16110        522 LTYLDLSNNNIVNLR-VGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNEL-TYLFPSSFTIHSKL  599 (719)
Q Consensus       522 L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L  599 (719)
                      |+.++++.+...... ...+..+++++.++++.|.+.......+..     ++.+++|++++|.+ .+..|..|..+++|
T Consensus       422 L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-----~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L  496 (635)
T 4g8a_A          422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-----LSSLEVLKMAGNSFQENFLPDIFTELRNL  496 (635)
T ss_dssp             CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-----CTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             ccchhhhhcccccccccccccccccccccccccccccccccccccc-----chhhhhhhhhhcccccccCchhhhhcccc
Confidence            888888887766543 356778888888888888887766655543     48888888888864 44567788888888


Q ss_pred             cEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCC-CCCcEEECCC
Q psy16110        600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNS-SQLQIINLSF  678 (719)
Q Consensus       600 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~  678 (719)
                      ++|+|++|+++++++..|.++++|++|+|++|+++++++..|.++++|++|+|++|+++++++..|..+ ++|++|+|++
T Consensus       497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence            888888888888888888888888888888888888888788888888888888888888888888777 5788888888


Q ss_pred             CcCCC
Q psy16110        679 NRLEK  683 (719)
Q Consensus       679 N~l~~  683 (719)
                      |++.+
T Consensus       577 Np~~C  581 (635)
T 4g8a_A          577 NDFAC  581 (635)
T ss_dssp             CCBCC
T ss_pred             CCCcc
Confidence            88874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.7e-42  Score=399.11  Aligned_cols=296  Identities=21%  Similarity=0.263  Sum_probs=181.3

Q ss_pred             CccEEECCCCCCcCcCC---cchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCc-CcEEeC
Q psy16110        379 KLKSLDLNGNFLINLES---TGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPT-LLHLNL  454 (719)
Q Consensus       379 ~L~~L~L~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L  454 (719)
                      +|+.|++++|.++.+|.   +..+++|+.|++++|.++.++ ....+++|+.|++++|.+..++ ..+.++++ |+.|++
T Consensus       549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp-~~l~~l~~~L~~L~L  626 (876)
T 4ecn_A          549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIP-EDFCAFTDQVEGLGF  626 (876)
T ss_dssp             TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCC-TTSCEECTTCCEEEC
T ss_pred             CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccch-HHHhhccccCCEEEC
Confidence            44444444444443333   233344444444444444333 2333555666666666555333 33555555 666666


Q ss_pred             cCCCCCCCCCCCCCCCCC--CccEEEcCCCCCCCCCchh---hc--CCCCccEEEccCCcCCCCChhhhcCCCCCCEEeC
Q psy16110        455 SRNAHLSSLPVGGFDPLK--KLEVLDLAATGLKSIPQYQ---FD--ELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDL  527 (719)
Q Consensus       455 ~~n~~l~~l~~~~~~~l~--~L~~L~ls~n~l~~~~~~~---~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  527 (719)
                      ++| .++.+|.. +..+.  +|+.|++++|.+.+..+..   +.  ..++|+.|++++|.++.++...+..+++|++|++
T Consensus       627 s~N-~L~~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~L  704 (876)
T 4ecn_A          627 SHN-KLKYIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL  704 (876)
T ss_dssp             CSS-CCCSCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEEC
T ss_pred             cCC-CCCcCchh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEEC
Confidence            666 44555532 33332  3667777777665533211   11  2347888888888888888777777888888888


Q ss_pred             CCCccccccCCccCCC-------CCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCcc
Q psy16110        528 SNNNIVNLRVGSLYGL-------PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLK  600 (719)
Q Consensus       528 s~n~i~~~~~~~l~~l-------~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  600 (719)
                      ++|+++.+.+..+...       ++|+.|+|++|+++.++...+.    ..+++|+.|+|++|.++++ |..+..+++|+
T Consensus       705 s~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~----~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~  779 (876)
T 4ecn_A          705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA----TTLPYLSNMDVSYNCFSSF-PTQPLNSSQLK  779 (876)
T ss_dssp             CSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST----TTCTTCCEEECCSSCCSSC-CCGGGGCTTCC
T ss_pred             CCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh----ccCCCcCEEEeCCCCCCcc-chhhhcCCCCC
Confidence            8888776544443322       2666666666666655433320    1246666666666666663 55566666666


Q ss_pred             EEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCc
Q psy16110        601 TLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNR  680 (719)
Q Consensus       601 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  680 (719)
                      +|+|++|+                  ++++|++.+..+..+.++++|+.|+|++|++..++.. +.  ++|+.|||++|+
T Consensus       780 ~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~-l~--~~L~~LdLs~N~  838 (876)
T 4ecn_A          780 AFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK-LT--PQLYILDIADNP  838 (876)
T ss_dssp             EEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CC--SSSCEEECCSCT
T ss_pred             EEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCCCccCHh-hc--CCCCEEECCCCC
Confidence            66666654                  4556888877777888899999999999999666554 43  689999999999


Q ss_pred             CCCcChHhhcCcccc-EEecCCCce
Q psy16110        681 LEKLPERLFNTFLYT-NYDMAPNLV  704 (719)
Q Consensus       681 l~~i~~~~~~~l~~L-~L~l~~N~l  704 (719)
                      +..+....|.....+ .+.|.+|++
T Consensus       839 l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          839 NISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             TCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             CCccChHHccccccchheeecCCCc
Confidence            988877666655566 777777776

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.6e-42  Score=394.11  Aligned_cols=440  Identities=22%  Similarity=0.287  Sum_probs=282.2

Q ss_pred             cccEEEcCCCCcc-ccCcccccchhccccEEEcCCCcCCCcCCC--------CCCcccccCCCCCCEEECcCCCCcccCc
Q psy16110        165 PIRRLDFSGNALR-RLSDKLFSPHRDTLQELRLADNLFGDSLNP--------IFSTSEFHGLVNLRILDLSDNQIKAIEE  235 (719)
Q Consensus       165 ~L~~L~Ls~n~i~-~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~--------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  235 (719)
                      +++.|+|+++.+. .+|..+  +.+++|++|+|++|.+......        .+..+ .  +..|+ +++++|.+....+
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l--~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~-~--~~~l~-l~l~~~~l~~~~~  155 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAI--GQLTELEVLALGSHGEKVNERLFGPKGISANMSDE-Q--KQKMR-MHYQKTFVDYDPR  155 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGG--GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHH-H--HHHHH-THHHHHHTCCCGG
T ss_pred             CEEEEEecCcccCCcCChHH--hcCccceEEECcCCccccCCccccccccccCchHH-H--HHHHH-hhHHHhhhccCch
Confidence            6999999999998 677654  5789999999999975211000        01011 0  23333 4444443333222


Q ss_pred             CccC-------------------CCccCcEEECC--CCcCCcCCCCCCCCCCCCcEEEcCCCcCccc-------------
Q psy16110        236 GILK-------------------GCDNLLELRMD--HNRFTSIPSVSLNGPRALRILSMAYNRIGTL-------------  281 (719)
Q Consensus       236 ~~~~-------------------~l~~L~~L~L~--~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~-------------  281 (719)
                      ..+.                   ....++.+.+.  +|+++++|. .++++++|++|++++|.+++.             
T Consensus       156 ~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  234 (636)
T 4eco_A          156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEY  234 (636)
T ss_dssp             GGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred             hhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCH-HHhcccCCCEEECcCCccccccccccccccccch
Confidence            1111                   01122222222  456666665 477777777777777777662             


Q ss_pred             ----CCCccc--CCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCC-CCC--cCCCccccc-cccCCCCCCEEeCC
Q psy16110        282 ----KADSFL--SQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR-LNK--LNSDTFQGG-AFNGLAKIHILNLG  351 (719)
Q Consensus       282 ----~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~--~~~~~~~~~-~l~~l~~L~~L~L~  351 (719)
                          .|..+.  ++++|++|++++|.+.+..|..|+++++|++|++++|+ +++  ++.. +... .+..+++|++|+++
T Consensus       235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~  313 (636)
T 4eco_A          235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIG  313 (636)
T ss_dssp             HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECC
T ss_pred             hcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECC
Confidence                355566  77777777777777777667777777777777777776 654  3321 1000 01223677777777


Q ss_pred             CCCCCccccccccCccccccc--ccccCCCccEEECCCCCCc-CcCCcchhccCCEEEccCCcccccccCccCCCC-ccE
Q psy16110        352 YNRLNKLNSDTFQGTHITIFS--FFQDFQKLKSLDLNGNFLI-NLESTGLEDTLDNLNVRDNQITTLSSSALNYKL-LTK  427 (719)
Q Consensus       352 ~n~l~~i~~~~f~~~~~~~~~--~l~~~~~L~~L~L~~n~l~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~  427 (719)
                      +|+++.+            |.  .+..+++|++|++++|.++ .++.+..+++|++|++++|.++.++..+..+++ |+.
T Consensus       314 ~n~l~~i------------p~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~  381 (636)
T 4eco_A          314 YNNLKTF------------PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN  381 (636)
T ss_dssp             SSCCSSC------------CCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCE
T ss_pred             CCcCCcc------------CchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcE
Confidence            7776533            33  4556777777777777777 666555567778888888877777666666777 888


Q ss_pred             EEccCCCCCCcCcccccCCC--cCcEEeCcCCCCCCCCCCCCCC-------CCCCccEEEcCCCCCCCCCchhhcCCCCc
Q psy16110        428 LDLSHNNLKELEPTAFTNVP--TLLHLNLSRNAHLSSLPVGGFD-------PLKKLEVLDLAATGLKSIPQYQFDELLNL  498 (719)
Q Consensus       428 L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~~l~~l~~~~~~-------~l~~L~~L~ls~n~l~~~~~~~~~~~~~L  498 (719)
                      |++++|.++.++ ..+...+  +|++|++++| .+....+..+.       .+++|+.|++++|.++.++...+..+++|
T Consensus       382 L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L  459 (636)
T 4eco_A          382 LSFAHNKLKYIP-NIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL  459 (636)
T ss_dssp             EECCSSCCSSCC-SCCCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC
T ss_pred             EEccCCcCcccc-hhhhhcccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCC
Confidence            888888887654 3444433  7888888888 44443333344       56788889999998888888777788889


Q ss_pred             cEEEccCCcCCCCChhhhcCCC-------CCCEEeCCCCccccccCCccC--CCCCCCEEEccCCcCCcccCCcCCCCCC
Q psy16110        499 KYLCLAHNHLTEIPEMMFKNLL-------NLTYLDLSNNNIVNLRVGSLY--GLPSMKRLDLSFNKLTTFKGDYFNTKSK  569 (719)
Q Consensus       499 ~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~Ls~n~i~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~  569 (719)
                      ++|++++|+++.++...+....       +|++|++++|+++.+ |..+.  .+++|++|+|++|++++++....     
T Consensus       460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-----  533 (636)
T 4eco_A          460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSKFPTQPL-----  533 (636)
T ss_dssp             SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSSCCCGGG-----
T ss_pred             CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCCCCCCcChhhh-----
Confidence            9999999988888876665443       899999999998865 55554  88888888888888887654432     


Q ss_pred             CCCCCCcEEECcC------CCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCccc
Q psy16110        570 PNTSSLEELNLNN------NELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTI  636 (719)
Q Consensus       570 ~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  636 (719)
                       .+++|++|++++      |++.+..|..+..+++|++|++++|+++.+|... .  ++|++|++++|++..+
T Consensus       534 -~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~-~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          534 -NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI-T--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             -GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC-C--TTCCEEECCSCTTCEE
T ss_pred             -cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhH-h--CcCCEEECcCCCCccc
Confidence             257888888854      4555555555555555666655555555555431 1  4555555555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.4e-42  Score=400.61  Aligned_cols=444  Identities=21%  Similarity=0.277  Sum_probs=278.3

Q ss_pred             cccEEEcCCCCcc-ccCcccccchhccccEEEc-CCCcCCCcCCCCCCccccc-CCCCCC--EE---------EC-cCCC
Q psy16110        165 PIRRLDFSGNALR-RLSDKLFSPHRDTLQELRL-ADNLFGDSLNPIFSTSEFH-GLVNLR--IL---------DL-SDNQ  229 (719)
Q Consensus       165 ~L~~L~Ls~n~i~-~l~~~~f~~~~~~L~~L~L-s~n~i~~~~~~~~~~~~~~-~l~~L~--~L---------~L-s~n~  229 (719)
                      +++.|+|++|.+. .+|+.+  +.+++|++|+| ++|.+.+..+.  ...... .+...+  .+         +. ....
T Consensus       324 ~V~~L~Ls~~~L~G~ip~~l--~~L~~L~~LdLss~N~lsG~~~~--~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~  399 (876)
T 4ecn_A          324 RVTGLSLAGFGAKGRVPDAI--GQLTELKVLSFGTHSETVSGRLF--GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN  399 (876)
T ss_dssp             CEEEEECTTTCCEEEECGGG--GGCTTCCEEESCCTTHHHHTTCB--TTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred             CEEEEECccCCCCCcCchHH--hccccceEeeecccccccccccc--cccccccccchhHHHHHHHhhhhhhhccCcchh
Confidence            5888888888887 666554  46788888888 77776654221  100000 000000  00         00 0000


Q ss_pred             Ccc-----------cCcCccCCCccCcEEECCC--CcCCcCCCCCCCCCCCCcEEEcCCCcCcc----------------
Q psy16110        230 IKA-----------IEEGILKGCDNLLELRMDH--NRFTSIPSVSLNGPRALRILSMAYNRIGT----------------  280 (719)
Q Consensus       230 l~~-----------~~~~~~~~l~~L~~L~L~~--n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~----------------  280 (719)
                      +..           ..+........++.+.+..  |+++.+|. .++++++|++|+|++|.+++                
T Consensus       400 ~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~  478 (876)
T 4ecn_A          400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK  478 (876)
T ss_dssp             SCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred             hhHHHHHHhhhCccccccccccccchhhceeccccCcccchhH-HHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence            000           0000001122333333333  56666665 46677777777777777766                


Q ss_pred             -cCCCccc--CCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCC-CCC--cCCCccccc--cccCCCCCCEEeCCC
Q psy16110        281 -LKADSFL--SQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR-LNK--LNSDTFQGG--AFNGLAKIHILNLGY  352 (719)
Q Consensus       281 -~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~--~~~~~~~~~--~l~~l~~L~~L~L~~  352 (719)
                       ..|..++  ++++|++|++++|.+.+..|..|+++++|++|++++|+ +++  ++.. +...  .+..+++|++|++++
T Consensus       479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~  557 (876)
T 4ecn_A          479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGY  557 (876)
T ss_dssp             HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCS
T ss_pred             ccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeC
Confidence             1344444  77777777777777776666777777777777777776 654  3321 1100  123445777777777


Q ss_pred             CCCCccccccccCccccccc--ccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCC-ccEEE
Q psy16110        353 NRLNKLNSDTFQGTHITIFS--FFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKL-LTKLD  429 (719)
Q Consensus       353 n~l~~i~~~~f~~~~~~~~~--~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~  429 (719)
                      |+++.+            |.  .+..+++|+.|++++|.++.+|.+..+++|+.|++++|.++.++.....+++ |+.|+
T Consensus       558 N~L~~i------------p~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~  625 (876)
T 4ecn_A          558 NNLEEF------------PASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG  625 (876)
T ss_dssp             SCCCBC------------CCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEE
T ss_pred             CcCCcc------------CChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEE
Confidence            777533            33  4566777888888888777777666667788888888888777666666777 88888


Q ss_pred             ccCCCCCCcCcccccCCC--cCcEEeCcCCCCCCCCCCC--CCC--CCCCccEEEcCCCCCCCCCchhhcCCCCccEEEc
Q psy16110        430 LSHNNLKELEPTAFTNVP--TLLHLNLSRNAHLSSLPVG--GFD--PLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCL  503 (719)
Q Consensus       430 Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~~l~~l~~~--~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L  503 (719)
                      +++|.+..++ ..+..++  +|+.|++++|...+.+|.-  .+.  .+++|+.|++++|.++.++...+..+++|+.|++
T Consensus       626 Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~L  704 (876)
T 4ecn_A          626 FSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL  704 (876)
T ss_dssp             CCSSCCCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEEC
T ss_pred             CcCCCCCcCc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEEC
Confidence            8888888654 4555554  3888888888433333311  011  3458999999999999998877888999999999


Q ss_pred             cCCcCCCCChhhhcCC-------CCCCEEeCCCCccccccCCccC--CCCCCCEEEccCCcCCcccCCcCCCCCCCCCCC
Q psy16110        504 AHNHLTEIPEMMFKNL-------LNLTYLDLSNNNIVNLRVGSLY--GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSS  574 (719)
Q Consensus       504 ~~n~l~~~~~~~~~~l-------~~L~~L~Ls~n~i~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~  574 (719)
                      ++|.++.++...+...       ++|++|++++|+++.+ |..+.  .+++|+.|+|++|++++++....      .+++
T Consensus       705 s~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~------~L~~  777 (876)
T 4ecn_A          705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYNCFSSFPTQPL------NSSQ  777 (876)
T ss_dssp             CSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSSCCSSCCCGGG------GCTT
T ss_pred             CCCcCCccChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCCCCCccchhhh------cCCC
Confidence            9999998888766543       3899999999999965 55665  89999999999999988654433      3589


Q ss_pred             CcEEECcCC------CCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccC
Q psy16110        575 LEELNLNNN------ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTID  637 (719)
Q Consensus       575 L~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  637 (719)
                      |+.|+|++|      .+.+.+|..+..+++|++|+|++|++..+|... .  ++|+.|||++|++..+.
T Consensus       778 L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l-~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL-T--PQLYILDIADNPNISID  843 (876)
T ss_dssp             CCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC-C--SSSCEEECCSCTTCEEE
T ss_pred             CCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhh-c--CCCCEEECCCCCCCccC
Confidence            999999875      444444444444555555555555444444331 1  34444444444444433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.7e-41  Score=387.40  Aligned_cols=443  Identities=18%  Similarity=0.248  Sum_probs=258.1

Q ss_pred             ccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccC-----------CCccCcEEECCCCcCCcC
Q psy16110        189 DTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILK-----------GCDNLLELRMDHNRFTSI  257 (719)
Q Consensus       189 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----------~l~~L~~L~L~~n~l~~i  257 (719)
                      .+++.|+|+++.+.|.+|     .+++++++|++|+|++|.+...+ ..++           .+..|+ ++++++.+...
T Consensus        81 ~~V~~L~L~~~~l~g~lp-----~~l~~L~~L~~L~Ls~N~~~~~~-~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~  153 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVP-----DAIGQLTELEVLALGSHGEKVNE-RLFGPKGISANMSDEQKQKMR-MHYQKTFVDYD  153 (636)
T ss_dssp             CCEEEEECTTSCCEEEEC-----GGGGGCTTCCEEESCCGGGGGTC-CSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCC
T ss_pred             CCEEEEEecCcccCCcCC-----hHHhcCccceEEECcCCccccCC-ccccccccccCchHHHHHHHH-hhHHHhhhccC
Confidence            479999999999999776     47899999999999999763211 0111           134455 56666555433


Q ss_pred             CCCCCC-------------------CCCCCcEEEcC--CCcCcccCCCcccCCCccCEEEccCCCCccc-----------
Q psy16110        258 PSVSLN-------------------GPRALRILSMA--YNRIGTLKADSFLSQRWLERIILRGNRLTTI-----------  305 (719)
Q Consensus       258 ~~~~l~-------------------~l~~L~~L~Ls--~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----------  305 (719)
                      ++..+.                   ....++.+.+.  .|+++++ |..++++++|++|++++|.+++.           
T Consensus       154 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  232 (636)
T 4eco_A          154 PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENS  232 (636)
T ss_dssp             GGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred             chhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccC-CHHHhcccCCCEEECcCCcccccccccccccccc
Confidence            322222                   11112222222  4566663 55677777777777777777763           


Q ss_pred             ------Cccccc--CcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCC-CCccccccccCccccccccccc
Q psy16110        306 ------EGGAFN--GLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNR-LNKLNSDTFQGTHITIFSFFQD  376 (719)
Q Consensus       306 ------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~i~~~~f~~~~~~~~~~l~~  376 (719)
                            .|..++  ++++|++|++++|.+.+..+.     .+.++++|++|++++|+ ++.          ..+|..+..
T Consensus       233 ~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-----~l~~l~~L~~L~Ls~n~~l~~----------~~lp~~~~~  297 (636)
T 4eco_A          233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-----FLKALPEMQLINVACNRGISG----------EQLKDDWQA  297 (636)
T ss_dssp             HHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-----TTTTCSSCCEEECTTCTTSCH----------HHHHHHHHH
T ss_pred             chhcccCchhhhhcccCCCCEEEecCCcCCccChH-----HHhcCCCCCEEECcCCCCCcc----------ccchHHHHh
Confidence                  445566  677777777777766554333     35566677777777775 531          023333333


Q ss_pred             C------CCccEEECCCCCCcCcCC---cchhccCCEEEccCCccc-ccccCccCCCCccEEEccCCCCCCcCcccccCC
Q psy16110        377 F------QKLKSLDLNGNFLINLES---TGLEDTLDNLNVRDNQIT-TLSSSALNYKLLTKLDLSHNNLKELEPTAFTNV  446 (719)
Q Consensus       377 ~------~~L~~L~L~~n~l~~~~~---~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  446 (719)
                      +      ++|++|++++|.++.+|.   +..+++|++|++++|.++ .++ ....+++|+.|++++|.+..++ ..+.++
T Consensus       298 L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp-~~l~~l  375 (636)
T 4eco_A          298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIP-ANFCGF  375 (636)
T ss_dssp             HHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECC-TTSEEE
T ss_pred             hhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccccc-Hhhhhh
Confidence            3      666666666666665554   344456666666666666 343 3333556666666666655433 335555


Q ss_pred             Cc-CcEEeCcCCCCCCCCCCCCCCCC--CCccEEEcCCCCCCCCCchhhc-------CCCCccEEEccCCcCCCCChhhh
Q psy16110        447 PT-LLHLNLSRNAHLSSLPVGGFDPL--KKLEVLDLAATGLKSIPQYQFD-------ELLNLKYLCLAHNHLTEIPEMMF  516 (719)
Q Consensus       447 ~~-L~~L~L~~n~~l~~l~~~~~~~l--~~L~~L~ls~n~l~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~  516 (719)
                      ++ |++|++++| .++.+|.. +...  ++|+.|++++|.+.+..+..+.       .+++|++|++++|.++.++...+
T Consensus       376 ~~~L~~L~Ls~N-~l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~  453 (636)
T 4eco_A          376 TEQVENLSFAHN-KLKYIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF  453 (636)
T ss_dssp             CTTCCEEECCSS-CCSSCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHH
T ss_pred             cccCcEEEccCC-cCcccchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHH
Confidence            55 666666666 44455542 2322  2566666666665554444444       44455555555555555555555


Q ss_pred             cCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCccc--
Q psy16110        517 KNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFT--  594 (719)
Q Consensus       517 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--  594 (719)
                      ..+++|++|++++|+++.+.+..+....                      ....++++|++|++++|+++.+ |..+.  
T Consensus       454 ~~l~~L~~L~Ls~N~l~~i~~~~~~~~~----------------------~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~  510 (636)
T 4eco_A          454 STGSPLSSINLMGNMLTEIPKNSLKDEN----------------------ENFKNTYLLTSIDLRFNKLTKL-SDDFRAT  510 (636)
T ss_dssp             HTTCCCSEEECCSSCCSBCCSSSSEETT----------------------EECTTGGGCCEEECCSSCCCBC-CGGGSTT
T ss_pred             ccCCCCCEEECCCCCCCCcCHHHhcccc----------------------ccccccCCccEEECcCCcCCcc-Chhhhhc
Confidence            5555555555555555543332222211                      0001122555555555555533 34443  


Q ss_pred             CCCCccEEEcCCCCCCCcChhhhcCCCCCCEEEC------CCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCC
Q psy16110        595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDL------SNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNS  668 (719)
Q Consensus       595 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L------s~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  668 (719)
                      .+++|++|++++|+++++|.. +..+++|++|++      ++|++.+..+..+.++++|++|++++|++..++.. +.  
T Consensus       511 ~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~-~~--  586 (636)
T 4eco_A          511 TLPYLVGIDLSYNSFSKFPTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK-IT--  586 (636)
T ss_dssp             TCTTCCEEECCSSCCSSCCCG-GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CC--
T ss_pred             cCCCcCEEECCCCCCCCcChh-hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh-Hh--
Confidence            555666666666665554433 445566666666      56777777777888899999999999999766654 43  


Q ss_pred             CCCcEEECCCCcCCCcC
Q psy16110        669 SQLQIINLSFNRLEKLP  685 (719)
Q Consensus       669 ~~L~~L~Ls~N~l~~i~  685 (719)
                      ++|+.|||++|++.+++
T Consensus       587 ~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          587 PNISVLDIKDNPNISID  603 (636)
T ss_dssp             TTCCEEECCSCTTCEEE
T ss_pred             CcCCEEECcCCCCcccc
Confidence            78999999999887655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.1e-41  Score=384.61  Aligned_cols=439  Identities=22%  Similarity=0.216  Sum_probs=279.3

Q ss_pred             cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110        165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL  244 (719)
Q Consensus       165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  244 (719)
                      ++++|++++|.|+.++...|. .+++|++|+|++|.+++     +.+++|.++++|++|+|++|+++.++..   .+++|
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L  123 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDIS-FLSELRVLRLSHNRIRS-----LDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASL  123 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTT-TCTTCCEEECCSCCCCE-----ECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTC
T ss_pred             CcCEEECCCCCccccChhhhc-cCCCccEEECCCCCCCc-----CCHHHhCCCCCCCEEECCCCcCCccCcc---ccccC
Confidence            599999999999999988885 67999999999999987     3446899999999999999999998875   79999


Q ss_pred             cEEECCCCcCCcCCC-CCCCCCCCCcEEEcCCCcCcccCCCcccCCCcc--CEEEccCCCC--cccCcccccCcc--cCc
Q psy16110        245 LELRMDHNRFTSIPS-VSLNGPRALRILSMAYNRIGTLKADSFLSQRWL--ERIILRGNRL--TTIEGGAFNGLA--KIH  317 (719)
Q Consensus       245 ~~L~L~~n~l~~i~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L--~~L~Ls~n~i--~~~~~~~~~~l~--~L~  317 (719)
                      ++|++++|+++.++. ..++++++|++|++++|.++...   +..+++|  ++|++++|.+  ++..+..|..+.  .+ 
T Consensus       124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-  199 (562)
T 3a79_B          124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-  199 (562)
T ss_dssp             SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-
T ss_pred             CEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceE-
Confidence            999999999998763 57999999999999999998743   4555555  9999999999  888888887654  33 


Q ss_pred             EEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcC---
Q psy16110        318 ILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLE---  394 (719)
Q Consensus       318 ~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~---  394 (719)
                      .++++.|.+......    ..+..+++|+.+++++|+...-   .+    ......+..+++|+.++++++.+....   
T Consensus       200 ~l~l~~n~~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~---~l----~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~  268 (562)
T 3a79_B          200 HLVFHPNSLFSVQVN----MSVNALGHLQLSNIKLNDENCQ---RL----MTFLSELTRGPTLLNVTLQHIETTWKCSVK  268 (562)
T ss_dssp             EEEECSSSCCCCCCE----EEESSEEEEEEEEEECCSTTHH---HH----HHHHHHHHSCSSCEEEEEEEEEECHHHHHH
T ss_pred             EEEecCccchhhhhh----hcccccceEEEecccccccccc---hH----HHHHHHHhccCcceEEEecCCcCcHHHHHH
Confidence            568888887663322    1466789999999999863110   00    112234566788888887776544321   


Q ss_pred             --CcchhccCCEEEccCCccc-ccccCc-----cCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCC
Q psy16110        395 --STGLEDTLDNLNVRDNQIT-TLSSSA-----LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVG  466 (719)
Q Consensus       395 --~~~~~~~L~~L~l~~n~l~-~~~~~~-----~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~  466 (719)
                        ......+|++|++++|.++ .++...     ..++.|+.++++.+.+ .++...+..+                    
T Consensus       269 ~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~--------------------  327 (562)
T 3a79_B          269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSV--------------------  327 (562)
T ss_dssp             HHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHH--------------------
T ss_pred             HHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhh--------------------
Confidence              1111125556666655555 333332     1233333333333333 2221111111                    


Q ss_pred             CCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccccc--CCccCCCC
Q psy16110        467 GFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLR--VGSLYGLP  544 (719)
Q Consensus       467 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~l~~l~  544 (719)
                        ....+|+.|++++|.+.....  ...+++|++|++++|.+++..+..+..+++|++|++++|+++++.  |..+..++
T Consensus       328 --~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  403 (562)
T 3a79_B          328 --FAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS  403 (562)
T ss_dssp             --HHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT
T ss_pred             --hccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC
Confidence              001234444444444433221  134455555555555555443344455555555555555555432  23455555


Q ss_pred             CCCEEEccCCcCCc-ccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCC
Q psy16110        545 SMKRLDLSFNKLTT-FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYL  623 (719)
Q Consensus       545 ~L~~L~L~~n~l~~-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  623 (719)
                      +|++|++++|++++ ++...+.     .+++|++|++++|++++..|..+.  ++|++|++++|+++.+|...+ .+++|
T Consensus       404 ~L~~L~l~~N~l~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L  475 (562)
T 3a79_B          404 SLETLDVSLNSLNSHAYDRTCA-----WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQAL  475 (562)
T ss_dssp             TCCEEECTTSCCBSCCSSCCCC-----CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCC
T ss_pred             CCCEEECCCCcCCCccChhhhc-----CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCC
Confidence            56666666655554 4333332     235666666666666555444333  566677777776666666543 66677


Q ss_pred             CEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCC
Q psy16110        624 QEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAI  660 (719)
Q Consensus       624 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  660 (719)
                      ++|++++|+++++++..+..+++|++|++++|++.+.
T Consensus       476 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          476 QELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             SEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             CEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            7777777777766665566677777777777776653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.9e-39  Score=353.68  Aligned_cols=368  Identities=26%  Similarity=0.322  Sum_probs=247.0

Q ss_pred             cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110        165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL  244 (719)
Q Consensus       165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  244 (719)
                      ++++|+|++|.|+.++...|. .+++|++|+|++|.+.+.++    +..|.++++|++|+|++|++..+.+..|.++++|
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~i~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  105 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIR----NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL  105 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTS-SCTTCCEEECCCCSTTCEEC----TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred             ccCEEEecCCccCcCChhHhc-cCccccEEECcCCcccceEC----cccccccccCCEEeCCCCccCccChhhccCcccC
Confidence            599999999999998777774 67899999999998876543    4678999999999999999999888889999999


Q ss_pred             cEEECCCCcCCc--CCCCCCCCCCCCcEEEcCCCcCcccCCCc-ccCCCccCEEEccCCCCcccCcccccCc--ccCcEE
Q psy16110        245 LELRMDHNRFTS--IPSVSLNGPRALRILSMAYNRIGTLKADS-FLSQRWLERIILRGNRLTTIEGGAFNGL--AKIHIL  319 (719)
Q Consensus       245 ~~L~L~~n~l~~--i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L  319 (719)
                      ++|++++|.+++  .+...+..+++|++|++++|.++.+.+.. +..+++|++|++++|.++++.+..+..+  .+|+.|
T Consensus       106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L  185 (455)
T 3v47_A          106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL  185 (455)
T ss_dssp             CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred             CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence            999999999986  33445888999999999999999887765 7889999999999999998888777766  678899


Q ss_pred             EcCCCCCCCcCCCccccc---cccCCCCCCEEeCCCCCCCccccccccCcccccccccc---cCCCccEEECCCCCCcCc
Q psy16110        320 NLGYNRLNKLNSDTFQGG---AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQ---DFQKLKSLDLNGNFLINL  393 (719)
Q Consensus       320 ~L~~n~l~~~~~~~~~~~---~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~---~~~~L~~L~L~~n~l~~~  393 (719)
                      ++++|.+..++...+...   .+..+++|++|++++|+++...           +..+.   ..++|+.|++++|.....
T Consensus       186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-----------~~~~~~~~~~~~L~~L~l~~~~~~~~  254 (455)
T 3v47_A          186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM-----------AKRFFDAIAGTKIQSLILSNSYNMGS  254 (455)
T ss_dssp             ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH-----------HHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred             ccccCcccccchhhccccccccccccceeeeEecCCCcccccc-----------hhhhhccccccceeeEeecccccccc
Confidence            999998888766433210   1234567788888887765322           22221   125677777776644332


Q ss_pred             CCcchhccCCEEEccCCcccccccCc---cCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCC
Q psy16110        394 ESTGLEDTLDNLNVRDNQITTLSSSA---LNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP  470 (719)
Q Consensus       394 ~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~  470 (719)
                      ..            ..+.+.......   ...++|+.|++++|.+.++.+..                         |..
T Consensus       255 ~~------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-------------------------~~~  297 (455)
T 3v47_A          255 SF------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV-------------------------FSH  297 (455)
T ss_dssp             CT------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT-------------------------TTT
T ss_pred             cc------------chhhhccCcccccccccccCceEEEecCccccccchhh-------------------------ccc
Confidence            11            001111111000   01234444555544444444444                         444


Q ss_pred             CCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEE
Q psy16110        471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLD  550 (719)
Q Consensus       471 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  550 (719)
                      +++|++|++++|.++++++..|..+++|++|++++|.++++++..|..+++|++|++++|+++++.+..+..+++|++|+
T Consensus       298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  377 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA  377 (455)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence            55555555555555555555555566666666666666666555566666666666666666666666666666666666


Q ss_pred             ccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCc
Q psy16110        551 LSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFP  590 (719)
Q Consensus       551 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  590 (719)
                      +++|++++++...+.     .+++|++|++++|++++..|
T Consensus       378 L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          378 LDTNQLKSVPDGIFD-----RLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCSSCCSCCCTTTTT-----TCTTCCEEECCSSCBCCCTT
T ss_pred             CCCCccccCCHhHhc-----cCCcccEEEccCCCcccCCC
Confidence            666666665554443     23666666666666665543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.9e-39  Score=351.98  Aligned_cols=382  Identities=24%  Similarity=0.334  Sum_probs=179.3

Q ss_pred             EEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCc-ccCcccccCcccCcEEEcCCC
Q psy16110        246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT-TIEGGAFNGLAKIHILNLGYN  324 (719)
Q Consensus       246 ~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n  324 (719)
                      .++.++++++.+|.    -.++|++|++++|.++.+.+..|.++++|++|++++|.+. .+.+.+|.++++|++|++++|
T Consensus        14 ~~~c~~~~l~~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           14 NAICINRGLHQVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             EEECCSSCCSSCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             ccCcCCCCcccCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            34455555555553    1245555555555555555555555555555555555554 333445555555555555555


Q ss_pred             CCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCE
Q psy16110        325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN  404 (719)
Q Consensus       325 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~  404 (719)
                      .++.+.+.     .+.++++|++|++++|+++....         ....+..+++|++|++++|.++.+.+...      
T Consensus        90 ~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------  149 (455)
T 3v47_A           90 QFLQLETG-----AFNGLANLEVLTLTQCNLDGAVL---------SGNFFKPLTSLEMLVLRDNNIKKIQPASF------  149 (455)
T ss_dssp             TTCEECTT-----TTTTCTTCCEEECTTSCCBTHHH---------HSSTTTTCTTCCEEECCSSBCCSCCCCGG------
T ss_pred             ccCccChh-----hccCcccCCEEeCCCCCCCcccc---------CcccccCcccCCEEECCCCccCccCcccc------
Confidence            55554333     23445555555555555432000         00112334444444444444433321100      


Q ss_pred             EEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCC--CcCcEEeCcCCCCCCCCCCCCC--------CCCCCc
Q psy16110        405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNV--PTLLHLNLSRNAHLSSLPVGGF--------DPLKKL  474 (719)
Q Consensus       405 L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~~l~~l~~~~~--------~~l~~L  474 (719)
                                    ...+++|++|++++|.+.++.+..+..+  .+|+.|++++| .+..++...+        ..+++|
T Consensus       150 --------------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~~~L  214 (455)
T 3v47_A          150 --------------FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI-TLQDMNEYWLGWEKCGNPFKNTSI  214 (455)
T ss_dssp             --------------GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC-BCTTCSTTCTTHHHHCCTTTTCEE
T ss_pred             --------------cCCCCcccEEeCCCCcccccChhhhhccccccccccccccC-cccccchhhcccccccccccccee
Confidence                          2235677778888887777766666554  56777777777 5555543321        123344


Q ss_pred             cEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCC
Q psy16110        475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN  554 (719)
Q Consensus       475 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  554 (719)
                      ++|++++|.+.+..+..+...                     ...++|+.|++++|.+.+...              ..+
T Consensus       215 ~~L~Ls~n~l~~~~~~~~~~~---------------------~~~~~L~~L~l~~~~~~~~~~--------------~~~  259 (455)
T 3v47_A          215 TTLDLSGNGFKESMAKRFFDA---------------------IAGTKIQSLILSNSYNMGSSF--------------GHT  259 (455)
T ss_dssp             EEEECTTSCCCHHHHHHHHHH---------------------TTTCCEEEEECTTCTTTSCCT--------------TCC
T ss_pred             eeEecCCCcccccchhhhhcc---------------------ccccceeeEeecccccccccc--------------chh
Confidence            444444444443322222211                     011444444444443322100              000


Q ss_pred             cCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCc
Q psy16110        555 KLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLK  634 (719)
Q Consensus       555 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  634 (719)
                      .+.......+...   ..++|++|++++|.+++..|..+..+++|++|++++|+++++++..+.++++|++|++++|.++
T Consensus       260 ~~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  336 (455)
T 3v47_A          260 NFKDPDNFTFKGL---EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG  336 (455)
T ss_dssp             SSCCCCTTTTGGG---TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             hhccCcccccccc---cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence            0110000000000   1134455555555555444444555555555555555555444444444555555555555555


Q ss_pred             ccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCce
Q psy16110        635 TIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLV  704 (719)
Q Consensus       635 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l  704 (719)
                      ++++..|.++++|++|++++|+++++++..|..+++|++|++++|+++.+|+..|.++++| +|++++|++
T Consensus       337 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence            4444444455555555555555555444444445555555555555555554444455555 555555555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.3e-38  Score=342.98  Aligned_cols=407  Identities=23%  Similarity=0.271  Sum_probs=240.0

Q ss_pred             cccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCC-cCCCCCCCCCCCC-------------cEEEcCCC
Q psy16110        211 TSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFT-SIPSVSLNGPRAL-------------RILSMAYN  276 (719)
Q Consensus       211 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~i~~~~l~~l~~L-------------~~L~Ls~n  276 (719)
                      |..+ ..++|++|++++|.+..++. .++++++|++|++++|.++ .+|. .++.+++|             ++|++++|
T Consensus         5 p~~~-~~~~L~~L~l~~n~l~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~~~l~~L~l~~~   81 (454)
T 1jl5_A            5 PRNV-SNTFLQEPLRHSSNLTEMPV-EAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLDRQAHELELNNL   81 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred             cccc-ccccchhhhcccCchhhCCh-hHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhccCCCEEEecCC
Confidence            3444 36899999999999977766 5899999999999999988 4555 68887765             88888888


Q ss_pred             cCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCC
Q psy16110        277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLN  356 (719)
Q Consensus       277 ~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~  356 (719)
                      .+++++.    -.++|++|++++|.+++++.    .+++|++|++++|.+++++..         .++|++|++++|+++
T Consensus        82 ~l~~lp~----~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~---------~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           82 GLSSLPE----LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL---------PPLLEYLGVSNNQLE  144 (454)
T ss_dssp             CCSCCCS----CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC---------CTTCCEEECCSSCCS
T ss_pred             ccccCCC----CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC---------CCCCCEEECcCCCCC
Confidence            8888754    24688888888888888653    247888888888888776531         267888888888876


Q ss_pred             ccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCC
Q psy16110        357 KLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK  436 (719)
Q Consensus       357 ~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~  436 (719)
                      .++             .+..+++|++|++++|.++.++..  ..+|++|++++|.+++++ ....+++|+.|++++|.++
T Consensus       145 ~lp-------------~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          145 KLP-------------ELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             SCC-------------CCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred             CCc-------------ccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC
Confidence            543             255678888888888888876642  247888888888888765 3555788888888888887


Q ss_pred             CcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhh
Q psy16110        437 ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMF  516 (719)
Q Consensus       437 ~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  516 (719)
                      +++..    .++|++|++++| .++.+|.  +..+++|++|++++|++++++.    ..++|++|++++|++++++..  
T Consensus       209 ~l~~~----~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~--  275 (454)
T 1jl5_A          209 KLPDL----PLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPEL--  275 (454)
T ss_dssp             SCCCC----CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCC--
T ss_pred             cCCCC----cCcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcc--
Confidence            76431    257888888888 6667773  6778888888888888877664    246788888888887776642  


Q ss_pred             cCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCC
Q psy16110        517 KNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIH  596 (719)
Q Consensus       517 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  596 (719)
                        .++|++|++++|+++++..    ..++|++|++++|++++++..         .++|++|++++|+++++ |..   +
T Consensus       276 --~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i~~~---------~~~L~~L~Ls~N~l~~l-p~~---~  336 (454)
T 1jl5_A          276 --PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSLCDL---------PPSLEELNVSNNKLIEL-PAL---P  336 (454)
T ss_dssp             --CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEECCC---------CTTCCEEECCSSCCSCC-CCC---C
T ss_pred             --cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcccCC---------cCcCCEEECCCCccccc-ccc---C
Confidence              3678888888888777421    125778888888877754310         14678888888887774 332   4


Q ss_pred             CCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccC--cccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEE
Q psy16110        597 SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTID--DYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQII  674 (719)
Q Consensus       597 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  674 (719)
                      ++|++|++++|+++.+|.    .+++|++|++++|++++++  +..+      ..|  +.|.+.+..+.   .+++|++|
T Consensus       337 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l------~~L--~~n~~~~~i~~---~~~~L~~L  401 (454)
T 1jl5_A          337 PRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESV------EDL--RMNSHLAEVPE---LPQNLKQL  401 (454)
T ss_dssp             TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTC------CEE--ECCC------------------
T ss_pred             CcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHH------Hhh--hhccccccccc---ccCcCCEE
Confidence            778888888888777765    3577888888888777743  2222      222  22333333332   13678888


Q ss_pred             ECCCCcCCCcChHhhcCcccc-EEecCCCce
Q psy16110        675 NLSFNRLEKLPERLFNTFLYT-NYDMAPNLV  704 (719)
Q Consensus       675 ~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l  704 (719)
                      |+++|+++.+|.  +  -..+ .+.+++|.+
T Consensus       402 ~ls~N~l~~~~~--i--P~sl~~L~~~~~~~  428 (454)
T 1jl5_A          402 HVETNPLREFPD--I--PESVEDLRMNSERV  428 (454)
T ss_dssp             -------------------------------
T ss_pred             ECCCCcCCcccc--c--hhhHhheeCcCccc
Confidence            888888875431  1  0245 666667665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.7e-37  Score=339.00  Aligned_cols=407  Identities=22%  Similarity=0.281  Sum_probs=203.8

Q ss_pred             CcccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCC-------------CEEECcCCCC
Q psy16110        164 IPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNL-------------RILDLSDNQI  230 (719)
Q Consensus       164 ~~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L-------------~~L~Ls~n~l  230 (719)
                      .++++|++++|.+..+|..+  +.+++|++|++++|.+.+.+|.     .++++++|             ++|++++|.+
T Consensus        11 ~~L~~L~l~~n~l~~iP~~i--~~L~~L~~L~l~~n~~~~~~p~-----~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l   83 (454)
T 1jl5_A           11 TFLQEPLRHSSNLTEMPVEA--ENVKSKTEYYNAWSEWERNAPP-----GNGEQREMAVSRLRDCLDRQAHELELNNLGL   83 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCT-----TSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred             ccchhhhcccCchhhCChhH--hcccchhhhhccCCcccccCCc-----ccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence            36999999999999999876  5788999999999998877664     56666654             7777777777


Q ss_pred             cccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccc
Q psy16110        231 KAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAF  310 (719)
Q Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~  310 (719)
                      +.++..    .++|++|++++|.++++|.    .+++|++|++++|.+++++..    .++|++|++++|.+++++  +|
T Consensus        84 ~~lp~~----~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp--~~  149 (454)
T 1jl5_A           84 SSLPEL----PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP--EL  149 (454)
T ss_dssp             SCCCSC----CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC--CC
T ss_pred             ccCCCC----cCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc--cc
Confidence            766541    3567777777777777664    236677777777777665321    256777777777777654  36


Q ss_pred             cCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCC
Q psy16110        311 NGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFL  390 (719)
Q Consensus       311 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l  390 (719)
                      +++++|++|++++|++++++..         ..+|++|++++|+++.++             .+..+++|++|++++|.+
T Consensus       150 ~~l~~L~~L~l~~N~l~~lp~~---------~~~L~~L~L~~n~l~~l~-------------~~~~l~~L~~L~l~~N~l  207 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLKKLPDL---------PPSLEFIAAGNNQLEELP-------------ELQNLPFLTAIYADNNSL  207 (454)
T ss_dssp             TTCTTCCEEECCSSCCSCCCCC---------CTTCCEEECCSSCCSSCC-------------CCTTCTTCCEEECCSSCC
T ss_pred             CCCCCCCEEECCCCcCcccCCC---------cccccEEECcCCcCCcCc-------------cccCCCCCCEEECCCCcC
Confidence            7777777777777776665431         236667777766665432             134456666666666665


Q ss_pred             cCcCCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCC
Q psy16110        391 INLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP  470 (719)
Q Consensus       391 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~  470 (719)
                      ++++..                         .++|+.|++++|.+..++  .+..+++|++|++++| .+..+|..    
T Consensus       208 ~~l~~~-------------------------~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N-~l~~l~~~----  255 (454)
T 1jl5_A          208 KKLPDL-------------------------PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNN-LLKTLPDL----  255 (454)
T ss_dssp             SSCCCC-------------------------CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSS-CCSSCCSC----
T ss_pred             CcCCCC-------------------------cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCC-cCCccccc----
Confidence            554431                         124555555555555443  2455555555555555 44444431    


Q ss_pred             CCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEE
Q psy16110        471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLD  550 (719)
Q Consensus       471 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  550 (719)
                      +++|+.|++++|.+++++..    .++|++|++++|.+++++..    .++|++|++++|+++++..    ..++|++|+
T Consensus       256 ~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l~~~----~~~L~~L~l~~N~l~~i~~----~~~~L~~L~  323 (454)
T 1jl5_A          256 PPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGLSEL----PPNLYYLNASSNEIRSLCD----LPPSLEELN  323 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSEESCC----CTTCCEEECCSSCCSEECC----CCTTCCEEE
T ss_pred             ccccCEEECCCCcccccCcc----cCcCCEEECcCCccCcccCc----CCcCCEEECcCCcCCcccC----CcCcCCEEE
Confidence            24566666666666555431    25666666666666654321    2567777777776665421    114677777


Q ss_pred             ccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCC
Q psy16110        551 LSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSN  630 (719)
Q Consensus       551 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  630 (719)
                      +++|++++++..         +++|++|++++|+++++ |.   .+++|++|++++|++++++.-    ...+..|.  .
T Consensus       324 Ls~N~l~~lp~~---------~~~L~~L~L~~N~l~~l-p~---~l~~L~~L~L~~N~l~~l~~i----p~~l~~L~--~  384 (454)
T 1jl5_A          324 VSNNKLIELPAL---------PPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPLREFPDI----PESVEDLR--M  384 (454)
T ss_dssp             CCSSCCSCCCCC---------CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCCC----CTTCCEEE--C
T ss_pred             CCCCcccccccc---------CCcCCEEECCCCccccc-cc---hhhhccEEECCCCCCCcCCCC----hHHHHhhh--h
Confidence            777777654432         26677777777777764 33   357777777777777764320    12333333  2


Q ss_pred             CCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110        631 NQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK  683 (719)
Q Consensus       631 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  683 (719)
                      |.+.+..+.   .+++|++|++++|++++++.  +  .++++.|++.+|.+..
T Consensus       385 n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~--i--P~sl~~L~~~~~~~~~  430 (454)
T 1jl5_A          385 NSHLAEVPE---LPQNLKQLHVETNPLREFPD--I--PESVEDLRMNSERVVD  430 (454)
T ss_dssp             CC---------------------------------------------------
T ss_pred             ccccccccc---ccCcCCEEECCCCcCCcccc--c--hhhHhheeCcCcccCC
Confidence            444433221   24678888888888776432  1  1466777777776653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.1e-37  Score=341.30  Aligned_cols=323  Identities=24%  Similarity=0.365  Sum_probs=279.3

Q ss_pred             ccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCcc-CCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCC
Q psy16110        380 LKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA  458 (719)
Q Consensus       380 L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  458 (719)
                      -+.++.+++.++.+|. ...+.++.|++++|.++++++..+ .+++|++|++++|.+.++.+..|.++++|++|++++| 
T Consensus        13 ~~~v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-   90 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-   90 (477)
T ss_dssp             TTEEECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred             CCEEEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-
Confidence            3567777777777765 344678888888888888866544 4888999999999998888888889999999999998 


Q ss_pred             CCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCC
Q psy16110        459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVG  538 (719)
Q Consensus       459 ~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~  538 (719)
                      .++.++...|..+++|++|++++|.+..+.+..|..+++|++|++++|.++.+....|..+++|++|++++|+++++.+.
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            78888888888899999999999999888888888899999999999998888887888899999999999998888777


Q ss_pred             ccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhc
Q psy16110        539 SLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL  618 (719)
Q Consensus       539 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  618 (719)
                      .+..+++|+.|++++|.+..++...+.     .+++|++|++++|...+..+.......+|++|++++|+++.++...+.
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  245 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFK-----RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR  245 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSC-----SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcc-----cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence            788899999999999998877665554     458899999999887776666666667999999999999999988899


Q ss_pred             CCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EE
Q psy16110        619 GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NY  697 (719)
Q Consensus       619 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L  697 (719)
                      .+++|+.|+|++|.++++++..|.++++|++|+|++|+++++.+..|..+++|++|+|++|+++.+++..|..+++| .|
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  325 (477)
T 2id5_A          246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL  325 (477)
T ss_dssp             TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred             CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence            99999999999999999988889999999999999999999988889999999999999999999999999999999 99


Q ss_pred             ecCCCceeeeccCCCccccC
Q psy16110        698 DMAPNLVFQSHLSGHRCECA  717 (719)
Q Consensus       698 ~l~~N~l~~~~~~~~~C~c~  717 (719)
                      ++++|++        .|+|.
T Consensus       326 ~l~~N~l--------~c~c~  337 (477)
T 2id5_A          326 ILDSNPL--------ACDCR  337 (477)
T ss_dssp             ECCSSCE--------ECSGG
T ss_pred             EccCCCc--------cCccc
Confidence            9999999        67775

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-36  Score=334.47  Aligned_cols=333  Identities=27%  Similarity=0.396  Sum_probs=207.8

Q ss_pred             CCCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcc
Q psy16110        103 DFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDK  182 (719)
Q Consensus       103 ~~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~  182 (719)
                      .||..|+|...   ...++|.+..++     .+|.+                   ++    .++++|+|++|+|+.++..
T Consensus         2 ~Cp~~C~C~~~---~~~v~c~~~~l~-----~ip~~-------------------~~----~~l~~L~L~~n~l~~~~~~   50 (477)
T 2id5_A            2 GCPPRCECSAQ---DRAVLCHRKRFV-----AVPEG-------------------IP----TETRLLDLGKNRIKTLNQD   50 (477)
T ss_dssp             CCSTTCEEETT---TTEEECCSCCCS-----SCCSC-------------------CC----TTCSEEECCSSCCCEECTT
T ss_pred             cccCCCeECCC---CCEEEeCCCCcC-----cCCCC-------------------CC----CCCcEEECCCCccceECHh
Confidence            46779999732   357888876554     33332                   22    2588999999998888766


Q ss_pred             cccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCC
Q psy16110        183 LFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL  262 (719)
Q Consensus       183 ~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l  262 (719)
                      .|. .+++|++|+|++|.+.+.     .+.+|.++++|++|+|++|+++.+++..|.++++|++|++++|.++.+++..+
T Consensus        51 ~~~-~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~  124 (477)
T 2id5_A           51 EFA-SFPHLEELELNENIVSAV-----EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF  124 (477)
T ss_dssp             TTT-TCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             Hcc-CCCCCCEEECCCCccCEe-----ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHc
Confidence            664 456666666666666542     23456666666666666666666666556666666666666666665555556


Q ss_pred             CCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCC
Q psy16110        263 NGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL  342 (719)
Q Consensus       263 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l  342 (719)
                      ..+++|++|++++|.++.+.+..|..+++|++|++++|.++++.+..|..+++|+.|++++|.+..++..     .+..+
T Consensus       125 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-----~~~~l  199 (477)
T 2id5_A          125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-----SFKRL  199 (477)
T ss_dssp             TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT-----CSCSC
T ss_pred             cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh-----hcccC
Confidence            6666666666666666655555555666666666666665555555555555555555555555444332     22333


Q ss_pred             CCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCC
Q psy16110        343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNY  422 (719)
Q Consensus       343 ~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  422 (719)
                      +                                   +|+.|++++|....                     .+++..+..
T Consensus       200 ~-----------------------------------~L~~L~l~~~~~~~---------------------~~~~~~~~~  223 (477)
T 2id5_A          200 Y-----------------------------------RLKVLEISHWPYLD---------------------TMTPNCLYG  223 (477)
T ss_dssp             T-----------------------------------TCCEEEEECCTTCC---------------------EECTTTTTT
T ss_pred             c-----------------------------------ccceeeCCCCcccc---------------------ccCcccccC
Confidence            4                                   44444444432211                     111222233


Q ss_pred             CCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEE
Q psy16110        423 KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLC  502 (719)
Q Consensus       423 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~  502 (719)
                      .+|+.|++++|.+++++...+..+++|+.|++++| .++.++...|..+++|+.|++++|+++.+.+..|..+++|++|+
T Consensus       224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  302 (477)
T 2id5_A          224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN  302 (477)
T ss_dssp             CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred             ccccEEECcCCcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence            45667777777777666666677777777777777 56666666677777777777777777777666777777777777


Q ss_pred             ccCCcCCCCChhhhcCCCCCCEEeCCCCcccc
Q psy16110        503 LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN  534 (719)
Q Consensus       503 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~  534 (719)
                      +++|+++.++...|..+++|++|++++|++..
T Consensus       303 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          303 VSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             CCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            77777777777777777777777777777653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.1e-35  Score=323.79  Aligned_cols=343  Identities=22%  Similarity=0.379  Sum_probs=210.7

Q ss_pred             cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110        165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL  244 (719)
Q Consensus       165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  244 (719)
                      +++.|+++++.++.+|.  + ..+++|++|+|++|.+.+.     .  .+.++++|++|++++|++..+++  +.++++|
T Consensus        47 ~l~~L~l~~~~i~~l~~--~-~~l~~L~~L~Ls~n~l~~~-----~--~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L  114 (466)
T 1o6v_A           47 QVTTLQADRLGIKSIDG--V-EYLNNLTQINFSNNQLTDI-----T--PLKNLTKLVDILMNNNQIADITP--LANLTNL  114 (466)
T ss_dssp             TCCEEECCSSCCCCCTT--G-GGCTTCCEEECCSSCCCCC-----G--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred             cccEEecCCCCCccCcc--h-hhhcCCCEEECCCCccCCc-----h--hhhccccCCEEECCCCccccChh--hcCCCCC
Confidence            48888888888887774  3 3567888888888877652     1  26778888888888888777765  7778888


Q ss_pred             cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCC
Q psy16110        245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN  324 (719)
Q Consensus       245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  324 (719)
                      ++|++++|.++.+++  +..+++|++|++++|.++.+.  .+..+++|++|+++ |.+.++.  .+.++++|++|++++|
T Consensus       115 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN  187 (466)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred             CEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence            888888888877764  677788888888888777654  36777778888775 3444443  2677777777777777


Q ss_pred             CCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCE
Q psy16110        325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN  404 (719)
Q Consensus       325 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~  404 (719)
                      .++.++       .+..+++|++|++++|.++.+..             +..+++|++|++++|.+++++....+++|+.
T Consensus       188 ~l~~~~-------~l~~l~~L~~L~l~~n~l~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~  247 (466)
T 1o6v_A          188 KVSDIS-------VLAKLTNLESLIATNNQISDITP-------------LGILTNLDELSLNGNQLKDIGTLASLTNLTD  247 (466)
T ss_dssp             CCCCCG-------GGGGCTTCSEEECCSSCCCCCGG-------------GGGCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             cCCCCh-------hhccCCCCCEEEecCCccccccc-------------ccccCCCCEEECCCCCcccchhhhcCCCCCE
Confidence            776653       25566777777777776654321             3346667777777776666555445555666


Q ss_pred             EEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCC
Q psy16110        405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL  484 (719)
Q Consensus       405 L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l  484 (719)
                      |++++|.+++.++ ...+++|+.|++++|.+.++++  +..+++|+.|++++| .+..++.  +..+++|+.|++++|.+
T Consensus       248 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~L~~n~l  321 (466)
T 1o6v_A          248 LDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN-QLEDISP--ISNLKNLTYLTLYFNNI  321 (466)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS-CCSCCGG--GGGCTTCSEEECCSSCC
T ss_pred             EECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCC-cccCchh--hcCCCCCCEEECcCCcC
Confidence            6666665555443 3335555555555555555433  445555555555555 3444333  34455555555555555


Q ss_pred             CCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCc
Q psy16110        485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT  558 (719)
Q Consensus       485 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  558 (719)
                      +++++  +..+++|++|++++|.+++++  .+..+++|++|++++|++++..|  +..+++|+.|++++|+++.
T Consensus       322 ~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          322 SDISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             SCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCchh--hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            54443  344455555555555554442  24445555555555555544433  4444555555555554443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.9e-35  Score=325.62  Aligned_cols=302  Identities=27%  Similarity=0.430  Sum_probs=182.8

Q ss_pred             hhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCC
Q psy16110        187 HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPR  266 (719)
Q Consensus       187 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~  266 (719)
                      .++++++|+++++.+.. +|      .+..+++|++|+|++|.++.+++  +.++++|++|++++|.++.+++  +.+++
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~------~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~  112 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-ID------GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLT  112 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CT------TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCT
T ss_pred             HhccccEEecCCCCCcc-Cc------chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCC
Confidence            45788999998888764 22      46778888999999888888776  7888888888888888888775  78888


Q ss_pred             CCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCC
Q psy16110        267 ALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIH  346 (719)
Q Consensus       267 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~  346 (719)
                      +|++|++++|.++.+.+  +..+++|++|++++|.+.++.  .+..+++|++|+++ |.+..+.       .+..+++|+
T Consensus       113 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~-------~~~~l~~L~  180 (466)
T 1o6v_A          113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK-------PLANLTTLE  180 (466)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG-------GGTTCTTCC
T ss_pred             CCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch-------hhccCCCCC
Confidence            88888888888887754  778888888888888877754  47778888888875 3443332       255666777


Q ss_pred             EEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCcc
Q psy16110        347 ILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLT  426 (719)
Q Consensus       347 ~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~  426 (719)
                      +|++++|.++.++             .+..+++|++|++++|.+.+.++.+.                       +++|+
T Consensus       181 ~L~l~~n~l~~~~-------------~l~~l~~L~~L~l~~n~l~~~~~~~~-----------------------l~~L~  224 (466)
T 1o6v_A          181 RLDISSNKVSDIS-------------VLAKLTNLESLIATNNQISDITPLGI-----------------------LTNLD  224 (466)
T ss_dssp             EEECCSSCCCCCG-------------GGGGCTTCSEEECCSSCCCCCGGGGG-----------------------CTTCC
T ss_pred             EEECcCCcCCCCh-------------hhccCCCCCEEEecCCcccccccccc-----------------------cCCCC
Confidence            7777776654331             13345555555555555544433322                       34444


Q ss_pred             EEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCC
Q psy16110        427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN  506 (719)
Q Consensus       427 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n  506 (719)
                      .|++++|.+.++.  .+..+++|+.|++++| .+..++.  +..+++|+.|++++|.++.+++  +..+++|++|++++|
T Consensus       225 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n  297 (466)
T 1o6v_A          225 ELSLNGNQLKDIG--TLASLTNLTDLDLANN-QISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN  297 (466)
T ss_dssp             EEECCSSCCCCCG--GGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             EEECCCCCcccch--hhhcCCCCCEEECCCC-ccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCC
Confidence            4444444444431  2344445555555554 3333332  3444445555555554444433  444555555555555


Q ss_pred             cCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCc
Q psy16110        507 HLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT  558 (719)
Q Consensus       507 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  558 (719)
                      +++++++  +..+++|++|++++|++++..+  +..+++|++|++++|++++
T Consensus       298 ~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          298 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             CCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             cccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence            5544433  3444555555555555444432  3344444444444444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-35  Score=324.83  Aligned_cols=355  Identities=26%  Similarity=0.285  Sum_probs=236.1

Q ss_pred             cccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCC
Q psy16110        211 TSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQR  290 (719)
Q Consensus       211 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  290 (719)
                      +..++++++|++|++++|.+++++  .+..+++|++|++++|.+++++   ++.+++|++|++++|.+++++   ++.++
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~  106 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLT  106 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCT
T ss_pred             ccChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCC
Confidence            346788999999999999999885  4888999999999999999985   788999999999999998873   88899


Q ss_pred             ccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCC-CCccccccccCcccc
Q psy16110        291 WLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNR-LNKLNSDTFQGTHIT  369 (719)
Q Consensus       291 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~i~~~~f~~~~~~  369 (719)
                      +|++|++++|.+++++   ++.+++|++|++++|++++++        +..+++|++|++++|+ +..+           
T Consensus       107 ~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~--------l~~l~~L~~L~l~~n~~~~~~-----------  164 (457)
T 3bz5_A          107 KLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID--------VSHNTQLTELDCHLNKKITKL-----------  164 (457)
T ss_dssp             TCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC--------CTTCTTCCEEECTTCSCCCCC-----------
T ss_pred             cCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec--------cccCCcCCEEECCCCCccccc-----------
Confidence            9999999999998873   788999999999999988863        4567889999998884 3222           


Q ss_pred             cccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcC
Q psy16110        370 IFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTL  449 (719)
Q Consensus       370 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  449 (719)
                         .+..+++|++|++++|.++.++ ...+++|+.|++++|.+++++  ...+++|+.|++++|++++++   +..+++|
T Consensus       165 ---~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L  235 (457)
T 3bz5_A          165 ---DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID---VTPLTQL  235 (457)
T ss_dssp             ---CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTC
T ss_pred             ---ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC---ccccCCC
Confidence               2445677888888888777765 444556666666666666552  334566666666666666543   4555566


Q ss_pred             cEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCC-CCChhhhcCCCCCCEEeCC
Q psy16110        450 LHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT-EIPEMMFKNLLNLTYLDLS  528 (719)
Q Consensus       450 ~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls  528 (719)
                      +.|++++| .++.++   +..+++|+.|+++.|              +|+.|++++|.+. .++   +..+++|++|+++
T Consensus       236 ~~L~l~~N-~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls  294 (457)
T 3bz5_A          236 TYFDCSVN-PLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ---AEGCRKIKELDVT  294 (457)
T ss_dssp             SEEECCSS-CCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE---CTTCTTCCCCCCT
T ss_pred             CEEEeeCC-cCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc---ccccccCCEEECC
Confidence            66666665 444444   233445555555443              2333444444322 111   2345556666666


Q ss_pred             CCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCC
Q psy16110        529 NNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNK  608 (719)
Q Consensus       529 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  608 (719)
                      +|+..+..|.   ..++|+.|+++                  .+++|++|++++|+++++ +  +..+++|++|++++|+
T Consensus       295 ~n~~l~~l~~---~~~~L~~L~l~------------------~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          295 HNTQLYLLDC---QAAGITELDLS------------------QNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             TCTTCCEEEC---TTCCCSCCCCT------------------TCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSC
T ss_pred             CCcccceecc---CCCcceEechh------------------hcccCCEEECCCCccccc-c--cccCCcCcEEECCCCC
Confidence            5554433332   22333333332                  235677777777777764 2  6667777777777777


Q ss_pred             CCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110        609 FNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE  662 (719)
Q Consensus       609 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~  662 (719)
                      ++++        +.|+.|++++|.+.+.+     .+..|+.+++++|++++.+|
T Consensus       351 l~~l--------~~L~~L~l~~n~l~g~~-----~~~~l~~l~l~~N~l~g~ip  391 (457)
T 3bz5_A          351 IQDF--------SSVGKIPALNNNFEAEG-----QTITMPKETLTNNSLTIAVS  391 (457)
T ss_dssp             CCBC--------TTGGGSSGGGTSEEEEE-----EEEECCCBCCBTTBEEEECC
T ss_pred             CCCc--------cccccccccCCcEEecc-----eeeecCccccccCcEEEEcC
Confidence            6653        34455566667666552     33456667777777776443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.7e-35  Score=319.28  Aligned_cols=365  Identities=22%  Similarity=0.253  Sum_probs=290.6

Q ss_pred             chhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCC
Q psy16110        186 PHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGP  265 (719)
Q Consensus       186 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l  265 (719)
                      +.+++|++|++++|.+++. |      .+..+++|++|++++|+++.++   ++++++|++|++++|.++.++   ++++
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~-~------~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l  105 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDM-T------GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPL  105 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCC-T------TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTC
T ss_pred             hHcCCCCEEEccCCCcccC-h------hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCC
Confidence            4678999999999999862 2      5889999999999999999974   788999999999999999985   7899


Q ss_pred             CCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCC-CCCcCCCccccccccCCCC
Q psy16110        266 RALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR-LNKLNSDTFQGGAFNGLAK  344 (719)
Q Consensus       266 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~l~~  344 (719)
                      ++|++|++++|.++.++   +..+++|++|++++|.+++++   ++.+++|++|++++|. +..+        .+..+++
T Consensus       106 ~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--------~~~~l~~  171 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--------DVTPQTQ  171 (457)
T ss_dssp             TTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--------CCTTCTT
T ss_pred             CcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--------ccccCCc
Confidence            99999999999999873   889999999999999999873   7889999999999994 4443        2567899


Q ss_pred             CCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCC
Q psy16110        345 IHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKL  424 (719)
Q Consensus       345 L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  424 (719)
                      |++|++++|+++.++              +..+++|+.|++++|.++.++ +..+++|++|++++|++++++  ...+++
T Consensus       172 L~~L~ls~n~l~~l~--------------l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip--~~~l~~  234 (457)
T 3bz5_A          172 LTTLDCSFNKITELD--------------VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID--VTPLTQ  234 (457)
T ss_dssp             CCEEECCSSCCCCCC--------------CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred             CCEEECCCCccceec--------------cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccC--ccccCC
Confidence            999999999987653              446789999999999999884 666789999999999999976  556899


Q ss_pred             ccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEcc
Q psy16110        425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLA  504 (719)
Q Consensus       425 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~  504 (719)
                      |+.|++++|++++++   ++.+++|+.|++++|               +|+.|++++|...+..+  ++.+++|+.|+++
T Consensus       235 L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls  294 (457)
T 3bz5_A          235 LTYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVT  294 (457)
T ss_dssp             CSEEECCSSCCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCT
T ss_pred             CCEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECC
Confidence            999999999999986   456788999998776               45677788886544322  4678899999999


Q ss_pred             CCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCC
Q psy16110        505 HNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNE  584 (719)
Q Consensus       505 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  584 (719)
                      +|...+..+   ...++|+.|++++|             ++|++|++++|++++++        +..+++|++|++++|+
T Consensus       295 ~n~~l~~l~---~~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l~--------l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          295 HNTQLYLLD---CQAAGITELDLSQN-------------PKLVYLYLNNTELTELD--------VSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             TCTTCCEEE---CTTCCCSCCCCTTC-------------TTCCEEECTTCCCSCCC--------CTTCTTCSEEECCSSC
T ss_pred             CCcccceec---cCCCcceEechhhc-------------ccCCEEECCCCcccccc--------cccCCcCcEEECCCCC
Confidence            996433221   13355666655544             68999999999998752        2356899999999999


Q ss_pred             CCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCc-ccCCCCCCCCEEe
Q psy16110        585 LTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD-YDYGYLPRLRKLN  651 (719)
Q Consensus       585 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~  651 (719)
                      ++++        +.|..|.+++|.+.+.+     .+..|+.+++++|++++..| ..+....++....
T Consensus       351 l~~l--------~~L~~L~l~~n~l~g~~-----~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~  405 (457)
T 3bz5_A          351 IQDF--------SSVGKIPALNNNFEAEG-----QTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE  405 (457)
T ss_dssp             CCBC--------TTGGGSSGGGTSEEEEE-----EEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEE
T ss_pred             CCCc--------cccccccccCCcEEecc-----eeeecCccccccCcEEEEcChhHhcccCceeecc
Confidence            8873        46677788888887652     34578889999999996544 3333334444433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.4e-34  Score=307.30  Aligned_cols=306  Identities=25%  Similarity=0.310  Sum_probs=231.2

Q ss_pred             CCCccEEECCCCCCcCcCC--cchhccCCEEEccCCcccccccCcc-CCCCccEEEccCCCCCCcCcccccCCCcCcEEe
Q psy16110        377 FQKLKSLDLNGNFLINLES--TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLN  453 (719)
Q Consensus       377 ~~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  453 (719)
                      +++++.|+++++.++.++.  +..+++|++|++++|.++.+++..+ .+++|++|++++|.+.++++..|.++++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            4566666666666666665  3344667777777777766665443 377888888888888888777788888888888


Q ss_pred             CcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccc
Q psy16110        454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV  533 (719)
Q Consensus       454 L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~  533 (719)
                      +++| .++.+|...|..+++|++|++++|.+..+++..+..+++|++|++++|.++.++   +..+++|++|++++|.++
T Consensus       124 L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          124 LERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             CCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccc
Confidence            8888 777888777778888888888888888887777888888888888888887765   345678888888888776


Q ss_pred             cccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcC
Q psy16110        534 NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFP  613 (719)
Q Consensus       534 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  613 (719)
                      ++.     ..++|++|++++|.+..++...        .++|++|++++|.+++.  ..+..+++|++|++++|++++++
T Consensus       200 ~~~-----~~~~L~~L~l~~n~l~~~~~~~--------~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~  264 (390)
T 3o6n_A          200 TLA-----IPIAVEELDASHNSINVVRGPV--------NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM  264 (390)
T ss_dssp             EEE-----CCSSCSEEECCSSCCCEEECCC--------CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred             ccC-----CCCcceEEECCCCeeeeccccc--------cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC
Confidence            642     2357888888888887765433        26788888888888775  46778888888888888888877


Q ss_pred             hhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcc
Q psy16110        614 KELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL  693 (719)
Q Consensus       614 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~  693 (719)
                      +..+..+++|++|++++|++++++. .+..+++|++|++++|+++++++. +..+++|++|++++|+++.++   +..++
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~~~~  339 (390)
T 3o6n_A          265 YHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHH  339 (390)
T ss_dssp             SGGGTTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTC
T ss_pred             hhHccccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC---chhhc
Confidence            7778888888888888888887765 456778888888888888876553 566788888888888888776   56777


Q ss_pred             cc-EEecCCCceee
Q psy16110        694 YT-NYDMAPNLVFQ  706 (719)
Q Consensus       694 ~L-~L~l~~N~l~~  706 (719)
                      .| +|++++|++..
T Consensus       340 ~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          340 TLKNLTLSHNDWDC  353 (390)
T ss_dssp             CCSEEECCSSCEEH
T ss_pred             cCCEEEcCCCCccc
Confidence            88 88888888843

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.8e-33  Score=302.61  Aligned_cols=308  Identities=24%  Similarity=0.340  Sum_probs=193.5

Q ss_pred             cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110        165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL  244 (719)
Q Consensus       165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  244 (719)
                      +++.|++++|.++.+|..+|. .+++|++|+|++|.+.+     +.+.+|.++++|++|+|++|.+..+++..|+++++|
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~-~l~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLD-SFRQVELLNLNDLQIEE-----IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHH-HCCCCSEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CceEEEecCCchhhCChhHhc-ccccCcEEECCCCcccc-----cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            589999999999999887774 56778888888887765     233467777777788887777777777777777777


Q ss_pred             cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCC
Q psy16110        245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN  324 (719)
Q Consensus       245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  324 (719)
                      ++|++++|.++.+|...+.++++|++|++++|.++.+.+..|..+++|++|++++|.++++.   +..+++|++|++++|
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN  196 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSS
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccc
Confidence            77777777777777766677777777777777777776666777777777777777766553   344556666666666


Q ss_pred             CCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCE
Q psy16110        325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN  404 (719)
Q Consensus       325 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~  404 (719)
                      .++.++          ..++|++|++++|.++.++..              ..++                      |+.
T Consensus       197 ~l~~~~----------~~~~L~~L~l~~n~l~~~~~~--------------~~~~----------------------L~~  230 (390)
T 3o6n_A          197 LLSTLA----------IPIAVEELDASHNSINVVRGP--------------VNVE----------------------LTI  230 (390)
T ss_dssp             CCSEEE----------CCSSCSEEECCSSCCCEEECC--------------CCSS----------------------CCE
T ss_pred             cccccC----------CCCcceEEECCCCeeeecccc--------------cccc----------------------ccE
Confidence            655432          124555666665555433211              0123                      444


Q ss_pred             EEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCC
Q psy16110        405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL  484 (719)
Q Consensus       405 L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l  484 (719)
                      |++++|.+++. +....+++|+.|++++|.+.++.+..|..+++|++|++++| .++.++.. +..+++|++|++++|.+
T Consensus       231 L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~l~~L~~L~L~~n~l  307 (390)
T 3o6n_A          231 LKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLY-GQPIPTLKVLDLSHNHL  307 (390)
T ss_dssp             EECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECS-SSCCTTCCEEECCSSCC
T ss_pred             EECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcc-cCCCCCCCEEECCCCcc
Confidence            44444444333 12233556666666666666665566666666666666666 55555432 34456666666666666


Q ss_pred             CCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccc
Q psy16110        485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN  534 (719)
Q Consensus       485 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~  534 (719)
                      +.++. .+..+++|++|++++|.++.++   +..+++|++|++++|++..
T Consensus       308 ~~~~~-~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          308 LHVER-NQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CCCGG-GHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred             eecCc-cccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence            65543 2445556666666666665554   3445566666666665554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.1e-33  Score=294.13  Aligned_cols=304  Identities=24%  Similarity=0.350  Sum_probs=220.1

Q ss_pred             cCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCc
Q psy16110        376 DFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLS  455 (719)
Q Consensus       376 ~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  455 (719)
                      .+++|++|+++++.+..++.+..+++|++|++++|.++++++ ...+++|++|++++|.+++++  .+.++++|++|+++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLN  118 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECT
T ss_pred             hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECc
Confidence            455666666666666666655556666677776666666654 444677777777777776653  46677777777777


Q ss_pred             CCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccc
Q psy16110        456 RNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNL  535 (719)
Q Consensus       456 ~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~  535 (719)
                      +| .+..++.  +..+++|+.|++++|....... .+..+++|++|++++|.+..++.  +..+++|++|++++|++.++
T Consensus       119 ~n-~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~  192 (347)
T 4fmz_A          119 ED-NISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI  192 (347)
T ss_dssp             TS-CCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred             CC-cccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence            77 5666654  5667777777777774333332 36677778888888877776665  66777888888888877766


Q ss_pred             cCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChh
Q psy16110        536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE  615 (719)
Q Consensus       536 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  615 (719)
                      .+  +..+++|+.|++++|.+++++.  +     ..+++|++|++++|.+++..+  +..+++|++|++++|.++.++  
T Consensus       193 ~~--~~~l~~L~~L~l~~n~l~~~~~--~-----~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--  259 (347)
T 4fmz_A          193 SP--LASLTSLHYFTAYVNQITDITP--V-----ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--  259 (347)
T ss_dssp             GG--GGGCTTCCEEECCSSCCCCCGG--G-----GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--
T ss_pred             cc--ccCCCccceeecccCCCCCCch--h-----hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--
Confidence            43  6677788888888887776544  2     234788888888888877644  778888888888888888763  


Q ss_pred             hhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc
Q psy16110        616 LILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT  695 (719)
Q Consensus       616 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L  695 (719)
                      .+..+++|++|++++|++++++  .+..+++|++|++++|++++..+..|..+++|++|++++|+++.+++  +..+++|
T Consensus       260 ~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  335 (347)
T 4fmz_A          260 AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM  335 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred             hHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence            4678888888888888888773  47778888888888888888887778888888888888888888776  6788888


Q ss_pred             -EEecCCCcee
Q psy16110        696 -NYDMAPNLVF  705 (719)
Q Consensus       696 -~L~l~~N~l~  705 (719)
                       ++++++|++.
T Consensus       336 ~~L~l~~N~i~  346 (347)
T 4fmz_A          336 DSADFANQVIK  346 (347)
T ss_dssp             SEESSSCC---
T ss_pred             ceeehhhhccc
Confidence             8888888874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.7e-32  Score=290.20  Aligned_cols=304  Identities=22%  Similarity=0.360  Sum_probs=171.0

Q ss_pred             hhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCC
Q psy16110        187 HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPR  266 (719)
Q Consensus       187 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~  266 (719)
                      .+++|++|+++++.+..     +  ..+..+++|++|++++|+++.+++  +.++++|++|++++|.++.++  ++..++
T Consensus        42 ~l~~L~~L~l~~~~i~~-----~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~  110 (347)
T 4fmz_A           42 ELESITKLVVAGEKVAS-----I--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLT  110 (347)
T ss_dssp             HHTTCSEEECCSSCCCC-----C--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCT
T ss_pred             hcccccEEEEeCCcccc-----c--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCC
Confidence            45677777777777654     1  236667777777777777777665  677777777777777777765  366777


Q ss_pred             CCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCC
Q psy16110        267 ALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIH  346 (719)
Q Consensus       267 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~  346 (719)
                      +|++|++++|.++.+.+  +..+++|++|++++|......+ .+..+++|++|++++|.+..++.       +..+++|+
T Consensus       111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-------~~~l~~L~  180 (347)
T 4fmz_A          111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-------IANLTDLY  180 (347)
T ss_dssp             TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-------GGGCTTCS
T ss_pred             cCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-------hccCCCCC
Confidence            77777777777766644  6666777777777664433322 25666666666666666655432       34455555


Q ss_pred             EEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCcc
Q psy16110        347 ILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLT  426 (719)
Q Consensus       347 ~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~  426 (719)
                      +|++++|.++.++.             +..+++|+.+++++|.++..+...                       .+++|+
T Consensus       181 ~L~l~~n~l~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~-----------------------~~~~L~  224 (347)
T 4fmz_A          181 SLSLNYNQIEDISP-------------LASLTSLHYFTAYVNQITDITPVA-----------------------NMTRLN  224 (347)
T ss_dssp             EEECTTSCCCCCGG-------------GGGCTTCCEEECCSSCCCCCGGGG-----------------------GCTTCC
T ss_pred             EEEccCCccccccc-------------ccCCCccceeecccCCCCCCchhh-----------------------cCCcCC
Confidence            66665555543221             223444444444444444333322                       244455


Q ss_pred             EEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCC
Q psy16110        427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN  506 (719)
Q Consensus       427 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n  506 (719)
                      +|++++|.++++++  +..+++|++|++++| .++.++  .+..+++|+.|++++|.++.++  .+..+++|++|++++|
T Consensus       225 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          225 SLKIGNNKITDLSP--LANLSQLTWLEIGTN-QISDIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSS
T ss_pred             EEEccCCccCCCcc--hhcCCCCCEEECCCC-ccCCCh--hHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCC
Confidence            55555555554433  445555555555555 344332  2444555555555555555542  3445555555555555


Q ss_pred             cCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcC
Q psy16110        507 HLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKL  556 (719)
Q Consensus       507 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l  556 (719)
                      .++..+...+..+++|++|++++|++++..+  +..+++|++|++++|++
T Consensus       298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            5555555555555555555555555555433  44555555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=7.3e-33  Score=314.24  Aligned_cols=305  Identities=25%  Similarity=0.305  Sum_probs=244.4

Q ss_pred             CCCccEEECCCCCCcCcCC--cchhccCCEEEccCCcccccccCcc-CCCCccEEEccCCCCCCcCcccccCCCcCcEEe
Q psy16110        377 FQKLKSLDLNGNFLINLES--TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLN  453 (719)
Q Consensus       377 ~~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  453 (719)
                      +.+++.+++++|.+..+|+  +..++.|++|++++|.++++++..+ .+++|+.|++++|.++++++..|+++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            4566777777777766665  3345677777777777777766444 488888888888888888888888888888888


Q ss_pred             CcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccc
Q psy16110        454 LSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV  533 (719)
Q Consensus       454 L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~  533 (719)
                      +++| .++.+|...|..+++|++|++++|.++++++..|..+++|++|++++|.++.++.   ..+++|+.|++++|.++
T Consensus       130 L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          130 LERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL---SLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG---GGCTTCSEEECCSSCCS
T ss_pred             eeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh---hhhhhhhhhhcccCccc
Confidence            8888 7888888878888888999999888888888788888889999999888887763   45688889999888877


Q ss_pred             cccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcC
Q psy16110        534 NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFP  613 (719)
Q Consensus       534 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  613 (719)
                      ++.     ..++|+.|++++|.++.+++...        ++|+.|++++|.+++.  ..+..+++|++|++++|.+++++
T Consensus       206 ~l~-----~~~~L~~L~ls~n~l~~~~~~~~--------~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~  270 (597)
T 3oja_B          206 TLA-----IPIAVEELDASHNSINVVRGPVN--------VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM  270 (597)
T ss_dssp             EEE-----CCTTCSEEECCSSCCCEEECSCC--------SCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred             ccc-----CCchhheeeccCCcccccccccC--------CCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCC
Confidence            642     34578899999998887765432        6788999999988874  56888889999999999988887


Q ss_pred             hhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcc
Q psy16110        614 KELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL  693 (719)
Q Consensus       614 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~  693 (719)
                      +..+..+++|+.|+|++|.+++++. .+..+++|+.|+|++|+++++++. +..+++|++|+|++|+++.++   +..++
T Consensus       271 ~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~~-~~~l~~L~~L~L~~N~l~~~~---~~~~~  345 (597)
T 3oja_B          271 YHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHH  345 (597)
T ss_dssp             SGGGTTCSSCCEEECTTSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTC
T ss_pred             HHHhcCccCCCEEECCCCCCCCCCc-ccccCCCCcEEECCCCCCCccCcc-cccCCCCCEEECCCCCCCCcC---hhhcC
Confidence            7778888999999999999888765 456788999999999998876653 567889999999999988886   56778


Q ss_pred             cc-EEecCCCcee
Q psy16110        694 YT-NYDMAPNLVF  705 (719)
Q Consensus       694 ~L-~L~l~~N~l~  705 (719)
                      .| .|++++|++.
T Consensus       346 ~L~~L~l~~N~~~  358 (597)
T 3oja_B          346 TLKNLTLSHNDWD  358 (597)
T ss_dssp             CCSEEECCSSCEE
T ss_pred             CCCEEEeeCCCCC
Confidence            88 9999999984

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=5.3e-32  Score=284.10  Aligned_cols=288  Identities=24%  Similarity=0.339  Sum_probs=236.3

Q ss_pred             cCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcC
Q psy16110        401 TLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA  480 (719)
Q Consensus       401 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls  480 (719)
                      .++.++++++.++.++...  .+.++.|++++|.++++++..|.++++|++|++++| .++.+.+..|..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECC
Confidence            4566666666666555332  356778888888888877777788888888888888 6777766667788888888888


Q ss_pred             CCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccc--ccCCccCCCCCCCEEEccCCcCCc
Q psy16110        481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN--LRVGSLYGLPSMKRLDLSFNKLTT  558 (719)
Q Consensus       481 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~  558 (719)
                      +|.++.++...+   ++|++|++++|.++.++...|..+++|++|++++|.+..  ..+..+.++++|++|++++|.++.
T Consensus       109 ~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            888887776443   688999999999998888888889999999999998864  667788889999999999999987


Q ss_pred             ccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCc
Q psy16110        559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD  638 (719)
Q Consensus       559 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  638 (719)
                      ++...+        ++|++|++++|.+++..+..+..+++|++|++++|+++++++..+..+++|++|++++|+++.++.
T Consensus       186 l~~~~~--------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~  257 (330)
T 1xku_A          186 IPQGLP--------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG  257 (330)
T ss_dssp             CCSSCC--------TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred             CCcccc--------ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh
Confidence            765432        689999999999999988899999999999999999999988888999999999999999997766


Q ss_pred             ccCCCCCCCCEEeCCCCcCCCCCcccCCC------CCCCcEEECCCCcCC--CcChHhhcCcccc-EEecCCCc
Q psy16110        639 YDYGYLPRLRKLNLNNNNIDAISETCFFN------SSQLQIINLSFNRLE--KLPERLFNTFLYT-NYDMAPNL  703 (719)
Q Consensus       639 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~--~i~~~~~~~l~~L-~L~l~~N~  703 (719)
                       .+..+++|++|++++|+++++++..|..      .++|+.|++++|++.  .+++..|..+..+ .+++++|+
T Consensus       258 -~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          258 -GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             -TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             -hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence             6888999999999999999998877753      378999999999987  4788889999999 99999985

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.4e-32  Score=308.78  Aligned_cols=308  Identities=24%  Similarity=0.343  Sum_probs=201.1

Q ss_pred             cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110        165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL  244 (719)
Q Consensus       165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  244 (719)
                      +++.|++++|.++.+|..+|. .+++|++|+|++|.+.+.     .+..|+++++|++|+|++|.+..+++..|+++++|
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~-~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLD-SFRQVELLNLNDLQIEEI-----DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHH-HCCCCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CceEEEeeCCCCCCcCHHHHc-cCCCCcEEECCCCCCCCC-----ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            588999999999999887774 567788888888877753     23467777888888888887777777777777777


Q ss_pred             cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCC
Q psy16110        245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN  324 (719)
Q Consensus       245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  324 (719)
                      ++|+|++|.++.+|+..|+++++|++|++++|.++.+.+..|..+++|++|++++|.++++.   ++.+++|+.|++++|
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN  202 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC
Confidence            77777777777777766677777777777777777777666777777777777777776654   344556666666666


Q ss_pred             CCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCE
Q psy16110        325 RLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDN  404 (719)
Q Consensus       325 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~  404 (719)
                      .++.++          ...+|+.|++++|.++.++..                                    ..++|+.
T Consensus       203 ~l~~l~----------~~~~L~~L~ls~n~l~~~~~~------------------------------------~~~~L~~  236 (597)
T 3oja_B          203 LLSTLA----------IPIAVEELDASHNSINVVRGP------------------------------------VNVELTI  236 (597)
T ss_dssp             CCSEEE----------CCTTCSEEECCSSCCCEEECS------------------------------------CCSCCCE
T ss_pred             cccccc----------CCchhheeeccCCcccccccc------------------------------------cCCCCCE
Confidence            655432          234556666666655433211                                    1123444


Q ss_pred             EEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCC
Q psy16110        405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL  484 (719)
Q Consensus       405 L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l  484 (719)
                      |++++|.+++. +....+++|+.|++++|.+.++.+..|..+++|+.|++++| .+..+|.. +..+++|+.|++++|.+
T Consensus       237 L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~-~~~l~~L~~L~Ls~N~l  313 (597)
T 3oja_B          237 LKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLY-GQPIPTLKVLDLSHNHL  313 (597)
T ss_dssp             EECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECS-SSCCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcc-cccCCCCcEEECCCCCC
Confidence            44444444432 22334566777777777777666666667777777777776 55555433 34566666666666666


Q ss_pred             CCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccc
Q psy16110        485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN  534 (719)
Q Consensus       485 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~  534 (719)
                      ..++. .+..+++|++|++++|.++.++   +..+++|++|++++|++..
T Consensus       314 ~~i~~-~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          314 LHVER-NQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             CCCGG-GHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred             CccCc-ccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence            66554 3455666666666666666654   3445666666666666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=3.8e-32  Score=285.43  Aligned_cols=287  Identities=25%  Similarity=0.328  Sum_probs=219.8

Q ss_pred             cCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcC
Q psy16110        401 TLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA  480 (719)
Q Consensus       401 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls  480 (719)
                      .++.++++++.++.++...  .++|+.|++++|.+.++++..|.++++|++|++++| .++.+++..|..+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence            3555555555555554332  246666777777776666666677777777777777 5666655556677777777777


Q ss_pred             CCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccc--ccCCccCCCCCCCEEEccCCcCCc
Q psy16110        481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN--LRVGSLYGLPSMKRLDLSFNKLTT  558 (719)
Q Consensus       481 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~  558 (719)
                      +|.++.++...+   ++|++|++++|.++.++...|..+++|++|++++|.++.  ..+..+..+ +|++|++++|+++.
T Consensus       111 ~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            777776665433   678888888888888877777888888888888888864  556777777 88899999998887


Q ss_pred             ccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCc
Q psy16110        559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD  638 (719)
Q Consensus       559 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  638 (719)
                      ++...+        ++|++|++++|.+++..+..+..+++|++|++++|+++++++..+..+++|++|++++|+++.++.
T Consensus       187 l~~~~~--------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~  258 (332)
T 2ft3_A          187 IPKDLP--------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA  258 (332)
T ss_dssp             CCSSSC--------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT
T ss_pred             cCcccc--------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh
Confidence            765432        678899999999998888889999999999999999999888788889999999999999987766


Q ss_pred             ccCCCCCCCCEEeCCCCcCCCCCcccCCC------CCCCcEEECCCCcCC--CcChHhhcCcccc-EEecCCCc
Q psy16110        639 YDYGYLPRLRKLNLNNNNIDAISETCFFN------SSQLQIINLSFNRLE--KLPERLFNTFLYT-NYDMAPNL  703 (719)
Q Consensus       639 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~--~i~~~~~~~l~~L-~L~l~~N~  703 (719)
                       .+..+++|++|++++|+++++++..|..      .++|+.|++++|+++  .+++..|..++.| .+++++|+
T Consensus       259 -~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          259 -GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             -TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             -hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence             5788899999999999999888777754      367899999999888  7888889999999 99999885

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=1.3e-30  Score=273.49  Aligned_cols=288  Identities=24%  Similarity=0.344  Sum_probs=248.1

Q ss_pred             CccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCcc-CCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCC
Q psy16110        379 KLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN  457 (719)
Q Consensus       379 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  457 (719)
                      +++.++++++.++.+|. ...+.++.|++++|.++++++..+ .+++|++|++++|.++++.+..|.++++|++|++++|
T Consensus        32 ~l~~l~~~~~~l~~lp~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             ETTEEECTTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCeEEEecCCCccccCc-cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            67788888887777764 234688899999999888877544 4899999999999999998889999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCC--CChhhhcCCCCCCEEeCCCCccccc
Q psy16110        458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE--IPEMMFKNLLNLTYLDLSNNNIVNL  535 (719)
Q Consensus       458 ~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~~  535 (719)
                       .++.+|...+   ++|++|++++|.++.++...+.++++|++|++++|.+..  +....+..+++|++|++++|.++.+
T Consensus       111 -~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          111 -QLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             -CCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             -cCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence             7888887654   799999999999999999899999999999999999864  5666789999999999999999886


Q ss_pred             cCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChh
Q psy16110        536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE  615 (719)
Q Consensus       536 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  615 (719)
                      ... +  .++|++|++++|+++++.+..+.     .+++|++|++++|.+++..+..+..+++|++|++++|+++.+|..
T Consensus       187 ~~~-~--~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~  258 (330)
T 1xku_A          187 PQG-L--PPSLTELHLDGNKITKVDAASLK-----GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG  258 (330)
T ss_dssp             CSS-C--CTTCSEEECTTSCCCEECTGGGT-----TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT
T ss_pred             Ccc-c--cccCCEEECCCCcCCccCHHHhc-----CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh
Confidence            443 3  28999999999999988766665     359999999999999999888999999999999999999988865


Q ss_pred             hhcCCCCCCEEECCCCCCcccCcccCCC------CCCCCEEeCCCCcCCC--CCcccCCCCCCCcEEECCCCc
Q psy16110        616 LILGLSYLQEIDLSNNQLKTIDDYDYGY------LPRLRKLNLNNNNIDA--ISETCFFNSSQLQIINLSFNR  680 (719)
Q Consensus       616 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~  680 (719)
                       +..+++|++|++++|+++++++..|..      .+.|+.|++++|++..  +.+..|..+++++.++|++|+
T Consensus       259 -l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          259 -LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             -TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             -hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence             788999999999999999998877754      3789999999999975  677889999999999999985

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.4e-30  Score=273.39  Aligned_cols=287  Identities=21%  Similarity=0.327  Sum_probs=243.6

Q ss_pred             CccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCcc-CCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCC
Q psy16110        379 KLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN  457 (719)
Q Consensus       379 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  457 (719)
                      +++.++++++.++.+|.. ..+.++.|++++|.++++++..+ .+++|++|++++|.++++.+..|.++++|++|++++|
T Consensus        34 ~l~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             ETTEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             cCCEEECCCCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            577777777777776642 23678888888888888866444 5899999999999999998889999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCC--CChhhhcCCCCCCEEeCCCCccccc
Q psy16110        458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE--IPEMMFKNLLNLTYLDLSNNNIVNL  535 (719)
Q Consensus       458 ~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~~  535 (719)
                       .++.+|...+   ++|++|++++|.++.++...|..+++|++|++++|.++.  +....+..+ +|++|++++|+++++
T Consensus       113 -~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l  187 (332)
T 2ft3_A          113 -HLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI  187 (332)
T ss_dssp             -CCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred             -cCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence             7888887654   799999999999999998889999999999999999864  556667777 999999999999986


Q ss_pred             cCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChh
Q psy16110        536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE  615 (719)
Q Consensus       536 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  615 (719)
                      .. .+.  ++|++|++++|.+++++...+.     .+++|++|++++|.+++..+..+..+++|++|++++|+++.+|..
T Consensus       188 ~~-~~~--~~L~~L~l~~n~i~~~~~~~l~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~  259 (332)
T 2ft3_A          188 PK-DLP--ETLNELHLDHNKIQAIELEDLL-----RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG  259 (332)
T ss_dssp             CS-SSC--SSCSCCBCCSSCCCCCCTTSST-----TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred             Cc-ccc--CCCCEEECCCCcCCccCHHHhc-----CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence            44 332  7899999999999988766654     459999999999999999888999999999999999999998875


Q ss_pred             hhcCCCCCCEEECCCCCCcccCcccCCCC------CCCCEEeCCCCcCC--CCCcccCCCCCCCcEEECCCCc
Q psy16110        616 LILGLSYLQEIDLSNNQLKTIDDYDYGYL------PRLRKLNLNNNNID--AISETCFFNSSQLQIINLSFNR  680 (719)
Q Consensus       616 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l------~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~  680 (719)
                       +..+++|++|++++|+++++++..|...      +.|+.|++++|++.  ++.+..|..+++|+.+++++|+
T Consensus       260 -l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          260 -LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             -GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             -hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence             7889999999999999999988777653      67999999999998  6788889999999999999985

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=275.90  Aligned_cols=251  Identities=29%  Similarity=0.409  Sum_probs=204.4

Q ss_pred             CcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCC
Q psy16110        449 LLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLS  528 (719)
Q Consensus       449 L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  528 (719)
                      ...++.++. .++.+|...   .++++.|++++|+++.++...|.++++|++|++++|.++.++...|..+++|++|+++
T Consensus        45 ~~~v~c~~~-~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRK-NLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSC-CCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCC-CcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            345555555 566666543   2567777777777777777777777778888888877777777777777888888888


Q ss_pred             CCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcC-CCCCCcCcCcccCCCCccEEEcCCC
Q psy16110        529 NNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN-NELTYLFPSSFTIHSKLKTLKLAFN  607 (719)
Q Consensus       529 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n  607 (719)
                      +|+++.+.+..|..+++|++|+|++|+++.++...|.     .+++|++|++++ +.+..+.+..|..+++|++|++++|
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-----~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN-----RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT-----TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhh-----hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence            8887777777777888888888888887777665554     347888888887 4556666667888999999999999


Q ss_pred             CCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChH
Q psy16110        608 KFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPER  687 (719)
Q Consensus       608 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~  687 (719)
                      +++.++.  +..+++|++|+|++|+++++.+..|.++++|+.|++++|+++++.+..|..+++|++|+|++|+++.+++.
T Consensus       196 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  273 (440)
T 3zyj_A          196 NLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD  273 (440)
T ss_dssp             CCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred             cCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence            9998874  78889999999999999999888999999999999999999999988899999999999999999999999


Q ss_pred             hhcCcccc-EEecCCCceeeeccCCCccccCC
Q psy16110        688 LFNTFLYT-NYDMAPNLVFQSHLSGHRCECAQ  718 (719)
Q Consensus       688 ~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~~  718 (719)
                      .|..+++| .|+|++||+        .|+|+.
T Consensus       274 ~~~~l~~L~~L~L~~Np~--------~CdC~l  297 (440)
T 3zyj_A          274 LFTPLHHLERIHLHHNPW--------NCNCDI  297 (440)
T ss_dssp             TTSSCTTCCEEECCSSCE--------ECSSTT
T ss_pred             HhccccCCCEEEcCCCCc--------cCCCCc
Confidence            99999999 999999999        899963

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=3e-29  Score=274.85  Aligned_cols=250  Identities=26%  Similarity=0.389  Sum_probs=198.2

Q ss_pred             cEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCC
Q psy16110        450 LHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN  529 (719)
Q Consensus       450 ~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  529 (719)
                      ..++.++. .++.+|...   .++++.|++++|+++.+++..|.++++|++|++++|.++.++...|..+++|++|++++
T Consensus        57 ~~v~c~~~-~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           57 SKVVCTRR-GLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             CEEECCSS-CCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cEEEECCC-CcCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            44555555 556666432   25677777777777777766777777777777777777777777777777788888888


Q ss_pred             CccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcC-CCCCCcCcCcccCCCCccEEEcCCCC
Q psy16110        530 NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN-NELTYLFPSSFTIHSKLKTLKLAFNK  608 (719)
Q Consensus       530 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~  608 (719)
                      |+++.+.+..|..+++|++|+|++|+++.++...|.     .+++|++|++++ +.+..+.+..|..+++|++|++++|+
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN-----RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTT-----TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHh-----cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence            777777777777778888888888877776665554     347888888887 45566656678888888888888888


Q ss_pred             CCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHh
Q psy16110        609 FNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERL  688 (719)
Q Consensus       609 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~  688 (719)
                      ++.++.  +..+++|++|++++|.++++.+..|.++++|++|++++|+++++.+..|..+++|+.|+|++|+++.+++..
T Consensus       208 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  285 (452)
T 3zyi_A          208 IKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL  285 (452)
T ss_dssp             CSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred             cccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence            888764  678889999999999999888888999999999999999999988888888999999999999999999888


Q ss_pred             hcCcccc-EEecCCCceeeeccCCCccccCC
Q psy16110        689 FNTFLYT-NYDMAPNLVFQSHLSGHRCECAQ  718 (719)
Q Consensus       689 ~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~~  718 (719)
                      |..+++| .|+|++||+        .|+|+.
T Consensus       286 ~~~l~~L~~L~L~~Np~--------~CdC~~  308 (452)
T 3zyi_A          286 FTPLRYLVELHLHHNPW--------NCDCDI  308 (452)
T ss_dssp             STTCTTCCEEECCSSCE--------ECSTTT
T ss_pred             hccccCCCEEEccCCCc--------CCCCCc
Confidence            8999999 999999999        898873

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=4.1e-30  Score=272.34  Aligned_cols=279  Identities=20%  Similarity=0.268  Sum_probs=220.0

Q ss_pred             CCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEE
Q psy16110        422 YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYL  501 (719)
Q Consensus       422 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L  501 (719)
                      ++.....+.+++.++.++....   ++|++|++++| .++.++...|..+++|++|++++|.++++++..|.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCccccccccc---ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            4445556777777777754322   46777788777 6777777667778888888888888888777778888888888


Q ss_pred             EccCCcCCCCChhhhcCCCCCCEEeCCCCccccccC-CccCCCCCCCEEEccCC-cCCcccCCcCCCCCCCCCCCCcEEE
Q psy16110        502 CLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRV-GSLYGLPSMKRLDLSFN-KLTTFKGDYFNTKSKPNTSSLEELN  579 (719)
Q Consensus       502 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~l~~L~~L~  579 (719)
                      ++++|+++.++...|..+++|++|++++|+++.+.+ ..+..+++|++|++++| .++.++...+.     .+++|++|+
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----~l~~L~~L~  180 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-----GLTFLEELE  180 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-----TCCEEEEEE
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc-----CCCCCCEEE
Confidence            888888888888778888888888888888887755 57888888888888888 46666555553     358899999


Q ss_pred             CcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCC---CCCCCCEEeCCCCc
Q psy16110        580 LNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYG---YLPRLRKLNLNNNN  656 (719)
Q Consensus       580 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~Ls~N~  656 (719)
                      +++|.+++..|..+..+++|++|++++|+++.++...+..+++|++|++++|.+++.+...+.   ..+.++.++++++.
T Consensus       181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~  260 (353)
T 2z80_A          181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK  260 (353)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred             CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc
Confidence            999999888888899999999999999999888877777788999999999998876554332   35678888888888


Q ss_pred             CCCC----CcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCCccccC
Q psy16110        657 IDAI----SETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHRCECA  717 (719)
Q Consensus       657 l~~~----~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~  717 (719)
                      +++.    .+..+..+++|++|++++|+++.+|..+|.++++| +|++++|++        .|+|.
T Consensus       261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~--------~~~~~  318 (353)
T 2z80_A          261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW--------DCSCP  318 (353)
T ss_dssp             CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB--------CCCHH
T ss_pred             ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc--------cCcCC
Confidence            7763    34457788999999999999999999888899999 999999998        77774

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=5.5e-33  Score=305.95  Aligned_cols=393  Identities=19%  Similarity=0.137  Sum_probs=208.1

Q ss_pred             CCCcEEEcCCCcCcccCCCc-ccCCCccCEEEccCCCCcccC----cccccCcccCcEEEcCCCCCCCcCCCcccccccc
Q psy16110        266 RALRILSMAYNRIGTLKADS-FLSQRWLERIILRGNRLTTIE----GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFN  340 (719)
Q Consensus       266 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  340 (719)
                      ++|++|++++|.++...... +..+++|++|++++|.++...    +.++..+++|++|++++|.++......+.. .+.
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ-GLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH-TTC
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH-HHh
Confidence            34566666666665543322 556666777777777666432    344556677777777777665433222111 011


Q ss_pred             CC-CCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCc
Q psy16110        341 GL-AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA  419 (719)
Q Consensus       341 ~l-~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  419 (719)
                      .. ++|++|++++|+++..+.       ..++..+..+++|++|++++|.+++........                 ..
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~-------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-----------------~l  137 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGC-------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE-----------------GL  137 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGH-------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH-----------------HH
T ss_pred             hCCCceeEEEccCCCCCHHHH-------HHHHHHHccCCceeEEECCCCcCchHHHHHHHH-----------------HH
Confidence            11 157777777776653221       123455566677777777777655432211000                 00


Q ss_pred             c-CCCCccEEEccCCCCCCcC----cccccCCCcCcEEeCcCCCCCCCCCCCCC-----CCCCCccEEEcCCCCCCCCC-
Q psy16110        420 L-NYKLLTKLDLSHNNLKELE----PTAFTNVPTLLHLNLSRNAHLSSLPVGGF-----DPLKKLEVLDLAATGLKSIP-  488 (719)
Q Consensus       420 ~-~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~~l~~l~~~~~-----~~l~~L~~L~ls~n~l~~~~-  488 (719)
                      . ..++|++|++++|.+++..    +..+..+++|++|++++| .++......+     ...++|++|++++|.++... 
T Consensus       138 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  216 (461)
T 1z7x_W          138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC  216 (461)
T ss_dssp             TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred             hcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence            0 1223444444444444322    223334455555555555 2322111111     12345666666666665532 


Q ss_pred             ---chhhcCCCCccEEEccCCcCCCCC-----hhhhcCCCCCCEEeCCCCccccc----cCCccCCCCCCCEEEccCCcC
Q psy16110        489 ---QYQFDELLNLKYLCLAHNHLTEIP-----EMMFKNLLNLTYLDLSNNNIVNL----RVGSLYGLPSMKRLDLSFNKL  556 (719)
Q Consensus       489 ---~~~~~~~~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~l  556 (719)
                         +..+..+++|++|++++|.++...     ...+..+++|++|++++|.+++.    .+..+..+++|++|++++|.+
T Consensus       217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence               234455667777777777665432     22223466777777777776653    234455567777777777766


Q ss_pred             CcccCCcCCCCCCCCCCCCcEEECcCCCCCCc----CcCcccCCCCccEEEcCCCCCCCcChhhhcC-----CCCCCEEE
Q psy16110        557 TTFKGDYFNTKSKPNTSSLEELNLNNNELTYL----FPSSFTIHSKLKTLKLAFNKFNYFPKELILG-----LSYLQEID  627 (719)
Q Consensus       557 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~  627 (719)
                      ++.....+........++|++|++++|.+++.    ++..+..+++|++|++++|+++......+..     .++|++|+
T Consensus       297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  376 (461)
T 1z7x_W          297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW  376 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence            54322221111001125677777777777654    2444556677777777777776544333321     56777777


Q ss_pred             CCCCCCcc----cCcccCCCCCCCCEEeCCCCcCCCCCccc----C-CCCCCCcEEECCCCcCCCc
Q psy16110        628 LSNNQLKT----IDDYDYGYLPRLRKLNLNNNNIDAISETC----F-FNSSQLQIINLSFNRLEKL  684 (719)
Q Consensus       628 Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~----~-~~l~~L~~L~Ls~N~l~~i  684 (719)
                      +++|.+++    ..+..+..+++|++|++++|++++.....    + ....+|+.|++.++.+...
T Consensus       377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~  442 (461)
T 1z7x_W          377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  442 (461)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence            77777764    22334556677777777777776542211    1 1234677777777666543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=4.7e-33  Score=306.45  Aligned_cols=374  Identities=18%  Similarity=0.158  Sum_probs=161.3

Q ss_pred             ccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccC----cCccCCCccCcEEECCCCcCCcCCCCC-CC
Q psy16110        189 DTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIE----EGILKGCDNLLELRMDHNRFTSIPSVS-LN  263 (719)
Q Consensus       189 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~i~~~~-l~  263 (719)
                      ++|++|+|++|.+++...    ...+..+++|++|+|++|.+....    +..+..+++|++|++++|.++...... ..
T Consensus         3 ~~l~~L~Ls~~~l~~~~~----~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~   78 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARW----AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ   78 (461)
T ss_dssp             EEEEEEEEESCCCCHHHH----HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             ccceehhhhhcccCchhH----HHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence            567777777777654210    122556677777777777766431    223455566666666666554311100 11


Q ss_pred             CCC----CCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccc
Q psy16110        264 GPR----ALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF  339 (719)
Q Consensus       264 ~l~----~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  339 (719)
                      .++    +|++|++++|.++....                    ...+.++..+++|++|++++|.++......+.....
T Consensus        79 ~l~~~~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  138 (461)
T 1z7x_W           79 GLQTPSCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL  138 (461)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             HHhhCCCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence            111    34444444444442110                    011334444555555555555544322222111112


Q ss_pred             cCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCc
Q psy16110        340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSA  419 (719)
Q Consensus       340 ~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  419 (719)
                      ...++|++|++++|+++....       ..++..+..+++|++|++++|.+++.........+                .
T Consensus       139 ~~~~~L~~L~L~~n~l~~~~~-------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l----------------~  195 (461)
T 1z7x_W          139 DPQCRLEKLQLEYCSLSAASC-------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGL----------------K  195 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGH-------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH----------------H
T ss_pred             cCCCcceEEECCCCCCCHHHH-------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHH----------------h
Confidence            223456666666665543221       11233344455666666666655432211110000                0


Q ss_pred             cCCCCccEEEccCCCCCCcC----cccccCCCcCcEEeCcCCCCCCCCC-----CCCCCCCCCccEEEcCCCCCCCCC--
Q psy16110        420 LNYKLLTKLDLSHNNLKELE----PTAFTNVPTLLHLNLSRNAHLSSLP-----VGGFDPLKKLEVLDLAATGLKSIP--  488 (719)
Q Consensus       420 ~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~~l~~l~-----~~~~~~l~~L~~L~ls~n~l~~~~--  488 (719)
                      ...++|+.|++++|.+++..    +..+..+++|++|++++| .++...     ...+..+++|++|++++|.++...  
T Consensus       196 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~  274 (461)
T 1z7x_W          196 DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG  274 (461)
T ss_dssp             HSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred             cCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH
Confidence            01234444555555444321    223344455555555554 222211     111223445555555555554421  


Q ss_pred             --chhhcCCCCccEEEccCCcCCCCChhhh-----cCCCCCCEEeCCCCccccc----cCCccCCCCCCCEEEccCCcCC
Q psy16110        489 --QYQFDELLNLKYLCLAHNHLTEIPEMMF-----KNLLNLTYLDLSNNNIVNL----RVGSLYGLPSMKRLDLSFNKLT  557 (719)
Q Consensus       489 --~~~~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~  557 (719)
                        +..+..+++|++|++++|.++......+     ...++|++|++++|.+++.    .+..+..+++|++|++++|+++
T Consensus       275 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence              1234445556666666655543222111     1224555555555555543    1233334455555555555544


Q ss_pred             cccCCcCCCCCCCCCCCCcEEECcCCCCCC----cCcCcccCCCCccEEEcCCCCCC
Q psy16110        558 TFKGDYFNTKSKPNTSSLEELNLNNNELTY----LFPSSFTIHSKLKTLKLAFNKFN  610 (719)
Q Consensus       558 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~  610 (719)
                      +.....+........++|++|++++|.+++    .++..+..+++|++|++++|+++
T Consensus       355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            322211110000002345555555555543    23334444444444554444444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.4e-28  Score=255.17  Aligned_cols=247  Identities=26%  Similarity=0.351  Sum_probs=137.5

Q ss_pred             cEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCC--chhhcCCCCccEEEc
Q psy16110        426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP--QYQFDELLNLKYLCL  503 (719)
Q Consensus       426 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~L  503 (719)
                      +.++.+++.++.++...   .++|++|++++| .++.++...|..+++|++|++++|.++.+.  +..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI---PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcccCCCCC---CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            35666666666665422   245666666666 555666655666666666666666665432  233445566666666


Q ss_pred             cCCcCCCCChhhhcCCCCCCEEeCCCCccccccC-CccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcC
Q psy16110        504 AHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRV-GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN  582 (719)
Q Consensus       504 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~  582 (719)
                      ++|.++.++.. +..+++|++|++++|++++..+ ..+..+++|++|++++|.+.......+.     .+++|++|++++
T Consensus        86 s~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~  159 (306)
T 2z66_A           86 SFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-----GLSSLEVLKMAG  159 (306)
T ss_dssp             CSCSEEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-----TCTTCCEEECTT
T ss_pred             CCCccccChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-----cCcCCCEEECCC
Confidence            66665554432 4555666666666666555443 3455555666666666555544433332     235555666655


Q ss_pred             CCCCC-cCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCC
Q psy16110        583 NELTY-LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS  661 (719)
Q Consensus       583 n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  661 (719)
                      |.+++ ..|..+..+++|++|++++|+++++++..+..+++|++|++++|+++++++..+..+++|++|++++|++++..
T Consensus       160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  239 (306)
T 2z66_A          160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK  239 (306)
T ss_dssp             CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred             CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence            55554 34555555555555555555555555555555555555555555555555545555555555555555555555


Q ss_pred             cccCCCCC-CCcEEECCCCcCC
Q psy16110        662 ETCFFNSS-QLQIINLSFNRLE  682 (719)
Q Consensus       662 ~~~~~~l~-~L~~L~Ls~N~l~  682 (719)
                      +..+..++ +|++|++++|+++
T Consensus       240 ~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          240 KQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             SSSCCCCCTTCCEEECTTCCEE
T ss_pred             HHHHHhhhccCCEEEccCCCee
Confidence            55555542 5555555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=6.5e-28  Score=247.37  Aligned_cols=227  Identities=23%  Similarity=0.334  Sum_probs=184.0

Q ss_pred             cEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCC
Q psy16110        475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN  554 (719)
Q Consensus       475 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  554 (719)
                      +.++.++++++.+|..   -.++|++|++++|.++.++...|..+++|++|++++|.++++.+..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            5677777777777642   2457888888888888777777778888888888888888877778888888888888888


Q ss_pred             c-CCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCC
Q psy16110        555 K-LTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL  633 (719)
Q Consensus       555 ~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  633 (719)
                      + ++.+++..+.     .+++|++|++++|.+++..+..+..+++|++|++++|+++.+++..+..+++|++|++++|++
T Consensus        91 ~~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A           91 AQLRSVDPATFH-----GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             TTCCCCCTTTTT-----TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCccccCHHHhc-----CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence            6 7766555544     358888888888888888778888888888888888888888887788888888888888888


Q ss_pred             cccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCC
Q psy16110        634 KTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGH  712 (719)
Q Consensus       634 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~  712 (719)
                      +++++..+.++++|++|++++|+++++.+..|..+++|++|++++|+++.+++..|..+++| +|++++|++        
T Consensus       166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~--------  237 (285)
T 1ozn_A          166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW--------  237 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE--------
T ss_pred             cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc--------
Confidence            88887778888888888888888888877788888888888888888888888888888888 888888888        


Q ss_pred             ccccC
Q psy16110        713 RCECA  717 (719)
Q Consensus       713 ~C~c~  717 (719)
                      .|+|+
T Consensus       238 ~c~~~  242 (285)
T 1ozn_A          238 VCDCR  242 (285)
T ss_dssp             ECSGG
T ss_pred             cCCCC
Confidence            67775

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.4e-28  Score=260.46  Aligned_cols=274  Identities=19%  Similarity=0.269  Sum_probs=188.7

Q ss_pred             EEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCC
Q psy16110        405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL  484 (719)
Q Consensus       405 L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l  484 (719)
                      .+.+++.++.+|...  .++|++|++++|.++++++..|.++++|++|++++| .++.++...|..+++|++|++++|.+
T Consensus        36 c~~~~~~l~~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l  112 (353)
T 2z80_A           36 CKGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYL  112 (353)
T ss_dssp             EECCSTTCSSCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             eeCCCCCcccccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcC
Confidence            444444454444322  235666666666666666656666777777777777 56666656666777777777777777


Q ss_pred             CCCCchhhcCCCCccEEEccCCcCCCCCh-hhhcCCCCCCEEeCCCC-ccccccCCccCCCCCCCEEEccCCcCCcccCC
Q psy16110        485 KSIPQYQFDELLNLKYLCLAHNHLTEIPE-MMFKNLLNLTYLDLSNN-NIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGD  562 (719)
Q Consensus       485 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  562 (719)
                      +.++...+.++++|++|++++|+++.++. ..|..+++|++|++++| .++.+.+..+.++++|++|++++|+++++.+.
T Consensus       113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  192 (353)
T 2z80_A          113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK  192 (353)
T ss_dssp             SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence            77776667777777777777777777766 55677777777777777 46666666777777777777777777766544


Q ss_pred             cCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhh---cCCCCCCEEECCCCCCccc---
Q psy16110        563 YFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELI---LGLSYLQEIDLSNNQLKTI---  636 (719)
Q Consensus       563 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~~---  636 (719)
                      .+.     .+++|++|++++|.++...+..+..+++|++|++++|++++++...+   ...+.++.++++++.+++.   
T Consensus       193 ~l~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~  267 (353)
T 2z80_A          193 SLK-----SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF  267 (353)
T ss_dssp             TTT-----TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred             HHh-----ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence            443     34777777777777766644445557778888888877776554332   2356778888888877652   


Q ss_pred             -CcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcCh
Q psy16110        637 -DDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPE  686 (719)
Q Consensus       637 -~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~  686 (719)
                       .+..+..+++|++|++++|+++.+++..|..+++|++|++++|++.+-++
T Consensus       268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence             22356778889999999999888887777888899999999998886543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=4.7e-28  Score=248.40  Aligned_cols=238  Identities=26%  Similarity=0.420  Sum_probs=201.5

Q ss_pred             CCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCccc
Q psy16110        104 FPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKL  183 (719)
Q Consensus       104 ~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~  183 (719)
                      ||..|+|...  ....++|.+..++     .+                   |..++    .++++|++++|.++.++...
T Consensus         2 CP~~C~C~~~--~~~~~~c~~~~l~-----~i-------------------p~~~~----~~l~~L~l~~n~i~~~~~~~   51 (285)
T 1ozn_A            2 CPGACVCYNE--PKVTTSCPQQGLQ-----AV-------------------PVGIP----AASQRIFLHGNRISHVPAAS   51 (285)
T ss_dssp             CCTTCEEECS--SSCEEECCSSCCS-----SC-------------------CTTCC----TTCSEEECTTSCCCEECTTT
T ss_pred             cCCCceECCC--CCeEEEcCcCCcc-----cC-------------------CcCCC----CCceEEEeeCCcCCccCHHH
Confidence            5668999642  2367889876555     33                   32222    25999999999999999888


Q ss_pred             ccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCC-CcccCcCccCCCccCcEEECCCCcCCcCCCCCC
Q psy16110        184 FSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQ-IKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL  262 (719)
Q Consensus       184 f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l  262 (719)
                      |. .+++|++|++++|.+.+.     .+..|.++++|++|++++|. +..+++..|.++++|++|++++|.++.+++..+
T Consensus        52 ~~-~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  125 (285)
T 1ozn_A           52 FR-ACRNLTILWLHSNVLARI-----DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF  125 (285)
T ss_dssp             TT-TCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             cc-cCCCCCEEECCCCcccee-----CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh
Confidence            85 679999999999999863     34578999999999999997 888888889999999999999999999988789


Q ss_pred             CCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCC
Q psy16110        263 NGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL  342 (719)
Q Consensus       263 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l  342 (719)
                      .++++|++|++++|.++.+++..|..+++|++|++++|.++++++.+|..+++|++|++++|.++++.+.     .+..+
T Consensus       126 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l  200 (285)
T 1ozn_A          126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH-----AFRDL  200 (285)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-----TTTTC
T ss_pred             hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh-----HccCc
Confidence            9999999999999999999888899999999999999999999988899999999999999999988665     46678


Q ss_pred             CCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCc
Q psy16110        343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINL  393 (719)
Q Consensus       343 ~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~  393 (719)
                      ++|+.|++++|+++.++.           ..+..+++|+.|++++|.+...
T Consensus       201 ~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          201 GRLMTLYLFANNLSALPT-----------EALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             TTCCEEECCSSCCSCCCH-----------HHHTTCTTCCEEECCSSCEECS
T ss_pred             ccccEeeCCCCcCCcCCH-----------HHcccCcccCEEeccCCCccCC
Confidence            999999999999876543           3355688999999999987743

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=3.6e-27  Score=257.48  Aligned_cols=247  Identities=25%  Similarity=0.401  Sum_probs=141.5

Q ss_pred             CCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCC
Q psy16110        402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA  481 (719)
Q Consensus       402 L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~  481 (719)
                      ...++.++..++.+|...  .++++.|++++|++.++.+..|.++++|++|++++| .+..++...|.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCC
Confidence            445666666666666433  255666666666666666666666666666666666 55555555556666666666666


Q ss_pred             CCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCC-CccccccCCccCCCCCCCEEEccCCcCCccc
Q psy16110        482 TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN-NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFK  560 (719)
Q Consensus       482 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~  560 (719)
                      |+++.++...|..+++|++|++++|.++.++...|..+++|++|++++ +.+..+.+..|.++++|++|++++|+++.++
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  201 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP  201 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence            666666555556666666666666666655555555666666666665 3344444445555566666666666555443


Q ss_pred             CCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCccc
Q psy16110        561 GDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYD  640 (719)
Q Consensus       561 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  640 (719)
                      .       +..+++|++|+|++|.+++..+..|..+++|++|++++|+++.+++..|.++++|+.|+|++|+++++++..
T Consensus       202 ~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  274 (440)
T 3zyj_A          202 N-------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL  274 (440)
T ss_dssp             C-------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             c-------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence            1       122355555555555555555555555555555555555555555555555555555555555555555545


Q ss_pred             CCCCCCCCEEeCCCCcCC
Q psy16110        641 YGYLPRLRKLNLNNNNID  658 (719)
Q Consensus       641 l~~l~~L~~L~Ls~N~l~  658 (719)
                      |..+++|+.|+|++|++.
T Consensus       275 ~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          275 FTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TSSCTTCCEEECCSSCEE
T ss_pred             hccccCCCEEEcCCCCcc
Confidence            555555555555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=4.6e-27  Score=257.55  Aligned_cols=247  Identities=26%  Similarity=0.388  Sum_probs=133.2

Q ss_pred             CCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCC
Q psy16110        402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA  481 (719)
Q Consensus       402 L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~  481 (719)
                      ...++.++..++.++...  .++++.|++++|+++++.+..|.++++|++|++++| .+..++...|.++++|++|++++
T Consensus        56 ~~~v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCC
Confidence            345666666666665432  246666666666666666666666666666666666 55555555566666666666666


Q ss_pred             CCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCC-CccccccCCccCCCCCCCEEEccCCcCCccc
Q psy16110        482 TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN-NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFK  560 (719)
Q Consensus       482 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~  560 (719)
                      |.++.++...|..+++|++|++++|.++.++...|..+++|++|++++ +.+..+.+..|.++++|++|++++|++++++
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  212 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP  212 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence            666666555555566666666666666655555555556666666655 3344444444555555555555555554432


Q ss_pred             CCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCccc
Q psy16110        561 GDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYD  640 (719)
Q Consensus       561 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  640 (719)
                      .       +..+++|++|++++|.+++..|..|..+++|++|++++|+++.+++..|.++++|+.|+|++|+++++++..
T Consensus       213 ~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  285 (452)
T 3zyi_A          213 N-------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL  285 (452)
T ss_dssp             C-------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred             c-------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence            1       112344555555555544444444444444444444444444444444444444444444444444444444


Q ss_pred             CCCCCCCCEEeCCCCcCC
Q psy16110        641 YGYLPRLRKLNLNNNNID  658 (719)
Q Consensus       641 l~~l~~L~~L~Ls~N~l~  658 (719)
                      |..+++|+.|+|++|++.
T Consensus       286 ~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          286 FTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             STTCTTCCEEECCSSCEE
T ss_pred             hccccCCCEEEccCCCcC
Confidence            444444444444444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2e-27  Score=246.49  Aligned_cols=280  Identities=26%  Similarity=0.323  Sum_probs=167.0

Q ss_pred             CEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCC--CCCCCCCCCccEEEcC
Q psy16110        403 DNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLP--VGGFDPLKKLEVLDLA  480 (719)
Q Consensus       403 ~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~--~~~~~~l~~L~~L~ls  480 (719)
                      +.++.+++.++.++...  .++|++|++++|.++++++..|.++++|++|++++| .++.++  ...+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECC
Confidence            45666666666665432  256666777766666666666666666777777666 444332  1123345666677777


Q ss_pred             CCCCCCCCchhhcCCCCccEEEccCCcCCCCCh-hhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCc-
Q psy16110        481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPE-MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT-  558 (719)
Q Consensus       481 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-  558 (719)
                      +|.+..++. .+..+++|++|++++|.++.++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ 
T Consensus        87 ~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEEEEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCccccChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            666666554 35566667777777666666554 445666667777777666666666666666667777776666654 


Q ss_pred             ccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCc
Q psy16110        559 FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD  638 (719)
Q Consensus       559 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  638 (719)
                      ..+..+.     .+++|++|++++|.+++..|..+..+++|++|++++|+++++++..+..+++|++|++++|++++..+
T Consensus       166 ~~~~~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          166 FLPDIFT-----ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             EECSCCT-----TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             cchhHHh-----hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence            2222222     34666677777776666666666666667777777766666666556666667777777776666666


Q ss_pred             ccCCCCC-CCCEEeCCCCcCCCCCc--ccCCCCCCCcEEECCCCcCCCcChHhhcC
Q psy16110        639 YDYGYLP-RLRKLNLNNNNIDAISE--TCFFNSSQLQIINLSFNRLEKLPERLFNT  691 (719)
Q Consensus       639 ~~l~~l~-~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~  691 (719)
                      ..+..++ +|++|++++|++++..+  .....+...+.+.+..+.+.+..+..+++
T Consensus       241 ~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          241 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             SSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred             HHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence            5666663 66677777766665422  11111233334444555555433333343

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=1.8e-28  Score=254.77  Aligned_cols=252  Identities=23%  Similarity=0.259  Sum_probs=170.1

Q ss_pred             CCccEEEccCCCCCC--cCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccE
Q psy16110        423 KLLTKLDLSHNNLKE--LEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKY  500 (719)
Q Consensus       423 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~  500 (719)
                      .+++.|++++|.+.+  ..+..+.++++|++|++++                        .|.+.+..+..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~------------------------~n~l~~~~p~~l~~l~~L~~  105 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG------------------------INNLVGPIPPAIAKLTQLHY  105 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEE------------------------ETTEESCCCGGGGGCTTCSE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCC------------------------CCcccccCChhHhcCCCCCE
Confidence            356666666666665  4445555555666665553                        13333333334555555555


Q ss_pred             EEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCC-CCcEEE
Q psy16110        501 LCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTS-SLEELN  579 (719)
Q Consensus       501 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~-~L~~L~  579 (719)
                      |++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..     ++ .|++|+
T Consensus       106 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-----l~~~L~~L~  180 (313)
T 1ogq_A          106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-----FSKLFTSMT  180 (313)
T ss_dssp             EEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-----CCTTCCEEE
T ss_pred             EECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-----hhhcCcEEE
Confidence            555555555333334555666666666666666555556666666666666666665322222221     24 677777


Q ss_pred             CcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCC
Q psy16110        580 LNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDA  659 (719)
Q Consensus       580 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  659 (719)
                      +++|.+++..|..+..++ |++|++++|++++..+..+..+++|++|++++|.+++..+. +..+++|++|++++|++++
T Consensus       181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~  258 (313)
T 1ogq_A          181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred             CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence            777777777777777776 88888888888877777788888888888888888876663 7778889999999998887


Q ss_pred             CCcccCCCCCCCcEEECCCCcCC-CcChHhhcCcccc-EEecCCCceeee
Q psy16110        660 ISETCFFNSSQLQIINLSFNRLE-KLPERLFNTFLYT-NYDMAPNLVFQS  707 (719)
Q Consensus       660 ~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L-~L~l~~N~l~~~  707 (719)
                      ..|..|..+++|++|+|++|+++ .+|..  ..++.| .+++++|+...+
T Consensus       259 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSSEEES
T ss_pred             cCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCCCccC
Confidence            77777888889999999999888 55542  678888 889999986444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=1.8e-28  Score=254.68  Aligned_cols=247  Identities=21%  Similarity=0.248  Sum_probs=143.1

Q ss_pred             ccCCEEEccCCcccc---cccCccCCCCccEEEccC-CCCCCcCcccccCCCcCcEEeCcCCCCCC-CCCCCCCCCCCCc
Q psy16110        400 DTLDNLNVRDNQITT---LSSSALNYKLLTKLDLSH-NNLKELEPTAFTNVPTLLHLNLSRNAHLS-SLPVGGFDPLKKL  474 (719)
Q Consensus       400 ~~L~~L~l~~n~l~~---~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~~l~-~l~~~~~~~l~~L  474 (719)
                      ..++.|++++|.+++   ++..+..+++|++|++++ |.+.+..+..|.++++|++|++++| .+. .+|. .|..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~-~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPD-FLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCG-GGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCH-HHhCCCCC
Confidence            479999999999985   555566699999999995 8888877888888888888888888 444 4443 35666667


Q ss_pred             cEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCC-CCCEEeCCCCccccccCCccCCCCCCCEEEccC
Q psy16110        475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLL-NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSF  553 (719)
Q Consensus       475 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~  553 (719)
                      ++|++++|.+++..+..+..+++|++|++++|++++..+..+..++ +|++|++++|++++..|..+..++ |++|++++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            7777776666654444566666666666666666532223344454 566666666666555555555544 55555555


Q ss_pred             CcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCC
Q psy16110        554 NKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL  633 (719)
Q Consensus       554 n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  633 (719)
                      |++++..+..+.     .+++|++|++++|.+++..+. +..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus       207 N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          207 NMLEGDASVLFG-----SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             SEEEECCGGGCC-----TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             CcccCcCCHHHh-----cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence            555443333332     224455555555554444332 44444444444444444433333344444444444444444


Q ss_pred             cccCcccCCCCCCCCEEeCCCCc
Q psy16110        634 KTIDDYDYGYLPRLRKLNLNNNN  656 (719)
Q Consensus       634 ~~~~~~~l~~l~~L~~L~Ls~N~  656 (719)
                      ++..+.. ..+++|+.+++++|+
T Consensus       281 ~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          281 CGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cccCCCC-ccccccChHHhcCCC
Confidence            4333321 344444444444444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=6.6e-26  Score=254.79  Aligned_cols=267  Identities=26%  Similarity=0.277  Sum_probs=179.8

Q ss_pred             CccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCC
Q psy16110        379 KLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNA  458 (719)
Q Consensus       379 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  458 (719)
                      +++.|++++|.++.+|... .++|+.|++++|.++.++.   .+++|++|++++|++++++.    .+++|++|++++| 
T Consensus        41 ~l~~L~ls~n~L~~lp~~l-~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-  111 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-  111 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCC-CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-
T ss_pred             CCcEEEecCCCcCccChhh-CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-
Confidence            3556666666655555421 2456666666666665554   35666777777776666543    4566777777776 


Q ss_pred             CCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCC
Q psy16110        459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVG  538 (719)
Q Consensus       459 ~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~  538 (719)
                      .+..+|.    .+++|+.|++++|+++.++..    +++|++|++++|.++.++.    .+++|+.|++++|+++.+.  
T Consensus       112 ~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~--  177 (622)
T 3g06_A          112 PLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP--  177 (622)
T ss_dssp             CCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC--
T ss_pred             cCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc--
Confidence            5666654    346677777777777766642    3677777777777776653    2467777777777777653  


Q ss_pred             ccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhc
Q psy16110        539 SLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL  618 (719)
Q Consensus       539 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  618 (719)
                        ..+++|+.|++++|.+++++..         .++|+.|++++|.++.+. .   .+++|++|++++|+++.+|    .
T Consensus       178 --~~~~~L~~L~Ls~N~l~~l~~~---------~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~lp----~  238 (622)
T 3g06_A          178 --MLPSGLQELSVSDNQLASLPTL---------PSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSLP----V  238 (622)
T ss_dssp             --CCCTTCCEEECCSSCCSCCCCC---------CTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSCCC----C
T ss_pred             --ccCCCCcEEECCCCCCCCCCCc---------cchhhEEECcCCcccccC-C---CCCCCCEEEccCCccCcCC----C
Confidence              3457777777777777765431         267788888888777653 2   2467888888888888776    3


Q ss_pred             CCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCc
Q psy16110        619 GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTF  692 (719)
Q Consensus       619 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l  692 (719)
                      .+++|+.|++++|+++.++.    .+++|+.|++++|+++.+++ .|.++++|+.|+|++|+++..++..|..+
T Consensus       239 ~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          239 LPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCG-GGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             CCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCH-HHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            45778888888888887665    45778888888888886654 47778888888888888886666555533

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=1.4e-25  Score=252.07  Aligned_cols=258  Identities=28%  Similarity=0.325  Sum_probs=225.6

Q ss_pred             ccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEc
Q psy16110        400 DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL  479 (719)
Q Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~l  479 (719)
                      ..++.|++++|.++.++....  ++|+.|++++|.++.++.    .+++|++|++++| .++.+|.    .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV----LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC----CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC----CCCCCCEEEC
Confidence            469999999999998886554  899999999999998865    5789999999999 7888886    5799999999


Q ss_pred             CCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcc
Q psy16110        480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTF  559 (719)
Q Consensus       480 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  559 (719)
                      ++|.++.++.    .+++|++|++++|+++.++..    +++|++|++++|+++++..    ..++|+.|++++|.++.+
T Consensus       109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l  176 (622)
T 3g06_A          109 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL  176 (622)
T ss_dssp             CSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC
T ss_pred             cCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCC
Confidence            9999999876    578999999999999998863    5899999999999988632    357899999999999987


Q ss_pred             cCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcc
Q psy16110        560 KGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDY  639 (719)
Q Consensus       560 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  639 (719)
                      + .        .+++|+.|++++|.++++ |.   ..++|+.|++++|.++.++.    .+++|+.|++++|++++++  
T Consensus       177 ~-~--------~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp--  237 (622)
T 3g06_A          177 P-M--------LPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP--  237 (622)
T ss_dssp             C-C--------CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC--
T ss_pred             c-c--------cCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC--
Confidence            6 1        248899999999999986 33   35899999999999999884    3589999999999999877  


Q ss_pred             cCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceee
Q psy16110        640 DYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQ  706 (719)
Q Consensus       640 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~  706 (719)
                        ..+++|+.|++++|+|+.+++    .+++|+.|+|++|+|+.+|.. |.++++| .|+|++|++..
T Consensus       238 --~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          238 --VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             --CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCSCCCCH
T ss_pred             --CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHH-HhhccccCEEEecCCCCCC
Confidence              456899999999999998876    468999999999999999874 7899999 99999999975

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=8.8e-26  Score=229.39  Aligned_cols=204  Identities=25%  Similarity=0.383  Sum_probs=134.8

Q ss_pred             ccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcE
Q psy16110        498 LKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEE  577 (719)
Q Consensus       498 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~  577 (719)
                      .++++++++.++.+|...   .+++++|++++|+++.+.+..|.++++|++|++++|+++.++...|..     +++|++
T Consensus        18 ~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~-----l~~L~~   89 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE-----LKNLET   89 (270)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS-----CTTCCE
T ss_pred             CCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC-----CCCCCE
Confidence            445555555555554321   145566666666666555555666666666666666666555444432     366666


Q ss_pred             EECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcC
Q psy16110        578 LNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNI  657 (719)
Q Consensus       578 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  657 (719)
                      |++++|.++++.+..|..+++|++|++++|+++.+++..+..+++|++|++++|.++++++..|..+++|++|++++|++
T Consensus        90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  169 (270)
T 2o6q_A           90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL  169 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence            66666666666566666677777777777777777666667777777777777777777666667777777777777777


Q ss_pred             CCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCCccccC
Q psy16110        658 DAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHRCECA  717 (719)
Q Consensus       658 ~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~  717 (719)
                      +++++..|..+++|++|++++|+++.+++..|..+++| .|++++||+        .|+|.
T Consensus       170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~c~c~  222 (270)
T 2o6q_A          170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW--------DCTCN  222 (270)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB--------CCSSS
T ss_pred             cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe--------eCCCc
Confidence            77776667777777777777777777777777777777 777777777        66665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=6.1e-26  Score=231.47  Aligned_cols=215  Identities=25%  Similarity=0.335  Sum_probs=106.5

Q ss_pred             CCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCC
Q psy16110        459 HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVG  538 (719)
Q Consensus       459 ~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~  538 (719)
                      .+.++|...   .++|++|++++|+++.++...|.++++|++|++++|.++.++...|..+++|++|++++|+++++.+.
T Consensus        18 ~l~~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (276)
T 2z62_A           18 NFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG   94 (276)
T ss_dssp             CCSSCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CccccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence            444455432   23456666666666555555555555666666666655555555555555555555555555555555


Q ss_pred             ccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCc-CcCcccCCCCccEEEcCCCCCCCcChhhh
Q psy16110        539 SLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYL-FPSSFTIHSKLKTLKLAFNKFNYFPKELI  617 (719)
Q Consensus       539 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  617 (719)
                      .+.++++|++|++++|.++.++...+.     .+++|++|++++|.+++. .|..+..+++|++|++++|+++++++..+
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  169 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLASLENFPIG-----HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  169 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCCCT-----TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             hhcCCccccEEECCCCCccccCchhcc-----cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence            555555555555555555544332222     235555555555555443 24444455555555555555554444434


Q ss_pred             cCCCCCC----EEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCC
Q psy16110        618 LGLSYLQ----EIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE  682 (719)
Q Consensus       618 ~~l~~L~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  682 (719)
                      ..+++|+    +|++++|.++++++..+.. .+|++|++++|+++++++..|..+++|++|++++|+++
T Consensus       170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             HHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             hhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            3333333    4444444444444433222 24444444444444444444444444444444444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=4.8e-27  Score=244.59  Aligned_cols=266  Identities=21%  Similarity=0.225  Sum_probs=207.7

Q ss_pred             CccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEc
Q psy16110        424 LLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCL  503 (719)
Q Consensus       424 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L  503 (719)
                      +++..+++.+.+.......+..+++|++|++++| .++.+++..|..+++|++|++++|.++++++  +..+++|++|++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            3566677777777666666677788999999988 7777776667888889999999998887664  778888999999


Q ss_pred             cCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCC
Q psy16110        504 AHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN  583 (719)
Q Consensus       504 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n  583 (719)
                      ++|.+++++.     .++|++|++++|++++..+..   +++|++|++++|+++.+++..+..     +++|++|++++|
T Consensus        88 s~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~Ls~N  154 (317)
T 3o53_A           88 NNNYVQELLV-----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGC-----RSRVQYLDLKLN  154 (317)
T ss_dssp             CSSEEEEEEE-----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGG-----GSSEEEEECTTS
T ss_pred             cCCccccccC-----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhc-----cCCCCEEECCCC
Confidence            9888876653     378889999988888875543   577888899988888776655543     488888999988


Q ss_pred             CCCCcCcCccc-CCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110        584 ELTYLFPSSFT-IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE  662 (719)
Q Consensus       584 ~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~  662 (719)
                      .+++..+..+. .+++|++|++++|+++.++..  ..+++|++|++++|+++++++. +..+++|++|++++|+++++++
T Consensus       155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~  231 (317)
T 3o53_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK  231 (317)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT
T ss_pred             CCCcccHHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhh
Confidence            88887666664 678888999988888887543  3578888999998888888774 7788888899998888887755


Q ss_pred             ccCCCCCCCcEEECCCCcCC-CcChHhhcCcccc-EEecCCCceeeecc
Q psy16110        663 TCFFNSSQLQIINLSFNRLE-KLPERLFNTFLYT-NYDMAPNLVFQSHL  709 (719)
Q Consensus       663 ~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L-~L~l~~N~l~~~~~  709 (719)
                       .+..+++|+.|++++|+++ ...+.++..++.| .+++++|+-..+..
T Consensus       232 -~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~  279 (317)
T 3o53_A          232 -ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN  279 (317)
T ss_dssp             -TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred             -HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence             4777888889999888888 5555677888888 88888665544443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1e-27  Score=249.65  Aligned_cols=260  Identities=23%  Similarity=0.250  Sum_probs=202.8

Q ss_pred             cCCEEEccCCcccccccCccC-CCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEc
Q psy16110        401 TLDNLNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDL  479 (719)
Q Consensus       401 ~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~l  479 (719)
                      .++..+++.+.+.......+. +++|++|++++|.++++.+..|.++++|++|++++| .+..+++  |..+++|++|++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE--ETTCTTCCEEEC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh--hhhcCCCCEEEC
Confidence            355556666666655444443 678889999999888888888888889999999888 5655554  778888999999


Q ss_pred             CCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcc
Q psy16110        480 AATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTF  559 (719)
Q Consensus       480 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  559 (719)
                      ++|.+++++.     .++|++|++++|.++.++..   .+++|++|++++|+++++.+..+..+++|++|++++|.++++
T Consensus        88 s~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           88 NNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             CSSEEEEEEE-----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             cCCccccccC-----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            9888877653     37888999999888877653   357888999999988888777888888899999999888876


Q ss_pred             cCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcc
Q psy16110        560 KGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDY  639 (719)
Q Consensus       560 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  639 (719)
                      +...+..    .+++|++|++++|.+++...  ...+++|++|++++|+++++++. +..+++|++|++++|++++++. 
T Consensus       160 ~~~~~~~----~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~-  231 (317)
T 3o53_A          160 NFAELAA----SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-  231 (317)
T ss_dssp             EGGGGGG----GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-
T ss_pred             cHHHHhh----ccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhh-
Confidence            6554421    24788999999998887732  33588899999999988888876 7788889999999998888765 


Q ss_pred             cCCCCCCCCEEeCCCCcCC-CCCcccCCCCCCCcEEECCCC
Q psy16110        640 DYGYLPRLRKLNLNNNNID-AISETCFFNSSQLQIINLSFN  679 (719)
Q Consensus       640 ~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N  679 (719)
                      .+..+++|+.|++++|++. +..+..+..+++|+.+++++|
T Consensus       232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            5788888999999999888 555666777888888888754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=3.3e-25  Score=227.14  Aligned_cols=198  Identities=26%  Similarity=0.312  Sum_probs=96.6

Q ss_pred             CCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCC
Q psy16110        495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSS  574 (719)
Q Consensus       495 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~  574 (719)
                      ++++++++++++.++.+|...   .+++++|++++|.++++.+..|..+++|++|++++|.++.++..       ..+++
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~l~~   78 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-------GTLPV   78 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-------SCCTT
T ss_pred             cCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-------CCCCc
Confidence            334444444444444443321   13444444444444444444444444444444444444443321       12344


Q ss_pred             CcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCC
Q psy16110        575 LEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN  654 (719)
Q Consensus       575 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  654 (719)
                      |++|++++|+++.+ |..+..+++|++|++++|+++.+++..|.++++|++|++++|+++++++..|..+++|+.|++++
T Consensus        79 L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           79 LGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CCEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCEEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence            55555555555433 33444555555555555555555544455555555555555555555554455555555555555


Q ss_pred             CcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCce
Q psy16110        655 NNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLV  704 (719)
Q Consensus       655 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l  704 (719)
                      |+++++++..|..+++|++|+|++|+++.+|..+| .++.| .+++++||+
T Consensus       158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPW  207 (290)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCB
T ss_pred             CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCc
Confidence            55555555545555555555555555555555443 23355 555555555

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=9.6e-29  Score=281.02  Aligned_cols=385  Identities=16%  Similarity=0.118  Sum_probs=171.0

Q ss_pred             CCCCCcEEEcCCCcCcccCCCcccC-C-CccCEEEccCCC-CcccC-cccccCcccCcEEEcCCCCCCCcCCCccccccc
Q psy16110        264 GPRALRILSMAYNRIGTLKADSFLS-Q-RWLERIILRGNR-LTTIE-GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF  339 (719)
Q Consensus       264 ~l~~L~~L~Ls~n~i~~~~~~~~~~-l-~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  339 (719)
                      .+++|++|++++|.++......+.. + .+|++|++++|. ++... +.....+++|++|++++|.+++.+...+.. ..
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~  188 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LA  188 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HH
Confidence            3455555555555544333333332 2 236666666554 11100 111124556666666666554432211111 22


Q ss_pred             cCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCC-cchhccCCEEEccCCccc----c
Q psy16110        340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLES-TGLEDTLDNLNVRDNQIT----T  414 (719)
Q Consensus       340 ~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~L~~L~l~~n~l~----~  414 (719)
                      ..+++|++|++++|.++.+..       ..++..+..+++|++|++++|.+..++. ....++|++|+++.....    .
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~  261 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISP-------KDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPE  261 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCH-------HHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred             hcCCCccEEEeeccCCCccCH-------HHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHH
Confidence            345566666666665543221       1223334455666666666665554432 233345555555532211    1


Q ss_pred             cccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCC-CCCCCCCCccEEEcCCCCCCC-CCchhh
Q psy16110        415 LSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV-GGFDPLKKLEVLDLAATGLKS-IPQYQF  492 (719)
Q Consensus       415 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~-~~~~~l~~L~~L~ls~n~l~~-~~~~~~  492 (719)
                      .......+++|+.++++++....+ +..+..+++|++|++++|. ++.... ..+..+++|+.|+++++ +.. ......
T Consensus       262 ~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~  338 (592)
T 3ogk_B          262 KYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLA  338 (592)
T ss_dssp             SSSCCCCCTTCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH
T ss_pred             HHHHhhccccccccCccccchhHH-HHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHH
Confidence            111222355566666655433222 3344555666666666652 221111 11344556666666522 221 111122


Q ss_pred             cCCCCccEEEccC-----------CcCCCCCh-hhhcCCCCCCEEeCCCCccccccCCccCC-CCCCCEEEcc----CCc
Q psy16110        493 DELLNLKYLCLAH-----------NHLTEIPE-MMFKNLLNLTYLDLSNNNIVNLRVGSLYG-LPSMKRLDLS----FNK  555 (719)
Q Consensus       493 ~~~~~L~~L~L~~-----------n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~----~n~  555 (719)
                      ..+++|++|++++           +.++.... ..+..+++|++|+++.|.+++..+..+.. +++|++|+++    .|.
T Consensus       339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~  418 (592)
T 3ogk_B          339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER  418 (592)
T ss_dssp             HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred             HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence            3455666666662           23332111 11234566666666555555543333333 5566666664    334


Q ss_pred             CCcccCCc-CCCCCCCCCCCCcEEECcCCC--CCCcCcCccc-CCCCccEEEcCCCCCCCcC-hhhhcCCCCCCEEECCC
Q psy16110        556 LTTFKGDY-FNTKSKPNTSSLEELNLNNNE--LTYLFPSSFT-IHSKLKTLKLAFNKFNYFP-KELILGLSYLQEIDLSN  630 (719)
Q Consensus       556 l~~~~~~~-~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~  630 (719)
                      +++.+.+. +. ..+..+++|++|++++|.  +++.....+. .+++|++|++++|++++.. +..+.++++|++|++++
T Consensus       419 l~~~p~~~~~~-~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~  497 (592)
T 3ogk_B          419 ITDLPLDNGVR-SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG  497 (592)
T ss_dssp             CSSCCCHHHHH-HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred             ccCchHHHHHH-HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence            44322110 00 000123556666665432  3333222222 2555666666555554321 22234555566666666


Q ss_pred             CCCccc-CcccCCCCCCCCEEeCCCCcCCCC
Q psy16110        631 NQLKTI-DDYDYGYLPRLRKLNLNNNNIDAI  660 (719)
Q Consensus       631 n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~  660 (719)
                      |.+++. .+..+..+++|++|++++|+++..
T Consensus       498 n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            555432 111223455555556655555543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=7.5e-28  Score=273.65  Aligned_cols=398  Identities=14%  Similarity=0.068  Sum_probs=277.0

Q ss_pred             cCCCccCEEEccCCCCcccCcccccC-c-ccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCcccccccc
Q psy16110        287 LSQRWLERIILRGNRLTTIEGGAFNG-L-AKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQ  364 (719)
Q Consensus       287 ~~l~~L~~L~Ls~n~i~~~~~~~~~~-l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~  364 (719)
                      ..+++|++|++++|.+++.....+.. + .+|++|++++|.-  +....+.. ....+++|++|++++|.++..+..   
T Consensus       109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~--~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~---  182 (592)
T 3ogk_B          109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG--FTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGK---  182 (592)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE--EEHHHHHH-HHHHCTTCSEEECTTCEEECCCSH---
T ss_pred             hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC--cCHHHHHH-HHhhCCCCCEEECccccccCcchh---
Confidence            37899999999999888766666665 3 4499999998862  22111111 234689999999999987543211   


Q ss_pred             CcccccccccccCCCccEEECCCCCCcCcCC------cchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCC--
Q psy16110        365 GTHITIFSFFQDFQKLKSLDLNGNFLINLES------TGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK--  436 (719)
Q Consensus       365 ~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~--  436 (719)
                          .++..+..+++|++|++++|.++.+..      ...+++|+.|++++|.+.+++.....+++|+.|+++.....  
T Consensus       183 ----~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~  258 (592)
T 3ogk_B          183 ----WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIG  258 (592)
T ss_dssp             ----HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTT
T ss_pred             ----HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccc
Confidence                133345578999999999999874432      23467899999999999887765556899999999864322  


Q ss_pred             -CcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCc-hhhcCCCCccEEEccCCcCCC-CCh
Q psy16110        437 -ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ-YQFDELLNLKYLCLAHNHLTE-IPE  513 (719)
Q Consensus       437 -~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~-~~~  513 (719)
                       ......+..+++|+.++++++ ....++. .+..+++|++|++++|.++.... ..+..+++|++|+++++ +.. ...
T Consensus       259 ~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~  335 (592)
T 3ogk_B          259 MPEKYMNLVFPRKLCRLGLSYM-GPNEMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLE  335 (592)
T ss_dssp             CTTSSSCCCCCTTCCEEEETTC-CTTTGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHH
T ss_pred             hHHHHHHhhccccccccCcccc-chhHHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHH
Confidence             222345677889999999886 5555554 36678899999999998665333 34678999999999833 332 222


Q ss_pred             hhhcCCCCCCEEeCCC-----------CccccccC-CccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECc
Q psy16110        514 MMFKNLLNLTYLDLSN-----------NNIVNLRV-GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLN  581 (719)
Q Consensus       514 ~~~~~l~~L~~L~Ls~-----------n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls  581 (719)
                      ..+..+++|++|++++           +.+++... .....+++|++|+++.|.+++.....+..    .+++|++|+++
T Consensus       336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~----~~~~L~~L~l~  411 (592)
T 3ogk_B          336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT----YLKNLCDFRLV  411 (592)
T ss_dssp             HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH----HCCSCCEEEEE
T ss_pred             HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh----hCCCCcEEEEe
Confidence            3346689999999993           56665322 22446899999999888877543322221    25889999996


Q ss_pred             ----CCCCCCc-----CcCcccCCCCccEEEcCCCC--CCCcChhhh-cCCCCCCEEECCCCCCcccC-cccCCCCCCCC
Q psy16110        582 ----NNELTYL-----FPSSFTIHSKLKTLKLAFNK--FNYFPKELI-LGLSYLQEIDLSNNQLKTID-DYDYGYLPRLR  648 (719)
Q Consensus       582 ----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~  648 (719)
                          .|.+++.     .+..+..+++|++|++++|.  ++......+ ..+++|+.|++++|++++.. +..+.++++|+
T Consensus       412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  491 (592)
T 3ogk_B          412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ  491 (592)
T ss_dssp             ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred             ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence                5677764     23336678999999997654  554333333 45889999999999988532 33457889999


Q ss_pred             EEeCCCCcCCCC-CcccCCCCCCCcEEECCCCcCCCcChHhh-cCcccc-EEecCC
Q psy16110        649 KLNLNNNNIDAI-SETCFFNSSQLQIINLSFNRLEKLPERLF-NTFLYT-NYDMAP  701 (719)
Q Consensus       649 ~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~-~~l~~L-~L~l~~  701 (719)
                      +|++++|++++. .+..+..+++|++|+|++|+++......+ ..++.+ ...+..
T Consensus       492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            999999998654 23334568999999999999886543333 456777 444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2e-24  Score=220.17  Aligned_cols=225  Identities=25%  Similarity=0.332  Sum_probs=195.3

Q ss_pred             EEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCc
Q psy16110        476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK  555 (719)
Q Consensus       476 ~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  555 (719)
                      .++..+.++..+|...   .++|++|++++|.++.++...|..+++|++|++++|+++++.+..+..+++|++|++++|+
T Consensus        11 ~~~c~~~~l~~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCSSCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCccccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            4666777777777632   3579999999999999888788999999999999999999888889999999999999999


Q ss_pred             CCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcC-hhhhcCCCCCCEEECCCCCCc
Q psy16110        556 LTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFP-KELILGLSYLQEIDLSNNQLK  634 (719)
Q Consensus       556 l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~  634 (719)
                      ++.++...+.     .+++|++|++++|.+++..+..+..+++|++|++++|+++.+. +..+.++++|++|++++|+++
T Consensus        88 l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A           88 IQSLALGAFS-----GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             CCEECTTTTT-----TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cCccChhhhc-----CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            9888766654     4599999999999999988778999999999999999998854 566889999999999999999


Q ss_pred             ccCcccCCCCCCCC----EEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeecc
Q psy16110        635 TIDDYDYGYLPRLR----KLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHL  709 (719)
Q Consensus       635 ~~~~~~l~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~  709 (719)
                      ++++..+..+++|+    .|++++|+++++++..+.. .+|++|++++|+++.+|+..|.++++| +|++++|++     
T Consensus       163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~-----  236 (276)
T 2z62_A          163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW-----  236 (276)
T ss_dssp             EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB-----
T ss_pred             cCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcc-----
Confidence            98877777777777    8999999999988876654 589999999999999999999999999 999999999     


Q ss_pred             CCCccccC
Q psy16110        710 SGHRCECA  717 (719)
Q Consensus       710 ~~~~C~c~  717 (719)
                         .|+|.
T Consensus       237 ---~c~c~  241 (276)
T 2z62_A          237 ---DCSCP  241 (276)
T ss_dssp             ---CCCTT
T ss_pred             ---cccCC
Confidence               78886

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=4.1e-24  Score=217.06  Aligned_cols=203  Identities=30%  Similarity=0.438  Sum_probs=141.0

Q ss_pred             CccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEcc
Q psy16110        473 KLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS  552 (719)
Q Consensus       473 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  552 (719)
                      ..+.+++++++++.+|...   .+++++|++++|.++.++...|..+++|++|++++|+++.+.+..|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            3455566666555555321   2456666666666666665556666666666666666666655556666666666666


Q ss_pred             CCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCC
Q psy16110        553 FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ  632 (719)
Q Consensus       553 ~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  632 (719)
                      +|+++.++...+.     .+++|++|++++|.+++..+..|..+++|++|++++|+++.+++..+..+++|++|++++|.
T Consensus        94 ~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A           94 DNKLQALPIGVFD-----QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ  168 (270)
T ss_dssp             SSCCCCCCTTTTT-----TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCCcCCHhHcc-----cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence            6666665554443     24677777777777777766677777778888888877777777777777888888888888


Q ss_pred             CcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110        633 LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK  683 (719)
Q Consensus       633 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  683 (719)
                      ++++++..|.++++|++|++++|+++++++..|..+++|+.|++++|++.+
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            887777677778888888888888887777777777888888888887764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=9.1e-27  Score=241.94  Aligned_cols=246  Identities=20%  Similarity=0.202  Sum_probs=169.4

Q ss_pred             cCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCC-chhhc-------CCCCccEEEccCCcCCC-CChh
Q psy16110        444 TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP-QYQFD-------ELLNLKYLCLAHNHLTE-IPEM  514 (719)
Q Consensus       444 ~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~-------~~~~L~~L~L~~n~l~~-~~~~  514 (719)
                      ...++|+.|++++| .+ .+|.....   .|+.|++++|.+.... +..+.       ++++|++|++++|.+++ ++..
T Consensus        40 ~~~~~L~~l~l~~n-~l-~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           40 GGGRSLEYLLKRVD-TE-ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEECTTHHHHCC-TT-CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             ccCCCceeEeeccc-cc-ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            34445555666665 33 44432221   2566666666654321 11121       46777777777777764 3333


Q ss_pred             hh-cCCCCCCEEeCCCCccccccCCccCCC-----CCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCc
Q psy16110        515 MF-KNLLNLTYLDLSNNNIVNLRVGSLYGL-----PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYL  588 (719)
Q Consensus       515 ~~-~~l~~L~~L~Ls~n~i~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  588 (719)
                      .| ..+++|++|++++|++++. |..+..+     ++|++|++++|+++.+++..+.     .+++|++|++++|++.+.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-----VFPALSTLDLSDNPELGE  188 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-----CCSSCCEEECCSCTTCHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-----cCCCCCEEECCCCCcCcc
Confidence            22 6677777777777777776 5555555     7788888888887776655554     347888888888877654


Q ss_pred             --CcCc--ccCCCCccEEEcCCCCCCC---cChhhhcCCCCCCEEECCCCCCcccCc-ccCCCCCCCCEEeCCCCcCCCC
Q psy16110        589 --FPSS--FTIHSKLKTLKLAFNKFNY---FPKELILGLSYLQEIDLSNNQLKTIDD-YDYGYLPRLRKLNLNNNNIDAI  660 (719)
Q Consensus       589 --~~~~--~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~  660 (719)
                        .+..  +..+++|++|++++|+++.   ++...+.++++|++|++++|++++..+ ..+..+++|++|++++|+++.+
T Consensus       189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i  268 (312)
T 1wwl_A          189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV  268 (312)
T ss_dssp             HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred             hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence              1222  3778888888888888884   444555678899999999999988653 4566788999999999999877


Q ss_pred             CcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCcee
Q psy16110        661 SETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVF  705 (719)
Q Consensus       661 ~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~  705 (719)
                      +.. +.  ++|++||+++|+++.+|.  |..+++| +|++++|++.
T Consensus       269 p~~-~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          269 PKG-LP--AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CSS-CC--SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTT
T ss_pred             hhh-cc--CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCC
Confidence            654 33  789999999999998865  7889999 9999999884

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.4e-25  Score=244.10  Aligned_cols=235  Identities=23%  Similarity=0.251  Sum_probs=172.0

Q ss_pred             CCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEE
Q psy16110        446 VPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL  525 (719)
Q Consensus       446 l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  525 (719)
                      +++|+.|++++| .++.+++..|..+++|++|++++|.++++++  +..+++|++|++++|.+++++.     .++|++|
T Consensus        33 ~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             CCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            347888888888 6777776667778888888888888776654  6777888888888887776653     2778888


Q ss_pred             eCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCccc-CCCCccEEEc
Q psy16110        526 DLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFT-IHSKLKTLKL  604 (719)
Q Consensus       526 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L  604 (719)
                      ++++|.++++.+.   .+++|++|++++|.++++++..+.     .+++|++|++++|.+++..|..+. .+++|++|+|
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-----CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-----GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-----CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence            8888888776554   346788888888887776555443     247788888888888877666665 6788888888


Q ss_pred             CCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCC-C
Q psy16110        605 AFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE-K  683 (719)
Q Consensus       605 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~  683 (719)
                      ++|.++++++  ...+++|+.|++++|.++++++. +..+++|+.|++++|+++++++. +..+++|+.|++++|++. .
T Consensus       177 s~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          177 QYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             TTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHH
T ss_pred             CCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCc
Confidence            8888877754  34577888888888888877763 77778888888888888876553 667778888888888777 3


Q ss_pred             cChHhhcCcccc-EEecC
Q psy16110        684 LPERLFNTFLYT-NYDMA  700 (719)
Q Consensus       684 i~~~~~~~l~~L-~L~l~  700 (719)
                      ..+.++..++.| .++++
T Consensus       253 ~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          253 TLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHHHHTTCHHHHHHHHH
T ss_pred             chHHHHHhCCCCcEEecc
Confidence            334456777777 77775

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=1.2e-24  Score=227.26  Aligned_cols=206  Identities=21%  Similarity=0.219  Sum_probs=104.7

Q ss_pred             CCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCcc---------C
Q psy16110        471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL---------Y  541 (719)
Q Consensus       471 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l---------~  541 (719)
                      +++|++|++++|.++.++. .++.+++|++|++++|.++.++. .+..+++|++|++++|++.+..|..+         .
T Consensus       103 l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~  180 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQ  180 (328)
T ss_dssp             GTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCCCCCG-GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred             CCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccccCcH-HHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence            4444444444444443332 34445555555555555554443 24455555555555554444434333         2


Q ss_pred             CCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCC
Q psy16110        542 GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLS  621 (719)
Q Consensus       542 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  621 (719)
                      ++++|++|++++|+++.++.. +.     .+++|++|++++|.++++ |..+..+++|++|++++|.+.+..+..+..++
T Consensus       181 ~l~~L~~L~L~~n~l~~lp~~-l~-----~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  253 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIRSLPAS-IA-----NLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRA  253 (328)
T ss_dssp             ESTTCCEEEEEEECCCCCCGG-GG-----GCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred             cCCCCCEEECcCCCcCcchHh-hc-----CCCCCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence            355555555555555544322 11     235555555555555543 33455555555555555555544444455555


Q ss_pred             CCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcC
Q psy16110        622 YLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLP  685 (719)
Q Consensus       622 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~  685 (719)
                      +|++|++++|++.+..+..+.++++|++|++++|++.+..|..+.++++|+.+++..+.+..++
T Consensus       254 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~  317 (328)
T 4fcg_A          254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD  317 (328)
T ss_dssp             CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred             CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence            5666666555555544445555556666666665555555555555566666655555444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=7.9e-26  Score=249.13  Aligned_cols=237  Identities=24%  Similarity=0.273  Sum_probs=143.3

Q ss_pred             CCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEE
Q psy16110        422 YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYL  501 (719)
Q Consensus       422 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L  501 (719)
                      +++|+.|++++|.+.++++..|..+++|++|++++| .+...++  |..+++|++|++++|.+++++.     .++|++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            346666666666666666666666666666666666 4443333  5566666666666666665543     2566666


Q ss_pred             EccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECc
Q psy16110        502 CLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLN  581 (719)
Q Consensus       502 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls  581 (719)
                      ++++|.++.++..   .+++|++|++++|.+++..+..+..+++|++|+|++|.+++..+..+..    .+++|++|+|+
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~----~l~~L~~L~Ls  177 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA----SSDTLEHLNLQ  177 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG----GTTTCCEEECT
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh----hCCcccEEecC
Confidence            6666666665542   3456666666666666666666666666666666666666544433321    23666666666


Q ss_pred             CCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCC-CC
Q psy16110        582 NNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNID-AI  660 (719)
Q Consensus       582 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~  660 (719)
                      +|.+++..+  +..+++|++|+|++|.++++++. +..+++|+.|++++|.+++++. .+..+++|+.|++++|++. +.
T Consensus       178 ~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          178 YNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             TSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCBCHHH
T ss_pred             CCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-hhccCCCCCEEEcCCCCCcCcc
Confidence            666666522  23466666666666666666655 5566666666666666666554 3566666666666666666 23


Q ss_pred             CcccCCCCCCCcEEECC
Q psy16110        661 SETCFFNSSQLQIINLS  677 (719)
Q Consensus       661 ~~~~~~~l~~L~~L~Ls  677 (719)
                      .+..+..++.|+.++++
T Consensus       254 ~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          254 LRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHhCCCCcEEecc
Confidence            33445555566555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.92  E-value=1.5e-24  Score=215.99  Aligned_cols=196  Identities=20%  Similarity=0.341  Sum_probs=162.0

Q ss_pred             cccEEEcCCCCccccCcccccchhccccEEEcCCCc-CCCcCCCCCCcccccCCCCCCEEECcC-CCCcccCcCccCCCc
Q psy16110        165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNL-FGDSLNPIFSTSEFHGLVNLRILDLSD-NQIKAIEEGILKGCD  242 (719)
Q Consensus       165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~  242 (719)
                      ++++|++++|+++.++...|. .+++|++|++++|. ++.     +.+.+|.++++|++|++++ |+++.+++..|.+++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~-~l~~L~~L~l~~n~~l~~-----i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~  105 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFS-NLPNISRIYVSIDVTLQQ-----LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP  105 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTT-TCTTCCEEEEECCSSCCE-----ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred             cccEEEEeCCcceEECHHHcc-CCCCCcEEeCCCCCCcce-----eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence            599999999999999998885 67899999999997 765     3445788999999999998 999999888889999


Q ss_pred             cCcEEECCCCcCCcCCCCCCCCCCCCc---EEEcCCC-cCcccCCCcccCCCccC-EEEccCCCCcccCcccccCcccCc
Q psy16110        243 NLLELRMDHNRFTSIPSVSLNGPRALR---ILSMAYN-RIGTLKADSFLSQRWLE-RIILRGNRLTTIEGGAFNGLAKIH  317 (719)
Q Consensus       243 ~L~~L~L~~n~l~~i~~~~l~~l~~L~---~L~Ls~n-~i~~~~~~~~~~l~~L~-~L~Ls~n~i~~~~~~~~~~l~~L~  317 (719)
                      +|++|++++|.++.+|.  +..+++|+   +|++++| .++.+++..|..+++|+ +|++++|.++.+++.+|.. ++|+
T Consensus       106 ~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~  182 (239)
T 2xwt_C          106 LLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLD  182 (239)
T ss_dssp             TCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEE
T ss_pred             CCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCC
Confidence            99999999999998885  77888888   9999999 88888888888888898 9999999888887777766 7888


Q ss_pred             EEEcCCCC-CCCcCCCccccccccCC-CCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCC
Q psy16110        318 ILNLGYNR-LNKLNSDTFQGGAFNGL-AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN  388 (719)
Q Consensus       318 ~L~L~~n~-l~~~~~~~~~~~~l~~l-~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n  388 (719)
                      +|++++|+ ++.++..     .|..+ ++|+.|++++|+++.++..              .+++|+.|+++++
T Consensus       183 ~L~L~~n~~l~~i~~~-----~~~~l~~~L~~L~l~~N~l~~l~~~--------------~~~~L~~L~l~~~  236 (239)
T 2xwt_C          183 AVYLNKNKYLTVIDKD-----AFGGVYSGPSLLDVSQTSVTALPSK--------------GLEHLKELIARNT  236 (239)
T ss_dssp             EEECTTCTTCCEECTT-----TTTTCSBCCSEEECTTCCCCCCCCT--------------TCTTCSEEECTTC
T ss_pred             EEEcCCCCCcccCCHH-----HhhccccCCcEEECCCCccccCChh--------------HhccCceeeccCc
Confidence            88888884 8877765     35566 7888888888888766533              2556777777765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=2.9e-24  Score=224.41  Aligned_cols=230  Identities=20%  Similarity=0.203  Sum_probs=195.8

Q ss_pred             CCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEE
Q psy16110        471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLD  550 (719)
Q Consensus       471 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  550 (719)
                      .+.++.|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|++|++++|+++.+ |..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRAL-PASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccccC-cHHHhcCcCCCEEE
Confidence            36788888888888888764 5669999999999999998875 478899999999999999954 77899999999999


Q ss_pred             ccCCcCCcccCCcCCC----CCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEE
Q psy16110        551 LSFNKLTTFKGDYFNT----KSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEI  626 (719)
Q Consensus       551 L~~n~l~~~~~~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  626 (719)
                      +++|++.+..+..+..    ..+..+++|++|++++|.++. +|..+..+++|++|++++|+++++++. +..+++|++|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEE
Confidence            9997655433332211    112236999999999999995 477899999999999999999999875 8899999999


Q ss_pred             ECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCC-CcChHhhcCcccc-EEecCCCce
Q psy16110        627 DLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE-KLPERLFNTFLYT-NYDMAPNLV  704 (719)
Q Consensus       627 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L-~L~l~~N~l  704 (719)
                      ++++|++.+..+..+.++++|++|++++|++.+..|..+..+++|++|+|++|++. .+|. .|.+++.| .+++..|.+
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEECCGGGS
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEEeCCHHHH
Confidence            99999999888888999999999999999999988888999999999999999766 5554 67899999 999998877


Q ss_pred             ee
Q psy16110        705 FQ  706 (719)
Q Consensus       705 ~~  706 (719)
                      ..
T Consensus       314 ~~  315 (328)
T 4fcg_A          314 AQ  315 (328)
T ss_dssp             CC
T ss_pred             HH
Confidence            44

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=8.3e-26  Score=234.69  Aligned_cols=206  Identities=20%  Similarity=0.177  Sum_probs=100.4

Q ss_pred             CCcCcEEeCcCCCCCCCCCCCCC-CCCCCccEEEcCCCCCCCCCchhhcCC-----CCccEEEccCCcCCCCChhhhcCC
Q psy16110        446 VPTLLHLNLSRNAHLSSLPVGGF-DPLKKLEVLDLAATGLKSIPQYQFDEL-----LNLKYLCLAHNHLTEIPEMMFKNL  519 (719)
Q Consensus       446 l~~L~~L~L~~n~~l~~l~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~l  519 (719)
                      +++|++|++++|...+.+|...| ..+++|++|++++|++++++ ..+..+     ++|++|++++|+++.+++..|..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            44555555555522223333322 44455555555555555442 233333     455555555555555554445555


Q ss_pred             CCCCEEeCCCCccccc--cCC--ccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccC
Q psy16110        520 LNLTYLDLSNNNIVNL--RVG--SLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTI  595 (719)
Q Consensus       520 ~~L~~L~Ls~n~i~~~--~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  595 (719)
                      ++|++|++++|++.+.  .+.  .+..+++|++|++++|+++.++                          ......+..
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------------------~~~~~~~~~  226 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS--------------------------GVCSALAAA  226 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH--------------------------HHHHHHHHT
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH--------------------------HHHHHHHhc
Confidence            5555555555554332  111  1234444444444444444221                          111122234


Q ss_pred             CCCccEEEcCCCCCCCcC-hhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEE
Q psy16110        596 HSKLKTLKLAFNKFNYFP-KELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQII  674 (719)
Q Consensus       596 l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  674 (719)
                      +++|++|++++|++++.+ ...+..+++|++|++++|+++.++.. +.  ++|++|++++|++++++.  +..+++|++|
T Consensus       227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L  301 (312)
T 1wwl_A          227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG-LP--AKLSVLDLSYNRLDRNPS--PDELPQVGNL  301 (312)
T ss_dssp             TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS-CC--SEEEEEECCSSCCCSCCC--TTTSCEEEEE
T ss_pred             CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh-cc--CCceEEECCCCCCCCChh--HhhCCCCCEE
Confidence            455555555555555433 12334455666666666666655442 22  566666666666666632  5566666666


Q ss_pred             ECCCCcCCC
Q psy16110        675 NLSFNRLEK  683 (719)
Q Consensus       675 ~Ls~N~l~~  683 (719)
                      ++++|+++.
T Consensus       302 ~L~~N~l~~  310 (312)
T 1wwl_A          302 SLKGNPFLD  310 (312)
T ss_dssp             ECTTCTTTC
T ss_pred             eccCCCCCC
Confidence            666666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=5.7e-23  Score=210.50  Aligned_cols=204  Identities=24%  Similarity=0.246  Sum_probs=151.0

Q ss_pred             CCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCC
Q psy16110        468 FDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK  547 (719)
Q Consensus       468 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~  547 (719)
                      +..+++++++++++++++.++...   .++++.|++++|.++.++...|..+++|++|++++|.++++.+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            344556666666666666666432   24667777777777766666677777777777777777766443  5677788


Q ss_pred             EEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEE
Q psy16110        548 RLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID  627 (719)
Q Consensus       548 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  627 (719)
                      +|++++|+++.++...      ..+++|++|++++|+++++.+..|..+++|++|++++|+++.+++..|..+++|+.|+
T Consensus        81 ~L~Ls~N~l~~l~~~~------~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           81 TLDLSHNQLQSLPLLG------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (290)
T ss_dssp             EEECCSSCCSSCCCCT------TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEECCCCcCCcCchhh------ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence            8888888777665322      2357888888888888888777788888888888888888888887778888888888


Q ss_pred             CCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110        628 LSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK  683 (719)
Q Consensus       628 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  683 (719)
                      +++|+++++++..|.++++|++|++++|+++.++.. +...++|+.|+|++|++.+
T Consensus       155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBCC
T ss_pred             CCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh-hcccccCCeEEeCCCCccC
Confidence            888888888877778888888888888888877665 4456788888888888764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=1.1e-27  Score=272.28  Aligned_cols=33  Identities=6%  Similarity=0.109  Sum_probs=20.4

Q ss_pred             ccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCC
Q psy16110        191 LQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQ  229 (719)
Q Consensus       191 L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  229 (719)
                      -+.++++.+...      .....+..+++|++|+++++.
T Consensus        45 ~~~l~~~~~~~~------~~~~~~~~~~~L~~L~L~~~~   77 (594)
T 2p1m_B           45 RRKVFIGNCYAV------SPATVIRRFPKVRSVELKGKP   77 (594)
T ss_dssp             CCEEEESSTTSS------CHHHHHHHCTTCCEEEEECSC
T ss_pred             ceEEeecccccc------CHHHHHhhCCCceEEeccCCC
Confidence            346666654322      112346677888888888875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.90  E-value=2.5e-23  Score=219.56  Aligned_cols=247  Identities=21%  Similarity=0.269  Sum_probs=186.6

Q ss_pred             CCc-ccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcc
Q psy16110        104 FPY-PCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDK  182 (719)
Q Consensus       104 ~~~-~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~  182 (719)
                      ||. .|+|..     ..|+|.+..++     +||.                   .++    .++++|+|++|+|+.||..
T Consensus         2 Cp~~~C~C~~-----~~v~C~~~~Lt-----~iP~-------------------~l~----~~l~~L~Ls~N~i~~i~~~   48 (350)
T 4ay9_X            2 CHHRICHCSN-----RVFLCQESKVT-----EIPS-------------------DLP----RNAIELRFVLTKLRVIQKG   48 (350)
T ss_dssp             CCCSSSEEET-----TEEEEESTTCC-----SCCT-------------------TCC----TTCSEEEEESCCCSEECTT
T ss_pred             CCCCccEeeC-----CEEEecCCCCC-----ccCc-------------------CcC----CCCCEEEccCCcCCCcCHH
Confidence            454 499973     57899876665     3443                   332    2599999999999999999


Q ss_pred             cccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCE-EECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCC
Q psy16110        183 LFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRI-LDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS  261 (719)
Q Consensus       183 ~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~  261 (719)
                      +|. .+++|++|+|++|.+.+.++    ..+|.++++++. +.+++|+++.+++++|.++++|++|++++|+++.+++..
T Consensus        49 ~f~-~l~~L~~L~Ls~N~i~~~i~----~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~  123 (350)
T 4ay9_X           49 AFS-GFGDLEKIEISQNDVLEVIE----ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH  123 (350)
T ss_dssp             SST-TCTTCCEEEEECCTTCCEEC----TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCT
T ss_pred             HHc-CCCCCCEEECcCCCCCCccC----hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchh
Confidence            996 67899999999999876544    367889988875 667778999999989999999999999999999998877


Q ss_pred             CCCCCCCcEEEcCC-CcCcccCCCcccCCC-ccCEEEccCCCCcccCcccccCcccCcEEEcC-CCCCCCcCCCcccccc
Q psy16110        262 LNGPRALRILSMAY-NRIGTLKADSFLSQR-WLERIILRGNRLTTIEGGAFNGLAKIHILNLG-YNRLNKLNSDTFQGGA  338 (719)
Q Consensus       262 l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~  338 (719)
                      +....++..|++.+ +.+..+.+..|..+. .++.|++++|+++.+.+.+|. ..+|++|++. +|.++.++.+     +
T Consensus       124 ~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~-----~  197 (350)
T 4ay9_X          124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPND-----V  197 (350)
T ss_dssp             TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTT-----T
T ss_pred             hcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHH-----H
Confidence            77788888888865 678888877777764 588899999999988877665 4578888886 5778888776     4


Q ss_pred             ccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCC-CCcCcCCcchhccCCEEEcc
Q psy16110        339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN-FLINLESTGLEDTLDNLNVR  408 (719)
Q Consensus       339 l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~L~~L~l~  408 (719)
                      |..+++|++|++++|+++.++...|              .+|+.|.+.++ .+..+|....+++|+.+++.
T Consensus       198 f~~l~~L~~LdLs~N~l~~lp~~~~--------------~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~  254 (350)
T 4ay9_X          198 FHGASGPVILDISRTRIHSLPSYGL--------------ENLKKLRARSTYNLKKLPTLEKLVALMEASLT  254 (350)
T ss_dssp             TTTEECCSEEECTTSCCCCCCSSSC--------------TTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred             hccCcccchhhcCCCCcCccChhhh--------------ccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence            5667888888888888887765433              34555655443 44555544444455555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=5.7e-27  Score=266.50  Aligned_cols=178  Identities=11%  Similarity=0.098  Sum_probs=95.0

Q ss_pred             CEEECcCCCCcccCcCccCCCccCcEEECCCCcC-CcC---CCC-----------CCCCCCCCcEEEcCCCcCcccCCCc
Q psy16110        221 RILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF-TSI---PSV-----------SLNGPRALRILSMAYNRIGTLKADS  285 (719)
Q Consensus       221 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~i---~~~-----------~l~~l~~L~~L~Ls~n~i~~~~~~~  285 (719)
                      +.++++++... .+...+..+++|++|+++++.. ..+   |..           ....+++|++|++++|.++......
T Consensus        46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~  124 (594)
T 2p1m_B           46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL  124 (594)
T ss_dssp             CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred             eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence            45666554322 2333466788899999988752 222   111           0124567777777777766554444


Q ss_pred             cc-CCCccCEEEccCC-CCcccC-cccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCcccccc
Q psy16110        286 FL-SQRWLERIILRGN-RLTTIE-GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDT  362 (719)
Q Consensus       286 ~~-~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~  362 (719)
                      +. .+++|++|++++| .++... +..+.++++|++|++++|.+++.....+.. ....+++|++|++++|. ..++.. 
T Consensus       125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~-~~~~~~~L~~L~l~~~~-~~~~~~-  201 (594)
T 2p1m_B          125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH-FPDTYTSLVSLNISCLA-SEVSFS-  201 (594)
T ss_dssp             HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG-SCTTCCCCCEEECTTCC-SCCCHH-
T ss_pred             HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH-HhhcCCcCcEEEecccC-CcCCHH-
Confidence            43 5677777777777 343321 222345677777777777766544433322 22355677777777665 222211 


Q ss_pred             ccCcccccccccccCCCccEEECCCC-CCcCcCC-cchhccCCEEEcc
Q psy16110        363 FQGTHITIFSFFQDFQKLKSLDLNGN-FLINLES-TGLEDTLDNLNVR  408 (719)
Q Consensus       363 f~~~~~~~~~~l~~~~~L~~L~L~~n-~l~~~~~-~~~~~~L~~L~l~  408 (719)
                            .+......+++|++|++++| .+..++. ...+++|++|+++
T Consensus       202 ------~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          202 ------ALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             ------HHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred             ------HHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence                  11222234566777777666 2222222 2233455555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=2.6e-23  Score=207.10  Aligned_cols=196  Identities=23%  Similarity=0.320  Sum_probs=115.6

Q ss_pred             CccEEEcCCCCCCCCCchhhcCCCCccEEEccCCc-CCCCChhhhcCCCCCCEEeCCC-CccccccCCccCCCCCCCEEE
Q psy16110        473 KLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNH-LTEIPEMMFKNLLNLTYLDLSN-NNIVNLRVGSLYGLPSMKRLD  550 (719)
Q Consensus       473 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~  550 (719)
                      ++++|++++|+++.++...|.++++|++|++++|. ++.++...|..+++|++|++++ |+++.+.+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666666666566666666666666664 6666665566666666666666 666666555666666666666


Q ss_pred             ccCCcCCcccCCcCCCCCCCCCCCCc---EEECcCC-CCCCcCcCcccCCCCcc-EEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110        551 LSFNKLTTFKGDYFNTKSKPNTSSLE---ELNLNNN-ELTYLFPSSFTIHSKLK-TLKLAFNKFNYFPKELILGLSYLQE  625 (719)
Q Consensus       551 L~~n~l~~~~~~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~  625 (719)
                      +++|++++++.  +.     .+++|+   +|++++| .++++.+..|..+++|+ +|++++|+++.++...+.. ++|+.
T Consensus       112 l~~n~l~~lp~--~~-----~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~  183 (239)
T 2xwt_C          112 IFNTGLKMFPD--LT-----KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDA  183 (239)
T ss_dssp             EEEECCCSCCC--CT-----TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEE
T ss_pred             CCCCCCccccc--cc-----cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCE
Confidence            66666655443  21     224444   6666666 56655555556666666 6666666666555554444 55666


Q ss_pred             EECCCCC-CcccCcccCCCC-CCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCC
Q psy16110        626 IDLSNNQ-LKTIDDYDYGYL-PRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN  679 (719)
Q Consensus       626 L~Ls~n~-l~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  679 (719)
                      |++++|+ ++++++..|.++ ++|++|++++|+++++++.   .+++|+.|+++++
T Consensus       184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             EEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            6666663 555555555555 5666666666666555543   2445555555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.6e-23  Score=212.83  Aligned_cols=206  Identities=27%  Similarity=0.359  Sum_probs=102.2

Q ss_pred             cCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCC
Q psy16110        444 TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT  523 (719)
Q Consensus       444 ~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  523 (719)
                      ..+++|+.|++++| .++.++.  +..+++|++|++++|.+++++  .+..+++|++|++++|.++.++...|..+++|+
T Consensus        38 ~~l~~L~~L~l~~~-~i~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           38 NELNSIDQIIANNS-DIKSVQG--IQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHTTCCEEECTTS-CCCCCTT--GGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccccceeeeeeCCC-Ccccccc--cccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            34445555555555 3443332  344455555555555554432  344555555555555555555554455555555


Q ss_pred             EEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEE
Q psy16110        524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK  603 (719)
Q Consensus       524 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  603 (719)
                      +|++++|+++++.+..+..+++|++|++++|++++++...+.     .+++|++|++++|.+++..+..+..+++|++|+
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD-----KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc-----cCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence            555555555555444455555555555555555544433332     234555555555555554444445555555555


Q ss_pred             cCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCC
Q psy16110        604 LAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFF  666 (719)
Q Consensus       604 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  666 (719)
                      +++|+++++++..+..+++|+.|++++|.+.       +.++.|+.++++.|.+++..|..++
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCccc
Confidence            5555555555444455555555555555443       1233444555555555544443333

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=2.5e-22  Score=201.44  Aligned_cols=181  Identities=26%  Similarity=0.376  Sum_probs=159.6

Q ss_pred             CCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCC
Q psy16110        496 LNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSL  575 (719)
Q Consensus       496 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L  575 (719)
                      ...++++++++.++.+|...   .+++++|++++|+++++.+..|.++++|++|++++|.++++++..+.     .+++|
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L   85 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-----DLTEL   85 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-----TCTTC
T ss_pred             CCCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-----cCCcC
Confidence            45788999999999988743   36899999999999998888899999999999999999887766654     35899


Q ss_pred             cEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCC
Q psy16110        576 EELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN  655 (719)
Q Consensus       576 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N  655 (719)
                      ++|++++|.+++..+..|..+++|++|++++|+++.+++..+..+++|++|++++|+++++++..|.++++|++|+|++|
T Consensus        86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  165 (251)
T 3m19_A           86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN  165 (251)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence            99999999999988888899999999999999999999888888999999999999999988878889999999999999


Q ss_pred             cCCCCCcccCCCCCCCcEEECCCCcCCCc
Q psy16110        656 NIDAISETCFFNSSQLQIINLSFNRLEKL  684 (719)
Q Consensus       656 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i  684 (719)
                      +++++++..|..+++|++|++++|++++-
T Consensus       166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          166 QLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999888888899999999999998864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.4e-22  Score=205.92  Aligned_cols=212  Identities=26%  Similarity=0.391  Sum_probs=161.8

Q ss_pred             CCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCC
Q psy16110        468 FDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK  547 (719)
Q Consensus       468 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~  547 (719)
                      ...+++|+.|++++|.++.++  .+..+++|++|++++|.++.++  .+..+++|++|++++|.++++.+..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            345678888888888887765  3677888888888888887764  467788888888888888887777788888888


Q ss_pred             EEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEE
Q psy16110        548 RLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID  627 (719)
Q Consensus       548 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  627 (719)
                      +|++++|+++.+++..+.     .+++|++|++++|.+++..+..+..+++|++|++++|+++++++..+..+++|++|+
T Consensus       113 ~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFD-----KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             EEECTTSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEECCCCcCCccCHHHhc-----cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence            888888888877665554     347888888888888887777778888888888888888888877777888888888


Q ss_pred             CCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc
Q psy16110        628 LSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT  695 (719)
Q Consensus       628 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L  695 (719)
                      +++|+++++++..+..+++|++|++++|++.+.       +++|+.++++.|.++...+..+..+...
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCCC
Confidence            888888888777778888888888888876643       4577888888887773333334444433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=1.9e-22  Score=208.76  Aligned_cols=210  Identities=22%  Similarity=0.328  Sum_probs=140.4

Q ss_pred             EccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcC
Q psy16110        429 DLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHL  508 (719)
Q Consensus       429 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l  508 (719)
                      .+..+.+.++.  .+..+++|++|++++| .+..++.  +..+++|++|++++|.++.++.  +..+++|++|++++|.+
T Consensus        25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l   97 (308)
T 1h6u_A           25 AAGKSNVTDTV--TQADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (308)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HhCCCCcCcee--cHHHcCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC
Confidence            34444444432  2345677888888887 6666653  6677778888888877777765  67777777777777777


Q ss_pred             CCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCc
Q psy16110        509 TEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYL  588 (719)
Q Consensus       509 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  588 (719)
                      +.++  .+..+++|++|++++|+++++.  .+..+++|++|++++|++++++.  +     ..+++|++|++++|.+++.
T Consensus        98 ~~~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l-----~~l~~L~~L~l~~n~l~~~  166 (308)
T 1h6u_A           98 KNVS--AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--L-----AGLTNLQYLSIGNAQVSDL  166 (308)
T ss_dssp             SCCG--GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--G-----GGCTTCCEEECCSSCCCCC
T ss_pred             CCch--hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--c-----cCCCCccEEEccCCcCCCC
Confidence            7764  3667777777777777777653  26677777777777777766543  2     2346677777777777665


Q ss_pred             CcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110        589 FPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE  662 (719)
Q Consensus       589 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~  662 (719)
                      .+  +..+++|++|++++|+++++++  +..+++|++|++++|+++++++  +..+++|+.|++++|++++.+.
T Consensus       167 ~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          167 TP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred             hh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence            33  6666777777777777766654  5666677777777777666653  5666677777777776665543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.6e-21  Score=195.54  Aligned_cols=181  Identities=27%  Similarity=0.398  Sum_probs=160.3

Q ss_pred             CCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEc
Q psy16110        472 KKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDL  551 (719)
Q Consensus       472 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  551 (719)
                      ...++++++++.++.++...   .++++.|++++|.++.++...|..+++|++|++++|+++++.+..|..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45778999999999888643   268999999999999998888899999999999999999988888999999999999


Q ss_pred             cCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCC
Q psy16110        552 SFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN  631 (719)
Q Consensus       552 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  631 (719)
                      ++|+++.++...+..     +++|++|++++|.++++.+..|..+++|++|++++|+++.+++..+..+++|++|++++|
T Consensus        91 ~~n~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  165 (251)
T 3m19_A           91 ANNQLASLPLGVFDH-----LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN  165 (251)
T ss_dssp             TTSCCCCCCTTTTTT-----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCcccccChhHhcc-----cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence            999999887766643     589999999999999988888899999999999999999999888899999999999999


Q ss_pred             CCcccCcccCCCCCCCCEEeCCCCcCCCC
Q psy16110        632 QLKTIDDYDYGYLPRLRKLNLNNNNIDAI  660 (719)
Q Consensus       632 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  660 (719)
                      +++++++..+..+++|++|++++|++++.
T Consensus       166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          166 QLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999888889999999999999999876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=5.6e-22  Score=205.12  Aligned_cols=201  Identities=28%  Similarity=0.399  Sum_probs=175.7

Q ss_pred             CCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCC
Q psy16110        468 FDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK  547 (719)
Q Consensus       468 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~  547 (719)
                      +..+++|+.|++++|.++.++  .+..+++|++|++++|.++.++.  +..+++|++|++++|++++..  .+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCC
Confidence            355789999999999999886  47889999999999999998887  888999999999999998863  688999999


Q ss_pred             EEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEE
Q psy16110        548 RLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID  627 (719)
Q Consensus       548 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  627 (719)
                      +|++++|++++++.  +     ..+++|++|++++|.+++..+  +..+++|++|++++|+++.+++  +..+++|++|+
T Consensus       111 ~L~l~~n~l~~~~~--l-----~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~  179 (308)
T 1h6u_A          111 TLDLTSTQITDVTP--L-----AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK  179 (308)
T ss_dssp             EEECTTSCCCCCGG--G-----TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             EEECCCCCCCCchh--h-----cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEE
Confidence            99999999987653  2     346999999999999998754  8899999999999999998876  78999999999


Q ss_pred             CCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhh
Q psy16110        628 LSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF  689 (719)
Q Consensus       628 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~  689 (719)
                      +++|.++++++  +..+++|++|++++|+++++++  +..+++|+.|++++|+++..|....
T Consensus       180 l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~~~~  237 (308)
T 1h6u_A          180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYN  237 (308)
T ss_dssp             CCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCEECC
T ss_pred             CCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCeeec
Confidence            99999998876  7889999999999999998874  7889999999999999988776443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.87  E-value=2.5e-22  Score=211.98  Aligned_cols=240  Identities=23%  Similarity=0.298  Sum_probs=158.9

Q ss_pred             CEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccE-EEcCC
Q psy16110        403 DNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEV-LDLAA  481 (719)
Q Consensus       403 ~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~-L~ls~  481 (719)
                      +.++.++++++.+|..+  .+++++|+|++|+|+.+++.+|.++++|++|+|++|...+.++..+|.+++++++ +.++.
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            34455555555555433  3467777777777777776677777777777777774445666666777776654 45556


Q ss_pred             CCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCC-CccccccCCccCCCC-CCCEEEccCCcCCcc
Q psy16110        482 TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN-NNIVNLRVGSLYGLP-SMKRLDLSFNKLTTF  559 (719)
Q Consensus       482 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~-~L~~L~L~~n~l~~~  559 (719)
                      |+++.+++..|..+++|++|++++|+++.++...+....++..+++.+ +++..+.+..|..+. .++.|++++|+++.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            777777777777777777777777777777766666666677777754 566666666666654 577777777777777


Q ss_pred             cCCcCCCCCCCCCCCCcEEECcC-CCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCC-CCcccC
Q psy16110        560 KGDYFNTKSKPNTSSLEELNLNN-NELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN-QLKTID  637 (719)
Q Consensus       560 ~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~  637 (719)
                      +...|..      .+|++|++++ |.++.+.+.+|..+++|++|++++|+++.+|+..+   .+|+.|.+.++ .+..++
T Consensus       170 ~~~~f~~------~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          170 HNSAFNG------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             CTTSSTT------EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC
T ss_pred             Chhhccc------cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC
Confidence            6666542      5677777764 56666666677777778888888877777776544   44555554443 344554


Q ss_pred             cccCCCCCCCCEEeCCCC
Q psy16110        638 DYDYGYLPRLRKLNLNNN  655 (719)
Q Consensus       638 ~~~l~~l~~L~~L~Ls~N  655 (719)
                      +  +.++++|+.++++++
T Consensus       241 ~--l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          241 T--LEKLVALMEASLTYP  256 (350)
T ss_dssp             C--TTTCCSCCEEECSCH
T ss_pred             C--chhCcChhhCcCCCC
Confidence            3  677777777777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.4e-23  Score=222.81  Aligned_cols=254  Identities=17%  Similarity=0.170  Sum_probs=139.9

Q ss_pred             EEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCC----CCCCCCC-CccEEEcCCCCCCCCCchhhcCC-----CC
Q psy16110        428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPV----GGFDPLK-KLEVLDLAATGLKSIPQYQFDEL-----LN  497 (719)
Q Consensus       428 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~----~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~-----~~  497 (719)
                      ++++.|.+++..+..+...++|++|++++| .++..+.    ..|..++ +|++|++++|.++......+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            344555555544444444444555555555 4444443    3344444 56666666666555544444432     66


Q ss_pred             ccEEEccCCcCCCCChhh----hcCC-CCCCEEeCCCCccccccCCc----cCC-CCCCCEEEccCCcCCcccCCcCCCC
Q psy16110        498 LKYLCLAHNHLTEIPEMM----FKNL-LNLTYLDLSNNNIVNLRVGS----LYG-LPSMKRLDLSFNKLTTFKGDYFNTK  567 (719)
Q Consensus       498 L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~Ls~n~i~~~~~~~----l~~-l~~L~~L~L~~n~l~~~~~~~~~~~  567 (719)
                      |++|++++|.++......    +..+ ++|++|++++|++++..+..    +.. .++|++|+|++|.+++.....+...
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            666666666666555432    3333 56666666666666544332    223 2466666666666654322211000


Q ss_pred             CCCCC-CCCcEEECcCCCCCCcCcCc----ccCC-CCccEEEcCCCCCCCcChh----hhcC-CCCCCEEECCCCCCccc
Q psy16110        568 SKPNT-SSLEELNLNNNELTYLFPSS----FTIH-SKLKTLKLAFNKFNYFPKE----LILG-LSYLQEIDLSNNQLKTI  636 (719)
Q Consensus       568 ~~~~l-~~L~~L~Ls~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~----~l~~-l~~L~~L~Ls~n~l~~~  636 (719)
                       +..+ ++|++|++++|++++..+..    +..+ ++|++|+|++|.++.....    .+.. .++|++|++++|.+++.
T Consensus       162 -l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          162 -LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             -HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             -HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence             0011 36777777777776654433    3334 4777777777777763222    2222 45777777777777654


Q ss_pred             Cc----ccCCCCCCCCEEeCCCCcCCCCCcc-------cCCCCCCCcEEECCCCcCCC
Q psy16110        637 DD----YDYGYLPRLRKLNLNNNNIDAISET-------CFFNSSQLQIINLSFNRLEK  683 (719)
Q Consensus       637 ~~----~~l~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~Ls~N~l~~  683 (719)
                      +.    ..+..+++|++|++++|++.++.+.       .+..+++|+.||+++|++..
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            43    2346667777777777775555432       45666777777777777764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.8e-22  Score=209.36  Aligned_cols=202  Identities=20%  Similarity=0.186  Sum_probs=140.6

Q ss_pred             CCCccEEEccCCcCCCCChhhh--cCCCCCCEEeCCCCccccccC----CccCCCCCCCEEEccCCcCCcccCCcCCCCC
Q psy16110        495 LLNLKYLCLAHNHLTEIPEMMF--KNLLNLTYLDLSNNNIVNLRV----GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKS  568 (719)
Q Consensus       495 ~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  568 (719)
                      .++|++|++++|.+.+..+..+  ..+++|++|++++|++++..+    ..+..+++|++|++++|+++.+++..+.   
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~---  166 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR---  166 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC---
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc---
Confidence            3457777777777665554444  666777777777777665332    2334667777777777777666655543   


Q ss_pred             CCCCCCCcEEECcCCCCCCc---C-cCcccCCCCccEEEcCCCCCCCcChh---hhcCCCCCCEEECCCCCCcccCcccC
Q psy16110        569 KPNTSSLEELNLNNNELTYL---F-PSSFTIHSKLKTLKLAFNKFNYFPKE---LILGLSYLQEIDLSNNQLKTIDDYDY  641 (719)
Q Consensus       569 ~~~l~~L~~L~Ls~n~l~~~---~-~~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~l  641 (719)
                        .+++|++|++++|++.+.   . +..+..+++|++|++++|+++.++..   .+.++++|++|++++|++++..+..+
T Consensus       167 --~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~  244 (310)
T 4glp_A          167 --AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA  244 (310)
T ss_dssp             --CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred             --cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence              347777777777776542   1 22346778888888888888765542   34677888888888888888754455


Q ss_pred             CCC---CCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceee
Q psy16110        642 GYL---PRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQ  706 (719)
Q Consensus       642 ~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~  706 (719)
                      ..+   ++|++|++++|+++.++.. +.  ++|++|||++|+++.+|.  +..++.| .|++++|++.+
T Consensus       245 ~~~~~~~~L~~L~Ls~N~l~~lp~~-~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFAGLEQVPKG-LP--AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SSCCCCTTCCCEECCSSCCCSCCSC-CC--SCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred             HhccCcCcCCEEECCCCCCCchhhh-hc--CCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence            555   6888888888888877554 32  788888888888888765  6778888 88888888843

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=2e-23  Score=221.52  Aligned_cols=254  Identities=20%  Similarity=0.168  Sum_probs=196.6

Q ss_pred             EEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCc----hhhcCCC-CccEEEccCCcCCCCChhhhcCC-----C
Q psy16110        451 HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ----YQFDELL-NLKYLCLAHNHLTEIPEMMFKNL-----L  520 (719)
Q Consensus       451 ~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~----~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l-----~  520 (719)
                      .++++.| .+....+..+...++|++|++++|.++..+.    ..+..++ +|++|++++|.++......+..+     +
T Consensus         2 ~~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            3567777 4444433444556679999999999999887    7788888 89999999999998877666654     9


Q ss_pred             CCCEEeCCCCccccccCCc----cCCC-CCCCEEEccCCcCCcccCCcCCCCCCCC-CCCCcEEECcCCCCCCcCc----
Q psy16110        521 NLTYLDLSNNNIVNLRVGS----LYGL-PSMKRLDLSFNKLTTFKGDYFNTKSKPN-TSSLEELNLNNNELTYLFP----  590 (719)
Q Consensus       521 ~L~~L~Ls~n~i~~~~~~~----l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~----  590 (719)
                      +|++|++++|++++..+..    +..+ ++|++|++++|++++.+...+... +.. .++|++|++++|.+++...    
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA-FSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH-HTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH-HHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            9999999999998876553    4444 899999999999987665433210 111 2689999999999986533    


Q ss_pred             CcccCCC-CccEEEcCCCCCCCcChhh----hcCC-CCCCEEECCCCCCcccCcc----cCCC-CCCCCEEeCCCCcCCC
Q psy16110        591 SSFTIHS-KLKTLKLAFNKFNYFPKEL----ILGL-SYLQEIDLSNNQLKTIDDY----DYGY-LPRLRKLNLNNNNIDA  659 (719)
Q Consensus       591 ~~~~~l~-~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~Ls~n~l~~~~~~----~l~~-l~~L~~L~Ls~N~l~~  659 (719)
                      ..+..++ +|++|++++|+++...+..    +..+ ++|++|||++|.+++....    .+.. .++|++|+|++|++++
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            3345555 9999999999999887643    3445 6999999999999973221    3333 4699999999999998


Q ss_pred             CCc----ccCCCCCCCcEEECCCCcCCCcChH-------hhcCcccc-EEecCCCceee
Q psy16110        660 ISE----TCFFNSSQLQIINLSFNRLEKLPER-------LFNTFLYT-NYDMAPNLVFQ  706 (719)
Q Consensus       660 ~~~----~~~~~l~~L~~L~Ls~N~l~~i~~~-------~~~~l~~L-~L~l~~N~l~~  706 (719)
                      ...    ..+..+++|++|++++|.+..+.+.       .+..+++| .+++++|++..
T Consensus       240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            765    3457789999999999997766654       46678889 99999999854

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=7.4e-21  Score=186.36  Aligned_cols=155  Identities=22%  Similarity=0.359  Sum_probs=128.3

Q ss_pred             CEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEE
Q psy16110        547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEI  626 (719)
Q Consensus       547 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  626 (719)
                      +.++++++.++.+|....        +++++|++++|.++++.+..|..+++|++|+|++|+++.+.+..|.++++|++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~--------~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L   85 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL   85 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--------TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEE
T ss_pred             CEEEcCCCCcCcCCCccC--------cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEE
Confidence            567777777777765432        568888888888888877788888888888888888888877778888888888


Q ss_pred             ECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCcee
Q psy16110        627 DLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVF  705 (719)
Q Consensus       627 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~  705 (719)
                      +|++|+++.+++..|.++++|++|+|++|+++++++..|..+++|++|+|++|+++.+++..|..+++| +|++++|++ 
T Consensus        86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~-  164 (220)
T 2v9t_B           86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF-  164 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE-
T ss_pred             ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc-
Confidence            888888888888778888888888888888888888888888888888888888888888888888888 888888888 


Q ss_pred             eeccCCCccccC
Q psy16110        706 QSHLSGHRCECA  717 (719)
Q Consensus       706 ~~~~~~~~C~c~  717 (719)
                             .|+|+
T Consensus       165 -------~c~c~  169 (220)
T 2v9t_B          165 -------ICDCH  169 (220)
T ss_dssp             -------ECSGG
T ss_pred             -------CCCCc
Confidence                   77775

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.2e-21  Score=203.09  Aligned_cols=201  Identities=25%  Similarity=0.244  Sum_probs=101.8

Q ss_pred             CcCcEEeCcCCCCCCCCCCCCC-CCCCCccEEEcCCCCCCCCCc----hhhcCCCCccEEEccCCcCCCCChhhhcCCCC
Q psy16110        447 PTLLHLNLSRNAHLSSLPVGGF-DPLKKLEVLDLAATGLKSIPQ----YQFDELLNLKYLCLAHNHLTEIPEMMFKNLLN  521 (719)
Q Consensus       447 ~~L~~L~L~~n~~l~~l~~~~~-~~l~~L~~L~ls~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  521 (719)
                      ++|++|++++|...+..+...+ ..+++|++|++++|.+....+    ..+..+++|++|++++|.+..++...|..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            4456666666522223332222 555666666666666654221    23345666777777777776666666666677


Q ss_pred             CCEEeCCCCcccc---cc-CCccCCCCCCCEEEccCCcCCcccCC---cCCCCCCCCCCCCcEEECcCCCCCCcCcCccc
Q psy16110        522 LTYLDLSNNNIVN---LR-VGSLYGLPSMKRLDLSFNKLTTFKGD---YFNTKSKPNTSSLEELNLNNNELTYLFPSSFT  594 (719)
Q Consensus       522 L~~L~Ls~n~i~~---~~-~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  594 (719)
                      |++|++++|++.+   .. +..+..+++|++|++++|+++.++..   .+.     .+++|++|++++|++++..|..+.
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~-----~l~~L~~L~Ls~N~l~~~~p~~~~  245 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA-----AGVQPHSLDLSHNSLRATVNPSAP  245 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH-----HTCCCSSEECTTSCCCCCCCSCCS
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh-----cCCCCCEEECCCCCCCccchhhHH
Confidence            7777777776543   21 12234566666666666666543321   111     135566666666666555444444


Q ss_pred             CC---CCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcC
Q psy16110        595 IH---SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNI  657 (719)
Q Consensus       595 ~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  657 (719)
                      .+   ++|++|++++|+++.+|...   .++|++|++++|++++++.  +..+++|+.|++++|++
T Consensus       246 ~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          246 RCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             SCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTT
T ss_pred             hccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCC
Confidence            33   34555555555554444321   1344444444444444322  33344444444444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=1.1e-20  Score=200.03  Aligned_cols=161  Identities=25%  Similarity=0.403  Sum_probs=131.0

Q ss_pred             CCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCC
Q psy16110        545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ  624 (719)
Q Consensus       545 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  624 (719)
                      .++.|+|++|+++.++...+..    .+++|++|+|++|+++++.+..|..+++|++|+|++|+++.+++..|.++++|+
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~----~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPT----RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE  115 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSS----CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCEEECCCCCCCccChhhhhh----cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence            3555666666655555444430    246777777777777777777788888888888888888888888888899999


Q ss_pred             EEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccC---CCCCCCcEEECCCCcCCCcChHhhcCccc--c-EEe
Q psy16110        625 EIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCF---FNSSQLQIINLSFNRLEKLPERLFNTFLY--T-NYD  698 (719)
Q Consensus       625 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~--L-~L~  698 (719)
                      +|+|++|+++++.+..|.++++|+.|+|++|+++.+++..|   ..+++|+.|||++|+|+.+|...|..++.  + .|+
T Consensus       116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~  195 (361)
T 2xot_A          116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY  195 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEE
T ss_pred             EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEE
Confidence            99999999999888889999999999999999999888777   56899999999999999999988988887  5 899


Q ss_pred             cCCCceeeeccCCCccccC
Q psy16110        699 MAPNLVFQSHLSGHRCECA  717 (719)
Q Consensus       699 l~~N~l~~~~~~~~~C~c~  717 (719)
                      |++||+        .|+|+
T Consensus       196 l~~N~~--------~C~C~  206 (361)
T 2xot_A          196 LHNNPL--------ECDCK  206 (361)
T ss_dssp             CCSSCE--------ECCHH
T ss_pred             ecCCCc--------cCCcC
Confidence            999999        89985

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=1.8e-20  Score=183.58  Aligned_cols=150  Identities=25%  Similarity=0.331  Sum_probs=97.1

Q ss_pred             CEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCc-CcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110        547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFP-SSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE  625 (719)
Q Consensus       547 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  625 (719)
                      +.+++++|.++.++....        ..+++|++++|.+++..+ ..|..+++|++|++++|+++.+++..|.++++|++
T Consensus        14 ~~l~~s~n~l~~iP~~~~--------~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~   85 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--------QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE   85 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--------TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CEeEeCCCCcccCccCCC--------CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence            356666666665554332        345666666666666633 34566666666666666666666666666666666


Q ss_pred             EECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCce
Q psy16110        626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLV  704 (719)
Q Consensus       626 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l  704 (719)
                      |+|++|.++++++..|.++++|++|+|++|+++++++..|..+++|++|+|++|+++.+++..|..+++| .|++++|++
T Consensus        86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            6666666666666666666666666666666666666666666666777776666666666666666666 667777766

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=1e-20  Score=200.36  Aligned_cols=187  Identities=24%  Similarity=0.320  Sum_probs=126.0

Q ss_pred             CCCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcc
Q psy16110        103 DFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDK  182 (719)
Q Consensus       103 ~~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~  182 (719)
                      .||..|.|..     ..++|.+..++     .+|.                   .++.    .++.|+|++|+|+.++..
T Consensus        11 ~Cp~~C~C~~-----~~l~c~~~~l~-----~iP~-------------------~~~~----~l~~L~Ls~N~l~~l~~~   57 (361)
T 2xot_A           11 SCPANCLCAS-----NILSCSKQQLP-----NVPQ-------------------SLPS----YTALLDLSHNNLSRLRAE   57 (361)
T ss_dssp             TCCTTCEEET-----TEEECCSSCCS-----SCCS-------------------SCCT----TCSEEECCSSCCCEECTT
T ss_pred             CCCCCCEECC-----CEEEeCCCCcC-----ccCc-------------------cCCC----CCCEEECCCCCCCccChh
Confidence            4566899973     46888776554     3332                   2222    488999999999988887


Q ss_pred             cccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCC
Q psy16110        183 LFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL  262 (719)
Q Consensus       183 ~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l  262 (719)
                      .|...+++|++|+|++|.+++     +.+.+|.++++|++|+|++|+++.+++..|.++++|++|+|++|.++.+++..|
T Consensus        58 ~~~~~l~~L~~L~L~~N~i~~-----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~  132 (361)
T 2xot_A           58 WTPTRLTNLHSLLLSHNHLNF-----ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF  132 (361)
T ss_dssp             SSSSCCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             hhhhcccccCEEECCCCcCCc-----cChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh
Confidence            774345777777777777765     333467777777777777777777777667777777777777777777666667


Q ss_pred             CCCCCCcEEEcCCCcCcccCCCcc---cCCCccCEEEccCCCCcccCcccccCccc--CcEEEcCCCCCC
Q psy16110        263 NGPRALRILSMAYNRIGTLKADSF---LSQRWLERIILRGNRLTTIEGGAFNGLAK--IHILNLGYNRLN  327 (719)
Q Consensus       263 ~~l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~--L~~L~L~~n~l~  327 (719)
                      .++++|++|+|++|.++.++...|   ..+++|++|++++|.++.+++..|..++.  ++.|++++|++.
T Consensus       133 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            777777777777777777665555   45666666666666666666555555554  355666666553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=3.2e-20  Score=180.45  Aligned_cols=182  Identities=23%  Similarity=0.370  Sum_probs=133.4

Q ss_pred             CCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCccc
Q psy16110        104 FPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKL  183 (719)
Q Consensus       104 ~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~  183 (719)
                      ||..|+|.     ...++|.+..+.     .                   +|..++    .++++|++++|.++.++...
T Consensus         1 Cp~~C~C~-----~~~v~c~~~~l~-----~-------------------~p~~~~----~~l~~L~l~~n~l~~~~~~~   47 (208)
T 2o6s_A            1 CPSRCSCS-----GTTVECYSQGRT-----S-------------------VPTGIP----AQTTYLDLETNSLKSLPNGV   47 (208)
T ss_dssp             CCTTCEEE-----TTEEECCSSCCS-----S-------------------CCSCCC----TTCSEEECCSSCCCCCCTTT
T ss_pred             CcCCCEEC-----CCEEEecCCCcc-----C-------------------CCCCCC----CCCcEEEcCCCccCcCChhh
Confidence            45688996     357888765544     2                   332222    25899999999999888877


Q ss_pred             ccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCC
Q psy16110        184 FSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLN  263 (719)
Q Consensus       184 f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~  263 (719)
                      |. .+++|++|++++|.+++     +.+..|.++++|++|+|++|+++.+++..|.++++|++|++++|.++.+++..+.
T Consensus        48 ~~-~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  121 (208)
T 2o6s_A           48 FD-ELTSLTQLYLGGNKLQS-----LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD  121 (208)
T ss_dssp             TT-TCTTCSEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             hc-ccccCcEEECCCCccCc-----cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhc
Confidence            74 56788888888888775     3334577788888888888888887777777888888888888888887776677


Q ss_pred             CCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCC
Q psy16110        264 GPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNS  331 (719)
Q Consensus       264 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  331 (719)
                      .+++|++|++++|.++.+++..|..+++|++|++++|.+.       ..+++|++|+++.|++++.-+
T Consensus       122 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          122 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBB
T ss_pred             cCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceee
Confidence            7888888888888887777767777788888888877654       345567777777777765433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=7.6e-20  Score=179.14  Aligned_cols=162  Identities=21%  Similarity=0.410  Sum_probs=97.9

Q ss_pred             CCCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcc
Q psy16110        103 DFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDK  182 (719)
Q Consensus       103 ~~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~  182 (719)
                      .||..|+|..     ..++|.+..++     .+                   |..++    .+++.|++++|.|+.++..
T Consensus         4 ~CP~~C~C~~-----~~v~c~~~~l~-----~i-------------------P~~l~----~~l~~L~l~~n~i~~i~~~   50 (220)
T 2v9t_B            4 HCPAACTCSN-----NIVDCRGKGLT-----EI-------------------PTNLP----ETITEIRLEQNTIKVIPPG   50 (220)
T ss_dssp             CSCTTSEEET-----TEEECTTSCCS-----SC-------------------CSSCC----TTCCEEECCSSCCCEECTT
T ss_pred             CCCCCCEECC-----CEEEcCCCCcC-----cC-------------------CCccC----cCCCEEECCCCcCCCcCHh
Confidence            4667899973     46788765554     33                   32222    2488888888888888876


Q ss_pred             cccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCC
Q psy16110        183 LFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL  262 (719)
Q Consensus       183 ~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l  262 (719)
                      .|. .+++|++|+|++|.+++     +.+.+|.++++|++|+|++|+++.+++..|.++++|++|+|++|.++.+++..|
T Consensus        51 ~~~-~l~~L~~L~Ls~N~i~~-----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~  124 (220)
T 2v9t_B           51 AFS-PYKKLRRIDLSNNQISE-----LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF  124 (220)
T ss_dssp             SST-TCTTCCEEECCSSCCCE-----ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             Hhh-CCCCCCEEECCCCcCCC-----cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc
Confidence            664 44566666666666654     223455566666666666666666655555556666666666666665555555


Q ss_pred             CCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCc
Q psy16110        263 NGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT  303 (719)
Q Consensus       263 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~  303 (719)
                      ..+++|++|++++|.++.+.+..|..+++|++|++++|.+.
T Consensus       125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            55555555555555555555555555555555555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=8.2e-20  Score=202.69  Aligned_cols=210  Identities=25%  Similarity=0.334  Sum_probs=126.2

Q ss_pred             CccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEcc
Q psy16110        473 KLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS  552 (719)
Q Consensus       473 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  552 (719)
                      +++.|++++|++++++...   .++|++|++++|.++.++    ..+++|++|++++|+++++ |. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECC
Confidence            4555555555555544322   245666666666666555    2346666666666666663 33 333  67777777


Q ss_pred             CCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCC
Q psy16110        553 FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ  632 (719)
Q Consensus       553 ~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  632 (719)
                      +|+++.++.         .+++|+.|++++|.++++ |.   .+++|++|++++|+++.+|.  +.  ++|+.|+|++|+
T Consensus       129 ~N~l~~lp~---------~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          129 NNQLTMLPE---------LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNL  191 (571)
T ss_dssp             SSCCSCCCC---------CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSC
T ss_pred             CCcCCCCCC---------cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCC
Confidence            776666544         136677777777777764 33   45677777777777777665  44  777888888887


Q ss_pred             CcccCcccCCCCCCC-------CEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCccc-------c-EE
Q psy16110        633 LKTIDDYDYGYLPRL-------RKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLY-------T-NY  697 (719)
Q Consensus       633 l~~~~~~~l~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~-------L-~L  697 (719)
                      |+.++.  +..  +|       +.|+|++|+|+.+++. +..+++|+.|+|++|+++...+..|..++.       - ++
T Consensus       192 L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~  266 (571)
T 3cvr_A          192 LESLPA--VPV--RNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF  266 (571)
T ss_dssp             CSSCCC--CC----------CCEEEECCSSCCCCCCGG-GGGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEEC
T ss_pred             CCchhh--HHH--hhhcccccceEEecCCCcceecCHH-HhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEE
Confidence            776665  433  56       8899999999887765 445889999999999988665555555432       1 45


Q ss_pred             ecCCCceeeeccCCCccccC
Q psy16110        698 DMAPNLVFQSHLSGHRCECA  717 (719)
Q Consensus       698 ~l~~N~l~~~~~~~~~C~c~  717 (719)
                      ++++|.+...+-+  .|+|.
T Consensus       267 ~l~~~~~~~~~~p--~~~~~  284 (571)
T 3cvr_A          267 SMSDGQQNTLHRP--LADAV  284 (571)
T ss_dssp             CC----------C--CSHHH
T ss_pred             eeccccccccccc--chhhH
Confidence            6666555433333  56663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=9.7e-20  Score=179.63  Aligned_cols=150  Identities=21%  Similarity=0.271  Sum_probs=104.0

Q ss_pred             CCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110        546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE  625 (719)
Q Consensus       546 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  625 (719)
                      .+.++++++.++.++....        ++|++|++++|.++++.+..|..+++|++|+|++|+++.+++..|..+++|++
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~   92 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV   92 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEeEccCCCcCccCCCCC--------CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCE
Confidence            4556666666666654332        56777777777777776666777777777777777777777666677777777


Q ss_pred             EECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCce
Q psy16110        626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLV  704 (719)
Q Consensus       626 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l  704 (719)
                      |+|++|+++++++..|..+++|++|++++|+++.++. .+..+++|++|+|++|+++.+++..|..+++| .|++++||+
T Consensus        93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             EECCCCcCCccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            7777777777766666777777777777777775543 35666777777777777777776667777777 777777777

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=8.1e-20  Score=178.94  Aligned_cols=132  Identities=23%  Similarity=0.387  Sum_probs=71.3

Q ss_pred             ccEEEcCCCCccccC-cccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110        166 IRRLDFSGNALRRLS-DKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL  244 (719)
Q Consensus       166 L~~L~Ls~n~i~~l~-~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  244 (719)
                      +++|+|++|.|+.++ ..+|. .+++|++|+|++|.+++     +.+.+|.++++|++|+|++|+++.+++..|.++++|
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~-~l~~L~~L~L~~N~i~~-----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  107 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFK-KLPQLRKINFSNNKITD-----IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL  107 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGG-GCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred             CCEEEcCCCcCCccCchhhhc-cCCCCCEEECCCCcCCE-----ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence            677777777777663 33442 44555555555555554     222345555555555555555555555555555555


Q ss_pred             cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCc
Q psy16110        245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT  303 (719)
Q Consensus       245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~  303 (719)
                      ++|+|++|+++.+++..+..+++|++|++++|.++.+.+..|..+++|++|++++|.+.
T Consensus       108 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            55555555555554444555555555555555555554444555555555555555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=5.7e-22  Score=212.41  Aligned_cols=260  Identities=16%  Similarity=0.139  Sum_probs=178.6

Q ss_pred             cccccCCCcCcEEeCcCCCCCCCCCC----CCCCCCCCccEEEcCCCCCCCCC---chh-------hcCCCCccEEEccC
Q psy16110        440 PTAFTNVPTLLHLNLSRNAHLSSLPV----GGFDPLKKLEVLDLAATGLKSIP---QYQ-------FDELLNLKYLCLAH  505 (719)
Q Consensus       440 ~~~~~~l~~L~~L~L~~n~~l~~l~~----~~~~~l~~L~~L~ls~n~l~~~~---~~~-------~~~~~~L~~L~L~~  505 (719)
                      ...+..+++|++|++++| .++....    ..+..+++|++|++++|.+..+.   +..       +..+++|++|++++
T Consensus        25 ~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             SHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            345677889999999999 5554322    22567889999999997665432   212       36788999999999


Q ss_pred             CcCCCC----ChhhhcCCCCCCEEeCCCCccccccCCccC----CC---------CCCCEEEccCCcCCcccCCcCCCCC
Q psy16110        506 NHLTEI----PEMMFKNLLNLTYLDLSNNNIVNLRVGSLY----GL---------PSMKRLDLSFNKLTTFKGDYFNTKS  568 (719)
Q Consensus       506 n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~----~l---------~~L~~L~L~~n~l~~~~~~~~~~~~  568 (719)
                      |.++..    .+..+..+++|++|++++|.++...+..+.    .+         ++|++|++++|+++......+. ..
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~  182 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA-KT  182 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH-HH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH-HH
Confidence            998873    233567889999999999998754433333    33         8899999999988632211100 00


Q ss_pred             CCCCCCCcEEECcCCCCCC-----cCcCcccCCCCccEEEcCCCCCC----CcChhhhcCCCCCCEEECCCCCCccc---
Q psy16110        569 KPNTSSLEELNLNNNELTY-----LFPSSFTIHSKLKTLKLAFNKFN----YFPKELILGLSYLQEIDLSNNQLKTI---  636 (719)
Q Consensus       569 ~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~---  636 (719)
                      +..+++|++|++++|.++.     ..+..+..+++|++|+|++|.++    ...+..+..+++|++|+|++|.+++.   
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            1234789999999998873     34447788889999999998885    22234577888899999999988765   


Q ss_pred             -CcccC--CCCCCCCEEeCCCCcCCC-----CCcccCCCCCCCcEEECCCCcCCCcC---hHhhcCcccc-EEecCC
Q psy16110        637 -DDYDY--GYLPRLRKLNLNNNNIDA-----ISETCFFNSSQLQIINLSFNRLEKLP---ERLFNTFLYT-NYDMAP  701 (719)
Q Consensus       637 -~~~~l--~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~i~---~~~~~~l~~L-~L~l~~  701 (719)
                       .+..+  ..+++|+.|+|++|++++     ++...+.++++|++|++++|+++...   ..+...++.+ .+.+..
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence             22234  347889999999998887     33332256788999999999888666   3333344554 444433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=4e-22  Score=213.58  Aligned_cols=240  Identities=16%  Similarity=0.120  Sum_probs=149.5

Q ss_pred             CCCccEEEccCCCCCCcCc----ccccCCCcCcEEeCcCCCCCCCC----CCC------CCCCCCCccEEEcCCCCCCCC
Q psy16110        422 YKLLTKLDLSHNNLKELEP----TAFTNVPTLLHLNLSRNAHLSSL----PVG------GFDPLKKLEVLDLAATGLKSI  487 (719)
Q Consensus       422 ~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~~l~~l----~~~------~~~~l~~L~~L~ls~n~l~~~  487 (719)
                      +++|+.|++++|.+....+    ..+..+++|++|++++| .+..+    |..      .+..+++|++|++++|.+...
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            4555666666665554322    22445566666666665 33322    211      124567777777777777662


Q ss_pred             ----CchhhcCCCCccEEEccCCcCCCCChhhh----cCC---------CCCCEEeCCCCccccc-cC---CccCCCCCC
Q psy16110        488 ----PQYQFDELLNLKYLCLAHNHLTEIPEMMF----KNL---------LNLTYLDLSNNNIVNL-RV---GSLYGLPSM  546 (719)
Q Consensus       488 ----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----~~l---------~~L~~L~Ls~n~i~~~-~~---~~l~~l~~L  546 (719)
                          .+..+..+++|++|++++|.++......+    ..+         ++|++|++++|+++.. .+   ..+..+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence                23356667778888888877754333222    223         7888888888887632 22   345567788


Q ss_pred             CEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCC----CcCcCcccCCCCccEEEcCCCCCCCcC----hhhh-
Q psy16110        547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT----YLFPSSFTIHSKLKTLKLAFNKFNYFP----KELI-  617 (719)
Q Consensus       547 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l-  617 (719)
                      ++|++++|+++......+....+..+++|++|+|++|.++    ..+|..+..+++|++|+|++|+++...    +..+ 
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  269 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  269 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence            8888888877632100000001123578888888888885    445667788888888888888887642    2334 


Q ss_pred             -cCCCCCCEEECCCCCCcc-----cCcccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110        618 -LGLSYLQEIDLSNNQLKT-----IDDYDYGYLPRLRKLNLNNNNIDAISE  662 (719)
Q Consensus       618 -~~l~~L~~L~Ls~n~l~~-----~~~~~l~~l~~L~~L~Ls~N~l~~~~~  662 (719)
                       ..+++|++|+|++|.+++     ++...+.++++|++|++++|++++..+
T Consensus       270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence             337888888888888887     444222567888888888888887663

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.81  E-value=2.6e-21  Score=203.13  Aligned_cols=106  Identities=15%  Similarity=0.142  Sum_probs=44.7

Q ss_pred             CcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCC-CchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEE
Q psy16110        447 PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI-PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYL  525 (719)
Q Consensus       447 ~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  525 (719)
                      ++++.|++++| .++..+.. +..+++|++|++++|.+... .+..+..+++|++|++++|.++......+..+++|++|
T Consensus        70 ~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred             ccceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence            44555555544 33332222 12344455555554444322 22234444455555555544443333334444445555


Q ss_pred             eCCCC-ccccc-cCCccCCCCCCCEEEccCC
Q psy16110        526 DLSNN-NIVNL-RVGSLYGLPSMKRLDLSFN  554 (719)
Q Consensus       526 ~Ls~n-~i~~~-~~~~l~~l~~L~~L~L~~n  554 (719)
                      ++++| .+++. .+..+..+++|++|++++|
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            55444 33331 2222334444444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=5.5e-19  Score=171.64  Aligned_cols=168  Identities=25%  Similarity=0.292  Sum_probs=118.5

Q ss_pred             CEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEE
Q psy16110        523 TYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL  602 (719)
Q Consensus       523 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  602 (719)
                      +.++.+++.++.+...   ..++|++|++++|+++.++...+.     .+++|++|++++|+++++.+..|..+++|++|
T Consensus        10 ~~v~c~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTG---IPAQTTYLDLETNSLKSLPNGVFD-----ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYL   81 (208)
T ss_dssp             TEEECCSSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTT-----TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CEEEecCCCccCCCCC---CCCCCcEEEcCCCccCcCChhhhc-----ccccCcEEECCCCccCccChhhcCCCCCcCEE
Confidence            4666777766665322   235777888888777766655543     34777788888777777766667777778888


Q ss_pred             EcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCC
Q psy16110        603 KLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE  682 (719)
Q Consensus       603 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  682 (719)
                      ++++|+++.+++..+..+++|++|++++|+++++++..|.++++|++|++++|+++++++..|..+++|++|++++|++.
T Consensus        82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            88777777777776777777888888777777777766777777778888777777777766777777778888777664


Q ss_pred             CcChHhhcCcccc-EEecCCCcee
Q psy16110        683 KLPERLFNTFLYT-NYDMAPNLVF  705 (719)
Q Consensus       683 ~i~~~~~~~l~~L-~L~l~~N~l~  705 (719)
                      .       .++.| ++++++|.+.
T Consensus       162 ~-------~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          162 C-------TCPGIRYLSEWINKHS  178 (208)
T ss_dssp             C-------CTTTTHHHHHHHHHCT
T ss_pred             c-------CCCCHHHHHHHHHhCC
Confidence            3       23455 5566666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.81  E-value=1.1e-18  Score=186.32  Aligned_cols=263  Identities=16%  Similarity=0.237  Sum_probs=179.6

Q ss_pred             CCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEE
Q psy16110        423 KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLC  502 (719)
Q Consensus       423 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~  502 (719)
                      ..++.+.+.+ .++.+...+|.++ +|+.+.+..+  +..++..+|.++ +|+.+.+.. .++.+...+|.++.+|+.++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            4455555543 4556666666664 5677766654  666666666664 577777764 56666666777777777777


Q ss_pred             ccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcC
Q psy16110        503 LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN  582 (719)
Q Consensus       503 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~  582 (719)
                      +.+|.++.++..+|. +.+|+.+.+.. .+..+...+|.++++|+.+.+..+ ++.++...|..      .+|+.+++ .
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~------~~L~~i~l-p  256 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE------SGITTVKL-P  256 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT------CCCSEEEE-E
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc------CCccEEEe-C
Confidence            777777777776666 46777777763 366666677777777777777653 55555555542      46777777 3


Q ss_pred             CCCCCcCcCcccCCCCccEEEcCCCCCC-----CcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcC
Q psy16110        583 NELTYLFPSSFTIHSKLKTLKLAFNKFN-----YFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNI  657 (719)
Q Consensus       583 n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  657 (719)
                      +.++.+...+|..+++|+++.+.+|.+.     .++..+|.+|++|+.+++. +.+..+...+|.++++|+.++|..+ +
T Consensus       257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l  334 (401)
T 4fdw_A          257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V  334 (401)
T ss_dssp             TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred             CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c
Confidence            4566666677777777777777776554     5777777788888888887 4477777777888888888888544 7


Q ss_pred             CCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcc-cc-EEecCCCce
Q psy16110        658 DAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFL-YT-NYDMAPNLV  704 (719)
Q Consensus       658 ~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L-~L~l~~N~l  704 (719)
                      +.+...+|.++ +|+.|++++|.+..++...|.+++ .+ .|.+..+.+
T Consensus       335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            77777777777 788888888877777777777774 56 777766654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=9.5e-21  Score=198.06  Aligned_cols=264  Identities=17%  Similarity=0.195  Sum_probs=169.7

Q ss_pred             CCCccEEEccCCCCC--CcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCC--------CCCccEEEcCCCCCCCCCchh
Q psy16110        422 YKLLTKLDLSHNNLK--ELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDP--------LKKLEVLDLAATGLKSIPQYQ  491 (719)
Q Consensus       422 ~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~--------l~~L~~L~ls~n~l~~~~~~~  491 (719)
                      +++|+.|||++|++.  ......   ++.+..+.+..+    .+|..+|.+        +++|+.+++.+ .++.++..+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a  119 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA  119 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred             hccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence            455666666666665  222111   122333333333    456666666        77777777777 677777777


Q ss_pred             hcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCc----cccccCCccCCCCCCC-EEEccCCcCCcccCCcCCC
Q psy16110        492 FDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNN----IVNLRVGSLYGLPSMK-RLDLSFNKLTTFKGDYFNT  566 (719)
Q Consensus       492 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~  566 (719)
                      |.++++|+.+++.+|.+..++..+|..+.++.++....+.    ...+...+|.++..|+ .+.+....  .++...+..
T Consensus       120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~--~l~~~~~~~  197 (329)
T 3sb4_A          120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG--KLEDEIMKA  197 (329)
T ss_dssp             TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC--CHHHHHHHT
T ss_pred             hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC--cHHHHHhhc
Confidence            7777777777777777777777777776666666655432    2223344555566665 44443221  111111110


Q ss_pred             CCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCC
Q psy16110        567 KSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPR  646 (719)
Q Consensus       567 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  646 (719)
                      .  ....++..+.+.++-...........+++|+++++++|+++.++..+|.++++|+.|++.+| +..+++.+|.++++
T Consensus       198 ~--~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~  274 (329)
T 3sb4_A          198 G--LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGR  274 (329)
T ss_dssp             T--CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             c--cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChh
Confidence            0  11245566666554221111111123788888888888888888888888888888888887 88888888888888


Q ss_pred             CC-EEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEec
Q psy16110        647 LR-KLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDM  699 (719)
Q Consensus       647 L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l  699 (719)
                      |+ .+++.+ +++.+.+.+|.+|++|+.|++++|.++.|++.+|.++++| .+..
T Consensus       275 L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          275 LAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            88 888887 7888888888888888888888888888888888888888 7653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=1.6e-19  Score=184.95  Aligned_cols=174  Identities=29%  Similarity=0.375  Sum_probs=97.3

Q ss_pred             CCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCE
Q psy16110        469 DPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR  548 (719)
Q Consensus       469 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~  548 (719)
                      ..+++|+.|++++|.+..++  .+..+++|++|++++|++++++.  +..+++|++|++++|++++..  .+..+++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCE
Confidence            34556666666666666554  24556666666666666665554  555666666666666665532  2555566666


Q ss_pred             EEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEEC
Q psy16110        549 LDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDL  628 (719)
Q Consensus       549 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  628 (719)
                      |++++|++++++  .+     ..+++|++|++++|++++.  ..+..+++|++|++++|+++++++  +..+++|+.|++
T Consensus       117 L~L~~n~i~~~~--~l-----~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L  185 (291)
T 1h6t_A          117 LSLEHNGISDIN--GL-----VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL  185 (291)
T ss_dssp             EECTTSCCCCCG--GG-----GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             EECCCCcCCCCh--hh-----cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence            666666655442  11     1235566666666655554  345555555555555555555544  455555555555


Q ss_pred             CCCCCcccCcccCCCCCCCCEEeCCCCcCCCCC
Q psy16110        629 SNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS  661 (719)
Q Consensus       629 s~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  661 (719)
                      ++|.+++++.  +..+++|+.|++++|+++..+
T Consensus       186 ~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          186 SKNHISDLRA--LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CSSCCCBCGG--GTTCTTCSEEEEEEEEEECCC
T ss_pred             CCCcCCCChh--hccCCCCCEEECcCCcccCCc
Confidence            5555555432  455555555555555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=1.1e-18  Score=193.75  Aligned_cols=177  Identities=23%  Similarity=0.352  Sum_probs=154.2

Q ss_pred             CccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCc
Q psy16110        497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLE  576 (719)
Q Consensus       497 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~  576 (719)
                      +++.|++++|.++++|...   .++|++|++++|+++.+ |   ..+++|++|++++|+++.++.  +.       .+|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~ip~--l~-------~~L~  123 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTLPE--LP-------ASLK  123 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC--CC-------TTCC
T ss_pred             CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCcch--hh-------cCCC
Confidence            8999999999999988754   37899999999999976 4   457999999999999998765  32       3899


Q ss_pred             EEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCc
Q psy16110        577 ELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNN  656 (719)
Q Consensus       577 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~  656 (719)
                      +|++++|.++++ |.   .+++|++|++++|+++++|.    .+++|++|++++|++++++.  +.  ++|+.|+|++|+
T Consensus       124 ~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          124 HLDVDNNQLTML-PE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNL  191 (571)
T ss_dssp             EEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSC
T ss_pred             EEECCCCcCCCC-CC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCC
Confidence            999999999996 44   68999999999999999886    57899999999999999776  55  899999999999


Q ss_pred             CCCCCcccCCCCCCC-------cEEECCCCcCCCcChHhhcCcccc-EEecCCCceee
Q psy16110        657 IDAISETCFFNSSQL-------QIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQ  706 (719)
Q Consensus       657 l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~  706 (719)
                      |+.++.  |..  +|       +.|+|++|+|+.+|..++. +++| .|+|++|++..
T Consensus       192 L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          192 LESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNPLSS  244 (571)
T ss_dssp             CSSCCC--CC----------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSCCH
T ss_pred             CCchhh--HHH--hhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCcCCC
Confidence            998776  543  77       9999999999999998765 9999 99999999965

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=1.6e-20  Score=197.13  Aligned_cols=232  Identities=15%  Similarity=0.110  Sum_probs=118.5

Q ss_pred             ccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCc-CcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEE
Q psy16110        400 DTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKEL-EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLD  478 (719)
Q Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~  478 (719)
                      +.++.|++++|.+.+..+..+.+++|++|++++|.+.+. .+..+..+++|++|++++|                     
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~---------------------  128 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL---------------------  128 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC---------------------
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc---------------------
Confidence            344555555555444444444455555555555554432 2333444444444444444                     


Q ss_pred             cCCCCCCCCCchhhcCCCCccEEEccCC-cCCCC-ChhhhcCCCCCCEEeCCCC-ccccc-cCCccCCCC-CCCEEEccC
Q psy16110        479 LAATGLKSIPQYQFDELLNLKYLCLAHN-HLTEI-PEMMFKNLLNLTYLDLSNN-NIVNL-RVGSLYGLP-SMKRLDLSF  553 (719)
Q Consensus       479 ls~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n-~i~~~-~~~~l~~l~-~L~~L~L~~  553 (719)
                          .++......+..+++|++|++++| .++.. ....+..+++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus       129 ----~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          129 ----RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             ----BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             ----ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence                333333334444555555555555 34321 1222444555566666555 55542 233444555 666666666


Q ss_pred             Cc--CCc--ccCCcCCCCCCCCCCCCcEEECcCCC-CCCcCcCcccCCCCccEEEcCCCC-CCCcChhhhcCCCCCCEEE
Q psy16110        554 NK--LTT--FKGDYFNTKSKPNTSSLEELNLNNNE-LTYLFPSSFTIHSKLKTLKLAFNK-FNYFPKELILGLSYLQEID  627 (719)
Q Consensus       554 n~--l~~--~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~  627 (719)
                      |.  +++  ++ ..+     ..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|+
T Consensus       205 ~~~~~~~~~l~-~~~-----~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  278 (336)
T 2ast_B          205 YRKNLQKSDLS-TLV-----RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ  278 (336)
T ss_dssp             CGGGSCHHHHH-HHH-----HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             CcccCCHHHHH-HHH-----hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence            52  221  11 111     123666677776666 555555566677777777777774 2222222456677777777


Q ss_pred             CCCCCCcccCcccCCCC-CCCCEEeCCCCcCCCCCcccCC
Q psy16110        628 LSNNQLKTIDDYDYGYL-PRLRKLNLNNNNIDAISETCFF  666 (719)
Q Consensus       628 Ls~n~l~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~  666 (719)
                      +++| +   +...+..+ ..++.|++++|+++++.+..+.
T Consensus       279 l~~~-i---~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          279 VFGI-V---PDGTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             CTTS-S---CTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             ccCc-c---CHHHHHHHHhhCcceEEecccCccccCCccc
Confidence            7777 3   22223333 2366666777777777665544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.79  E-value=6.2e-18  Score=181.29  Aligned_cols=136  Identities=18%  Similarity=0.329  Sum_probs=69.3

Q ss_pred             CccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcC
Q psy16110        175 ALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRF  254 (719)
Q Consensus       175 ~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  254 (719)
                      .++.|+..+|. .+.+|+.+.+..+ +..     |+..+|.+|++|+.+++..+ ++.+...+|.++.+|+.+.+..+ +
T Consensus        58 ~VtsIg~~AF~-~c~~L~~i~lp~~-i~~-----I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l  128 (394)
T 4fs7_A           58 DVVSIGYAAFQ-GCRKVTEIKIPST-VRE-----IGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-L  128 (394)
T ss_dssp             EEEEECTTTTT-TCTTEEEEECCTT-CCE-----ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-C
T ss_pred             eEeEhHHHHhh-CCCCceEEEeCCC-ccC-----cchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-e
Confidence            45677777775 4466666666543 222     33456666666666666543 55666666666666666555432 4


Q ss_pred             CcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcC
Q psy16110        255 TSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLG  322 (719)
Q Consensus       255 ~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  322 (719)
                      +.+...+|.++..++....  ..+..+...+|.++.+|+.+.+.++ +..+...+|.++.+|+.+++.
T Consensus       129 ~~i~~~aF~~~~~~~~~~~--~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~  193 (394)
T 4fs7_A          129 KSIGVEAFKGCDFKEITIP--EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLP  193 (394)
T ss_dssp             CEECTTTTTTCCCSEEECC--TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred             eeecceeeecccccccccC--ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcC
Confidence            4555545555443322221  1223333444555555555555432 233444444444444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=5.5e-20  Score=192.22  Aligned_cols=266  Identities=14%  Similarity=0.132  Sum_probs=194.1

Q ss_pred             hccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccC--------CCcCcEEeCcCCCCCCCCCCCCCCC
Q psy16110        399 EDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTN--------VPTLLHLNLSRNAHLSSLPVGGFDP  470 (719)
Q Consensus       399 ~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~L~~n~~l~~l~~~~~~~  470 (719)
                      +++|+.|+|++|++.........++.++.+.+..+   .++..+|.+        +++|+.|++.+  .++.++..+|.+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~  122 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG  122 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTT
T ss_pred             hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhc
Confidence            45677777777777632222222333444555544   455667777        89999999987  578888888999


Q ss_pred             CCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCC----cCCCCChhhhcCCCCCC-EEeCCCCcc-ccccCCccCCCC
Q psy16110        471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHN----HLTEIPEMMFKNLLNLT-YLDLSNNNI-VNLRVGSLYGLP  544 (719)
Q Consensus       471 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n----~l~~~~~~~~~~l~~L~-~L~Ls~n~i-~~~~~~~l~~l~  544 (719)
                      +++|+.+++++|.+..++..+|.++.++..+....+    ....+...+|..+..|+ .+.+..... .......-....
T Consensus       123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~  202 (329)
T 3sb4_A          123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR  202 (329)
T ss_dssp             CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred             CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence            999999999999888888888888887877776653    23455556677777777 555544321 111111112345


Q ss_pred             CCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCC
Q psy16110        545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ  624 (719)
Q Consensus       545 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  624 (719)
                      +++.+.+.++- .......+.    ..+++|+.++|++|+++.+.+.+|..+++|++|++.+| ++.++..+|.++++|+
T Consensus       203 ~~~~l~~~~~l-~~~~~~~l~----~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~  276 (329)
T 3sb4_A          203 DINFLTIEGKL-DNADFKLIR----DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA  276 (329)
T ss_dssp             GCSEEEEEECC-CHHHHHHHH----HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             ccceEEEeeee-cHHHHHHHH----HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence            66777776542 111111111    12588999999999999998899999999999999998 8899999999999999


Q ss_pred             -EEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEEC
Q psy16110        625 -EIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINL  676 (719)
Q Consensus       625 -~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  676 (719)
                       .+++.+ .++.+.+.+|.+|++|+.+++++|+++.+.+.+|.++++|+.|..
T Consensus       277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence             999988 889999999999999999999999999999999999999998864

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=7.8e-19  Score=179.85  Aligned_cols=201  Identities=19%  Similarity=0.282  Sum_probs=166.8

Q ss_pred             CccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEcc
Q psy16110        473 KLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS  552 (719)
Q Consensus       473 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  552 (719)
                      ++..+.+..+.+..+..  +..+++|++|++++|.+..++.  +..+++|++|++++|+++++.+  +..+++|++|+++
T Consensus        25 ~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~   98 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD   98 (291)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence            34455666666666543  4567889999999999998864  7889999999999999998765  8899999999999


Q ss_pred             CCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCC
Q psy16110        553 FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ  632 (719)
Q Consensus       553 ~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  632 (719)
                      +|++++++.  +     ..+++|++|++++|++++.  ..+..+++|++|++++|+++.+  ..+..+++|++|++++|.
T Consensus        99 ~n~l~~~~~--l-----~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~  167 (291)
T 1h6t_A           99 ENKVKDLSS--L-----KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ  167 (291)
T ss_dssp             SSCCCCGGG--G-----TTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred             CCcCCCChh--h-----ccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCc
Confidence            999987653  2     3468999999999999986  4688899999999999999988  357889999999999999


Q ss_pred             CcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCccc
Q psy16110        633 LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLY  694 (719)
Q Consensus       633 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~  694 (719)
                      ++++++  +..+++|+.|++++|++++++.  +..+++|+.|++++|+++..|...+..+..
T Consensus       168 l~~~~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~  225 (291)
T 1h6t_A          168 ISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVV  225 (291)
T ss_dssp             CCCCGG--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCCEECCSEEEE
T ss_pred             cccchh--hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcccCCccccccccEE
Confidence            998876  8889999999999999998753  888999999999999998777654444333

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.78  E-value=1.1e-17  Score=178.47  Aligned_cols=254  Identities=16%  Similarity=0.285  Sum_probs=203.2

Q ss_pred             ccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchh
Q psy16110        412 ITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ  491 (719)
Q Consensus       412 l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~  491 (719)
                      ++.+....+.-.+|+.+.+..+ ++.+...+|.++ +|+.+.+..  .+..++..+|.++++|+.+++++|+++.++..+
T Consensus       124 i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a  199 (401)
T 4fdw_A          124 VKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST  199 (401)
T ss_dssp             CCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT
T ss_pred             cCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhh
Confidence            4555555555446778887665 777777778774 688888875  577788888888888888888888888888888


Q ss_pred             hcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCC
Q psy16110        492 FDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPN  571 (719)
Q Consensus       492 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  571 (719)
                      |. +.+|+.+.+..+ ++.++..+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++.++...|.     +
T Consensus       200 F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~-----~  269 (401)
T 4fdw_A          200 FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFY-----Y  269 (401)
T ss_dssp             TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTT-----T
T ss_pred             Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhh-----C
Confidence            87 578888888744 77888888888888888888764 67777778877 788888884 456666666664     4


Q ss_pred             CCCCcEEECcCCCCC-----CcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCC
Q psy16110        572 TSSLEELNLNNNELT-----YLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPR  646 (719)
Q Consensus       572 l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  646 (719)
                      |++|+.+++.+|.+.     .+.+.+|..|++|+.+.+. +.++.++..+|.+|++|+.++|..+ ++.+...+|.++ +
T Consensus       270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~  346 (401)
T 4fdw_A          270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-G  346 (401)
T ss_dssp             CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-C
T ss_pred             CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-C
Confidence            688888888887665     5677889999999999998 4588999999999999999999654 888988899999 9


Q ss_pred             CCEEeCCCCcCCCCCcccCCCCC-CCcEEECCCCcCC
Q psy16110        647 LRKLNLNNNNIDAISETCFFNSS-QLQIINLSFNRLE  682 (719)
Q Consensus       647 L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~  682 (719)
                      |+.+++++|.+..+.+..|..++ .++.|.+..+.+.
T Consensus       347 L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          347 IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             CCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            99999999999998888888885 7889999887655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.78  E-value=1e-17  Score=179.56  Aligned_cols=312  Identities=17%  Similarity=0.265  Sum_probs=178.8

Q ss_pred             cccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCC
Q psy16110        211 TSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQR  290 (719)
Q Consensus       211 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  290 (719)
                      ..+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+++.++ ++.++..+|.++.+|+.+.+..+ +..+...+|.++.
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~  140 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD  140 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred             HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence            345666666666666533 66666666666666666666543 56666666666666666555433 5555555565554


Q ss_pred             ccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCccccc
Q psy16110        291 WLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITI  370 (719)
Q Consensus       291 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~  370 (719)
                      .++.....  .+..+...+|.++++|+.+.+..+ +..++..     +|.++.+|+.+++..+ ++.++..+|.+     
T Consensus       141 ~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~-----~F~~c~~L~~i~l~~~-~~~I~~~~F~~-----  206 (394)
T 4fs7_A          141 FKEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNG-----LFSGCGKLKSIKLPRN-LKIIRDYCFAE-----  206 (394)
T ss_dssp             CSEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTT-----TTTTCTTCCBCCCCTT-CCEECTTTTTT-----
T ss_pred             ccccccCc--cccccchhhhcccCCCcEEecCCc-cceeccc-----cccCCCCceEEEcCCC-ceEeCchhhcc-----
Confidence            33332222  233444556666666666666543 3334433     3445566666666544 44444444332     


Q ss_pred             ccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccC-CCCccEEEccCCCCCCcCcccccCCCcC
Q psy16110        371 FSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTL  449 (719)
Q Consensus       371 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  449 (719)
                            +..|+.+.+..+...--........|+.+.+... ++.+....+. +..++.+.+..+ ...+....|..+..+
T Consensus       207 ------~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l  278 (394)
T 4fs7_A          207 ------CILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGL  278 (394)
T ss_dssp             ------CTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTC
T ss_pred             ------ccccceeecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC-cceeecccccccccc
Confidence                  4455555554432221111222345555555432 3333333332 566666666554 334555566677777


Q ss_pred             cEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCC
Q psy16110        450 LHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN  529 (719)
Q Consensus       450 ~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  529 (719)
                      +.+.....    .++...|..+.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.+|.+|+.+++..
T Consensus       279 ~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~  352 (394)
T 4fs7_A          279 KKVIYGSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPL  352 (394)
T ss_dssp             CEEEECSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred             ceeccCce----eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECc
Confidence            76666543    245555677777777777644 66677777777777777777643 6677777777777777777765


Q ss_pred             CccccccCCccCCCCCCCEEEccCC
Q psy16110        530 NNIVNLRVGSLYGLPSMKRLDLSFN  554 (719)
Q Consensus       530 n~i~~~~~~~l~~l~~L~~L~L~~n  554 (719)
                      + ++.+...+|.++++|+.+++..+
T Consensus       353 ~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          353 S-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             T-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             c-ccEehHHHhhCCCCCCEEEECCC
Confidence            5 66666777777777777777653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=4.3e-18  Score=167.79  Aligned_cols=153  Identities=25%  Similarity=0.314  Sum_probs=129.5

Q ss_pred             ccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCc
Q psy16110        166 IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLL  245 (719)
Q Consensus       166 L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  245 (719)
                      .+.++.+++.++.+|..+    .++|++|+|++|.+.+.     .+..|.++++|++|+|++|++..+++..|.++++|+
T Consensus        21 ~~~v~c~~~~l~~ip~~~----~~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~   91 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI----PTNAQILYLHDNQITKL-----EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT   91 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCEeEccCCCcCccCCCC----CCCCCEEEcCCCccCcc-----CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence            577999999999999855    37899999999998873     335788899999999999999888888888899999


Q ss_pred             EEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCC
Q psy16110        246 ELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNR  325 (719)
Q Consensus       246 ~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  325 (719)
                      +|+|++|+++.+++..+..+++|++|++++|.++.+ +..+..+++|++|++++|+++++++..|..+++|++|++++|+
T Consensus        92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A           92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            999999999988887788899999999999998877 4557888888888888888888887788888888888888887


Q ss_pred             CCC
Q psy16110        326 LNK  328 (719)
Q Consensus       326 l~~  328 (719)
                      +..
T Consensus       171 ~~c  173 (229)
T 3e6j_A          171 WDC  173 (229)
T ss_dssp             BCT
T ss_pred             ccC
Confidence            764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=1.5e-18  Score=194.85  Aligned_cols=174  Identities=30%  Similarity=0.399  Sum_probs=100.8

Q ss_pred             CCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCE
Q psy16110        469 DPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR  548 (719)
Q Consensus       469 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~  548 (719)
                      ..+++|+.|++++|.+..++  .+..+++|+.|+|++|.++.+++  +..+++|++|+|++|.+.++  ..+..+++|+.
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence            34566666666666666654  35556666666666666666554  55666666666666666553  24556666666


Q ss_pred             EEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEEC
Q psy16110        549 LDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDL  628 (719)
Q Consensus       549 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  628 (719)
                      |+|++|.+..++.  +     ..+++|+.|+|++|.++++  ..+..+++|+.|+|++|+++.+++  +..+++|+.|+|
T Consensus       114 L~Ls~N~l~~l~~--l-----~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L  182 (605)
T 1m9s_A          114 LSLEHNGISDING--L-----VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL  182 (605)
T ss_dssp             EECTTSCCCCCGG--G-----GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             EEecCCCCCCCcc--c-----cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence            6666666554321  1     2245566666666666554  345555666666666666655544  455566666666


Q ss_pred             CCCCCcccCcccCCCCCCCCEEeCCCCcCCCCC
Q psy16110        629 SNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS  661 (719)
Q Consensus       629 s~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  661 (719)
                      ++|.+++++  .+..+++|+.|+|++|++.+.+
T Consensus       183 s~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          183 SKNHISDLR--ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CSSCCCBCG--GGTTCTTCSEEECCSEEEECCC
T ss_pred             cCCCCCCCh--HHccCCCCCEEEccCCcCcCCc
Confidence            666655543  3555566666666666555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.74  E-value=2.1e-17  Score=157.97  Aligned_cols=130  Identities=25%  Similarity=0.423  Sum_probs=96.4

Q ss_pred             cEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCC
Q psy16110        576 EELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN  655 (719)
Q Consensus       576 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N  655 (719)
                      +.+++++|.++.+ |..+  .++|++|++++|+++.++ ..+.++++|++|++++|.++++++..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            4566666666655 3322  256777777777777776 45677777778888777777777777777788888888888


Q ss_pred             cCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCCccccC
Q psy16110        656 NIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHRCECA  717 (719)
Q Consensus       656 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~  717 (719)
                      +++++++..|..+++|++|+|++|+++.+++..|..+++| .|++++||+        .|+|+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~--------~C~c~  143 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL--------YCDCN  143 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE--------ECSGG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe--------ecCCc
Confidence            8887777777777888888888888888877777778888 888888887        67775

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=9.7e-18  Score=188.22  Aligned_cols=192  Identities=22%  Similarity=0.335  Sum_probs=116.5

Q ss_pred             EEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCc
Q psy16110        428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNH  507 (719)
Q Consensus       428 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~  507 (719)
                      +.+..+.+..+.+  +..+++|+.|++++| .+..++.  +..+++|+.|++++|.+..+++  +..+++|+.|+|++|.
T Consensus        26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           26 DNLKKKSVTDAVT--QNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HHTTCSCTTSEEC--HHHHTTCCCCBCTTC-CCCCCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             HhccCCCcccccc--hhcCCCCCEEECcCC-CCCCChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence            3444444443322  334555555555555 4555442  4556666666666666666554  5566666666666666


Q ss_pred             CCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCC
Q psy16110        508 LTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTY  587 (719)
Q Consensus       508 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  587 (719)
                      +..++  .+..+++|++|+|++|++.++  ..+..+++|+.|+|++|.++++  ..+     ..+++|+.|+|++|.+++
T Consensus        99 l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l-----~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           99 IKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVL-----SRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CCCCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGG-----GSCTTCSEEECCSSCCCC
T ss_pred             CCCCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhh-----cccCCCCEEECcCCcCCC
Confidence            66654  355666666666666666654  2356666777777777766654  122     234677777777777776


Q ss_pred             cCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccC
Q psy16110        588 LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDY  641 (719)
Q Consensus       588 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  641 (719)
                      ..|  +..+++|+.|+|++|+++.++  .+..+++|+.|+|++|++.+.+...+
T Consensus       168 ~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~  217 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQ  217 (605)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred             chh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCccccc
Confidence            655  667777777777777777764  36677777777777777766554333

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=5.8e-18  Score=170.52  Aligned_cols=172  Identities=22%  Similarity=0.269  Sum_probs=113.1

Q ss_pred             CCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEE
Q psy16110        471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLD  550 (719)
Q Consensus       471 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  550 (719)
                      +.++..++++++.+++++  .+..+++|++|++++|.++.++  .+..+++|++|++++|+++++.+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            344555566666666555  3455666777777777666665  35666777777777777766644  66677777777


Q ss_pred             ccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCC
Q psy16110        551 LSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSN  630 (719)
Q Consensus       551 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  630 (719)
                      +++|++++++...       . ++|++|++++|++++.  ..+..+++|++|++++|++++++  .+..+++|+.|++++
T Consensus        92 L~~N~l~~l~~~~-------~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~  159 (263)
T 1xeu_A           92 VNRNRLKNLNGIP-------S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHG  159 (263)
T ss_dssp             CCSSCCSCCTTCC-------C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTT
T ss_pred             CCCCccCCcCccc-------c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCC
Confidence            7777766654321       1 5677777777777765  24667777777777777777764  366677777777777


Q ss_pred             CCCcccCcccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110        631 NQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE  662 (719)
Q Consensus       631 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~  662 (719)
                      |+++++  ..+..+++|+.|++++|+++..+.
T Consensus       160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          160 NEITNT--GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             SCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             CcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence            777766  346677777777777777766644

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=3.2e-18  Score=172.46  Aligned_cols=176  Identities=25%  Similarity=0.324  Sum_probs=151.5

Q ss_pred             CCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCC
Q psy16110        495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSS  574 (719)
Q Consensus       495 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~  574 (719)
                      +.++..++++++.+++++  .+..+++|++|++++|.++.+.  .+..+++|++|++++|+++++++  +     ..+++
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l-----~~l~~   86 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--L-----KDLTK   86 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--G-----TTCSS
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--h-----ccCCC
Confidence            456778889999998887  3677899999999999998863  68889999999999999998775  3     34699


Q ss_pred             CcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCC
Q psy16110        575 LEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN  654 (719)
Q Consensus       575 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  654 (719)
                      |++|++++|++++..+  +.. ++|++|++++|++++++  .+..+++|+.|++++|++++++  .+..+++|++|++++
T Consensus        87 L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~  159 (263)
T 1xeu_A           87 LEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHG  159 (263)
T ss_dssp             CCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTT
T ss_pred             CCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCC
Confidence            9999999999998743  333 99999999999999985  3889999999999999999985  588899999999999


Q ss_pred             CcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhc
Q psy16110        655 NNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN  690 (719)
Q Consensus       655 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~  690 (719)
                      |+++++  ..+..+++|+.|++++|+++..|...+.
T Consensus       160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~~~~~  193 (263)
T 1xeu_A          160 NEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQP  193 (263)
T ss_dssp             SCCCBC--TTSTTCCCCCEEEEEEEEEECCCEECCS
T ss_pred             CcCcch--HHhccCCCCCEEeCCCCcccCCcccccc
Confidence            999998  4588999999999999999877754443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.72  E-value=5.9e-16  Score=165.88  Aligned_cols=334  Identities=16%  Similarity=0.299  Sum_probs=176.3

Q ss_pred             ccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCC---CcccCcCccCCCccCcEEECCCC
Q psy16110        176 LRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQ---IKAIEEGILKGCDNLLELRMDHN  252 (719)
Q Consensus       176 i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n  252 (719)
                      ++.|++.+|.+....|+.+.+..+ ++.     |...+|.+|.+|+.+.++.|.   ++.+...+|.+|.+|+.+.+..+
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~-----Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~  124 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTE-----IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS  124 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCE-----ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeE-----EhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc
Confidence            566777777533345777777654 222     445677778888888777653   66777777877877777776543


Q ss_pred             cCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCC
Q psy16110        253 RFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSD  332 (719)
Q Consensus       253 ~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  332 (719)
                       ++.++..+|..+.+|+.+.+.. .+..+...+|..+..|+.+.+..+ ++.+...+|.. .+|+.+.+..+ ++.+...
T Consensus       125 -~~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~  199 (394)
T 4gt6_A          125 -VTEIDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTN  199 (394)
T ss_dssp             -CSEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTT
T ss_pred             -cceehhhhhhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccc
Confidence             6677777777777777777753 356666677777777777777654 56666666654 45777766543 3333333


Q ss_pred             ccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcc
Q psy16110        333 TFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQI  412 (719)
Q Consensus       333 ~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l  412 (719)
                           +|..+.+++...........++...+...           .........         ......+..+.+. +.+
T Consensus       200 -----af~~c~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~---------~~~~~~~~~~~ip-~~v  253 (394)
T 4gt6_A          200 -----AFSECFALSTITSDSESYPAIDNVLYEKS-----------ANGDYALIR---------YPSQREDPAFKIP-NGV  253 (394)
T ss_dssp             -----TTTTCTTCCEEEECCSSSCBSSSCEEEEC-----------TTSCEEEEE---------CCTTCCCSEEECC-TTE
T ss_pred             -----hhhhccccceecccccccccccceeeccc-----------ccccccccc---------cccccccceEEcC-Ccc
Confidence                 34556666666555544433322211110           000000000         0000112222221 122


Q ss_pred             cccccCccC-CCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchh
Q psy16110        413 TTLSSSALN-YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQ  491 (719)
Q Consensus       413 ~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~  491 (719)
                      +.+....+. +..|+.+.+.++ +..+...+|.++++|+.+.+..  .+..++..+|.++.+|+.+++..+ ++.+...+
T Consensus       254 ~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a  329 (394)
T 4gt6_A          254 ARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDA  329 (394)
T ss_dssp             EEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred             eEcccceeeecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence            333333332 455555555432 3344445555566666666543  355555555666666666666532 55555555


Q ss_pred             hcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCC
Q psy16110        492 FDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN  554 (719)
Q Consensus       492 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  554 (719)
                      |.++.+|+.+.+..+ ++.+...+|.+|++|+.+++.++....   .++..+.+|+.+.+..+
T Consensus       330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred             hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence            655666666665433 555555556666666666555543221   13344445555554433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=5.2e-17  Score=155.30  Aligned_cols=129  Identities=27%  Similarity=0.307  Sum_probs=107.3

Q ss_pred             CEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcC-cccCCCCccEEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110        547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPS-SFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE  625 (719)
Q Consensus       547 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  625 (719)
                      +++++++|.++.++...+        .++++|++++|.++++.+. .|..+++|++|++++|+++++++..|.++++|++
T Consensus        11 ~~l~~s~~~l~~ip~~~~--------~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   82 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CEEEcCCCCcCcCccCCC--------CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence            788888888888776443        4788888888888888664 4788888888888888888887777888888888


Q ss_pred             EECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110        626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK  683 (719)
Q Consensus       626 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  683 (719)
                      |++++|+++++++..|.++++|++|++++|+++++++..|..+++|++|++++|++++
T Consensus        83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            8888888888888778888888888888888888888788888888888888888874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=3.9e-17  Score=156.99  Aligned_cols=150  Identities=21%  Similarity=0.235  Sum_probs=84.9

Q ss_pred             CCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCc
Q psy16110        520 LNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKL  599 (719)
Q Consensus       520 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  599 (719)
                      ++|++|++++|.++.+.  .+..+++|++|++++|.++.++  .+     ..+++|++|++++|.+++..+..+..+++|
T Consensus        44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l-----~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PI-----SGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GG-----TTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hh-----hcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            44555555555554332  3444555555555555444322  11     224566666666666665555566666666


Q ss_pred             cEEEcCCCCCCCcChhhhcCCCCCCEEECCCCC-CcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCC
Q psy16110        600 KTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ-LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSF  678 (719)
Q Consensus       600 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  678 (719)
                      ++|++++|+++...+..+..+++|++|++++|. ++.++  .+..+++|++|++++|++++++  .+..+++|++|++++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECB
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeC
Confidence            666666666666545556666666667776665 55553  3566666666666666666654  355566666666666


Q ss_pred             CcCC
Q psy16110        679 NRLE  682 (719)
Q Consensus       679 N~l~  682 (719)
                      |+++
T Consensus       191 N~i~  194 (197)
T 4ezg_A          191 QTIG  194 (197)
T ss_dssp             C---
T ss_pred             cccC
Confidence            6654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=6.5e-17  Score=155.44  Aligned_cols=154  Identities=18%  Similarity=0.279  Sum_probs=103.9

Q ss_pred             cCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCC
Q psy16110        493 DELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT  572 (719)
Q Consensus       493 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l  572 (719)
                      ..+++|++|++++|.++.++  .+..+++|++|++++|.++..  ..+..+++|++|++++|++++.....+.     .+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l  111 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLS-----GL  111 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCT-----TC
T ss_pred             hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhc-----CC
Confidence            34456666777777666665  256666777777777755443  2566677777777777776653333332     34


Q ss_pred             CCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCC-CCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEe
Q psy16110        573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNK-FNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLN  651 (719)
Q Consensus       573 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  651 (719)
                      ++|++|++++|.+++..+..+..+++|++|++++|+ ++.++  .+..+++|++|++++|++++++  .+..+++|+.|+
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~  187 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLY  187 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEE
T ss_pred             CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEE
Confidence            777777777777777666777778888888888887 76665  3677788888888888887765  467778888888


Q ss_pred             CCCCcCCC
Q psy16110        652 LNNNNIDA  659 (719)
Q Consensus       652 Ls~N~l~~  659 (719)
                      +++|++.+
T Consensus       188 l~~N~i~~  195 (197)
T 4ezg_A          188 AFSQTIGG  195 (197)
T ss_dssp             ECBC----
T ss_pred             eeCcccCC
Confidence            88887654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.68  E-value=3.7e-16  Score=147.31  Aligned_cols=133  Identities=23%  Similarity=0.279  Sum_probs=107.0

Q ss_pred             CCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110        546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE  625 (719)
Q Consensus       546 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  625 (719)
                      .+.+++++++++.++....        ++|++|++++|++++..+..|..+++|++|++++|+++.+++..+..+++|++
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI   80 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEEEecCCCCccCCCCCC--------CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence            5778888888887764432        57888888888888877777788888888888888888888777788888888


Q ss_pred             EECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcCh
Q psy16110        626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPE  686 (719)
Q Consensus       626 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~  686 (719)
                      |++++|+++++++..+..+++|++|++++|+++++++..|..+++|++|++++|+++..++
T Consensus        81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             EECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            8888888888877777888888888888888888877777778888888888888875543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.67  E-value=3.5e-15  Score=159.77  Aligned_cols=309  Identities=13%  Similarity=0.265  Sum_probs=189.6

Q ss_pred             CCcccccCCC-CCCEEECcCCCCcccCcCccCCCccCcEEECCCC---cCCcCCCCCCCCCCCCcEEEcCCCcCcccCCC
Q psy16110        209 FSTSEFHGLV-NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHN---RFTSIPSVSLNGPRALRILSMAYNRIGTLKAD  284 (719)
Q Consensus       209 ~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n---~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~  284 (719)
                      |...+|.++. .|+.+.+..+ ++.+...+|.+|.+|+.+.+..+   .++.|+..+|.++.+|+.+.+..+ ++.+...
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~  131 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE  131 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred             cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence            3446788874 5999999764 88888899999999999998776   377888888888888888877654 7777778


Q ss_pred             cccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCcccccccc
Q psy16110        285 SFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQ  364 (719)
Q Consensus       285 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~  364 (719)
                      +|..+.+|+.+.+.. .+..+...+|..+.+|+.+.+..+ ++.++..+|.     . .+|+.+.+..+ ++.+...+| 
T Consensus       132 aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-----~-~~l~~i~ip~~-~~~i~~~af-  201 (394)
T 4gt6_A          132 AFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-----G-TALTQIHIPAK-VTRIGTNAF-  201 (394)
T ss_dssp             TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-----T-CCCSEEEECTT-CCEECTTTT-
T ss_pred             hhhhhcccccccccc-eeeeecccceecccccccccccce-eeEecccccc-----c-cceeEEEECCc-ccccccchh-
Confidence            888888899888864 466777788888888888888754 6667666443     2 46777777643 344444443 


Q ss_pred             CcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccc-cCccCCCCccEEEccCCCCCCcCcccc
Q psy16110        365 GTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLS-SSALNYKLLTKLDLSHNNLKELEPTAF  443 (719)
Q Consensus       365 ~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~  443 (719)
                                ..+..++................+.         .+...... ........+..+.+. +.++.+...+|
T Consensus       202 ----------~~c~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF  261 (394)
T 4gt6_A          202 ----------SECFALSTITSDSESYPAIDNVLYE---------KSANGDYALIRYPSQREDPAFKIP-NGVARIETHAF  261 (394)
T ss_dssp             ----------TTCTTCCEEEECCSSSCBSSSCEEE---------ECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTT
T ss_pred             ----------hhccccceecccccccccccceeec---------ccccccccccccccccccceEEcC-CcceEccccee
Confidence                      3355666666555433332221000         00000000 000112233334432 23344445566


Q ss_pred             cCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCC
Q psy16110        444 TNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT  523 (719)
Q Consensus       444 ~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  523 (719)
                      .++..|+.+.+.++  ...++..+|.++..|+.+.+. +.++.++..+|.++.+|+.+.+..+ ++.+...+|.+|.+|+
T Consensus       262 ~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          262 DSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             eecccccEEecccc--cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            66666666666543  345555566666666666664 3455555566666666666666543 5555555666666666


Q ss_pred             EEeCCCCccccccCCccCCCCCCCEEEccCC
Q psy16110        524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFN  554 (719)
Q Consensus       524 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  554 (719)
                      .+.+..+ ++.+...+|.++++|+.+++.++
T Consensus       338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             EEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             EEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            6666432 45555555666666666665554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=5.9e-16  Score=147.90  Aligned_cols=132  Identities=26%  Similarity=0.365  Sum_probs=112.5

Q ss_pred             CEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCC-cCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccE
Q psy16110        523 TYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGD-YFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKT  601 (719)
Q Consensus       523 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  601 (719)
                      +++++++|+++.+.. .+.  .+|++|++++|+++.++.. .+.     .+++|++|+|++|+++++.|.+|..+++|++
T Consensus        11 ~~l~~s~~~l~~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   82 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-DIP--LHTTELLLNDNELGRISSDGLFG-----RLPHLVKLELKRNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCCSSCCS-CCC--TTCSEEECCSCCCCSBCCSCSGG-----GCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CEEEcCCCCcCcCcc-CCC--CCCCEEECCCCcCCccCCccccc-----cCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence            789999999877643 332  3899999999999887764 343     3589999999999999998899999999999


Q ss_pred             EEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110        602 LKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE  662 (719)
Q Consensus       602 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~  662 (719)
                      |+|++|+++++++..|.++++|++|++++|+++++.+..+..+++|++|++++|++.+..+
T Consensus        83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            9999999999988888899999999999999999888889999999999999999987643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=3e-19  Score=199.33  Aligned_cols=201  Identities=18%  Similarity=0.210  Sum_probs=126.1

Q ss_pred             CCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCc-------------CCCCChhhhcCCCCCCEEe-CCCCcccccc
Q psy16110        471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNH-------------LTEIPEMMFKNLLNLTYLD-LSNNNIVNLR  536 (719)
Q Consensus       471 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-Ls~n~i~~~~  536 (719)
                      ++.|+.|++++|+++.+|. .++.+++|+.|++++|.             ..+..+..+..+++|+.|+ ++.|.+.   
T Consensus       348 ~~~L~~L~Ls~n~L~~Lp~-~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~---  423 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD---  423 (567)
T ss_dssp             TTTSSSCCCCHHHHHHHHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH---
T ss_pred             CccceeccCChhhHHhhHH-HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc---
Confidence            3455555555555554432 34455555555554332             2233334445555555555 4443321   


Q ss_pred             CCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhh
Q psy16110        537 VGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKEL  616 (719)
Q Consensus       537 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  616 (719)
                              .|+.+.+.+|.++.++.           ..|+.|++++|.++++ |. +..+++|++|+|++|+++.+|. .
T Consensus       424 --------~L~~l~l~~n~i~~l~~-----------~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~lp~-~  481 (567)
T 1dce_A          424 --------DLRSKFLLENSVLKMEY-----------ADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRALPP-A  481 (567)
T ss_dssp             --------HHHHHHHHHHHHHHHHH-----------TTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCCCCG-G
T ss_pred             --------hhhhhhhhcccccccCc-----------cCceEEEecCCCCCCC-cC-ccccccCcEeecCcccccccch-h
Confidence                    22333344444443321           2477788888877775 44 7778888888888888887765 4


Q ss_pred             hcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCC-cccCCCCCCCcEEECCCCcCCCcChH---hhcCc
Q psy16110        617 ILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS-ETCFFNSSQLQIINLSFNRLEKLPER---LFNTF  692 (719)
Q Consensus       617 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~~---~~~~l  692 (719)
                      +.++++|+.|+|++|.+++++  .+.++++|+.|+|++|++++++ |..|..+++|+.|+|++|+++.+|+.   ++..+
T Consensus       482 ~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l  559 (567)
T 1dce_A          482 LAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML  559 (567)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred             hhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence            677888888888888888765  5777888888888888888875 66777788888888888888766542   34456


Q ss_pred             ccc-EEec
Q psy16110        693 LYT-NYDM  699 (719)
Q Consensus       693 ~~L-~L~l  699 (719)
                      ++| .|++
T Consensus       560 p~L~~L~l  567 (567)
T 1dce_A          560 PSVSSILT  567 (567)
T ss_dssp             TTCSEEEC
T ss_pred             cccCccCC
Confidence            777 6653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.66  E-value=1.2e-15  Score=143.71  Aligned_cols=127  Identities=24%  Similarity=0.359  Sum_probs=90.4

Q ss_pred             CcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCC
Q psy16110        575 LEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN  654 (719)
Q Consensus       575 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  654 (719)
                      .+.++++++.++.+. ..+  .++|++|++++|+++++++..+..+++|++|++++|.++++++..|.++++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p-~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP-TGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCC-TTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCC-CCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            456777777776653 222  35677777777777777766667777777777777777777766667777777777777


Q ss_pred             CcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCce
Q psy16110        655 NNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLV  704 (719)
Q Consensus       655 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l  704 (719)
                      |+++++++..|..+++|++|++++|+++.+|+..|..+++| +|++++|++
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            77777776666777777777777777777777767777777 777777777

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=1e-15  Score=146.31  Aligned_cols=128  Identities=23%  Similarity=0.313  Sum_probs=98.9

Q ss_pred             CEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEE
Q psy16110        547 KRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEI  626 (719)
Q Consensus       547 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  626 (719)
                      +.+++++|.++.++....        ++|++|++++|.++.+ |..|..+++|++|++++|+++.+++..|.++++|++|
T Consensus        13 ~~l~~~~~~l~~ip~~~~--------~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L   83 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--------RDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL   83 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--------TTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CEEEcCCCCCCcCCCCCC--------CCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence            567777777776664432        5677888888887755 5677788888888888888888877777888888888


Q ss_pred             ECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCC
Q psy16110        627 DLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEK  683 (719)
Q Consensus       627 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  683 (719)
                      +|++|+++++++..|.++++|++|+|++|+++.+++..|..+++|+.|++++|++.+
T Consensus        84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            888888888877778888888888888888888777777778888888888887763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=4.9e-16  Score=145.11  Aligned_cols=134  Identities=26%  Similarity=0.242  Sum_probs=67.9

Q ss_pred             CCCCEEEccCCcCC--cccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCC
Q psy16110        544 PSMKRLDLSFNKLT--TFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLS  621 (719)
Q Consensus       544 ~~L~~L~L~~n~l~--~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  621 (719)
                      ++|++|++++|.++  .++.. +     ..+++|++|++++|.+++.  ..+..+++|++|++++|+++...+..+..++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~-~-----~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGL-T-----AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSC-C-----GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             ccCCEEECCCCCCChhhHHHH-H-----HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence            45555555555554  33221 1     1235555555555555554  4455555555555555555553333344455


Q ss_pred             CCCEEECCCCCCcccCc-ccCCCCCCCCEEeCCCCcCCCCCc---ccCCCCCCCcEEECCCCcCCCcC
Q psy16110        622 YLQEIDLSNNQLKTIDD-YDYGYLPRLRKLNLNNNNIDAISE---TCFFNSSQLQIINLSFNRLEKLP  685 (719)
Q Consensus       622 ~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~i~  685 (719)
                      +|++|++++|.+++++. ..+..+++|++|++++|+++++++   ..+..+++|++|++++|.+..+|
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            55555555555555432 344555555555555555555544   34445555555555555555444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=9.4e-19  Score=195.30  Aligned_cols=216  Identities=20%  Similarity=0.179  Sum_probs=144.8

Q ss_pred             CCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccE
Q psy16110        421 NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKY  500 (719)
Q Consensus       421 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~  500 (719)
                      ..+.|+.|++++|.+..+ |..++.+++|+.|++++|..+..++.       .     +..+...+..+..++.+++|+.
T Consensus       347 ~~~~L~~L~Ls~n~L~~L-p~~i~~l~~L~~L~l~~n~~l~~l~~-------l-----l~~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVL-QSELESCKELQELEPENKWCLLTIIL-------L-----MRALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHH-------H-----HHHHCTGGGHHHHHHHHHHHHH
T ss_pred             cCccceeccCChhhHHhh-HHHHHHHHHHHHhccccchhhhhHHH-------H-----HHhcccccCCHHHHHHHHhccc
Confidence            466777788887777655 45567777777777765521111110       0     0111234445566777788888


Q ss_pred             EE-ccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEE
Q psy16110        501 LC-LAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELN  579 (719)
Q Consensus       501 L~-L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~  579 (719)
                      |+ ++.|.+.           .|+.+.+++|.++.+.+.      .|+.|+|++|.+++++.  +.     .+++|+.|+
T Consensus       414 L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~~------~L~~L~Ls~n~l~~lp~--~~-----~l~~L~~L~  469 (567)
T 1dce_A          414 VDPMRAAYLD-----------DLRSKFLLENSVLKMEYA------DVRVLHLAHKDLTVLCH--LE-----QLLLVTHLD  469 (567)
T ss_dssp             HCGGGHHHHH-----------HHHHHHHHHHHHHHHHHT------TCSEEECTTSCCSSCCC--GG-----GGTTCCEEE
T ss_pred             Ccchhhcccc-----------hhhhhhhhcccccccCcc------CceEEEecCCCCCCCcC--cc-----ccccCcEee
Confidence            87 5555432           334445556666655332      37778888887777653  32     357888888


Q ss_pred             CcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccC-cccCCCCCCCCEEeCCCCcCC
Q psy16110        580 LNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTID-DYDYGYLPRLRKLNLNNNNID  658 (719)
Q Consensus       580 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l~  658 (719)
                      |++|.++.+ |..++.+++|++|+|++|+++++|  .+.++++|++|+|++|+++++. +..+..+++|+.|+|++|+++
T Consensus       470 Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          470 LSHNRLRAL-PPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             CCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCccccccc-chhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            888888844 677888888888888888888876  4788888888888888888875 667888888888888888888


Q ss_pred             CCCccc---CCCCCCCcEEEC
Q psy16110        659 AISETC---FFNSSQLQIINL  676 (719)
Q Consensus       659 ~~~~~~---~~~l~~L~~L~L  676 (719)
                      +.++..   +..+++|+.||+
T Consensus       547 ~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          547 QEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCccHHHHHHHHCcccCccCC
Confidence            876532   233678888864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.6e-15  Score=141.60  Aligned_cols=137  Identities=20%  Similarity=0.208  Sum_probs=111.1

Q ss_pred             CCCCCEEeCCCCccc-cccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCC
Q psy16110        519 LLNLTYLDLSNNNIV-NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHS  597 (719)
Q Consensus       519 l~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  597 (719)
                      .++|++|++++|.++ +..|..+..+++|++|++++|.++.+  ..+     ..+++|++|++++|.+++..|..+..++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL-----PKLPKLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC-----CCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh-----ccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence            467888888888887 44466677888888888888888765  222     3468899999999998887677777789


Q ss_pred             CccEEEcCCCCCCCcCh-hhhcCCCCCCEEECCCCCCcccCc---ccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110        598 KLKTLKLAFNKFNYFPK-ELILGLSYLQEIDLSNNQLKTIDD---YDYGYLPRLRKLNLNNNNIDAISE  662 (719)
Q Consensus       598 ~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~Ls~N~l~~~~~  662 (719)
                      +|++|++++|+++.++. ..+..+++|++|++++|+++++++   ..+..+++|++|++++|.+.+++.
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            99999999999988764 568889999999999999998876   568889999999999999887764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.59  E-value=1.2e-13  Score=147.08  Aligned_cols=138  Identities=16%  Similarity=0.269  Sum_probs=88.9

Q ss_pred             CCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEE
Q psy16110        422 YKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYL  501 (719)
Q Consensus       422 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L  501 (719)
                      ...|+.+.+..+ +..+...+|.++..|+.+.+..+  +..++..+|.++.+|+.+.+.. .+..++..+|.++.+|+.+
T Consensus       216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEE
T ss_pred             ccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceeccccccccccccccc
Confidence            455566655432 44555556666667777766553  5566666677777777777654 3566666667777777777


Q ss_pred             EccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCC
Q psy16110        502 CLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFN  565 (719)
Q Consensus       502 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  565 (719)
                      .+.++.++.++..+|.+|.+|+.+.+..+ ++.+...+|.++++|+.+.+..+ ++.+....|.
T Consensus       292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~  353 (379)
T 4h09_A          292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFE  353 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence            77766677777777777777777777543 66666667777777777777543 5555555553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=1.3e-15  Score=139.05  Aligned_cols=126  Identities=20%  Similarity=0.181  Sum_probs=80.1

Q ss_pred             CCCcEEECcCCCCC-CcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEe
Q psy16110        573 SSLEELNLNNNELT-YLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLN  651 (719)
Q Consensus       573 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  651 (719)
                      ++|++|++++|.++ +..|..+..+++|++|++++|+++.+  ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45666666666665 44455566666666666666666666  3456666677777777666664444455566677777


Q ss_pred             CCCCcCCCCC-cccCCCCCCCcEEECCCCcCCCcCh---HhhcCcccc-EEecC
Q psy16110        652 LNNNNIDAIS-ETCFFNSSQLQIINLSFNRLEKLPE---RLFNTFLYT-NYDMA  700 (719)
Q Consensus       652 Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L-~L~l~  700 (719)
                      +++|++++++ +..+..+++|++|++++|+++.+++   ..|..+++| +|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            7777766653 2456666777777777777766665   556666777 66665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=4.7e-16  Score=178.99  Aligned_cols=119  Identities=30%  Similarity=0.302  Sum_probs=57.1

Q ss_pred             CCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCC
Q psy16110        466 GGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS  545 (719)
Q Consensus       466 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~  545 (719)
                      ..|..++.|+.|+|++|.+..++...+ .+++|++|+|++|.++.+|. .|..+++|++|+|++|.++.+ |..+..+++
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~  294 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSL-PAELGSCFQ  294 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSSC-CSSGGGGTT
T ss_pred             hhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCcc-ChhhcCCCC
Confidence            334455555555555555555544333 45555555555555554443 244555555555555555533 444555555


Q ss_pred             CCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcc
Q psy16110        546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSF  593 (719)
Q Consensus       546 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  593 (719)
                      |++|+|++|.++.++.. +.     .+++|++|+|++|.+++.+|..+
T Consensus       295 L~~L~L~~N~l~~lp~~-~~-----~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          295 LKYFYFFDNMVTTLPWE-FG-----NLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CSEEECCSSCCCCCCSS-TT-----SCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCEEECCCCCCCccChh-hh-----cCCCccEEeCCCCccCCCChHHH
Confidence            55555555555444332 21     23455555555555554444333

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=4e-16  Score=179.57  Aligned_cols=151  Identities=24%  Similarity=0.194  Sum_probs=69.1

Q ss_pred             hhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcc
Q psy16110        514 MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSF  593 (719)
Q Consensus       514 ~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  593 (719)
                      ..|..++.|+.|+|++|.+..+. ..+..+++|++|+|++|.++.++..+ .     .+++|++|+|++|.++.+ |..|
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~lp~~~-~-----~l~~L~~L~Ls~N~l~~l-p~~~  289 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLTELPAEI-K-----NLSNLRVLDLSHNRLTSL-PAEL  289 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCSCCCGGG-G-----GGTTCCEEECTTSCCSSC-CSSG
T ss_pred             hhhccCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCcccChhh-h-----CCCCCCEEeCcCCcCCcc-Chhh
Confidence            33445555555555555555332 22234555555555555555443221 1     235555555555555533 5555


Q ss_pred             cCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCC-CCCEEeCCCCcCCCCCcccCCCCCCCc
Q psy16110        594 TIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLP-RLRKLNLNNNNIDAISETCFFNSSQLQ  672 (719)
Q Consensus       594 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~  672 (719)
                      ..+++|++|+|++|.++.+|.. |..+++|+.|+|++|.+++.++..+..+. .+..+++++|.+++.+|      ..|+
T Consensus       290 ~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~  362 (727)
T 4b8c_D          290 GSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERR  362 (727)
T ss_dssp             GGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC--
T ss_pred             cCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccc
Confidence            5556666666666655555544 55556666666666666554443333221 11234555555555443      2444


Q ss_pred             EEECCCC
Q psy16110        673 IINLSFN  679 (719)
Q Consensus       673 ~L~Ls~N  679 (719)
                      .|++++|
T Consensus       363 ~l~l~~n  369 (727)
T 4b8c_D          363 FIEINTD  369 (727)
T ss_dssp             -------
T ss_pred             eeEeecc
Confidence            5555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.57  E-value=1.1e-14  Score=136.02  Aligned_cols=109  Identities=25%  Similarity=0.291  Sum_probs=83.6

Q ss_pred             CCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCC
Q psy16110        574 SLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLN  653 (719)
Q Consensus       574 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  653 (719)
                      +.+.+++++|.++.+ |..+  .++|++|+|++|+++++++..|.++++|++|+|++|+++++++..|.++++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            356788888888776 4333  3777888888888888777777778888888888888888777777778888888888


Q ss_pred             CCcCCCCCcccCCCCCCCcEEECCCCcCCCcC
Q psy16110        654 NNNIDAISETCFFNSSQLQIINLSFNRLEKLP  685 (719)
Q Consensus       654 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~  685 (719)
                      +|+++++++..|..+++|++|+|++|+++..+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            88888877777777788888888888777554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=4.2e-15  Score=139.85  Aligned_cols=136  Identities=21%  Similarity=0.287  Sum_probs=90.9

Q ss_pred             ccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhc
Q psy16110        539 SLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELIL  618 (719)
Q Consensus       539 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  618 (719)
                      .+..+++|++|++++|+++.++. ...     ..++|++|++++|.+++.  ..+..+++|++|++++|+++.+++..+.
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~-----~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~   85 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIEN-LGA-----TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQ   85 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-GGG-----GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             hcCCcCCceEEEeeCCCCchhHH-hhh-----cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhh
Confidence            34566777788888777776532 111     124777777777777765  4567777777777777777777666566


Q ss_pred             CCCCCCEEECCCCCCcccCc-ccCCCCCCCCEEeCCCCcCCCCCcc---cCCCCCCCcEEECCCCcCC
Q psy16110        619 GLSYLQEIDLSNNQLKTIDD-YDYGYLPRLRKLNLNNNNIDAISET---CFFNSSQLQIINLSFNRLE  682 (719)
Q Consensus       619 ~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~  682 (719)
                      .+++|++|++++|.++.++. ..+..+++|+.|++++|+++.+++.   .+..+++|+.||+++|...
T Consensus        86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            77777777777777766554 2466677777777777777666543   3556677777777777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=7.3e-15  Score=134.12  Aligned_cols=111  Identities=21%  Similarity=0.212  Sum_probs=50.6

Q ss_pred             CCCCEEeCCCCccc-cccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCC
Q psy16110        520 LNLTYLDLSNNNIV-NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSK  598 (719)
Q Consensus       520 ~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  598 (719)
                      ++|++|++++|.++ +..|..+..+++|++|++++|.++++  ..+     ..+++|++|++++|.+++..|..+..+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~-----~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL-----PKLNKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC-----CCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh-----hcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence            45556666666555 33344455555555555555555443  111     22344455555544444433433334444


Q ss_pred             ccEEEcCCCCCCCcC-hhhhcCCCCCCEEECCCCCCcccC
Q psy16110        599 LKTLKLAFNKFNYFP-KELILGLSYLQEIDLSNNQLKTID  637 (719)
Q Consensus       599 L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~  637 (719)
                      |++|++++|++++++ +..+..+++|++|++++|++++++
T Consensus        90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred             CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence            444444444444432 123344444444444444444433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.54  E-value=5e-13  Score=142.33  Aligned_cols=317  Identities=17%  Similarity=0.221  Sum_probs=191.2

Q ss_pred             cccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCcc
Q psy16110        213 EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWL  292 (719)
Q Consensus       213 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  292 (719)
                      .+....+|+.+.+.. .++.|+..+|.+|.+|+.+.+..+ ++.|+..+|.++ +|+.+.+.. .++.+...+|... +|
T Consensus        41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L  115 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DL  115 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CC
T ss_pred             ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccC-Cc
Confidence            355667788888865 377888888888888888888644 777777777776 566666653 3666666666554 57


Q ss_pred             CEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCccccccc
Q psy16110        293 ERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFS  372 (719)
Q Consensus       293 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~  372 (719)
                      +.+.+..+ +..+...+|.+. +|+.+.+.. .++.+...     +|..+.+++.+.+..+....+....+         
T Consensus       116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~-----~f~~~~~l~~~~~~~~~~~~~~~~~~---------  178 (379)
T 4h09_A          116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDG-----IGYKAENLEKIEVSSNNKNYVAENYV---------  178 (379)
T ss_dssp             SEEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSC-----TTTTCTTCCEEEECTTCSSEEEETTE---------
T ss_pred             ccccCCCc-cccccccccccc-eeeeeeccc-eeeccccc-----hhcccccccccccccccceeecccce---------
Confidence            77777553 444555555544 344444332 23333333     23344555555444332211110000         


Q ss_pred             ccccCCCccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEE
Q psy16110        373 FFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHL  452 (719)
Q Consensus       373 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  452 (719)
                                               ..          +..............+..+.+.. ....+....+..+.+|+.+
T Consensus       179 -------------------------~~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~f~~~~~l~~i  222 (379)
T 4h09_A          179 -------------------------LY----------NKNKTILESYPAAKTGTEFTIPS-TVKTVTAYGFSYGKNLKKI  222 (379)
T ss_dssp             -------------------------EE----------ETTSSEEEECCTTCCCSEEECCT-TCCEECTTTTTTCSSCSEE
T ss_pred             -------------------------ec----------ccccceecccccccccccccccc-ceeEEeeccccccccccee
Confidence                                     00          00000000111233344444433 2233444556667777777


Q ss_pred             eCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcc
Q psy16110        453 NLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNI  532 (719)
Q Consensus       453 ~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i  532 (719)
                      .+..+  +..++...|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +..++..+|.+|++|+.+.+.++.+
T Consensus       223 ~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i  298 (379)
T 4h09_A          223 TITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAI  298 (379)
T ss_dssp             ECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTC
T ss_pred             eeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccccccc
Confidence            77653  56666677777778888877665 66777777777778888877643 6667777777888888888877777


Q ss_pred             ccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCC
Q psy16110        533 VNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSK  598 (719)
Q Consensus       533 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  598 (719)
                      +.+...+|.++.+|+.+.|..+ ++.++...|.     +|++|+.+.+..+ ++.+...+|.++..
T Consensus       299 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~-----~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          299 ETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFK-----NCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-----TCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             ceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhh-----CCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            7777777888888888887643 5656555553     4677777777643 66666677776643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.54  E-value=2.4e-14  Score=134.16  Aligned_cols=109  Identities=24%  Similarity=0.275  Sum_probs=92.4

Q ss_pred             CcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCC
Q psy16110        575 LEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN  654 (719)
Q Consensus       575 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  654 (719)
                      -+.+++++|.++.+ |..+.  ++|++|++++|+++++++..|.++++|++|+|++|+++++++..|.++++|++|+|++
T Consensus        14 ~~~l~~~~n~l~~i-P~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASV-PAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCcc-CCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            46889999988776 44443  7889999999999988888888889999999999999988887788889999999999


Q ss_pred             CcCCCCCcccCCCCCCCcEEECCCCcCCCcCh
Q psy16110        655 NNIDAISETCFFNSSQLQIINLSFNRLEKLPE  686 (719)
Q Consensus       655 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~  686 (719)
                      |+|+++++..|..+++|++|+|++|++...+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99998888778888999999999998887664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=7.5e-15  Score=138.16  Aligned_cols=129  Identities=15%  Similarity=0.145  Sum_probs=57.3

Q ss_pred             CCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeC
Q psy16110        573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNL  652 (719)
Q Consensus       573 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  652 (719)
                      ++|++|++++|.++.+ +......++|++|++++|+++++  ..+..+++|++|++++|.++++++..+..+++|++|++
T Consensus        19 ~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             TSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            4444444544444433 22111222444455544444444  22444444445555444444444333344444444555


Q ss_pred             CCCcCCCCCc-ccCCCCCCCcEEECCCCcCCCcChH---hhcCcccc-EEecCCCce
Q psy16110        653 NNNNIDAISE-TCFFNSSQLQIINLSFNRLEKLPER---LFNTFLYT-NYDMAPNLV  704 (719)
Q Consensus       653 s~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~---~~~~l~~L-~L~l~~N~l  704 (719)
                      ++|+++.+++ ..+..+++|+.|++++|+++.+|..   ++..+++| .+++++|+.
T Consensus        96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            4444444332 2344444444455544444444433   34444444 444444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=2.3e-13  Score=126.99  Aligned_cols=108  Identities=27%  Similarity=0.330  Sum_probs=79.8

Q ss_pred             CCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110        546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE  625 (719)
Q Consensus       546 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  625 (719)
                      .+++++++|.++.++....        ++|++|+|++|+++++.|..|..+++|++|+|++|+++.+++..|..+++|++
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEEEeCCCCcCccCccCC--------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence            4677777777777665432        56777777777777777777777777777777777777777777777777777


Q ss_pred             EECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCC
Q psy16110        626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS  661 (719)
Q Consensus       626 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  661 (719)
                      |+|++|+++++++..|.++++|++|+|++|++....
T Consensus        83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            777777777777766777777777777777776654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.47  E-value=3.2e-13  Score=126.41  Aligned_cols=109  Identities=27%  Similarity=0.337  Sum_probs=87.6

Q ss_pred             CCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110        546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE  625 (719)
Q Consensus       546 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  625 (719)
                      -+.+++++|+++.++....        ++|++|+|++|+++++.|..|..+++|++|+|++|+++++++..|..+++|++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ   85 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CcEEEeCCCCCCccCCCcC--------CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence            3678888888887765442        67888888888888887888888888888888888888888877788888888


Q ss_pred             EECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCc
Q psy16110        626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE  662 (719)
Q Consensus       626 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~  662 (719)
                      |+|++|+++++++..|..+++|++|+|++|++...+.
T Consensus        86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             EECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            8888888888887678888888888888888876653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.38  E-value=7.6e-13  Score=139.08  Aligned_cols=106  Identities=23%  Similarity=0.266  Sum_probs=81.0

Q ss_pred             EEECcCC-CCCCcCcCcccCCCCccEEEcCC-CCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCC
Q psy16110        577 ELNLNNN-ELTYLFPSSFTIHSKLKTLKLAF-NKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN  654 (719)
Q Consensus       577 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  654 (719)
                      .++++++ .++++ |. +..+++|++|+|++ |+++.+++..|.++++|+.|+|++|+|+++++..|.++++|++|+|++
T Consensus        12 ~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4677777 77775 55 77778888888875 888888877778888888888888888887777777788888888888


Q ss_pred             CcCCCCCcccCCCCCCCcEEECCCCcCCCcC
Q psy16110        655 NNIDAISETCFFNSSQLQIINLSFNRLEKLP  685 (719)
Q Consensus       655 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~  685 (719)
                      |+|+++++..|..++ |+.|+|++|++.+..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCSC  119 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence            888877777666555 888888888777544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=1e-15  Score=147.10  Aligned_cols=41  Identities=32%  Similarity=0.415  Sum_probs=19.8

Q ss_pred             hcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCc
Q psy16110        516 FKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT  558 (719)
Q Consensus       516 ~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  558 (719)
                      +..+++|++|++++|+++++ | .+..+++|++|++++|.++.
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~   84 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK   84 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECS
T ss_pred             HhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCccc
Confidence            44455555555555555443 2 44444455555555544443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=5.6e-14  Score=148.34  Aligned_cols=116  Identities=18%  Similarity=0.196  Sum_probs=56.6

Q ss_pred             CCcEEECcCCCCCCcCcCcc-----cCCCCccEEEcCCCCCCCcCh----hhhcCCCCCCEEECCCCCCcccC----ccc
Q psy16110        574 SLEELNLNNNELTYLFPSSF-----TIHSKLKTLKLAFNKFNYFPK----ELILGLSYLQEIDLSNNQLKTID----DYD  640 (719)
Q Consensus       574 ~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~----~~~  640 (719)
                      +|++|+|++|.++......+     ...++|++|+|++|.++....    .++..+++|++|+|++|.+++..    ...
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            45555555555543322222     124455555555555544222    12244555666666666655322    223


Q ss_pred             CCCCCCCCEEeCCCCcCCCCCc----ccCCCCCCCcEEECCCCcCCCcChHhh
Q psy16110        641 YGYLPRLRKLNLNNNNIDAISE----TCFFNSSQLQIINLSFNRLEKLPERLF  689 (719)
Q Consensus       641 l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~i~~~~~  689 (719)
                      +...++|+.|+|++|+|+....    ..+..+++|++|||++|.|+......+
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            4445566666666666654322    122334566666666666654443333

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.30  E-value=1.1e-14  Score=139.90  Aligned_cols=152  Identities=17%  Similarity=0.191  Sum_probs=92.6

Q ss_pred             CCCCCEEeCCCCccccccCC------ccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCc
Q psy16110        519 LLNLTYLDLSNNNIVNLRVG------SLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSS  592 (719)
Q Consensus       519 l~~L~~L~Ls~n~i~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  592 (719)
                      ...++.++++.+.+.+..+.      .+..+++|++|++++|.++.++  .+     ..+++|++|++++|.++.+ |..
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~-----~~l~~L~~L~l~~n~l~~l-~~~   88 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SL-----SGMENLRILSLGRNLIKKI-ENL   88 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CH-----HHHTTCCEEEEEEEEECSC-SSH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--cc-----ccCCCCCEEECCCCCcccc-cch
Confidence            34445555555555444343      5666667777777777666644  22     2346677777777776644 455


Q ss_pred             ccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCc-ccCCCCCCCCEEeCCCCcCCCCCcc--------
Q psy16110        593 FTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDD-YDYGYLPRLRKLNLNNNNIDAISET--------  663 (719)
Q Consensus       593 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~--------  663 (719)
                      +..+++|++|++++|++++++  .+..+++|++|++++|++++++. ..+..+++|++|++++|++++.++.        
T Consensus        89 ~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~  166 (198)
T 1ds9_A           89 DAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR  166 (198)
T ss_dssp             HHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred             hhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence            555667777777777776654  35666677777777777765543 3466677777777777776655432        


Q ss_pred             --cCCCCCCCcEEECCCCcCC
Q psy16110        664 --CFFNSSQLQIINLSFNRLE  682 (719)
Q Consensus       664 --~~~~l~~L~~L~Ls~N~l~  682 (719)
                        .+..+++|+.||  +|.++
T Consensus       167 ~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          167 IEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHCSSCSEEC--CGGGT
T ss_pred             HHHHHhCCCcEEEC--CcccC
Confidence              255667777776  55554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=9.7e-12  Score=130.58  Aligned_cols=105  Identities=19%  Similarity=0.234  Sum_probs=71.6

Q ss_pred             EEEccCC-cCCcccCCcCCCCCCCCCCCCcEEECcC-CCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCE
Q psy16110        548 RLDLSFN-KLTTFKGDYFNTKSKPNTSSLEELNLNN-NELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQE  625 (719)
Q Consensus       548 ~L~L~~n-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  625 (719)
                      .++++++ .++.+|.  +.     .+++|++|+|++ |.++++.+..|..+++|++|+|++|+|+++++..|.++++|+.
T Consensus        12 ~v~~~~~n~l~~ip~--l~-----~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~   84 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH--LP-----GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (347)
T ss_dssp             CEECCSSCCCTTTTT--SC-----SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             EEEcCCCCCCCccCC--CC-----CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence            4566666 6666654  32     236677777775 7777776667777777777777777777777766777777777


Q ss_pred             EECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCC
Q psy16110        626 IDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAI  660 (719)
Q Consensus       626 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  660 (719)
                      |+|++|+|+++++..|..++ |+.|+|++|++...
T Consensus        85 L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           85 LNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             EECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             EeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            77777777777666565555 77777777777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=5.2e-13  Score=140.91  Aligned_cols=134  Identities=16%  Similarity=0.115  Sum_probs=102.3

Q ss_pred             CCCcEEECcCCCCCCcCcCcc-cCCCCccEEEcCCCCCCCcChhhh-----cCCCCCCEEECCCCCCcccCc----ccCC
Q psy16110        573 SSLEELNLNNNELTYLFPSSF-TIHSKLKTLKLAFNKFNYFPKELI-----LGLSYLQEIDLSNNQLKTIDD----YDYG  642 (719)
Q Consensus       573 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~----~~l~  642 (719)
                      ++|++|+|++|.++......+ ..+++|++|+|++|.++......+     ...++|++|+|++|.++....    ..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            578888888887765433233 245789999999999987555444     457899999999999986332    2346


Q ss_pred             CCCCCCEEeCCCCcCCCCC----cccCCCCCCCcEEECCCCcCCCcChH----hhcCcccc-EEecCCCceee
Q psy16110        643 YLPRLRKLNLNNNNIDAIS----ETCFFNSSQLQIINLSFNRLEKLPER----LFNTFLYT-NYDMAPNLVFQ  706 (719)
Q Consensus       643 ~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~i~~~----~~~~l~~L-~L~l~~N~l~~  706 (719)
                      .+++|++|+|++|++++..    ...+..+++|++|+|++|.++.....    .+..++.| +|+|++|++..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            7889999999999998643    34566778999999999999865433    34567899 99999999965

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.63  E-value=8.9e-09  Score=107.55  Aligned_cols=84  Identities=13%  Similarity=0.235  Sum_probs=52.2

Q ss_pred             CCCCCCEEECCCCCCcccCcccC---CCCCCCCEEeCCCCcCCCCCc----ccCCCCCCCcEEECCCCcCCCcChHhhcC
Q psy16110        619 GLSYLQEIDLSNNQLKTIDDYDY---GYLPRLRKLNLNNNNIDAISE----TCFFNSSQLQIINLSFNRLEKLPERLFNT  691 (719)
Q Consensus       619 ~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~  691 (719)
                      .+++|++|++++|.+.+.....+   ..+++|++|+|+.|.+.+...    ..+.++++|+.|+|++|.++..-...+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            46778888888877764221111   246788888888888776422    22234678888888888776433333332


Q ss_pred             cccc-EEecCCCc
Q psy16110        692 FLYT-NYDMAPNL  703 (719)
Q Consensus       692 l~~L-~L~l~~N~  703 (719)
                      .- . .+++++++
T Consensus       330 al-g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL-PMKIDVSDSQ  341 (362)
T ss_dssp             HC-CSEEECCSBC
T ss_pred             Hc-CCEEEecCCc
Confidence            10 3 78888877

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.55  E-value=2.6e-08  Score=103.97  Aligned_cols=59  Identities=20%  Similarity=0.240  Sum_probs=29.2

Q ss_pred             hhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCcc--CCCCCCCEEEcc
Q psy16110        491 QFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL--YGLPSMKRLDLS  552 (719)
Q Consensus       491 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l--~~l~~L~~L~L~  552 (719)
                      .+..+++|+.|++++|.-..++.  +. +++|++|++..|.+.......+  ..+++|+.|+|+
T Consensus       167 ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            34455666666666652112222  22 4566666666665544322222  245666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.39  E-value=6.1e-08  Score=91.24  Aligned_cols=89  Identities=10%  Similarity=0.086  Sum_probs=43.4

Q ss_pred             cCCCCccEEEcCCCCCCCcC----hhhhcCCCCCCEEECCCCCCcccC----cccCCCCCCCCEEeC--CCCcCCCCC--
Q psy16110        594 TIHSKLKTLKLAFNKFNYFP----KELILGLSYLQEIDLSNNQLKTID----DYDYGYLPRLRKLNL--NNNNIDAIS--  661 (719)
Q Consensus       594 ~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L--s~N~l~~~~--  661 (719)
                      ...++|++|+|++|.+....    ..++...++|++|+|++|.|+...    ...+...+.|++|+|  ++|.+....  
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            33445555555555544311    122333455666666666555321    223444455666666  556555431  


Q ss_pred             --cccCCCCCCCcEEECCCCcCC
Q psy16110        662 --ETCFFNSSQLQIINLSFNRLE  682 (719)
Q Consensus       662 --~~~~~~l~~L~~L~Ls~N~l~  682 (719)
                        ...+...++|++|+|++|.++
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCcCEEeccCCCCC
Confidence              122334456666666666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.35  E-value=1.1e-07  Score=89.41  Aligned_cols=116  Identities=9%  Similarity=0.020  Sum_probs=88.5

Q ss_pred             cCcccCCCCccEEEcCCC-CCCCc----ChhhhcCCCCCCEEECCCCCCcccC----cccCCCCCCCCEEeCCCCcCCCC
Q psy16110        590 PSSFTIHSKLKTLKLAFN-KFNYF----PKELILGLSYLQEIDLSNNQLKTID----DYDYGYLPRLRKLNLNNNNIDAI  660 (719)
Q Consensus       590 ~~~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~  660 (719)
                      ...+...++|++|+|++| .+...    -...+...++|++|+|++|.+....    ...+...+.|++|+|++|+|...
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345667788889999888 77752    2344677899999999999998532    22345568999999999999874


Q ss_pred             ----CcccCCCCCCCcEEEC--CCCcCCCcC----hHhhcCcccc-EEecCCCcee
Q psy16110        661 ----SETCFFNSSQLQIINL--SFNRLEKLP----ERLFNTFLYT-NYDMAPNLVF  705 (719)
Q Consensus       661 ----~~~~~~~l~~L~~L~L--s~N~l~~i~----~~~~~~l~~L-~L~l~~N~l~  705 (719)
                          ....+...++|++|+|  ++|.++.-.    ...+...+.| +|+|++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence                2345677889999999  889998532    2345667899 9999999884

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.04  E-value=1.1e-06  Score=80.56  Aligned_cols=34  Identities=9%  Similarity=0.072  Sum_probs=17.8

Q ss_pred             CCCEEeCCCCc-CCCCCcccCCCCCCCcEEECCCC
Q psy16110        646 RLRKLNLNNNN-IDAISETCFFNSSQLQIINLSFN  679 (719)
Q Consensus       646 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N  679 (719)
                      +|++|+|++|. +++..-..+..+++|++|+|++|
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            45555555553 44433333445566666666665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.01  E-value=7e-06  Score=71.78  Aligned_cols=59  Identities=19%  Similarity=0.380  Sum_probs=49.5

Q ss_pred             CEEeCCCCcCC--CCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCCccccC
Q psy16110        648 RKLNLNNNNID--AISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHRCECA  717 (719)
Q Consensus       648 ~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~  717 (719)
                      ..++.++++++  .++.. +  .++|++|+|++|+|+.++...|..++.| .|+|++||+        .|+|+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~--------~CdC~   72 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA-F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW--------RCDCR   72 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC-C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC--------BCSGG
T ss_pred             CEEEeCCCCCccccCCCC-C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe--------eccCc
Confidence            37888888887  66643 3  2579999999999999999999999999 999999999        89996

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.99  E-value=5.4e-07  Score=89.08  Aligned_cols=80  Identities=26%  Similarity=0.284  Sum_probs=47.5

Q ss_pred             cCCCCCCEEECCCCCCcccCc--ccCCCCCCCCEEeCCCCcCCCCCc-ccCCCCCCCcEEECCCCcCCC-cC------hH
Q psy16110        618 LGLSYLQEIDLSNNQLKTIDD--YDYGYLPRLRKLNLNNNNIDAISE-TCFFNSSQLQIINLSFNRLEK-LP------ER  687 (719)
Q Consensus       618 ~~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~-i~------~~  687 (719)
                      .++++|++|+|++|+++++..  ..+..+++|+.|+|++|+|+++.. ..+..+ +|++|+|++|++.. +|      ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            345677777777777766442  234466777777777777776521 223333 77777777777753 33      23


Q ss_pred             hhcCcccc-EEe
Q psy16110        688 LFNTFLYT-NYD  698 (719)
Q Consensus       688 ~~~~l~~L-~L~  698 (719)
                      ++..+++| .||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            45566666 654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.93  E-value=1.6e-06  Score=79.43  Aligned_cols=87  Identities=8%  Similarity=0.039  Sum_probs=62.0

Q ss_pred             CCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCC-CCCcChhhhcCC----CCCCEEECCCCC-CcccCcccCCCCCC
Q psy16110        573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNK-FNYFPKELILGL----SYLQEIDLSNNQ-LKTIDDYDYGYLPR  646 (719)
Q Consensus       573 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~l~~l~~  646 (719)
                      ..|++||+++|.++...-..+..+++|++|+|++|. ++...-..+..+    ++|++|+|++|. +++..-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            458888888888777666667788888888888884 665444445543    468888888874 77544345667888


Q ss_pred             CCEEeCCCCc-CCC
Q psy16110        647 LRKLNLNNNN-IDA  659 (719)
Q Consensus       647 L~~L~Ls~N~-l~~  659 (719)
                      |++|++++|. ++.
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            8888888875 443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.89  E-value=9e-06  Score=80.32  Aligned_cols=62  Identities=35%  Similarity=0.374  Sum_probs=30.5

Q ss_pred             CCCcEEECcCCCCCCc--CcCcccCCCCccEEEcCCCCCCCcCh-hhhcCCCCCCEEECCCCCCcc
Q psy16110        573 SSLEELNLNNNELTYL--FPSSFTIHSKLKTLKLAFNKFNYFPK-ELILGLSYLQEIDLSNNQLKT  635 (719)
Q Consensus       573 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~  635 (719)
                      +.|++|+|++|.++++  ++..+..+++|+.|+|++|+++++.. ..+..+ +|++|+|++|.+.+
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence            4555555555555543  22334455555555555555555411 112222 55666666665553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.52  E-value=0.00012  Score=63.89  Aligned_cols=66  Identities=26%  Similarity=0.484  Sum_probs=45.2

Q ss_pred             CCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCccc
Q psy16110        104 FPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKL  183 (719)
Q Consensus       104 ~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~  183 (719)
                      ||..|+|.     ...|+|.+.+++..   .+|.+                   +.    .++++|+|++|+|+.|+..+
T Consensus         2 CP~~C~C~-----~~~v~Cs~~~L~~~---~vP~~-------------------lp----~~l~~L~Ls~N~l~~l~~~~   50 (130)
T 3rfe_A            2 CPAPCSCA-----GTLVDCGRRGLTWA---SLPTA-------------------FP----VDTTELVLTGNNLTALPPGL   50 (130)
T ss_dssp             CCTTCEEE-----TTEEECCSSCCCTT---TSCSC-------------------CC----TTCSEEECTTSCCSSCCTTT
T ss_pred             cCCCCEEc-----CCEEEeCCCCCccc---cCCCC-------------------CC----cCCCEEECCCCcCCccChhh
Confidence            56689997     35899988665311   23322                   21    25899999999999999888


Q ss_pred             ccchhccccEEEcCCCcC
Q psy16110        184 FSPHRDTLQELRLADNLF  201 (719)
Q Consensus       184 f~~~~~~L~~L~Ls~n~i  201 (719)
                      |. .+++|++|+|++|.+
T Consensus        51 f~-~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           51 LD-ALPALRTAHLGANPW   67 (130)
T ss_dssp             GG-GCTTCCEEECCSSCC
T ss_pred             hh-hccccCEEEecCCCe
Confidence            75 446677777766654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.47  E-value=0.00011  Score=68.47  Aligned_cols=83  Identities=17%  Similarity=0.133  Sum_probs=40.1

Q ss_pred             CCCcEEECcCC-CCCCc----CcCcccCCCCccEEEcCCCCCCCcC----hhhhcCCCCCCEEECCCCCCcccC----cc
Q psy16110        573 SSLEELNLNNN-ELTYL----FPSSFTIHSKLKTLKLAFNKFNYFP----KELILGLSYLQEIDLSNNQLKTID----DY  639 (719)
Q Consensus       573 ~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~----~~  639 (719)
                      +.|++|+|++| ++...    +..++...+.|++|+|++|++....    .+++..-+.|++|+|++|.|+...    ..
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            55666666653 55432    2233444555666666666555322    222334455666666666555321    12


Q ss_pred             cCCCCCCCCEEeCCCC
Q psy16110        640 DYGYLPRLRKLNLNNN  655 (719)
Q Consensus       640 ~l~~l~~L~~L~Ls~N  655 (719)
                      .+..-+.|++|+|++|
T Consensus       121 aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHhhCCceeEEECCCC
Confidence            2333444555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.30  E-value=5.8e-05  Score=70.41  Aligned_cols=39  Identities=13%  Similarity=0.009  Sum_probs=17.2

Q ss_pred             ccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCC
Q psy16110        314 AKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYN  353 (719)
Q Consensus       314 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n  353 (719)
                      +.|++|+|++|.|+.....++.. ++..-+.|++|+|+++
T Consensus        98 ~tL~~L~L~~N~Ig~~Ga~ala~-aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           98 PSLRVLNVESNFLTPELLARLLR-STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHH-HTTTTCCCSEEECCCC
T ss_pred             CccCeEecCCCcCCHHHHHHHHH-HHhhCCceeEEECCCC
Confidence            44555555555544433322222 2333444555555543

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=89.10  E-value=0.84  Score=37.01  Aligned_cols=44  Identities=16%  Similarity=0.286  Sum_probs=20.2

Q ss_pred             CcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcC
Q psy16110        230 IKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMA  274 (719)
Q Consensus       230 l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls  274 (719)
                      ++.|...+|.+|.+|+.+.+..+ ++.|...+|.++.+|+.+.+.
T Consensus         8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~   51 (100)
T 2lz0_A            8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT   51 (100)
T ss_dssp             CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred             cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence            34444444444555554444432 444444444444444444443

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=86.30  E-value=1.4  Score=35.62  Aligned_cols=48  Identities=19%  Similarity=0.259  Sum_probs=29.7

Q ss_pred             CCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCC
Q psy16110        433 NNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAAT  482 (719)
Q Consensus       433 n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n  482 (719)
                      ..++.+...+|.+|.+|+.+.|..+  ++.+...+|.+|.+|+.+.+...
T Consensus         6 ~~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            6 EPVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCC
Confidence            3455566666666666666666653  56666666666666666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	719
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-23
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-21
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-09
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-07
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-04

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.3 bits (246), Expect = 2e-23
 Identities = 65/269 (24%), Positives = 119/269 (44%), Gaps = 21/269 (7%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
              LDL +N + E++   F N+  L  L L  N  +S +  G F PL KLE L L+   L
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQL 91

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRV--GSLYG 542
           K +P+        L+ L +  N +T++ + +F  L  +  ++L  N + +  +  G+  G
Sbjct: 92  KELPEKMPK---TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL 602
           +  +  + ++   +TT               SL EL+L+ N++T +  +S    + L  L
Sbjct: 149 MKKLSYIRIADTNITTIPQGLP--------PSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 603 KLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISE 662
            L+FN  +      +    +L+E+ L+NN+L             ++ + L+NNNI AI  
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 259

Query: 663 TCFF------NSSQLQIINLSFNRLEKLP 685
             F         +    ++L  N ++   
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQYWE 288

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.0 bits (227), Expect = 5e-21
 Identities = 63/265 (23%), Positives = 104/265 (39%), Gaps = 14/265 (5%)

Query: 425 LTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGL 484
           L  +  S   L+++      +      L+L  N  ++ +  G F  LK L  L L    +
Sbjct: 12  LRVVQCSDLGLEKVPKDLPPD---TALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKI 67

Query: 485 KSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
             I    F  L+ L+ L L+ N L E+PE M K    L  L +  N I  +R     GL 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPK---TLQELRVHENEITKVRKSVFNGLN 124

Query: 545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKL 604
            M  ++L  N L +         +      L  + + +  +T +          L  L L
Sbjct: 125 QMIVVELGTNPLKSSG---IENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHL 178

Query: 605 AFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETC 664
             NK        + GL+ L ++ LS N +  +D+      P LR+L+LNNN +       
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 237

Query: 665 FFNSSQLQIINLSFNRLEKLPERLF 689
             +   +Q++ L  N +  +    F
Sbjct: 238 LADHKYIQVVYLHNNNISAIGSNDF 262

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.6 bits (213), Expect = 3e-19
 Identities = 62/317 (19%), Positives = 116/317 (36%), Gaps = 30/317 (9%)

Query: 243 NLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRL 302
           +L  ++        +P    + P    +L +  N+I  +K   F + + L  +IL  N++
Sbjct: 11  HLRVVQCSDLGLEKVPK---DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 303 TTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDT 362
           + I  GAF  L K+  L L  N+L +L     +         +  L +  N + K+    
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPK--------TLQELRVHENEITKVRKSV 119

Query: 363 FQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNY 422
           F G +  I           S   NG F            L  + + D  ITT+       
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGM-------KKLSYIRIADTNITTIPQGLP-- 170

Query: 423 KLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAAT 482
             LT+L L  N + +++  +   +  L  L LS    +S++  G       L  L L   
Sbjct: 171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS-FNSISAVDNGSLANTPHLRELHLNNN 229

Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK------NLLNLTYLDLSNNNIVNLR 536
            L  +P    D    ++ + L +N+++ I    F          + + + L +N +    
Sbjct: 230 KLVKVPGGLAD-HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288

Query: 537 V--GSLYGLPSMKRLDL 551
           +   +   +     + L
Sbjct: 289 IQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.0 bits (188), Expect = 6e-16
 Identities = 57/300 (19%), Positives = 108/300 (36%), Gaps = 64/300 (21%)

Query: 396 TGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
             L      L++++N+IT +      N K L  L L +N + ++ P AF  +  L  L L
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 455 SRNA--------------------HLSSLPVGGFDPLKKLEVLDLAATGLKSIPQY--QF 492
           S+N                      ++ +    F+ L ++ V++L    LKS       F
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 493 DELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS 552
             +  L Y+ +A  ++T IP+ +  +L   T L L  N I  +   SL GL ++ +L LS
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 553 FNKLTTFKGD------------------YFNTKSKPNTSSLEELNLNNNELTYLFPSSFT 594
           FN ++                               +   ++ + L+NN ++ +  + F 
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF- 262

Query: 595 IHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKT--IDDYDYGYLPRLRKLNL 652
                             P       +    + L +N ++   I    +  +     + L
Sbjct: 263 -----------------CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.8 bits (185), Expect = 1e-15
 Identities = 51/280 (18%), Positives = 106/280 (37%), Gaps = 25/280 (8%)

Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
           +  +LDL +N+I  I++G  K   NL  L + +N+ + I   +      L  L ++ N++
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
             L      + + L       N +T +    FNGL ++ ++ LG N L        + GA
Sbjct: 92  KELPEKMPKTLQELRV---HENEITKVRKSVFNGLNQMIVVELGTNPLKSSG---IENGA 145

Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQG----------THITIFSFFQDFQKLKSLDLNGN 388
           F G+ K+  + +    +  +                       +  +    L  L L+ N
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 389 FL--INLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAF--- 443
            +  ++  S      L  L++ +N++  +     ++K +  + L +NN+  +    F   
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 444 ---TNVPTLLHLNLSRNA-HLSSLPVGGFDPLKKLEVLDL 479
              T   +   ++L  N      +    F  +     + L
Sbjct: 266 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.6 bits (161), Expect = 2e-12
 Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 16/214 (7%)

Query: 505 HNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYF 564
              L ++P+ +  +      LDL NN I  ++ G    L ++  L L  NK++      F
Sbjct: 19  DLGLEKVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75

Query: 565 NTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ 624
                     LE L L+ N+L  L         +L+      N+     K +  GL+ + 
Sbjct: 76  A-----PLVKLERLYLSKNQLKELPEKMPKTLQELRVH---ENEITKVRKSVFNGLNQMI 127

Query: 625 EIDLSNNQLKTIDDYD--YGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682
            ++L  N LK+    +  +  + +L  + + + NI  I +        L  ++L  N++ 
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKIT 184

Query: 683 KLPERLFNTFLYTNYDMAPNLVFQSHLSGHRCEC 716
           K+                      +  +G     
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 218

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.4 bits (210), Expect = 2e-18
 Identities = 75/388 (19%), Positives = 139/388 (35%), Gaps = 29/388 (7%)

Query: 196 LADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFT 255
           +   L   ++    S ++   L  +  L      IK+I+   ++  +NL ++   +N+ T
Sbjct: 25  MKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLT 79

Query: 256 SIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAK 315
            I    L     L  + M  N+I  +   + L+      +               N    
Sbjct: 80  DITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 316 IHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQ 375
               N   +        + Q  +F               L  L         ++  S   
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLK---PLANLTTLERLDISSNKVSDISVLA 194

Query: 376 DFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNL 435
               L+SL    N + ++   G+   LD L++  NQ+  + + A +   LT LDL++N +
Sbjct: 195 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA-SLTNLTDLDLANNQI 253

Query: 436 KELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDEL 495
             L P   + +  L  L L  N   +  P+ G   L  LE+        +         L
Sbjct: 254 SNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLEL-----NENQLEDISPISNL 306

Query: 496 LNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
            NL YL L  N++++I      +L  L  L  +NN + ++   SL  L ++  L    N+
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQ 362

Query: 556 LTTFKGDYFNTKSKPNTSSLEELNLNNN 583
           ++             N + + +L LN+ 
Sbjct: 363 ISDL-------TPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.8 bits (198), Expect = 7e-17
 Identities = 74/366 (20%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 189 DTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELR 248
           D +  L+            I S      L NL  ++ S+NQ+  I    LK    L+++ 
Sbjct: 44  DQVTTLQADRL-------GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL 94

Query: 249 MDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGG 308
           M++N+   I            +  +          D   +   L R+ L  N ++ I   
Sbjct: 95  MNNNQIADIT----PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISAL 150

Query: 309 AFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHI 368
           +     +          L  L + T          K+  ++    +L  L S       I
Sbjct: 151 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQI 209

Query: 369 TIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKL 428
           +  +       L  L LNGN L ++ +      L +L++ +NQI+ L+  +     LT+L
Sbjct: 210 SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS-GLTKLTEL 268

Query: 429 DLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP 488
            L  N +  + P     +  L  L            +     LK L  L L    +  I 
Sbjct: 269 KLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 489 QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR 548
                 L  L+ L  A+N ++++      NL N+ +L   +N I +L    L  L  + +
Sbjct: 324 P--VSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLT--PLANLTRITQ 377

Query: 549 LDLSFN 554
           L L+  
Sbjct: 378 LGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.4 bits (171), Expect = 2e-13
 Identities = 70/388 (18%), Positives = 125/388 (32%), Gaps = 50/388 (12%)

Query: 268 LRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN 327
           +  L      I ++    +L+   L +I    N+LT I       L K+  + +  N++ 
Sbjct: 46  VTTLQADRLGIKSIDGVEYLNN--LTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA 101

Query: 328 KLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNG 387
            +                + +       N  N +  + +  TI              L+ 
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161

Query: 388 NFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVP 447
              +         T        +   +  S       L  L  ++N + ++ P       
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT-- 219

Query: 448 TLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNH 507
                                     L+ L L    LK I       L NL  L LA+N 
Sbjct: 220 -------------------------NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ 252

Query: 508 LTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTK 567
           ++ +       L  LT L L  N I N+    L GL ++  L+L+ N+L           
Sbjct: 253 ISNLAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDISPISNLKN 308

Query: 568 SKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEID 627
                  L  L L  N ++ + P   +  +KL+ L  A NK +      +  L+ +  + 
Sbjct: 309 -------LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSS--LANLTNINWLS 357

Query: 628 LSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
             +NQ+  +       L R+ +L LN+ 
Sbjct: 358 AGHNQISDLTPL--ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.3 bits (163), Expect = 2e-12
 Identities = 39/198 (19%), Positives = 77/198 (38%), Gaps = 19/198 (9%)

Query: 489 QYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR 548
                +L NL+ L   +N +++I  +      NL  L L+ N + ++  G+L  L ++  
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDI--GTLASLTNLTD 245

Query: 549 LDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNK 608
           LDL+ N+++               + L EL L  N+++ + P +         L     +
Sbjct: 246 LDLANNQISNLA-------PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE 298

Query: 609 FNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNS 668
                  L      L  + L  N +  I       L +L++L   NN +  +S     N 
Sbjct: 299 DISPISNLK----NLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKVSDVSS--LANL 350

Query: 669 SQLQIINLSFNRLEKLPE 686
           + +  ++   N++  L  
Sbjct: 351 TNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 6e-04
 Identities = 45/272 (16%), Positives = 84/272 (30%), Gaps = 17/272 (6%)

Query: 421 NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA 480
                 K  L   N+ +       ++  +  L   R   + S+   G + L  L  ++ +
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRL-GIKSID--GVEYLNNLTQINFS 74

Query: 481 ATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSL 540
              L  I       L  L  + + +N + +I  +     L    L  +    ++      
Sbjct: 75  NNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 541 YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLK 600
                    +   +             S  N  +  +   N   L  L  SS  +     
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 601 TLKLAFNKFNYFPKELILGL------SYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN 654
             KL   +        I  +      + L E+ L+ NQLK I       L  L  L+L N
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLAN 250

Query: 655 NNIDAISETCFFNSSQLQIINLSFNRLEKLPE 686
           N I  ++       ++L  + L  N++  +  
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISP 280

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (170), Expect = 9e-14
 Identities = 55/270 (20%), Positives = 87/270 (32%), Gaps = 12/270 (4%)

Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
                    L+ +             + L  N  +S +P   F   + L +L L +  L 
Sbjct: 14  VTTSCPQQGLQAVPVGIPAA---SQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLA 69

Query: 486 S-IPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLP 544
                      L  +     +  L  +    F  L  L  L L    +  L  G   GL 
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKL 604
           +++ L L  N L     D F      +  +L  L L+ N ++ +   +F     L  L L
Sbjct: 130 ALQYLYLQDNALQALPDDTFR-----DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 605 AFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETC 664
             N+  +        L  L  + L  N L  +       L  L+ L LN+N         
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244

Query: 665 FFNSSQLQIINLSFNRLE-KLPERLFNTFL 693
               + LQ    S + +   LP+RL    L
Sbjct: 245 PL-WAWLQKFRGSSSEVPCSLPQRLAGRDL 273

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 36/195 (18%), Positives = 63/195 (32%), Gaps = 7/195 (3%)

Query: 505 HNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYF 564
              L  +P  +         + L  N I ++   S     ++          +       
Sbjct: 20  QQGLQAVPVGIPAAS---QRIFLHGNRISHVPAASFRACRNLTI----LWLHSNVLARID 72

Query: 565 NTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQ 624
                      +    +N +L  + P++F    +L TL L           L  GL+ LQ
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 625 EIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKL 684
            + L +N L+ + D  +  L  L  L L+ N I ++ E  F     L  + L  NR+  +
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 685 PERLFNTFLYTNYDM 699
               F          
Sbjct: 193 HPHAFRDLGRLMTLY 207

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 4e-10
 Identities = 48/278 (17%), Positives = 91/278 (32%), Gaps = 26/278 (9%)

Query: 162 SDIP--IRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVN 219
             IP   +R+   GN +  +    F       + L +             +      L+ 
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFR----ACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 220 LRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIG 279
              L   + Q+++++     G   L  L +D      +      G  AL+ L +  N + 
Sbjct: 84  QLDLS-DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 280 TLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAF 339
            L  D+F     L  + L GNR++++   AF GL  +  L L  NR+  ++   F+    
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR---- 198

Query: 340 NGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGN-FLINLESTGL 398
                                                 + L+ L LN N ++ +  +  L
Sbjct: 199 ------------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL 246

Query: 399 EDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLK 436
              L       +++       L  + L    L+ N+L+
Sbjct: 247 WAWLQKFRGSSSEVPCSLPQRLAGRDL--KRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 54/257 (21%), Positives = 101/257 (39%), Gaps = 13/257 (5%)

Query: 380 LKSLDLNGNFLINLESTGLED----TLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNL 435
            + + L+GN + ++ +         T+  L+         ++      L       +  L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 436 KELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDEL 495
           + ++P  F  +  L  L+L R      L  G F  L  L+ L L    L+++P   F +L
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 496 LNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNK 555
            NL +L L  N ++ +PE  F+ L +L  L L  N + ++   +   L  +  L L  N 
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 556 LTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFN-YFPK 614
           L+    +           +L+ L LN+N        +  + + L+  + + ++     P+
Sbjct: 213 LSALPTEALA-----PLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 615 ELI-LGLSYLQEIDLSN 630
            L    L  L   DL  
Sbjct: 267 RLAGRDLKRLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (154), Expect = 9e-12
 Identities = 43/218 (19%), Positives = 72/218 (33%), Gaps = 12/218 (5%)

Query: 464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLT 523
           P+     +     ++     L ++P    D   +   L L+ N L             LT
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 524 YLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
            L+L    +          L     L +      +               +L  L+++ N
Sbjct: 59  QLNLDRAEL--------TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110

Query: 584 ELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGY 643
            LT L   +     +L+ L L  N+    P  L+     L+++ L+NN L  +       
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170

Query: 644 LPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRL 681
           L  L  L L  N++  I +  FF S  L    L  N  
Sbjct: 171 LENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 6e-09
 Identities = 48/199 (24%), Positives = 63/199 (31%), Gaps = 28/199 (14%)

Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLP 464
           +N     +T L       K  T L LS N L             L  LNL R        
Sbjct: 15  VNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72

Query: 465 VGGFDPLKKLEVLDLAAT--------------------GLKSIPQYQFDELLNLKYLCLA 504
            G    L  L++                           L S+P      L  L+ L L 
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 505 HNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYF 564
            N L  +P  +      L  L L+NNN+  L  G L GL ++  L L  N L T    +F
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

Query: 565 NTKSKPNTSSLEELNLNNN 583
            +        L    L+ N
Sbjct: 193 GSH------LLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 11/203 (5%)

Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMK 547
           P  +  ++ +   +     +LT +P  + K+    T L LS N +    + +L     + 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLT 58

Query: 548 RLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFN 607
           +L+L   +LT  + D           S  +L         L   +    S  +   L   
Sbjct: 59  QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 608 KFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFN 667
                          LQE+ L  N+LKT+        P+L KL+L NNN+  +       
Sbjct: 119 ALRGLG--------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170

Query: 668 SSQLQIINLSFNRLEKLPERLFN 690
              L  + L  N L  +P+  F 
Sbjct: 171 LENLDTLLLQENSLYTIPKGFFG 193

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 32/202 (15%), Positives = 62/202 (30%), Gaps = 10/202 (4%)

Query: 241 CDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGN 300
             + LE+  D    T++P    + P+   IL ++ N + T    + +    L ++ L   
Sbjct: 9   VASHLEVNCDKRNLTALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 301 RLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNS 360
            LT ++      +     L+    +   L   T        ++   + +L    L  L  
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 361 DTFQGTHITIFSFFQD-------FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQIT 413
                                    +  SL  N    +        + LD L +++N + 
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 414 TLSSSALNYKLLTKLDLSHNNL 435
           T+        LL    L  N  
Sbjct: 186 TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 3/78 (3%)

Query: 620 LSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFN 679
           ++   E++     L  +             L+L+ N +   S       ++L  +NL   
Sbjct: 9   VASHLEVNCDKRNLTALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 680 RLEKLPERLFNTFLYTNY 697
            L KL        L T  
Sbjct: 66  ELTKLQVDGTLPVLGTLD 83

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 58.7 bits (140), Expect = 1e-09
 Identities = 48/318 (15%), Positives = 87/318 (27%), Gaps = 18/318 (5%)

Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
               L+L++  + ++ E       +L  L    N  T +P +    P++L+ L +  N +
Sbjct: 39  QAHELELNNLGLSSLPELP----PHLESLVASCNSLTELPEL----PQSLKSLLVDNNNL 90

Query: 279 GTLKA-DSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGG 337
             L      L    +    L                   + L    +    L        
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 338 AFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTG 397
               L ++  L          NS                   +         L  L +  
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
            ++ L              +   NY              ++    F+ +  L       N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK 517
              S+      D    LE L+++   L  +P         L+ L  + NHL E+PE+   
Sbjct: 271 -ASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL--- 322

Query: 518 NLLNLTYLDLSNNNIVNL 535
              NL  L +  N +   
Sbjct: 323 -PQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.1 bits (128), Expect = 3e-08
 Identities = 53/313 (16%), Positives = 107/313 (34%), Gaps = 15/313 (4%)

Query: 379 KLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKEL 438
           +   L+LN   L +L    L   L++L    N +T L     + K L   + +   L +L
Sbjct: 39  QAHELELNNLGLSSLPE--LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 96

Query: 439 EPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATG-----LKSIPQYQFD 493
            P       +   L        SS           L+ L             +    +  
Sbjct: 97  PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 156

Query: 494 ELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSF 553
           EL NL +L   +     + ++    L   + +  +N       + +L  L ++   +   
Sbjct: 157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 216

Query: 554 NKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFP 613
             L            + N  +       +     +  + F+  S+L       N  +   
Sbjct: 217 KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276

Query: 614 KELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQI 673
           + L      L+E+++SNN+L  +        PRL +L  + N++  + E        L+ 
Sbjct: 277 RSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPELP----QNLKQ 328

Query: 674 INLSFNRLEKLPE 686
           +++ +N L + P+
Sbjct: 329 LHVEYNPLREFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 12/82 (14%)

Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
            SLEELN++NN+L  L P+      +L+ L  +FN     P+        L+++ +  N 
Sbjct: 284 PSLEELNVSNNKLIEL-PALP---PRLERLIASFNHLAEVPEL----PQNLKQLHVEYNP 335

Query: 633 LKTIDDYDYGYLPRLRKLNLNN 654
           L+   D        +  L +N+
Sbjct: 336 LREFPD----IPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 17/103 (16%)

Query: 502 CLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKG 561
               N  +     +     +L  L++SNN ++ L        P ++RL  SFN L     
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEV-- 319

Query: 562 DYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKL 604
                       +L++L++  N L    P        ++ L++
Sbjct: 320 -------PELPQNLKQLHVEYNPLREF-PDIP---ESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 5e-07
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 430 LSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQ 489
              N       +     P+L  LN+S N  L  LP        +LE L  +   L  +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPAL----PPRLERLIASFNHLAEVP- 320

Query: 490 YQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529
              +   NLK L + +N L E P++      ++  L +++
Sbjct: 321 ---ELPQNLKQLHVEYNPLREFPDI----PESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 48/301 (15%), Positives = 89/301 (29%), Gaps = 19/301 (6%)

Query: 398 LEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
           L+     L + +  +++L     +   L  L  S N+L EL P    +   L  L +  N
Sbjct: 36  LDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLTEL-PELPQS---LKSLLVDNN 88

Query: 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK 517
              +   +        +    L          +     ++   L    +    +  +   
Sbjct: 89  NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 518 NLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEE 577
           N       +L N   +         L  +  L LS   +              N   L  
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 578 LNLNNNELTYLFPSSFTIHSKLKTLKLAFNKF--------NYFPKELILGLSYLQEIDLS 629
           +  +NN L  L     ++ +         +              + +  GLS L      
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268

Query: 630 NNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLF 689
            N             P L +LN++NN +  +         +L+ +  SFN L ++PE   
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP----PRLERLIASFNHLAEVPELPQ 324

Query: 690 N 690
           N
Sbjct: 325 N 325

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 9e-05
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 8/68 (11%)

Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSM 273
                +L  L++S+N++  +          L  L    N    +P +    P+ L+ L +
Sbjct: 280 CDLPPSLEELNVSNNKLIELPALP----PRLERLIASFNHLAEVPEL----PQNLKQLHV 331

Query: 274 AYNRIGTL 281
            YN +   
Sbjct: 332 EYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 12/79 (15%)

Query: 401 TLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHL 460
           +L+ LNV +N++  L +       L +L  S N+L E+          L  L++  N  L
Sbjct: 285 SLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPEL----PQNLKQLHVEYN-PL 336

Query: 461 SSLPVGGFDPLKKLEVLDL 479
              P    D  + +E L +
Sbjct: 337 REFP----DIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 8e-04
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

Query: 623 LQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE 682
             E++L+N  L ++ +      P L  L  + N++  + E        L+ + +  N L+
Sbjct: 40  AHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPELP----QSLKSLLVDNNNLK 91

Query: 683 KLPERLFNTFLYTNYDMAPNLVFQSHLSGHRCEC 716
            L +           +     + +   S      
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKII 125

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRM 249
           +L+EL +++N                    L  L  S N +  + E       NL +L +
Sbjct: 285 SLEELNVSNNKL---------IELPALPPRLERLIASFNHLAEVPELP----QNLKQLHV 331

Query: 250 DHNRFTSIPSV 260
           ++N     P +
Sbjct: 332 EYNPLREFPDI 342

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (134), Expect = 2e-09
 Identities = 29/230 (12%), Positives = 65/230 (28%), Gaps = 5/230 (2%)

Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
                  + + E+      N    + L       L  +  G F     LE ++++   + 
Sbjct: 11  RVFLCQESKVTEIPSDLPRN---AIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVL 66

Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
            + +      L   +          +  +  +   NL  L     +   ++         
Sbjct: 67  EVIEADVFSNLPKLHEIRIEKA-NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLA 605
             +  L   +                +     L LN N +  +   +F      +     
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 606 FNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN 655
            N     P ++  G S    +D+S  ++ ++  Y    L +LR  +  N 
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 3e-07
 Identities = 38/233 (16%), Positives = 69/233 (29%), Gaps = 28/233 (12%)

Query: 476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV-- 533
           V     + +  IP    D   N   L      L  I +  F    +L  +++S N+++  
Sbjct: 12  VFLCQESKVTEIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 534 ---------------------NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNT 572
                                NL   +     ++  L       T  K      K     
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 573 SSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQ 632
             L ++  N N  T    S   +  +   L L  N           G    +     NN 
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188

Query: 633 LKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLP 685
           L+ + +  +        L+++   I ++      N  +L+  +     L+KLP
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 27/208 (12%), Positives = 63/208 (30%), Gaps = 26/208 (12%)

Query: 505 HNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYF 564
            + +TEIP  + +N      L      +  ++ G+  G   ++++++S N +        
Sbjct: 17  ESKVTEIPSDLPRNA---IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 73

Query: 565 NTKSKPNTSSLEELNLNNNELTYLFPSSFTI-----------------------HSKLKT 601
            +          E   N   +      +                             L  
Sbjct: 74  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 133

Query: 602 LKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAIS 661
           ++   N         +        + L+ N ++ I +  +           +NNN++ + 
Sbjct: 134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP 193

Query: 662 ETCFFNSSQLQIINLSFNRLEKLPERLF 689
              F  +S   I+++S  R+  LP    
Sbjct: 194 NDVFHGASGPVILDISRTRIHSLPSYGL 221

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 7e-05
 Identities = 33/247 (13%), Positives = 69/247 (27%), Gaps = 17/247 (6%)

Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
           + R+    ++++  I   + +   N +ELR    +   I   + +G   L  + ++ N +
Sbjct: 9   SNRVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGA 338
                        +E  +                           N  N         G 
Sbjct: 66  ----------LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI 115

Query: 339 FNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGL 398
            +      I +L    L+  ++          F        +  L+ NG   I+  +   
Sbjct: 116 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNG 175

Query: 399 EDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN 457
               +     +N +  L +           LD+S   +  L      N+  L   +    
Sbjct: 176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY-- 233

Query: 458 AHLSSLP 464
            +L  LP
Sbjct: 234 -NLKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSV 260
           FHG     ILD+S  +I ++    L+    L            +P++
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLKKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 34/223 (15%), Positives = 75/223 (33%), Gaps = 12/223 (5%)

Query: 292 LERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG 351
              +     +L  I+ GAF+G   +  + +  N + ++                ++  L 
Sbjct: 31  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF---------SNLPKLH 81

Query: 352 YNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQ 411
             R+ K N+  +             +  + +  +     ++   +  +  LD  +  +  
Sbjct: 82  EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH 141

Query: 412 ITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPL 471
               +S          L L+ N ++E+   AF             N     LP   F   
Sbjct: 142 TIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL-EELPNDVFHGA 200

Query: 472 KKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM 514
               +LD++ T + S+P Y  + L  L+       +L ++P +
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 28/236 (11%), Positives = 67/236 (28%), Gaps = 13/236 (5%)

Query: 295 IILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNR 354
            + + +++T I         +   L     +L  +       GAF+G   +  + +  N 
Sbjct: 13  FLCQESKVTEIPSDLPRNAIE---LRFVLTKLRVIQK-----GAFSGFGDLEKIEISQND 64

Query: 355 LNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITT 414
           + ++           +     +            F        L  +   +    +    
Sbjct: 65  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 124

Query: 415 LSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL 474
            S   +   +   +++           +F +V   L+ N  +  H        F+  +  
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH-----NCAFNGTQLD 179

Query: 475 EVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
           E+       L+ +P   F        L ++   +  +P    +NL  L      N 
Sbjct: 180 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 6e-07
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 9/161 (5%)

Query: 429 DLSHNNLKELEPTAFTNV-PTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI 487
           +L    +++L+         +   L+L        L            VL+  ++   ++
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLV-----AQNIDVVLNRRSSMAATL 57

Query: 488 PQYQFDELLNLKYLCLAHNHLTEIPE--MMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
                + +  L  L L++N L  + +   + +   NL  L+LS N + + R         
Sbjct: 58  RII-EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 116

Query: 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT 586
           ++ L L  N L+    D     S       + L L+ +EL 
Sbjct: 117 LEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELP 157

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 7/119 (5%)

Query: 574 SLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQL 633
           S + L+L                +    L    +      + +   +  L  ++LSNN+L
Sbjct: 23  SQQALDLKGLR----SDPDLVAQNIDVVLNR-RSSMAATLRIIEENIPELLSLNLSNNRL 77

Query: 634 KTIDDYDY--GYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFN 690
             +DD        P L+ LNL+ N + +  E       +L+ + L  N L         
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 1e-06
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 520 LNLTYLDLSNNNIVNLRVGSLY-GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEEL 578
           L++  LD+    + + R   L   L   + + L    LT  +     + +     +L EL
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI-SSALRVNPALAEL 60

Query: 579 NLNNNELT-----YLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615
           NL +NEL       +     T   K++ L L           
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 1e-06
 Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 496 LNLKYLCLAHNHLTEIPEM-MFKNLLNLTYLDLSNNNIVNLRVGS----LYGLPSMKRLD 550
           L+++ L +    L++     +   L     + L +  +   R       L   P++  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 551 LSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNN 583
           L  N+L            +  +  +++L+L N 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 7e-06
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 510 EIPEMMFKNLLNLTYLDLSNNNIVNLRVGS----LYGLPSMKRLDLSFNKLTTFKGDYFN 565
           E+ + + +    L  L L++ ++ +    S    L    S++ LDLS N L         
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 566 TKSKPNTSSLEELNLNNNELTYLFPSSFT 594
              +     LE+L L +   +        
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 8e-04
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 599 LKTLKLAFNKFNYFP-KELILGLSYLQEIDLSNNQLKTIDDYDYG----YLPRLRKLNLN 653
           +++L +   + +     EL+  L   Q + L +  L      D        P L +LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 654 NNNID-----AISETCFFNSSQLQIINLS 677
           +N +       + +     S ++Q ++L 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 538 GSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELT-----YLFPSS 592
           G       ++ L L+   ++          +     SL EL+L+NN L       L  S 
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSL-AATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 593 FTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTI 636
                 L+ L L    ++   ++       LQ ++     L+ I
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDR------LQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 20/115 (17%)

Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEM----MFKNLLNLTYLDLSNNNIVNLRVG 538
           G++ + Q        L+ L LA   +++              +L  LDLSNN + +  + 
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 539 SL-----YGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYL 588
            L          +++L L                S+     L+ L  +   L  +
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYW-----------SEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 13/89 (14%)

Query: 380 LKSLDLNGNFLINLESTGLEDTLDN---LNVRDNQITTLSSSAL-----NYKLLTKLDLS 431
           ++SLD+    L +     L   L     + + D  +T      +         L +L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 432 HNNL-----KELEPTAFTNVPTLLHLNLS 455
            N L       +     T    +  L+L 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 6/96 (6%)

Query: 164 IPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRIL 223
           + I+ LD     L         P     Q +RL D    ++     S++       L  L
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAEL 60

Query: 224 DLSDNQI-----KAIEEGILKGCDNLLELRMDHNRF 254
           +L  N++       + +G+      + +L + +   
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.003
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 10/92 (10%)

Query: 190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQI-----KAIEEGILKGCDNL 244
            L+ L LAD    DS     + +      +LR LDLS+N +       + E + +    L
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAAT-LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 245 LELRMDHNRFTSIPSVSLNGPRA----LRILS 272
            +L +    ++      L         LR++S
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 621 SYLQEIDLSNNQLKTIDDYDYG----YLPRLRKLNLNNNNID-----AISETCFFNSSQL 671
           S L+ + L++  +                 LR+L+L+NN +       + E+       L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 672 QIINLSFNRLEKLPERLFNTFLYTN 696
           + + L      +  E          
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.004
 Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 623 LQEIDLSNNQLKTIDDYDY-GYLPRLRKLNLNNNNIDAISET----CFFNSSQLQIINLS 677
           +Q +D+   +L      +    L + + + L++  +              +  L  +NL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 678 FNRL 681
            N L
Sbjct: 64  SNEL 67

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 34/216 (15%), Positives = 64/216 (29%), Gaps = 17/216 (7%)

Query: 471 LKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNN 530
           L     +    + +         +L  +  L      +T I     + L NL  L+L +N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN 73

Query: 531 NI---------VNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLN 581
            I           +    L G P      ++  +            +     +       
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 582 NNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDY 641
                    +   +        L+           +  LS L  +   +N++  I     
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL-- 191

Query: 642 GYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLS 677
             LP L +++L NN I  +S     N+S L I+ L+
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 34/212 (16%), Positives = 64/212 (30%), Gaps = 18/212 (8%)

Query: 355 LNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITT 414
           L          +++T      D   + +L   G  +  +E     + L  L ++DNQIT 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD 77

Query: 415 LSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKL 474
           L+      K+       +            ++ TL   +           +     L   
Sbjct: 78  LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137

Query: 475 EVLDLAATGLKSIPQYQ--------------FDELLNLKYLCLAHNHLTEIPEMMFKNLL 520
                  + L  +   Q                 L  L  L    N +++I      +L 
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLP 195

Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS 552
           NL  + L NN I ++    L    ++  + L+
Sbjct: 196 NLIEVHLKNNQISDV--SPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 39/219 (17%), Positives = 66/219 (30%), Gaps = 18/219 (8%)

Query: 445 NVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLA 504
            +   + +   ++    ++       L  +  L    TG+ +I   Q+  L NL  L L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIEGVQY--LNNLIGLELK 71

Query: 505 HNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR---------LDLSFNK 555
            N +T++  +     +    L  +    V+   G                   L    N 
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 556 LTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE 615
              +      T   P         L+         +     SKL TLK   NK +     
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 616 LILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN 654
            +  L  L E+ L NNQ+  +          L  + L N
Sbjct: 191 -LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 38/229 (16%), Positives = 71/229 (31%), Gaps = 25/229 (10%)

Query: 369 TIFSFFQD--FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLT 426
            I   F D        +    + + +  +    D +  L+     +TT+         L 
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQ-YLNNLI 66

Query: 427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKS 486
            L+L  N + +L P       T L L+ +   ++S++          L    +      +
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126

Query: 487 IPQYQFDELLNLKYLCLAHNHLTEIPEM-------------MFKNLLNLTYLDLSNNNIV 533
                    L+L  +                             NL  LT L   +N I 
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS 186

Query: 534 NLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNN 582
           ++    L  LP++  + L  N+++             NTS+L  + L N
Sbjct: 187 DIS--PLASLPNLIEVHLKNNQISDVSPL-------ANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 23/193 (11%), Positives = 52/193 (26%), Gaps = 6/193 (3%)

Query: 217 LVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYN 276
           L  +  L      +  IE   ++  +NL+ L +  N+ T +  +          LS    
Sbjct: 40  LDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97

Query: 277 RIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQG 336
           +  +  A     +          +            L          + L  L +  +  
Sbjct: 98  KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157

Query: 337 GAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLEST 396
                ++ +  L         L +       I+  S       L  + L  N + ++   
Sbjct: 158 IGNAQVSDLTPLANLSK----LTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPL 213

Query: 397 GLEDTLDNLNVRD 409
                L  + + +
Sbjct: 214 ANTSNLFIVTLTN 226

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 6/140 (4%)

Query: 491 QFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLD 550
           Q+   +  + L L    +  I  +    L     +D S+N I  L       L  +K L 
Sbjct: 13  QYTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLL 69

Query: 551 LSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLK-LAFNKF 609
           ++ N++                  L   +L    L  L P +         +        
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 610 NYFPKELILGLSYLQEIDLS 629
            ++   +I  +  ++ +D  
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 5e-05
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 591 SSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKL 650
           + +T   + + L L   K       L   L     ID S+N+++ +D   +  L RL+ L
Sbjct: 12  AQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTL 68

Query: 651 NLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYTNYDMAPNLVFQSHLS 710
            +NNN I  I E        L  + L+ N L +L +      L +   +       ++  
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 711 GHR 713
            +R
Sbjct: 129 HYR 131

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 19/148 (12%), Positives = 38/148 (25%), Gaps = 7/148 (4%)

Query: 385 LNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFT 444
           L    +              L++R  +I  + +          +D S N +++L+   F 
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FP 60

Query: 445 NVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLA 504
            +  L  L ++ N                L  L L    L  +        L        
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQAL-PDLTELILTNNSLVELGDLDPLASLKSLTYLCI 119

Query: 505 HNH----LTEIPEMMFKNLLNLTYLDLS 528
             +           +   +  +  LD  
Sbjct: 120 LRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 3/109 (2%)

Query: 204 SLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLN 263
           +   I   +++   V  R LDL   +I  I E +    D    +    N    +      
Sbjct: 4   TAELIEQAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFP-- 60

Query: 264 GPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNG 312
             R L+ L +  NRI  +      +   L  +IL  N L  +       
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA 109

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 499 KYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT 558
           + L LAH  LT +     + LL +T+LDLS+N +      +L  L  ++ L  S N L  
Sbjct: 1   RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN 57

Query: 559 FKGDYFNTKSKPNTSSLEELNLNNNELTYL-FPSSFTIHSKLKTLKLAFNKF 609
             G     + +       EL L NN L             +L  L L  N  
Sbjct: 58  VDGVANLPRLQ-------ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 221 RILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGT 280
           R+L L+   +  +    L+    +  L + HNR  ++P  +L   R L +L  + N +  
Sbjct: 1   RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 281 LKADSFLSQRWLERIILRGNRLTTIEG-GAFNGLAKIHILNLGYNRLNKL 329
           +  D   +   L+ ++L  NRL             ++ +LNL  N L + 
Sbjct: 58  V--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 204 SLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLN 263
           +   +        L+ +  LDLS N+++A+   +      L  L+   N   ++  V+  
Sbjct: 6   AHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVDGVANL 64

Query: 264 GPRALRILSMAYNRIGTLKADSFLSQ-RWLERIILRGNRLTTIEG 307
                + L +  NR+    A   L     L  + L+GN L   EG
Sbjct: 65  PRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 5/124 (4%)

Query: 381 KSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEP 440
           + L L    L  L        + +L++  N++  L  +    + L  L  S N L+ ++ 
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 441 TAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA---TGLKSIPQYQFDELLN 497
            A         L L  N    S  +       +L +L+L        + I +   + L +
Sbjct: 61  VANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 498 LKYL 501
           +  +
Sbjct: 119 VSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 578 LNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTID 637
           L+L + +LT L          +  L L+ N+    P  L   L  L+ +  S+N L+ +D
Sbjct: 3   LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALENVD 59

Query: 638 DYDYGYLPRLRKLNLNNNNIDAISE-TCFFNSSQLQIINLSFNRLEKLPE 686
                   +  +L L NN +   +      +  +L ++NL  N L +   
Sbjct: 60  GVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 47/261 (18%), Positives = 83/261 (31%), Gaps = 13/261 (4%)

Query: 425 LTKLDLSHNNLKELE--PTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAAT 482
           +  LDLS  NL +    P++  N+P L  L +    +L          L +L  L +  T
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 483 GLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIV-NLRVGSLY 541
            +         ++  L  L  ++N L+        +L NL  +    N I   +      
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 542 GLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKT 601
                  + +S N+LT      F   +             +  +     S      K   
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAF-------VDLSRNMLEGDASVLFGSDKNTQ 224

Query: 602 LKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNI-DAI 660
                     F    +     L  +DL NN++          L  L  LN++ NN+   I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 661 SETCFFNSSQLQIINLSFNRL 681
            +    N  +  +   + N+ 
Sbjct: 285 PQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 421 NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLA 480
             K L  LDL +N +    P   T +  L  LN+S N     +P GG   L++ +V   A
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG--NLQRFDVSAYA 299

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 43/185 (23%), Positives = 68/185 (36%), Gaps = 12/185 (6%)

Query: 426 TKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLK 485
           T +D +   LKE+      +      L L+ N        G F  L  L  L+L    L 
Sbjct: 11  TTVDCTGRGLKEIPRDIPLH---TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 486 SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPS 545
            I    F+   +++ L L  N + EI   MF  L  L  L+L +N I  +  GS   L S
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 546 MKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLA 605
           +  L+L+ N         +  +         + +LN        PS       ++   L 
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLR------KKSLNGGAARCGAPSKV---RDVQIKDLP 178

Query: 606 FNKFN 610
            ++F 
Sbjct: 179 HSEFK 183

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 43/262 (16%), Positives = 83/262 (31%), Gaps = 9/262 (3%)

Query: 424 LLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATG 483
           L   LDL+  NL    P     + +   +           P+       +++ +DL+ + 
Sbjct: 1   LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV 57

Query: 484 LK-SIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYG 542
           ++ S       +   L+ L L    L++          NL  L+LS  +  +        
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 543 LPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTL 602
               +  +L+ +    F   +        + ++ +LNL+            T+  +   L
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177

Query: 603 KLAFNKFNYFPKEL----ILGLSYLQEIDLSNNQLKTIDDYDY-GYLPRLRKLNLNNNNI 657
                  +   K         L+YLQ + LS       +     G +P L+ L +     
Sbjct: 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVP 237

Query: 658 DAISETCFFNSSQLQIINLSFN 679
           D   +        LQI    F 
Sbjct: 238 DGTLQLLKEALPHLQINCSHFT 259

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 5e-05
 Identities = 45/287 (15%), Positives = 83/287 (28%), Gaps = 21/287 (7%)

Query: 167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS 226
           + LD +G  L    D         +   R   +     L   FS         ++ +DLS
Sbjct: 3   QTLDLTGKNL--HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS------PFRVQHMDLS 54

Query: 227 DNQIKAIE-EGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADS 285
           ++ I+     GIL  C  L  L ++  R +     +L     L  L+++     +  A  
Sbjct: 55  NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ 114

Query: 286 FLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKI 345
            L         L  +                    +    L+    +  +      + + 
Sbjct: 115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 346 HILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLIN---LESTGLEDTL 402
             L       + +  +         F  F     L+ L L+  + I    L   G   TL
Sbjct: 175 PNLVHLDLSDSVMLKN-------DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 403 DNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTL 449
             L V    I    +  L  + L  L ++ ++   +      N    
Sbjct: 228 KTLQVFG--IVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQ 272

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 37/278 (13%), Positives = 82/278 (29%), Gaps = 11/278 (3%)

Query: 405 LNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLP 464
           L++    +    +  L  + +       + + +     F+    + H++LS +    S  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVSTL 63

Query: 465 VGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYL----CLAHNHLTEIPEMMFKNLL 520
            G      KL+ L L    L         +  NL  L    C   +       +   + L
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 521 NLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNL 580
           +   L    +        ++  +                +    +T  +   + +     
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 581 NNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILG-LSYLQEIDLSNNQLKTIDDY 639
           ++  L       F   + L+ L L+          L LG +  L+ + +       + D 
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI----VPDG 239

Query: 640 DYGYLPR-LRKLNLNNNNIDAISETCFFNSSQLQIINL 676
               L   L  L +N ++   I+     N    +I  +
Sbjct: 240 TLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 277

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 42/313 (13%), Positives = 90/313 (28%), Gaps = 17/313 (5%)

Query: 159 FSSSDIPIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLV 218
           FS     ++    +    + +   L     D+++E+ L+ N  G       S        
Sbjct: 3   FSIEGKSLKLDAITTEDEKSVFAVLL--EDDSVKEIVLSGNTIGTEAARWLS-ENIASKK 59

Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRI 278
           +L I + SD     +++ I +    LL+  +   +  ++           +   + +   
Sbjct: 60  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 119

Query: 279 GTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKL--NSDTFQG 336
            T     +L    L             E            L       N+L   S     
Sbjct: 120 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179

Query: 337 GAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLEST 396
             F     +H + +  N +     +      +      +      +   +        + 
Sbjct: 180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 239

Query: 397 GLEDTLDNLNVRDNQITTLSSSALNYKL-------LTKLDLSHNNL-----KELEPTAFT 444
                L  L + D  ++   ++A+           L  L L +N +     + L+     
Sbjct: 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299

Query: 445 NVPTLLHLNLSRN 457
            +P LL L L+ N
Sbjct: 300 KMPDLLFLELNGN 312

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 31/313 (9%), Positives = 78/313 (24%), Gaps = 27/313 (8%)

Query: 402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELE----PTAFTNVPTLLHLNLSRN 457
           L    +      ++ +  L    + ++ LS N +             +   L     S  
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFK 517
                +     + L+ L    L    L ++           +   +         E ++ 
Sbjct: 70  -FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 518 NLLNLTYLDLSNNNIVNLRVG---SLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSS 574
           +   L     +        +         P ++ +    N+L       +    + +   
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 575 LEELNLNNNELT--------YLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEI 626
                + N                    +           +  +      +     L+E+
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 627 DLSNNQLKT------IDDYDYGYLPRLRKLNLNNNNID-----AISETCFFNSSQLQIIN 675
            L++  L        +D +       L+ L L  N I+      +          L  + 
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 676 LSFNRLEKLPERL 688
           L+ NR  +  + +
Sbjct: 309 LNGNRFSEEDDVV 321

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 23/251 (9%), Positives = 57/251 (22%), Gaps = 4/251 (1%)

Query: 1   MRRLFDSIVHLSILLVSIVQVSSEPCDTMIDDFPYPCRCKKMSESQLAMDCDNVAFPNGE 60
           +R L  +++    L    +  ++           +  +   +    L  +          
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 61  YPTLPYGLNLVTFSQRWVGHQILPMQIFSSSVSSEPCDTMIDDFPYPCRCKK---MSESQ 117
              L                 I+  +    + S +               K        +
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 118 LAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALR 177
                        +   +    +            I      +  ++ +     S     
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 178 RLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGI 237
            + D         LQ LRL  N           T     + +L  L+L+ N+    ++ +
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 321

Query: 238 LKGCDNLLELR 248
            +    +   R
Sbjct: 322 DE-IREVFSTR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 42/324 (12%), Positives = 103/324 (31%), Gaps = 28/324 (8%)

Query: 219 NLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIP----SVSLNGPRALRILSMA 274
           +L++  ++    K++    L   D++ E+ +  N   +      S ++   + L I   +
Sbjct: 9   SLKLDAITTEDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 275 YNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTF 334
               G +K +   + R L + +L+  +L T+               + +   +      +
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 335 QGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLE 394
                        L+                  + +    ++   L+S+    N L N  
Sbjct: 128 -------------LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 174

Query: 395 STGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNL 454
                 T  +       + T+       +      L    L   +     ++      +L
Sbjct: 175 MKEWAKTFQSHR----LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 230

Query: 455 SRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQY-QFDELLNLKYLCLAHNHLTE--- 510
             +A   +L          L    L+A G  ++       E + L+ L L +N +     
Sbjct: 231 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 290

Query: 511 --IPEMMFKNLLNLTYLDLSNNNI 532
             +  ++ + + +L +L+L+ N  
Sbjct: 291 RTLKTVIDEKMPDLLFLELNGNRF 314

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 26/203 (12%)

Query: 369 TIFSFFQD--FQKLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLT 426
            I   F D  F +    +L    + +  +    +++D +   ++ I ++         +T
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQ-YLPNVT 71

Query: 427 KLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKS 486
           KL L+ N L +       N+  L  L L  N       +     LK L +     + +  
Sbjct: 72  KLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129

Query: 487 IPQY-----------------QFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSN 529
           +                        L  L  L L  N +++I       L  L  L LS 
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187

Query: 530 NNIVNLRVGSLYGLPSMKRLDLS 552
           N+I +LR  +L GL ++  L+L 
Sbjct: 188 NHISDLR--ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 13/171 (7%)

Query: 493 DELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGS--------LYGLP 544
           +EL ++  +   ++ +  +     + L N+T L L+ N + +++  +             
Sbjct: 43  NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN 100

Query: 545 SMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKL 604
            +K L    +          +         +    L +  L     +  T+ S+L  L  
Sbjct: 101 KVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDT 160

Query: 605 AFNKFNYFPKELIL-GLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN 654
              + N     + L GL+ LQ + LS N +  +       L  L  L L +
Sbjct: 161 LSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 6e-04
 Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 19/194 (9%)

Query: 493 DELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS 552
           D         L    +T+        L ++  +  +N++I +++   +  LP++ +L L+
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLN 76

Query: 553 FNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYF 612
            NKLT               ++L+ L     +   +   S     K        +     
Sbjct: 77  GNKLTDI----------KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD 126

Query: 613 PKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQ 672
              L+           +N      D      L +L  L+L +N I  I        ++LQ
Sbjct: 127 INGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181

Query: 673 IINLSFNRLEKLPE 686
            + LS N +  L  
Sbjct: 182 NLYLSKNHISDLRA 195

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	719
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.87
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.82
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.81
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.38
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.86
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.77
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.12
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.88

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=7.5e-28  Score=255.55  Aligned_cols=356  Identities=24%  Similarity=0.329  Sum_probs=193.1

Q ss_pred             ECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCC
Q psy16110        248 RMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN  327 (719)
Q Consensus       248 ~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  327 (719)
                      .++.+.++....  ...+.+|++|+++++.|+.+  +.+..+++|++|++++|+++++++  ++++++|++|++++|++.
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccc
Confidence            444555544321  23456777777777777765  346667777777777777777653  677777777777777776


Q ss_pred             CcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchhccCCEEEc
Q psy16110        328 KLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLEDTLDNLNV  407 (719)
Q Consensus       328 ~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l  407 (719)
                      ++.+       +..+++|+.|+++++.++.+....             ....+.......+.+.........        
T Consensus       102 ~i~~-------l~~l~~L~~L~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~--------  153 (384)
T d2omza2         102 DITP-------LANLTNLTGLTLFNNQITDIDPLK-------------NLTNLNRLELSSNTISDISALSGL--------  153 (384)
T ss_dssp             CCGG-------GTTCTTCCEEECCSSCCCCCGGGT-------------TCTTCSEEEEEEEEECCCGGGTTC--------
T ss_pred             cccc-------cccccccccccccccccccccccc-------------cccccccccccccccccccccccc--------
Confidence            5542       455666666666666554432211             122333333333322222111000        


Q ss_pred             cCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCC
Q psy16110        408 RDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSI  487 (719)
Q Consensus       408 ~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~  487 (719)
                                   ...............     ..+...+.........+ .....  ..+..+++++.+++++|.++.+
T Consensus       154 -------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~--~~~~~l~~~~~l~l~~n~i~~~  212 (384)
T d2omza2         154 -------------TSLQQLSFGNQVTDL-----KPLANLTTLERLDISSN-KVSDI--SVLAKLTNLESLIATNNQISDI  212 (384)
T ss_dssp             -------------TTCSEEEEEESCCCC-----GGGTTCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             -------------ccccccccccccchh-----hhhcccccccccccccc-ccccc--cccccccccceeeccCCccCCC
Confidence                         011111111111111     11223333333344333 11111  1234556666666666666665


Q ss_pred             CchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCC
Q psy16110        488 PQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTK  567 (719)
Q Consensus       488 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  567 (719)
                      .+  +..+++|++|++++|.++.++  .+..+++|+.|++++|++++..+  +..+++|++|++++|+++.+++  +   
T Consensus       213 ~~--~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~--~---  281 (384)
T d2omza2         213 TP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L---  281 (384)
T ss_dssp             GG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--G---
T ss_pred             Cc--ccccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCc--c---
Confidence            43  344566777777777666654  24566677777777776666532  5566666666666666654432  1   


Q ss_pred             CCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCC
Q psy16110        568 SKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRL  647 (719)
Q Consensus       568 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  647 (719)
                        ..++.++.+++++|.+++.  ..+..+++++.|++++|+++++++  +..+++|++|++++|++++++  .+.++++|
T Consensus       282 --~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L  353 (384)
T d2omza2         282 --AGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS--SLANLTNI  353 (384)
T ss_dssp             --TTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTC
T ss_pred             --ccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCCh--hHcCCCCC
Confidence              1235566666666666553  235556666666666666666543  455666666666666666544  25566666


Q ss_pred             CEEeCCCCcCCCCCcccCCCCCCCcEEECCCC
Q psy16110        648 RKLNLNNNNIDAISETCFFNSSQLQIINLSFN  679 (719)
Q Consensus       648 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  679 (719)
                      ++|++++|+++++++  +.++++|+.|+|++|
T Consensus       354 ~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            666666666666554  556666666666655

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.1e-27  Score=254.25  Aligned_cols=356  Identities=22%  Similarity=0.312  Sum_probs=238.0

Q ss_pred             ECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCc
Q psy16110        224 DLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLT  303 (719)
Q Consensus       224 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~  303 (719)
                      .++.+.+++...  .+.+.+|++|++++++|+++.  .+..+++|++|++++|+|+++++  ++++++|++|++++|++.
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l~--gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCcc--ccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccc
Confidence            455555554322  245778999999999999985  47889999999999999999864  899999999999999999


Q ss_pred             ccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEE
Q psy16110        304 TIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSL  383 (719)
Q Consensus       304 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L  383 (719)
                      ++.+  ++++++|+.|+++++.++++..       ......+.......+.+..+.......           .......
T Consensus       102 ~i~~--l~~l~~L~~L~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~  161 (384)
T d2omza2         102 DITP--LANLTNLTGLTLFNNQITDIDP-------LKNLTNLNRLELSSNTISDISALSGLT-----------SLQQLSF  161 (384)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCCCGG-------GTTCTTCSEEEEEEEEECCCGGGTTCT-----------TCSEEEE
T ss_pred             cccc--cccccccccccccccccccccc-------ccccccccccccccccccccccccccc-----------ccccccc
Confidence            8764  8899999999999999988765       234456677777666654433221111           1111111


Q ss_pred             ECCCCCCcCcCCcchhccCCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCC
Q psy16110        384 DLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSL  463 (719)
Q Consensus       384 ~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l  463 (719)
                      .........   ........                       ......+....  ...+..+++++.+++++| .+..+
T Consensus       162 ~~~~~~~~~---~~~~~~~~-----------------------~~~~~~~~~~~--~~~~~~l~~~~~l~l~~n-~i~~~  212 (384)
T d2omza2         162 GNQVTDLKP---LANLTTLE-----------------------RLDISSNKVSD--ISVLAKLTNLESLIATNN-QISDI  212 (384)
T ss_dssp             EESCCCCGG---GTTCTTCC-----------------------EEECCSSCCCC--CGGGGGCTTCSEEECCSS-CCCCC
T ss_pred             ccccchhhh---hccccccc-----------------------ccccccccccc--ccccccccccceeeccCC-ccCCC
Confidence            111111111   11111122                       22222222221  122344555555555555 34443


Q ss_pred             CCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCC
Q psy16110        464 PVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGL  543 (719)
Q Consensus       464 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l  543 (719)
                      ++  +..+++|++|++++|.++.++  .+..+++|+.|++++|.++++++  +..+++|++|+++++++.+..  .+..+
T Consensus       213 ~~--~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~  284 (384)
T d2omza2         213 TP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGL  284 (384)
T ss_dssp             GG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTC
T ss_pred             Cc--ccccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--ccccc
Confidence            32  234456666666666666554  35566777777777777776654  566777777777777776653  36677


Q ss_pred             CCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCC
Q psy16110        544 PSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYL  623 (719)
Q Consensus       544 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  623 (719)
                      +.++.+.+++|.++++..  +     ..++++++|++++|+++++.  .+..+++|++|++++|+++.++  .+.++++|
T Consensus       285 ~~l~~l~~~~n~l~~~~~--~-----~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L  353 (384)
T d2omza2         285 TALTNLELNENQLEDISP--I-----SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS--SLANLTNI  353 (384)
T ss_dssp             TTCSEEECCSSCCSCCGG--G-----GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTC
T ss_pred             cccccccccccccccccc--c-----chhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCCh--hHcCCCCC
Confidence            778888888887765432  2     12477888888888888763  3778888888888888888776  37788889


Q ss_pred             CEEECCCCCCcccCcccCCCCCCCCEEeCCCC
Q psy16110        624 QEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN  655 (719)
Q Consensus       624 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N  655 (719)
                      ++|++++|+++++++  +.++++|++|+|++|
T Consensus       354 ~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999999998888775  788889999998887

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.3e-26  Score=237.64  Aligned_cols=279  Identities=24%  Similarity=0.359  Sum_probs=219.1

Q ss_pred             CCEEEccCCcccccccCccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCC
Q psy16110        402 LDNLNVRDNQITTLSSSALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAA  481 (719)
Q Consensus       402 L~~L~l~~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~  481 (719)
                      .+.++-++.+++.+|..+  .+++++|++++|+++.+++..|.++++|++|++++| .+..+++..|..+++|+.|++++
T Consensus        12 ~~~~~C~~~~L~~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n-~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCCccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccc-cccccchhhhhCCCccCEecccC
Confidence            444555555555555433  256777777777777777767777777788888777 66667666677778888888888


Q ss_pred             CCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCcccc--ccCCccCCCCCCCEEEccCCcCCcc
Q psy16110        482 TGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVN--LRVGSLYGLPSMKRLDLSFNKLTTF  559 (719)
Q Consensus       482 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~~  559 (719)
                      |+++.++...   ...++.|++.+|.+..++...+.....+..++...|....  ..+..+..+++|+.+++++|.++.+
T Consensus        89 n~l~~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          89 NQLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             SCCSBCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CccCcCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            8877776532   3567788888888888888778888888888888775433  4455677888999999999988876


Q ss_pred             cCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcc
Q psy16110        560 KGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDY  639 (719)
Q Consensus       560 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  639 (719)
                      +...        +++|++|++++|..+...+..|..++.+++|++++|.++++++.++.++++|++|+|++|+++.++. 
T Consensus       166 ~~~~--------~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~-  236 (305)
T d1xkua_         166 PQGL--------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-  236 (305)
T ss_dssp             CSSC--------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-
T ss_pred             Cccc--------CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccc-
Confidence            5443        3789999999999998888889999999999999999999988889999999999999999998865 


Q ss_pred             cCCCCCCCCEEeCCCCcCCCCCcccC------CCCCCCcEEECCCCcCC--CcChHhhcCcccc
Q psy16110        640 DYGYLPRLRKLNLNNNNIDAISETCF------FNSSQLQIINLSFNRLE--KLPERLFNTFLYT  695 (719)
Q Consensus       640 ~l~~l~~L~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~Ls~N~l~--~i~~~~~~~l~~L  695 (719)
                      .+..+++|++|+|++|+|+.+....|      ...++|+.|+|++|+++  .+++.+|+.+...
T Consensus       237 ~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~  300 (305)
T d1xkua_         237 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR  300 (305)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred             ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccC
Confidence            78899999999999999998876555      34678999999999887  6888888776554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.4e-26  Score=229.32  Aligned_cols=226  Identities=23%  Similarity=0.339  Sum_probs=184.0

Q ss_pred             EEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEcc-CC
Q psy16110        476 VLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLS-FN  554 (719)
Q Consensus       476 ~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~-~n  554 (719)
                      .++.++++++.+|...   .+++++|+|++|+++.++..+|.++++|++|++++|++..+.+..+..+..++.+... .+
T Consensus        15 ~v~c~~~~L~~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCCccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            4566666677666532   2457788888888887777777788888888888888888777777777888887664 45


Q ss_pred             cCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCc
Q psy16110        555 KLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLK  634 (719)
Q Consensus       555 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  634 (719)
                      .++.++...|.     ++++|++|++++|.+....+..+...++|+.+++++|+++.+++.+|..+++|++|++++|++.
T Consensus        92 ~~~~l~~~~~~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~  166 (284)
T d1ozna_          92 QLRSVDPATFH-----GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS  166 (284)
T ss_dssp             TCCCCCTTTTT-----TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccccccchhhc-----ccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc
Confidence            56666555554     4588888888888888777777888888999999999998888888888889999999999999


Q ss_pred             ccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCCc
Q psy16110        635 TIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHR  713 (719)
Q Consensus       635 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~  713 (719)
                      ++++.+|.++++|+++++++|+++++.+..|..+++|++||+++|+++.+++.+|+++++| +|++++||+        .
T Consensus       167 ~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l--------~  238 (284)
T d1ozna_         167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW--------V  238 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE--------E
T ss_pred             ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC--------C
Confidence            8888888899999999999999999888889989999999999999999998899999999 999999998        8


Q ss_pred             cccC
Q psy16110        714 CECA  717 (719)
Q Consensus       714 C~c~  717 (719)
                      |+|+
T Consensus       239 C~C~  242 (284)
T d1ozna_         239 CDCR  242 (284)
T ss_dssp             CSGG
T ss_pred             CCcc
Confidence            8886

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=5.1e-25  Score=225.70  Aligned_cols=283  Identities=24%  Similarity=0.336  Sum_probs=240.1

Q ss_pred             CccEEECCCCCCcCcCCcchhccCCEEEccCCcccccccCcc-CCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCC
Q psy16110        379 KLKSLDLNGNFLINLESTGLEDTLDNLNVRDNQITTLSSSAL-NYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRN  457 (719)
Q Consensus       379 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  457 (719)
                      ..+.++.++..++.+|. ..++.+++|++++|+++.+++..+ .+++|++|++++|.+..+.+..|.++++|++|++++|
T Consensus        11 ~~~~~~C~~~~L~~lP~-~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             ETTEEECTTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             cCCEEEecCCCCCccCC-CCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            45778888888888876 445789999999999999987655 5899999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCC--CCChhhhcCCCCCCEEeCCCCccccc
Q psy16110        458 AHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLT--EIPEMMFKNLLNLTYLDLSNNNIVNL  535 (719)
Q Consensus       458 ~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~  535 (719)
                       .++.+|...   ...++.|++.+|.+..++...+.....+..++...+...  ......|..+++|+++++++|.+..+
T Consensus        90 -~l~~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          90 -QLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             -CCSBCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             -ccCcCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence             888888653   467899999999999999888888999999999888544  33445688899999999999998876


Q ss_pred             cCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChh
Q psy16110        536 RVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKE  615 (719)
Q Consensus       536 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  615 (719)
                      ...   .+++|++|++++|..+......+..     ++.+++|++++|.+++..+..+..+++|++|+|++|+++.+|. 
T Consensus       166 ~~~---~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~-  236 (305)
T d1xkua_         166 PQG---LPPSLTELHLDGNKITKVDAASLKG-----LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-  236 (305)
T ss_dssp             CSS---CCTTCSEEECTTSCCCEECTGGGTT-----CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-
T ss_pred             Ccc---cCCccCEEECCCCcCCCCChhHhhc-----cccccccccccccccccccccccccccceeeeccccccccccc-
Confidence            433   3679999999999988777666653     5899999999999999999999999999999999999999976 


Q ss_pred             hhcCCCCCCEEECCCCCCcccCcccC------CCCCCCCEEeCCCCcCC--CCCcccCCCCCCCcEEE
Q psy16110        616 LILGLSYLQEIDLSNNQLKTIDDYDY------GYLPRLRKLNLNNNNID--AISETCFFNSSQLQIIN  675 (719)
Q Consensus       616 ~l~~l~~L~~L~Ls~n~l~~~~~~~l------~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~  675 (719)
                      ++.++++|++|++++|+|+.++...|      ...++|+.|+|++|++.  .+.|.+|..+.....++
T Consensus       237 ~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~~  304 (305)
T d1xkua_         237 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ  304 (305)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred             ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCcccc
Confidence            58899999999999999999876555      35688999999999986  47788887666655554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3e-26  Score=232.22  Aligned_cols=237  Identities=26%  Similarity=0.434  Sum_probs=201.9

Q ss_pred             CCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCccc
Q psy16110        104 FPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKL  183 (719)
Q Consensus       104 ~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~  183 (719)
                      ||..|.|..  .....|+|++.+++     ++|.                   .++    .++++|+|++|+|+++|...
T Consensus         2 cp~~C~C~~--~~~~~v~c~~~~L~-----~iP~-------------------~ip----~~~~~L~Ls~N~i~~i~~~~   51 (284)
T d1ozna_           2 CPGACVCYN--EPKVTTSCPQQGLQ-----AVPV-------------------GIP----AASQRIFLHGNRISHVPAAS   51 (284)
T ss_dssp             CCTTCEEEC--SSSCEEECCSSCCS-----SCCT-------------------TCC----TTCSEEECTTSCCCEECTTT
T ss_pred             cCCCCEEcC--CCCeEEEcCCCCCC-----ccCC-------------------CCC----CCCCEEECcCCcCCCCCHHH
Confidence            567999963  34578899876554     4443                   232    24899999999999999998


Q ss_pred             ccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECc-CCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCC
Q psy16110        184 FSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLS-DNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSL  262 (719)
Q Consensus       184 f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l  262 (719)
                      |. .++.|++|++++|.+..     +....+.++..++.++.. .+.+..+++..|+++++|++|++++|.+..++...+
T Consensus        52 f~-~l~~L~~L~ls~n~l~~-----i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  125 (284)
T d1ozna_          52 FR-ACRNLTILWLHSNVLAR-----IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF  125 (284)
T ss_dssp             TT-TCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             hh-ccccccccccccccccc-----cccccccccccccccccccccccccccchhhcccccCCEEecCCccccccccccc
Confidence            86 56899999999999986     444678889999998865 667888988899999999999999999999888889


Q ss_pred             CCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCC
Q psy16110        263 NGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL  342 (719)
Q Consensus       263 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l  342 (719)
                      ..+++|+.+++++|.++.+++..|..+++|++|++++|.++.+++.+|.++++|+++++++|+++.+.+.     .|..+
T Consensus       126 ~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~-----~f~~l  200 (284)
T d1ozna_         126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH-----AFRDL  200 (284)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-----TTTTC
T ss_pred             chhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChh-----Hhhhh
Confidence            9999999999999999999989999999999999999999999999999999999999999999998776     46678


Q ss_pred             CCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcC
Q psy16110        343 AKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLIN  392 (719)
Q Consensus       343 ~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~  392 (719)
                      ++|++|++++|++..++..           .|+.+++|++|++++|.+..
T Consensus       201 ~~L~~L~l~~N~i~~~~~~-----------~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         201 GRLMTLYLFANNLSALPTE-----------ALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTCCEEECCSSCCSCCCHH-----------HHTTCTTCCEEECCSSCEEC
T ss_pred             hhccccccccccccccccc-----------ccccccccCEEEecCCCCCC
Confidence            9999999999999766543           45568899999999998764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.8e-25  Score=220.16  Aligned_cols=201  Identities=26%  Similarity=0.338  Sum_probs=130.7

Q ss_pred             CccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCc
Q psy16110        497 NLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLE  576 (719)
Q Consensus       497 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~  576 (719)
                      .+.+++.+++.++++|...   .+++++|+|++|+|+++.+.+|.++++|++|+|++|+++.++...       .+++|+
T Consensus        11 ~~~~v~C~~~~L~~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~-------~l~~L~   80 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-------TLPVLG   80 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCS-------CCTTCC
T ss_pred             CCeEEEccCCCCCeeCcCc---CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccc-------cccccc
Confidence            3444455555555554321   134555666666655555555556666666666666655543221       236666


Q ss_pred             EEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCc
Q psy16110        577 ELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNN  656 (719)
Q Consensus       577 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~  656 (719)
                      +|++++|+++.. +..+..+++|+.|++++|.+..++...+..+.+++.|++++|.+..+++..+..++.|+.+++++|+
T Consensus        81 ~L~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cccccccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            666666666654 4456667777777777777777666666777777777777777777777667777777777777777


Q ss_pred             CCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCCccccC
Q psy16110        657 IDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHRCECA  717 (719)
Q Consensus       657 l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~  717 (719)
                      ++++++..|..+++|++|||++|+|+.+|+++| .+++| .|+|++||+        .|+|+
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~-~~~~L~~L~L~~Np~--------~CdC~  212 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPW--------LCNCE  212 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCB--------CCSGG
T ss_pred             ccccCccccccccccceeecccCCCcccChhHC-CCCCCCEEEecCCCC--------CCCcc
Confidence            777777777777777777777777777777654 46677 777777777        77775

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=7.6e-25  Score=225.21  Aligned_cols=248  Identities=23%  Similarity=0.231  Sum_probs=134.2

Q ss_pred             CccEEEccCCCCCCc--CcccccCCCcCcEEeCcC-CCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccE
Q psy16110        424 LLTKLDLSHNNLKEL--EPTAFTNVPTLLHLNLSR-NAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKY  500 (719)
Q Consensus       424 ~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~-n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~  500 (719)
                      +++.|+++++.+.+.  .|..++++++|++|+|++ |...+.+|.. |.++++|++|++++|++.++++..+..+.+|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccccccccccccccchhhhcc
Confidence            466777777766652  345566677777777764 4233455543 455555555555555555555444555555555


Q ss_pred             EEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEEC
Q psy16110        501 LCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNL  580 (719)
Q Consensus       501 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~L  580 (719)
                      +++++|.+....+..+..++.++++++++|.+.+..|..+..+.++                            ++.+++
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l----------------------------~~~l~~  181 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL----------------------------FTSMTI  181 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT----------------------------CCEEEC
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccc----------------------------cccccc
Confidence            5555554443333344555555555555555554444444444333                            244455


Q ss_pred             cCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCC
Q psy16110        581 NNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAI  660 (719)
Q Consensus       581 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  660 (719)
                      ++|++++..+..+..+..+ .++++++...+..+..+..+++++.+++++|.+.+.++ .+..+++|++|++++|++++.
T Consensus       182 ~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~  259 (313)
T d1ogqa_         182 SRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGT  259 (313)
T ss_dssp             CSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEEC
T ss_pred             ccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeeccc
Confidence            5555554444444444332 45555555555444445555566666666665555443 355556666666666666655


Q ss_pred             CcccCCCCCCCcEEECCCCcCC-CcChHhhcCcccc-EEecCCCce
Q psy16110        661 SETCFFNSSQLQIINLSFNRLE-KLPERLFNTFLYT-NYDMAPNLV  704 (719)
Q Consensus       661 ~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L-~L~l~~N~l  704 (719)
                      .|..|.++++|++|||++|+|+ .+|.  +.++++| .+++++|+.
T Consensus       260 iP~~l~~L~~L~~L~Ls~N~l~g~iP~--~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         260 LPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCSSSE
T ss_pred             CChHHhCCCCCCEEECcCCcccccCCC--cccCCCCCHHHhCCCcc
Confidence            5555666666666666666665 4543  3455666 666666664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.3e-23  Score=207.26  Aligned_cols=206  Identities=28%  Similarity=0.319  Sum_probs=165.5

Q ss_pred             ccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCcccccc
Q psy16110        107 PCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFSP  186 (719)
Q Consensus       107 ~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~f~~  186 (719)
                      .|.|... .+...|+|.+.+++     .+|.                   .++    .++++|+|++|+|+.++...|. 
T Consensus         3 ~C~~~~~-~~~~~v~C~~~~L~-----~iP~-------------------~lp----~~l~~L~Ls~N~i~~l~~~~f~-   52 (266)
T d1p9ag_           3 ICEVSKV-ASHLEVNCDKRNLT-----ALPP-------------------DLP----KDTTILHLSENLLYTFSLATLM-   52 (266)
T ss_dssp             SSEEECS-TTCCEEECTTSCCS-----SCCS-------------------CCC----TTCCEEECTTSCCSEEEGGGGT-
T ss_pred             ccEEccc-CCCeEEEccCCCCC-----eeCc-------------------CcC----cCCCEEECcCCcCCCcCHHHhh-
Confidence            5778743 33467899887666     3333                   222    2599999999999999988885 


Q ss_pred             hhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCC
Q psy16110        187 HRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPR  266 (719)
Q Consensus       187 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~  266 (719)
                      .+++|++|+|++|.++. +      ..++.+++|++|+|++|+++..+. .+.++++|++|++++|.+.+++...+..+.
T Consensus        53 ~l~~L~~L~L~~N~l~~-l------~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  124 (266)
T d1p9ag_          53 PYTRLTQLNLDRAELTK-L------QVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG  124 (266)
T ss_dssp             TCTTCCEEECTTSCCCE-E------ECCSCCTTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCT
T ss_pred             ccccccccccccccccc-c------cccccccccccccccccccccccc-ccccccccccccccccccceeecccccccc
Confidence            57889999999998874 2      245678899999999998887755 578888999999999988888888888888


Q ss_pred             CCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCC
Q psy16110        267 ALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIH  346 (719)
Q Consensus       267 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~  346 (719)
                      ++++|++++|.++.+++..+..+++|+.+++++|++++++++.|..+++|++|+|++|+|+.++..      +..+++|+
T Consensus       125 ~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~------~~~~~~L~  198 (266)
T d1p9ag_         125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG------FFGSHLLP  198 (266)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT------TTTTCCCS
T ss_pred             ccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChh------HCCCCCCC
Confidence            999999999998888888888888899999999998888888888888888999988888888764      33567788


Q ss_pred             EEeCCCCCCC
Q psy16110        347 ILNLGYNRLN  356 (719)
Q Consensus       347 ~L~L~~n~l~  356 (719)
                      .|+|++|.+.
T Consensus       199 ~L~L~~Np~~  208 (266)
T d1p9ag_         199 FAFLHGNPWL  208 (266)
T ss_dssp             EEECCSCCBC
T ss_pred             EEEecCCCCC
Confidence            8888888763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=2.7e-24  Score=221.01  Aligned_cols=224  Identities=21%  Similarity=0.288  Sum_probs=185.6

Q ss_pred             CccEEEcCCCCCCCC--CchhhcCCCCccEEEccC-CcCC-CCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCE
Q psy16110        473 KLEVLDLAATGLKSI--PQYQFDELLNLKYLCLAH-NHLT-EIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKR  548 (719)
Q Consensus       473 ~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~L~~-n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~  548 (719)
                      .++.|+++++.+.+.  .+..++++++|++|+|++ |.++ .+|. .+.++++|++|++++|++.+..+..+..+.+|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~-~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccc-ccccccccchhhhccccccccccccccchhhhcc
Confidence            567777777777652  234678888888888886 6776 4554 4788889999999999888888888888889999


Q ss_pred             EEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCc-cEEEcCCCCCCCcChhhhcCCCCCCEEE
Q psy16110        549 LDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKL-KTLKLAFNKFNYFPKELILGLSYLQEID  627 (719)
Q Consensus       549 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~l~~l~~L~~L~  627 (719)
                      +++++|.+....+..+.     .++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..+..+..+.. ..++
T Consensus       130 l~l~~N~~~~~~p~~l~-----~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~  203 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSIS-----SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVD  203 (313)
T ss_dssp             EECCSSEEESCCCGGGG-----GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEE
T ss_pred             cccccccccccCchhhc-----cCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            99998887655444443     45889999999999998888888888776 89999999999877777777654 4799


Q ss_pred             CCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCC-CcChHhhcCcccc-EEecCCCcee
Q psy16110        628 LSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE-KLPERLFNTFLYT-NYDMAPNLVF  705 (719)
Q Consensus       628 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L-~L~l~~N~l~  705 (719)
                      ++++...+..+..+..+++|+.+++++|.+.+.++. +..+++|+.|+|++|+++ .+|+ .|.++++| +|+|++|++.
T Consensus       204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~-~~~~~~L~~L~Ls~N~l~g~iP~-~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-cccccccccccCccCeecccCCh-HHhCCCCCCEEECcCCccc
Confidence            999999988888899999999999999999987764 788899999999999999 6776 57899999 9999999996

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.87  E-value=2.6e-19  Score=186.43  Aligned_cols=99  Identities=22%  Similarity=0.342  Sum_probs=71.0

Q ss_pred             CCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEc
Q psy16110        218 VNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIIL  297 (719)
Q Consensus       218 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  297 (719)
                      .++++|||+++.++.+|+    ..++|++|++++|+|+++|..    +.+|+.|++++|+++.+..  +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSD--L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCS--C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCCCCC----CCCCCCEEECCCCCCcccccc----hhhhhhhhhhhcccchhhh--h--ccccccccc
Confidence            468888888888887764    256788888888888888752    4578888888888776642  1  245777888


Q ss_pred             cCCCCcccCcccccCcccCcEEEcCCCCCCCcC
Q psy16110        298 RGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLN  330 (719)
Q Consensus       298 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~  330 (719)
                      ++|.+..++.  ++.+++|++|+++++.+...+
T Consensus       106 ~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         106 SNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             CSSCCSSCCC--CTTCTTCCEEECCSSCCSCCC
T ss_pred             cccccccccc--hhhhccceeeccccccccccc
Confidence            8777776653  566777777777777665543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.87  E-value=3.2e-19  Score=185.67  Aligned_cols=57  Identities=28%  Similarity=0.538  Sum_probs=28.3

Q ss_pred             CCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCCCcC
Q psy16110        621 SYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLEKLP  685 (719)
Q Consensus       621 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~  685 (719)
                      ++|++|++++|+++.++.    .+++|+.|++++|+|+.++..    +++|++|++++|+++.+|
T Consensus       284 ~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~L~~l~~~----~~~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         284 PSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLREFP  340 (353)
T ss_dssp             TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC
T ss_pred             CCCCEEECCCCccCcccc----ccCCCCEEECCCCcCCccccc----cCCCCEEECcCCcCCCCC
Confidence            445555555555554432    234555555555555544321    235555555555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.3e-20  Score=181.74  Aligned_cols=215  Identities=20%  Similarity=0.293  Sum_probs=167.3

Q ss_pred             cccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccccCccccc
Q psy16110        106 YPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRRLSDKLFS  185 (719)
Q Consensus       106 ~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~l~~~~f~  185 (719)
                      ..|+|.     ...++|.+.+++                        .+|..++.    ++++||+++|.|+.+|..+|.
T Consensus         4 ~~C~C~-----~~~i~c~~~~l~------------------------~iP~~l~~----~l~~L~Ls~n~i~~l~~~~f~   50 (242)
T d1xwdc1           4 RICHCS-----NRVFLCQESKVT------------------------EIPSDLPR----NAIELRFVLTKLRVIQKGAFS   50 (242)
T ss_dssp             SSEEEC-----SSEEEEESCSCS------------------------SCCSCSCS----CCSEEEEESCCCCEECTTTTT
T ss_pred             CcCCCc-----CCEEEEeCCCCC------------------------CcCCCCCC----CCCEEECcCCcCCccChhHhh
Confidence            468886     357889875554                        34433432    599999999999999999996


Q ss_pred             chhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcC-CCCcccCcCccCCCccCcEEECCCCcCCcCCCCC-CC
Q psy16110        186 PHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSD-NQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS-LN  263 (719)
Q Consensus       186 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~-l~  263 (719)
                       .+++|++|++++|.+...++    +.+|.++++++++.+.. |.+..+++..|.++++|++|++++|.++..+... +.
T Consensus        51 -~l~~L~~L~ls~n~~~~~i~----~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~  125 (242)
T d1xwdc1          51 -GFGDLEKIEISQNDVLEVIE----ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH  125 (242)
T ss_dssp             -TCTTCCEEEEESCTTCCEEC----SSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTC
T ss_pred             -ccchhhhhhhccccccceee----ccccccccccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence             57899999999998876443    46789999999999764 6788888888999999999999999998776532 34


Q ss_pred             CCCCCcEEEcCCCcCcccCCCcccCCC-ccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCC
Q psy16110        264 GPRALRILSMAYNRIGTLKADSFLSQR-WLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGL  342 (719)
Q Consensus       264 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l  342 (719)
                      .+..+..+..+++.+..+.+..|.+++ .++.|++++|+++.+...+|.....++.+.+++|.++.++..     .|.++
T Consensus       126 ~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~-----~f~~l  200 (242)
T d1xwdc1         126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPND-----VFHGA  200 (242)
T ss_dssp             BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTT-----TTTTS
T ss_pred             cccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHH-----HhcCC
Confidence            556677777788888888877777764 788899999999988877766544444556788889888776     45678


Q ss_pred             CCCCEEeCCCCCCCccccccc
Q psy16110        343 AKIHILNLGYNRLNKLNSDTF  363 (719)
Q Consensus       343 ~~L~~L~L~~n~l~~i~~~~f  363 (719)
                      ++|++|++++|+++.++...|
T Consensus       201 ~~L~~L~Ls~N~l~~l~~~~~  221 (242)
T d1xwdc1         201 SGPVILDISRTRIHSLPSYGL  221 (242)
T ss_dssp             CCCSEEECTTSCCCCCCSSSC
T ss_pred             CCCCEEECCCCcCCccCHHHH
Confidence            899999999999887765544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.6e-20  Score=180.91  Aligned_cols=218  Identities=16%  Similarity=0.132  Sum_probs=118.4

Q ss_pred             EEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCcCCC-CChhhhcCCCCCCEEeCCC
Q psy16110        451 HLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNHLTE-IPEMMFKNLLNLTYLDLSN  529 (719)
Q Consensus       451 ~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~  529 (719)
                      .++.++. .++++|.+.+   +++++|++++|.++.++..+|.++++|++|++++|.+.. ++..+|..++.++++.+..
T Consensus        12 ~i~c~~~-~l~~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          12 VFLCQES-KVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             EEEEESC-SCSSCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             EEEEeCC-CCCCcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            4444444 4555554432   345666666666666665566666666666666665543 4444566666666666543


Q ss_pred             -CccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCC-CccEEEcCCC
Q psy16110        530 -NNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHS-KLKTLKLAFN  607 (719)
Q Consensus       530 -n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n  607 (719)
                       |.+....+..|.++++|+++++++|.+...+...+.    ..++.+..+..+++.+..+.+..|..++ .++.|++++|
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~----~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n  163 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI----HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  163 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTT----CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             cccccccccccccccccccccccchhhhccccccccc----ccccccccccccccccccccccccccccccceeeecccc
Confidence             455555556666666666666666666544332211    1234444555555555555555555443 5556666666


Q ss_pred             CCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEEC
Q psy16110        608 KFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINL  676 (719)
Q Consensus       608 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  676 (719)
                      +++.++..++.....++.+++++|+++.++...|.++++|++|++++|+++.+++..|.++++|+.+++
T Consensus       164 ~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         164 GIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            666555554433222223344555566555555566666666666666666555555555555554444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=2e-19  Score=169.81  Aligned_cols=138  Identities=27%  Similarity=0.445  Sum_probs=84.8

Q ss_pred             CCCcccccccCCCCcccccccccccCCCCCCCCCCCCchhhhhcccccCCcCccccccCCCCcccEEEcCCCCccc-cCc
Q psy16110        103 DFPYPCRCKKMSESQLAMDCDNVAFPNGEYPTLPYGLNLVTFSQRWVGHQILPMQIFSSSDIPIRRLDFSGNALRR-LSD  181 (719)
Q Consensus       103 ~~~~~C~c~~~~~~~~~~~c~~~~l~~~~~~~~p~~~~~~~l~~~~~~~~~lp~~~~~~~~~~L~~L~Ls~n~i~~-l~~  181 (719)
                      +||..|.|..     ..|+|.+.+++     .||.                   .++    .++++|+|++|+|++ ++.
T Consensus         1 ~CP~~C~C~~-----~~v~Cs~~~L~-----~iP~-------------------~lp----~~l~~L~Ls~N~i~~~~~~   47 (192)
T d1w8aa_           1 DCPAMCHCEG-----TTVDCTGRGLK-----EIPR-------------------DIP----LHTTELLLNDNELGRISSD   47 (192)
T ss_dssp             CCCTTSEEET-----TEEECTTSCCS-----SCCS-------------------CCC----TTCSEEECCSCCCCSBCCS
T ss_pred             CcCCCCEEcC-----CEEEEeCCCcC-----ccCC-------------------CCC----CCCCEEEeCCCCCcccccc
Confidence            3677899973     57889876665     3333                   232    248888999888874 556


Q ss_pred             ccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCC
Q psy16110        182 KLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVS  261 (719)
Q Consensus       182 ~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~  261 (719)
                      ..|. .+++|++|+|++|.+..     +.++.|..+++|++|+|++|+|+.+++++|.++++|++|+|++|+|+.+++.+
T Consensus        48 ~~f~-~l~~L~~L~L~~N~i~~-----~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~  121 (192)
T d1w8aa_          48 GLFG-RLPHLVKLELKRNQLTG-----IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS  121 (192)
T ss_dssp             CSGG-GCTTCCEEECCSSCCCC-----BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS
T ss_pred             cccC-CCceEeeeecccccccc-----ccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHH
Confidence            6553 44566666666666654     22345556666666666666666666655666666666666666666665555


Q ss_pred             CCCCCCCcEEEcCCCcCc
Q psy16110        262 LNGPRALRILSMAYNRIG  279 (719)
Q Consensus       262 l~~l~~L~~L~Ls~n~i~  279 (719)
                      |..+++|++|+|++|.+.
T Consensus       122 f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         122 FEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             STTCTTCCEEECTTCCBC
T ss_pred             hcCCcccccccccccccc
Confidence            555555555555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6e-22  Score=214.46  Aligned_cols=390  Identities=18%  Similarity=0.128  Sum_probs=182.6

Q ss_pred             CCcEEEcCCCcCcccCC-CcccCCCccCEEEccCCCCcccC----cccccCcccCcEEEcCCCCCCCcCCCccccccccC
Q psy16110        267 ALRILSMAYNRIGTLKA-DSFLSQRWLERIILRGNRLTTIE----GGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNG  341 (719)
Q Consensus       267 ~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  341 (719)
                      +|++||+++|+++.... ..+..+++++.|+|++|.++...    ..++..+++|++|+|++|+++..+...+.......
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            35566666666554321 22344566666666666655322    23345566666666666666432222111100112


Q ss_pred             CCCCCEEeCCCCCCCccccccccCcccccccccccCCCccEEECCCCCCcCcCCcchh-------ccCCEEEccCCcccc
Q psy16110        342 LAKIHILNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLNGNFLINLESTGLE-------DTLDNLNVRDNQITT  414 (719)
Q Consensus       342 l~~L~~L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~-------~~L~~L~l~~n~l~~  414 (719)
                      ..+|++|++++|+++..+..       .++..+..+++|++|++++|.+.+.......       ............+..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~-------~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  155 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCG-------VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA  155 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHH-------HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             CCCCCEEECCCCCccccccc-------cccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccch
Confidence            34567777777666543211       1233455566677777776665543221111       111222222221111


Q ss_pred             ccc-----CccCCCCccEEEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCC-
Q psy16110        415 LSS-----SALNYKLLTKLDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIP-  488 (719)
Q Consensus       415 ~~~-----~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~-  488 (719)
                      ...     .......++.++++++.........+..                    ...........+++..+.+.... 
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~--------------------~l~~~~~~~~~l~~~~~~~~~~~~  215 (460)
T d1z7xw1         156 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ--------------------GLKDSPCQLEALKLESCGVTSDNC  215 (460)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH--------------------HHHHSCCCCCEEECTTSCCBTTHH
T ss_pred             hhhccccccccccccccccccccccccccccccccc--------------------ccccccccccccccccccccchhh
Confidence            100     0001334445555444332110000000                    00000112333444444333211 


Q ss_pred             ---chhhcCCCCccEEEccCCcCCC-----CChhhhcCCCCCCEEeCCCCcccccc----CCccCCCCCCCEEEccCCcC
Q psy16110        489 ---QYQFDELLNLKYLCLAHNHLTE-----IPEMMFKNLLNLTYLDLSNNNIVNLR----VGSLYGLPSMKRLDLSFNKL  556 (719)
Q Consensus       489 ---~~~~~~~~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~----~~~l~~l~~L~~L~L~~n~l  556 (719)
                         ...+.....++.+++.+|.+..     .....+.....++.+++++|.+....    ...+...+.++.+++++|.+
T Consensus       216 ~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i  295 (460)
T d1z7xw1         216 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL  295 (460)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             hcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence               1123344556666666665431     11122334556666666666654321    12233456666666666665


Q ss_pred             CcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcC----cccCCCCccEEEcCCCCCCCcCh----hhh-cCCCCCCEEE
Q psy16110        557 TTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPS----SFTIHSKLKTLKLAFNKFNYFPK----ELI-LGLSYLQEID  627 (719)
Q Consensus       557 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~----~~l-~~l~~L~~L~  627 (719)
                      ++.....+........+.|+.+++++|.++.....    .+...++|++|+|++|+++....    +++ ...+.|++|+
T Consensus       296 ~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~  375 (460)
T d1z7xw1         296 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW  375 (460)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             cccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEE
Confidence            43221111000001125677777777776654222    23345677778887777764221    112 3456788888


Q ss_pred             CCCCCCcccC----cccCCCCCCCCEEeCCCCcCCCCCcc----cCC-CCCCCcEEECCCCcCCC
Q psy16110        628 LSNNQLKTID----DYDYGYLPRLRKLNLNNNNIDAISET----CFF-NSSQLQIINLSFNRLEK  683 (719)
Q Consensus       628 Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~----~~~-~l~~L~~L~Ls~N~l~~  683 (719)
                      |++|.++...    ...+..+++|++|+|++|+|+.....    .+. +...|+.|++++|.+..
T Consensus       376 Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         376 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            8888776421    22345567788888888877653221    122 33468888888887764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=1.1e-18  Score=169.50  Aligned_cols=186  Identities=24%  Similarity=0.333  Sum_probs=104.0

Q ss_pred             CCCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCC
Q psy16110        494 ELLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTS  573 (719)
Q Consensus       494 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~  573 (719)
                      .+.+|+.|++.+|.++++..  +..+++|++|++++|++++..+  +..+++|+++++++|.+++++.  +     ..++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~~--l-----~~l~  107 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--I-----AGLQ  107 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGG--G-----TTCT
T ss_pred             HcCCcCEEECCCCCCCcchh--HhcCCCCcEeecCCceeecccc--cccccccccccccccccccccc--c-----cccc
Confidence            34455555555555555532  4555555555555555555432  4555555666665555554331  1     1235


Q ss_pred             CCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCC
Q psy16110        574 SLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLN  653 (719)
Q Consensus       574 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  653 (719)
                      +|+.++++++...+.  ..+...+.++.+.++++.+....+  +.++++|+.|++++|.+....+  ++++++|++|+++
T Consensus       108 ~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls  181 (227)
T d1h6ua2         108 SIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD  181 (227)
T ss_dssp             TCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             ccccccccccccccc--chhccccchhhhhchhhhhchhhh--hccccccccccccccccccchh--hcccccceecccC
Confidence            566666665555443  224455566666666665554432  4455666666666666654433  5566666666666


Q ss_pred             CCcCCCCCcccCCCCCCCcEEECCCCcCCCcChHhhcCcccc-EEecC
Q psy16110        654 NNNIDAISETCFFNSSQLQIINLSFNRLEKLPERLFNTFLYT-NYDMA  700 (719)
Q Consensus       654 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~L~l~  700 (719)
                      +|+++++++  +..+++|++|+|++|+++++++  |+++++| .|+++
T Consensus       182 ~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             SSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             CCccCCChh--hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            666665543  5556666666666666666654  5666666 66654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=4.9e-18  Score=164.93  Aligned_cols=202  Identities=22%  Similarity=0.333  Sum_probs=111.1

Q ss_pred             EEccCCCCCCcCcccccCCCcCcEEeCcCCCCCCCCCCCCCCCCCCccEEEcCCCCCCCCCchhhcCCCCccEEEccCCc
Q psy16110        428 LDLSHNNLKELEPTAFTNVPTLLHLNLSRNAHLSSLPVGGFDPLKKLEVLDLAATGLKSIPQYQFDELLNLKYLCLAHNH  507 (719)
Q Consensus       428 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~  507 (719)
                      ++++.++++++.  .+..+.+|+.|++.+| .+++++.  +..+++|++|++++|.++.+.+  +..+++++++++++|.
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~-~i~~l~~--l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCC-CCCcchh--HhcCCCCcEeecCCceeecccc--cccccccccccccccc
Confidence            344444444432  2334455555555555 4444431  4445555555555555444432  3444445555554444


Q ss_pred             CCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCC
Q psy16110        508 LTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTY  587 (719)
Q Consensus       508 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  587 (719)
                      ++.++                          .+.++++|+.++++++....+....       ..+.++.++++++.+..
T Consensus        97 ~~~i~--------------------------~l~~l~~L~~l~l~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~  143 (227)
T d1h6ua2          97 LKNVS--------------------------AIAGLQSIKTLDLTSTQITDVTPLA-------GLSNLQVLYLDLNQITN  143 (227)
T ss_dssp             CSCCG--------------------------GGTTCTTCCEEECTTSCCCCCGGGT-------TCTTCCEEECCSSCCCC
T ss_pred             ccccc--------------------------cccccccccccccccccccccchhc-------cccchhhhhchhhhhch
Confidence            44433                          2444455555555554443322111       12555666666665554


Q ss_pred             cCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCC
Q psy16110        588 LFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFN  667 (719)
Q Consensus       588 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  667 (719)
                      ..  .+..+++|++|++++|.+...++  ++++++|++|++++|+++++++  ++++++|++|++++|+++++++  +.+
T Consensus       144 ~~--~~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~--l~~  215 (227)
T d1h6ua2         144 IS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LAN  215 (227)
T ss_dssp             CG--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred             hh--hhccccccccccccccccccchh--hcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCCCcc--ccc
Confidence            32  25556667777777776665443  5667777777777777776543  5667777777777777776654  667


Q ss_pred             CCCCcEEECC
Q psy16110        668 SSQLQIINLS  677 (719)
Q Consensus       668 l~~L~~L~Ls  677 (719)
                      +++|+.|+++
T Consensus       216 l~~L~~L~ls  225 (227)
T d1h6ua2         216 TSNLFIVTLT  225 (227)
T ss_dssp             CTTCCEEEEE
T ss_pred             CCCCCEEEee
Confidence            7777777775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.2e-22  Score=215.66  Aligned_cols=62  Identities=18%  Similarity=0.213  Sum_probs=34.6

Q ss_pred             cccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccC----cCccCCCccCcEEECCCCcCC
Q psy16110        190 TLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIE----EGILKGCDNLLELRMDHNRFT  255 (719)
Q Consensus       190 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~  255 (719)
                      +|++||+++|++++..    -.+-+..++++++|+|++|.++...    ..++..+++|++|+|++|.|+
T Consensus         3 ~l~~ld~~~~~i~~~~----~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1           3 DIQSLDIQCEELSDAR----WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             EEEEEEEESCCCCHHH----HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             CCCEEEeeCCcCChHH----HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC
Confidence            5677777777776410    0122445667777777777665322    123445566666666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=7.7e-18  Score=158.74  Aligned_cols=176  Identities=22%  Similarity=0.285  Sum_probs=93.9

Q ss_pred             CEEeCCCCccccccCCccCCCCCCCEEEccCCcCCc-ccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccE
Q psy16110        523 TYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTT-FKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKT  601 (719)
Q Consensus       523 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  601 (719)
                      ++++.++++++.++. .+  .+++++|+|++|+++. ++...|.     .+++|++|++++|.+..+.+..|..+++|++
T Consensus        11 ~~v~Cs~~~L~~iP~-~l--p~~l~~L~Ls~N~i~~~~~~~~f~-----~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~   82 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSDGLFG-----RLPHLVKLELKRNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCSCSGG-----GCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CEEEEeCCCcCccCC-CC--CCCCCEEEeCCCCCcccccccccC-----CCceEeeeeccccccccccccccccccccce
Confidence            455666666655422 22  1456666666666643 2233332     2356666666666666665566666666666


Q ss_pred             EEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcC
Q psy16110        602 LKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRL  681 (719)
Q Consensus       602 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  681 (719)
                      |++++|+++.+++.+|.++++|++|+|++|+|+++++.+|..+++|++|+|++|++.......+. ...++.+.+..+.+
T Consensus        83 L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~-~~~l~~~~l~~~~~  161 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAA  161 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGC
T ss_pred             eeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH-hhhhhhhcccCCCe
Confidence            66666666666665566666666666666666666665566666666666666665543321100 12234444445555


Q ss_pred             CCcChHhhcCcccc-EEecCCCceeeeccCCCccccCC
Q psy16110        682 EKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHRCECAQ  718 (719)
Q Consensus       682 ~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~~  718 (719)
                      +...+   ..+..+ .++++.|.+        .|.+++
T Consensus       162 ~c~~p---~~l~~~~l~~L~~n~l--------~C~~~~  188 (192)
T d1w8aa_         162 RCGAP---SKVRDVQIKDLPHSEF--------KCSSEN  188 (192)
T ss_dssp             BBCSS---TTTTTSBGGGSCTTTC--------CCCCC-
T ss_pred             EeCCC---hhhcCCEeeecCHhhC--------cCCCCC
Confidence            43222   223345 556677766        677654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=8.6e-18  Score=159.40  Aligned_cols=167  Identities=21%  Similarity=0.343  Sum_probs=114.0

Q ss_pred             cEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcE
Q psy16110        167 RRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLE  246 (719)
Q Consensus       167 ~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  246 (719)
                      ..+.++.+.++.+...   ..++++++|++++|.+..     +  +.++.+++|++|++++|+++.+++  ++++++|++
T Consensus        21 i~~~l~~~~~~~~~~~---~~l~~l~~L~l~~~~i~~-----l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~   88 (199)
T d2omxa2          21 MKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKS-----I--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD   88 (199)
T ss_dssp             HHHHTTCSSTTSEECH---HHHTTCCEEECTTSCCCC-----C--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             HHHHhCCCCCCCccCH---HHhcCCCEEECCCCCCCC-----c--cccccCCCcCcCccccccccCccc--ccCCccccc
Confidence            3445666666654322   235677777777777764     1  246667788888888887777654  677777888


Q ss_pred             EECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCC
Q psy16110        247 LRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRL  326 (719)
Q Consensus       247 L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  326 (719)
                      |++++|.+..++.  +.++++|+.|+++++.+..+.  .+..+++|+.|++++|.+..++  .+..+++|++|++.+|++
T Consensus        89 L~l~~n~~~~~~~--l~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l  162 (199)
T d2omxa2          89 ILMNNNQIADITP--LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQV  162 (199)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCC
T ss_pred             ccccccccccccc--ccccccccccccccccccccc--ccchhhhhHHhhhhhhhhcccc--cccccccccccccccccc
Confidence            8888777777763  667777777777777776653  3666777777777777776553  466777777777777777


Q ss_pred             CCcCCCccccccccCCCCCCEEeCCCCCCCcc
Q psy16110        327 NKLNSDTFQGGAFNGLAKIHILNLGYNRLNKL  358 (719)
Q Consensus       327 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~i  358 (719)
                      ++++       .+.++++|++|++++|+++++
T Consensus       163 ~~l~-------~l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         163 TDLK-------PLANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             CCCG-------GGTTCTTCCEEECCSSCCCCC
T ss_pred             cCCc-------cccCCCCCCEEECCCCCCCCC
Confidence            6654       255667777777777776554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=4.1e-17  Score=154.65  Aligned_cols=149  Identities=24%  Similarity=0.370  Sum_probs=69.6

Q ss_pred             CCCccEEEccCCcCCCCChhhhcCCCCCCEEeCCCCccccccCCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCC
Q psy16110        495 LLNLKYLCLAHNHLTEIPEMMFKNLLNLTYLDLSNNNIVNLRVGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSS  574 (719)
Q Consensus       495 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~  574 (719)
                      +.++++|++++|.++++..  ++.+++|++|++++|+++++.+  +.++++|++|++++|.+..+++  +     ..++.
T Consensus        39 l~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~--l-----~~l~~  107 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--L-----ANLTN  107 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--G-----TTCTT
T ss_pred             hcCCCEEECCCCCCCCccc--cccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc--c-----ccccc
Confidence            3455555555555555432  3445555555555555555432  4455555555555555443321  1     12344


Q ss_pred             CcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCC
Q psy16110        575 LEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNN  654 (719)
Q Consensus       575 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  654 (719)
                      |+.|++++|.+....  .+..+++|+.|++++|++..++  .+..+++|+.|++++|+++++++  ++++++|++|++++
T Consensus       108 L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~  181 (199)
T d2omxa2         108 LTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS  181 (199)
T ss_dssp             CSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             ccccccccccccccc--ccchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCcc--ccCCCCCCEEECCC
Confidence            555555544444331  2344444444444444444332  13444444444444444444332  34444444444444


Q ss_pred             CcCCCC
Q psy16110        655 NNIDAI  660 (719)
Q Consensus       655 N~l~~~  660 (719)
                      |+++++
T Consensus       182 N~i~~i  187 (199)
T d2omxa2         182 NKVSDI  187 (199)
T ss_dssp             SCCCCC
T ss_pred             CCCCCC
Confidence            444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=4.2e-17  Score=155.92  Aligned_cols=164  Identities=24%  Similarity=0.369  Sum_probs=101.1

Q ss_pred             hccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCC
Q psy16110        188 RDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRA  267 (719)
Q Consensus       188 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~  267 (719)
                      +.+|++|++++|.+.+.       ..+..+++|++|+|++|+++.+++  ++++++|++|++++|+++.++.  +.++++
T Consensus        45 L~~L~~L~l~~~~i~~l-------~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~~--l~~l~~  113 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV-------QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKK  113 (210)
T ss_dssp             HHTCCEEECTTSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTT
T ss_pred             hcCccEEECcCCCCCCc-------hhHhhCCCCCEEeCCCccccCccc--cccCcccccccccccccccccc--cccccc
Confidence            45667777777666541       135566777777777777666553  4566777777777777766653  566677


Q ss_pred             CcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCE
Q psy16110        268 LRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHI  347 (719)
Q Consensus       268 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~  347 (719)
                      |+.|++++|.+..+.  .+..+++++.+++++|.+++..  .+..+++|+++++++|+++++.+       +.++++|++
T Consensus       114 L~~L~l~~~~~~~~~--~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~~-------l~~l~~L~~  182 (210)
T d1h6ta2         114 LKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-------LAGLTKLQN  182 (210)
T ss_dssp             CCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-------GTTCTTCCE
T ss_pred             ccccccccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-------ccCCCCCCE
Confidence            777777776665543  3566666677777766665543  34556666677776666665432       445666666


Q ss_pred             EeCCCCCCCccccccccCcccccccccccCCCccEEECC
Q psy16110        348 LNLGYNRLNKLNSDTFQGTHITIFSFFQDFQKLKSLDLN  386 (719)
Q Consensus       348 L~L~~n~l~~i~~~~f~~~~~~~~~~l~~~~~L~~L~L~  386 (719)
                      |++++|++++++             .+..+++|++|+++
T Consensus       183 L~Ls~N~i~~l~-------------~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         183 LYLSKNHISDLR-------------ALAGLKNLDVLELF  208 (210)
T ss_dssp             EECCSSCCCBCG-------------GGTTCTTCSEEEEE
T ss_pred             EECCCCCCCCCh-------------hhcCCCCCCEEEcc
Confidence            666666665432             13345566666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=5.2e-17  Score=155.26  Aligned_cols=163  Identities=25%  Similarity=0.357  Sum_probs=142.8

Q ss_pred             cccEEEcCCCCccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCccC
Q psy16110        165 PIRRLDFSGNALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDNL  244 (719)
Q Consensus       165 ~L~~L~Ls~n~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  244 (719)
                      ++++|++++|.++.++.  + ..+++|++|+|++|.+++.       ..++++++|++|++++|+++.++.  +.++++|
T Consensus        47 ~L~~L~l~~~~i~~l~~--l-~~l~~L~~L~L~~n~i~~l-------~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L  114 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG--I-QYLPNVTKLFLNGNKLTDI-------KPLANLKNLGWLFLDENKVKDLSS--LKDLKKL  114 (210)
T ss_dssp             TCCEEECTTSCCCCCTT--G-GGCTTCCEEECCSSCCCCC-------GGGTTCTTCCEEECCSSCCCCGGG--GTTCTTC
T ss_pred             CccEEECcCCCCCCchh--H-hhCCCCCEEeCCCccccCc-------cccccCcccccccccccccccccc--ccccccc
Confidence            59999999999998874  3 3679999999999999862       247889999999999999998863  8899999


Q ss_pred             cEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCcccccCcccCcEEEcCCC
Q psy16110        245 LELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYN  324 (719)
Q Consensus       245 ~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  324 (719)
                      +.|++++|.+..++.  +..+++++.+++++|.++...  .+..+++|+++++++|+++++.+  +.++++|++|++++|
T Consensus       115 ~~L~l~~~~~~~~~~--l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         115 KSLSLEHNGISDING--LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  188 (210)
T ss_dssp             CEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             ccccccccccccccc--ccccccccccccccccccccc--ccccccccccccccccccccccc--ccCCCCCCEEECCCC
Confidence            999999999988874  788999999999999998764  47789999999999999998754  889999999999999


Q ss_pred             CCCCcCCCccccccccCCCCCCEEeCCC
Q psy16110        325 RLNKLNSDTFQGGAFNGLAKIHILNLGY  352 (719)
Q Consensus       325 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~  352 (719)
                      ++++++       .+..+++|++|+|++
T Consensus       189 ~i~~l~-------~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         189 HISDLR-------ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCCBCG-------GGTTCTTCSEEEEEE
T ss_pred             CCCCCh-------hhcCCCCCCEEEccC
Confidence            998875       377899999999863

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.4e-15  Score=136.55  Aligned_cols=132  Identities=19%  Similarity=0.225  Sum_probs=86.3

Q ss_pred             cccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCcc
Q psy16110        213 EFHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWL  292 (719)
Q Consensus       213 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  292 (719)
                      .|.++.++++|+|++|+|+.++ ..+..+++|++|++++|.|++++.  +..+++|++|++++|.++.+++..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCcccccccccc
Confidence            3556667777777777777774 345667777777777777777653  6677777777777777777766666667777


Q ss_pred             CEEEccCCCCcccCc-ccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEe
Q psy16110        293 ERIILRGNRLTTIEG-GAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILN  349 (719)
Q Consensus       293 ~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~  349 (719)
                      ++|++++|+++.+.. ..+..+++|++|++++|+++..+..  ....+..+++|+.||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~--r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY--RLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTH--HHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccch--HHHHHHHCCCcCeeC
Confidence            777777777766543 4566677777777777766554421  001244556666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=1.3e-14  Score=125.11  Aligned_cols=115  Identities=27%  Similarity=0.381  Sum_probs=89.0

Q ss_pred             cEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeCCCC
Q psy16110        576 EELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNLNNN  655 (719)
Q Consensus       576 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N  655 (719)
                      ++|||++|+++.. + .++.+++|++|++++|+++.+|+. ++.+++|++|++++|.+++++.  +..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccccccccCc--cccccccCeEECCCC
Confidence            4688888888766 3 477888888888888888888754 6788888888888888887753  788888888888888


Q ss_pred             cCCCCCc-ccCCCCCCCcEEECCCCcCCCc---ChHhhcCcccc
Q psy16110        656 NIDAISE-TCFFNSSQLQIINLSFNRLEKL---PERLFNTFLYT  695 (719)
Q Consensus       656 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i---~~~~~~~l~~L  695 (719)
                      ++++++. ..+..+++|++|++++|+++.+   +..+...+++|
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L  119 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV  119 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCc
Confidence            8887753 4577788888888888887643   45555556666

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.7e-15  Score=134.54  Aligned_cols=128  Identities=21%  Similarity=0.292  Sum_probs=74.5

Q ss_pred             cCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCcCcCcccCCCCccEEEcCCCCCCCcChhhhcC
Q psy16110        540 LYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFNKFNYFPKELILG  619 (719)
Q Consensus       540 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  619 (719)
                      +.+..++++|+|++|+++.++. .+.     .+++|+.||+++|+++.+  ..|..+++|++|++++|+++.+++..+..
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~-~~~-----~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~   85 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIEN-LGA-----TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA   85 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGG-----GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             ccCcCcCcEEECCCCCCCccCc-ccc-----ccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccc
Confidence            4455566777777776666542 222     235666666666666655  23566666666666666666666555555


Q ss_pred             CCCCCEEECCCCCCcccCc-ccCCCCCCCCEEeCCCCcCCCCCc---ccCCCCCCCcEEE
Q psy16110        620 LSYLQEIDLSNNQLKTIDD-YDYGYLPRLRKLNLNNNNIDAISE---TCFFNSSQLQIIN  675 (719)
Q Consensus       620 l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~  675 (719)
                      +++|++|++++|++..+.. ..+..+++|++|++++|+++..+.   ..+..+++|++||
T Consensus        86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            6666666666666655432 235556666666666666655442   2344455666555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=1.7e-14  Score=124.30  Aligned_cols=85  Identities=24%  Similarity=0.368  Sum_probs=33.6

Q ss_pred             CCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccCEEEccCCCCcccCc-ccccCcccCc
Q psy16110        239 KGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLERIILRGNRLTTIEG-GAFNGLAKIH  317 (719)
Q Consensus       239 ~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~  317 (719)
                      .++++|++|++++|.++++|+ .++.+++|++|++++|.|+.++  .+..+++|++|++++|+++.++. ..+..+++|+
T Consensus        17 ~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV   93 (124)
T ss_dssp             GGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             ccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccC--ccccccccCeEECCCCccCCCCCchhhcCCCCCC
Confidence            334444444444444444432 2333444444444444443332  13334444444444444433321 2333344444


Q ss_pred             EEEcCCCCC
Q psy16110        318 ILNLGYNRL  326 (719)
Q Consensus       318 ~L~L~~n~l  326 (719)
                      +|++++|++
T Consensus        94 ~L~l~~N~i  102 (124)
T d1dcea3          94 LLNLQGNSL  102 (124)
T ss_dssp             EEECTTSGG
T ss_pred             EEECCCCcC
Confidence            444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.6e-14  Score=128.64  Aligned_cols=107  Identities=20%  Similarity=0.229  Sum_probs=57.7

Q ss_pred             CCcEEECcCCCCCCcCcCcccCCCCccEEEcCCC-CCCCcChhhhcCCCCCCEEECCCCCCcccCcccCCCCCCCCEEeC
Q psy16110        574 SLEELNLNNNELTYLFPSSFTIHSKLKTLKLAFN-KFNYFPKELILGLSYLQEIDLSNNQLKTIDDYDYGYLPRLRKLNL  652 (719)
Q Consensus       574 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  652 (719)
                      ..+.++.+++.+... |..+..+++|++|++++| .++.+++.+|.++++|+.|++++|+|+.+++.+|.++++|++|+|
T Consensus         9 ~~~~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCccC-cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            344566666555554 444555555555555443 355555555555555555555555555555555555555555555


Q ss_pred             CCCcCCCCCcccCCCCCCCcEEECCCCcCC
Q psy16110        653 NNNNIDAISETCFFNSSQLQIINLSFNRLE  682 (719)
Q Consensus       653 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  682 (719)
                      ++|+|+.+++..|... +|++|+|++|++.
T Consensus        88 s~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             cCCCCcccChhhhccc-cccccccCCCccc
Confidence            5555555555444432 4555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=1.5e-14  Score=149.53  Aligned_cols=242  Identities=16%  Similarity=0.156  Sum_probs=137.4

Q ss_pred             ccccCCCcCcEEeCcCCCCCCCCCC----CCCCCCCCccEEEcCCCCCCCCC----------chhhcCCCCccEEEccCC
Q psy16110        441 TAFTNVPTLLHLNLSRNAHLSSLPV----GGFDPLKKLEVLDLAATGLKSIP----------QYQFDELLNLKYLCLAHN  506 (719)
Q Consensus       441 ~~~~~l~~L~~L~L~~n~~l~~l~~----~~~~~l~~L~~L~ls~n~l~~~~----------~~~~~~~~~L~~L~L~~n  506 (719)
                      ..+....+|+.|+|++| .++.-..    ..+...++|+.++++++......          ...+..+++|+.|++++|
T Consensus        25 ~~L~~~~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             HHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHhhCCCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            34566788899999888 4433211    12455678888888877554322          123455678888888888


Q ss_pred             cCCCCChh----hhcCCCCCCEEeCCCCccccccCCc-------------cCCCCCCCEEEccCCcCCcccCCcCCCCCC
Q psy16110        507 HLTEIPEM----MFKNLLNLTYLDLSNNNIVNLRVGS-------------LYGLPSMKRLDLSFNKLTTFKGDYFNTKSK  569 (719)
Q Consensus       507 ~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~-------------l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  569 (719)
                      .+......    .+..+++|++|++++|.++......             ....+.|+.+.+++|.++......+.. .+
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~-~l  182 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK-TF  182 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH-HH
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccc-hh
Confidence            77654332    3345678888888888765421111             124556777777777665332221110 01


Q ss_pred             CCCCCCcEEECcCCCCCCc-----CcCcccCCCCccEEEcCCCCCCCcC----hhhhcCCCCCCEEECCCCCCcccCccc
Q psy16110        570 PNTSSLEELNLNNNELTYL-----FPSSFTIHSKLKTLKLAFNKFNYFP----KELILGLSYLQEIDLSNNQLKTIDDYD  640 (719)
Q Consensus       570 ~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~  640 (719)
                      ..++.|++|++++|+++..     ....+..+++|++|++++|.++...    ...+..++.|++|+|++|.+++.....
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            1235677777777776542     2344556667777777777665321    233456667777777777665432111


Q ss_pred             ----CC--CCCCCCEEeCCCCcCCCCCc----ccC-CCCCCCcEEECCCCcCCCc
Q psy16110        641 ----YG--YLPRLRKLNLNNNNIDAISE----TCF-FNSSQLQIINLSFNRLEKL  684 (719)
Q Consensus       641 ----l~--~l~~L~~L~Ls~N~l~~~~~----~~~-~~l~~L~~L~Ls~N~l~~i  684 (719)
                          +.  ..+.|++|++++|+|+....    ..+ .++++|++|+|++|+++.-
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence                11  23456677777776654211    112 1345666777777766543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.1e-14  Score=145.86  Aligned_cols=39  Identities=26%  Similarity=0.423  Sum_probs=15.3

Q ss_pred             hcCCCCCCEEECCCC-CCcccCcccCCCCCCCCEEeCCCC
Q psy16110        617 ILGLSYLQEIDLSNN-QLKTIDDYDYGYLPRLRKLNLNNN  655 (719)
Q Consensus       617 l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~N  655 (719)
                      +..+++|++|++++| .+++.....+.++++|+.|+++++
T Consensus       196 l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         196 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            333444444444442 233222222334444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=1.6e-14  Score=149.16  Aligned_cols=191  Identities=18%  Similarity=0.119  Sum_probs=114.9

Q ss_pred             CCCccEEEcCCCCCCCCCc----hhhcCCCCccEEEccCCcCCCCChh-------------hhcCCCCCCEEeCCCCccc
Q psy16110        471 LKKLEVLDLAATGLKSIPQ----YQFDELLNLKYLCLAHNHLTEIPEM-------------MFKNLLNLTYLDLSNNNIV  533 (719)
Q Consensus       471 l~~L~~L~ls~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~Ls~n~i~  533 (719)
                      +++|+.|++++|.+.....    ..+..+++|+.|++++|.+......             .....+.|+.+++++|.++
T Consensus        92 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1          92 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccc
Confidence            4556666666665544322    1233456677777766655321100             1234567778888777765


Q ss_pred             ccc----CCccCCCCCCCEEEccCCcCCcccCCcCCCCCCCCCCCCcEEECcCCCCCCc----CcCcccCCCCccEEEcC
Q psy16110        534 NLR----VGSLYGLPSMKRLDLSFNKLTTFKGDYFNTKSKPNTSSLEELNLNNNELTYL----FPSSFTIHSKLKTLKLA  605 (719)
Q Consensus       534 ~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~  605 (719)
                      ...    ...+..++.|++|++++|.+.......+-...+..+++|++|++++|.++..    +...+..+++|++|+++
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence            422    2234456778888888887664211110011123357788888888887643    23456778889999999


Q ss_pred             CCCCCCcChhh----hc--CCCCCCEEECCCCCCcccCc----ccC-CCCCCCCEEeCCCCcCCCCC
Q psy16110        606 FNKFNYFPKEL----IL--GLSYLQEIDLSNNQLKTIDD----YDY-GYLPRLRKLNLNNNNIDAIS  661 (719)
Q Consensus       606 ~n~l~~~~~~~----l~--~l~~L~~L~Ls~n~l~~~~~----~~l-~~l~~L~~L~Ls~N~l~~~~  661 (719)
                      +|.++......    +.  ..+.|++|++++|+++....    ..+ .+++.|++|++++|++....
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence            99887643322    22  24679999999998875221    122 25678999999999987643

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.1e-14  Score=139.78  Aligned_cols=59  Identities=15%  Similarity=0.050  Sum_probs=31.2

Q ss_pred             CCCcEEECcCC-CCCCcCcCcccCCCCccEEEcCCC-CCCCcChhhhcCCCCCCEEECCCC
Q psy16110        573 SSLEELNLNNN-ELTYLFPSSFTIHSKLKTLKLAFN-KFNYFPKELILGLSYLQEIDLSNN  631 (719)
Q Consensus       573 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n  631 (719)
                      ++|++|++++| .+++.....+..+++|++|++++| .++......+..+++|+.|+++++
T Consensus       175 ~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            45555555554 244444444555566666666654 344333334555666666666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.1e-12  Score=115.90  Aligned_cols=111  Identities=23%  Similarity=0.320  Sum_probs=84.9

Q ss_pred             CCccEEEcCCCCCCCcChhhhcCCCCCCEEECCCC-CCcccCcccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEE
Q psy16110        597 SKLKTLKLAFNKFNYFPKELILGLSYLQEIDLSNN-QLKTIDDYDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIIN  675 (719)
Q Consensus       597 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  675 (719)
                      ...+.++.+++.+..++.. +..+++|++|++++| .++.+++..|.++++|+.|++++|+|+.+.+..|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCccCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            3455677777777776654 667778888888665 47777777788888888888888888888777788888888888


Q ss_pred             CCCCcCCCcChHhhcCcccc-EEecCCCceeeeccCCCccccC
Q psy16110        676 LSFNRLEKLPERLFNTFLYT-NYDMAPNLVFQSHLSGHRCECA  717 (719)
Q Consensus       676 Ls~N~l~~i~~~~~~~l~~L-~L~l~~N~l~~~~~~~~~C~c~  717 (719)
                      |++|+|+.+|.++|... .| +|+|++||+        +|+|+
T Consensus        87 Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~--------~C~C~  120 (156)
T d2ifga3          87 LSFNALESLSWKTVQGL-SLQELVLSGNPL--------HCSCA  120 (156)
T ss_dssp             CCSSCCSCCCSTTTCSC-CCCEEECCSSCC--------CCCGG
T ss_pred             ccCCCCcccChhhhccc-cccccccCCCcc--------cCCch
Confidence            88888888888777655 57 888888888        77775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=1.7e-14  Score=135.64  Aligned_cols=131  Identities=24%  Similarity=0.262  Sum_probs=64.4

Q ss_pred             ccCCCCCCEEECcCCCCcccCcCccCCCccCcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCCCcccCCCccC
Q psy16110        214 FHGLVNLRILDLSDNQIKAIEEGILKGCDNLLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKADSFLSQRWLE  293 (719)
Q Consensus       214 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  293 (719)
                      +..+++|++|+|++|+|+.++  .+.++++|++|++++|.++.++. ....+++|++|++++|.++.+.  .+..+++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~~N~i~~l~--~~~~l~~L~  118 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEEECSEEECCCHH--HHHHHHHSS
T ss_pred             HhcccccceeECcccCCCCcc--cccCCccccChhhcccccccccc-cccccccccccccccccccccc--ccccccccc
Confidence            444445555555555554443  14445555555555555554443 2223344555555555555442  244555566


Q ss_pred             EEEccCCCCcccCc-ccccCcccCcEEEcCCCCCCCcCCCcccc-----ccccCCCCCCEEe
Q psy16110        294 RIILRGNRLTTIEG-GAFNGLAKIHILNLGYNRLNKLNSDTFQG-----GAFNGLAKIHILN  349 (719)
Q Consensus       294 ~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----~~l~~l~~L~~L~  349 (719)
                      +|++++|+++.+.. ..+..+++|++|++++|++..........     ..+..+++|+.||
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            66666665554432 34555666666666666554433221110     0134566777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=3.1e-14  Score=133.80  Aligned_cols=128  Identities=29%  Similarity=0.424  Sum_probs=69.2

Q ss_pred             ccEEEcCCC--CccccCcccccchhccccEEEcCCCcCCCcCCCCCCcccccCCCCCCEEECcCCCCcccCcCccCCCcc
Q psy16110        166 IRRLDFSGN--ALRRLSDKLFSPHRDTLQELRLADNLFGDSLNPIFSTSEFHGLVNLRILDLSDNQIKAIEEGILKGCDN  243 (719)
Q Consensus       166 L~~L~Ls~n--~i~~l~~~~f~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  243 (719)
                      .+.+++++.  .++.++..+  ..+++|++|+|++|.|+.     +  +.+.++++|++|+|++|+|+.++. .+..+++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl--~~L~~L~~L~Ls~n~I~~-----i--~~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~   94 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATL--STLKACKHLALSTNNIEK-----I--SSLSGMENLRILSLGRNLIKKIEN-LDAVADT   94 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHH--HHTTTCCEEECSEEEESC-----C--CCHHHHTTCCEEECCEEEECSCSS-HHHHHHH
T ss_pred             cceeeeecccCchhhhhhHH--hcccccceeECcccCCCC-----c--ccccCCccccChhhcccccccccc-ccccccc
Confidence            444555443  344444333  245566666666666553     1  135556666666666666655542 2333445


Q ss_pred             CcEEECCCCcCCcCCCCCCCCCCCCcEEEcCCCcCcccCC-CcccCCCccCEEEccCCCCccc
Q psy16110        244 LLELRMDHNRFTSIPSVSLNGPRALRILSMAYNRIGTLKA-DSFLSQRWLERIILRGNRLTTI  305 (719)
Q Consensus       244 L~~L~L~~n~l~~i~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~  305 (719)
                      |++|++++|+++.++.  +..+++|++|++++|.|+.+.. ..+..+++|++|++++|++...
T Consensus        95 L~~L~l~~N~i~~l~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          95 LEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             CCEEECSEEECCCHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccccccccccccc--ccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            6666666666665542  4555666666666666655532 3455666666666666655433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1e-09  Score=98.75  Aligned_cols=39  Identities=26%  Similarity=0.091  Sum_probs=15.4

Q ss_pred             CCccCEEEccCCCCcccCcccccCcccCcEEEcCCCCCC
Q psy16110        289 QRWLERIILRGNRLTTIEGGAFNGLAKIHILNLGYNRLN  327 (719)
Q Consensus       289 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  327 (719)
                      +++|+.|++++|.|+.+....+....+|++|++++|++.
T Consensus        90 l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          90 APNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             STTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             CCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            344444444444444333322222233444444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1e-08  Score=91.97  Aligned_cols=64  Identities=30%  Similarity=0.340  Sum_probs=28.7

Q ss_pred             CCCCCCEEECCCCCCcccCc--ccCCCCCCCCEEeCCCCcCCCCCcccCCCCCCCcEEECCCCcCC
Q psy16110        619 GLSYLQEIDLSNNQLKTIDD--YDYGYLPRLRKLNLNNNNIDAISETCFFNSSQLQIINLSFNRLE  682 (719)
Q Consensus       619 ~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  682 (719)
                      .+++|++|++++|+|+.+.+  ..++.+++|+.|++++|+|+.+.+-.+.....|+.|++++|++.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            34445555555555544322  12334455555555555555443322222334555555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.86  E-value=3e-06  Score=75.77  Aligned_cols=107  Identities=16%  Similarity=0.152  Sum_probs=57.3

Q ss_pred             CCCcEEECcCC-CCCCc----CcCcccCCCCccEEEcCCCCCCCc----ChhhhcCCCCCCEEECCCCCCcccC----cc
Q psy16110        573 SSLEELNLNNN-ELTYL----FPSSFTIHSKLKTLKLAFNKFNYF----PKELILGLSYLQEIDLSNNQLKTID----DY  639 (719)
Q Consensus       573 ~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~  639 (719)
                      +.|++|+|+++ .++..    +..++...+.|++|+|++|.+..-    -.+++...+.|++|+|++|.++...    ..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            55666666543 33322    122344556666666666665531    1233445566777777777666321    22


Q ss_pred             cCCCCCCCCEEeCCCCcCCCCCc-------ccCCCCCCCcEEECCCC
Q psy16110        640 DYGYLPRLRKLNLNNNNIDAISE-------TCFFNSSQLQIINLSFN  679 (719)
Q Consensus       640 ~l~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~Ls~N  679 (719)
                      .+...+.|++|++++|++..+..       ..+...++|+.|+++.+
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            35556667777777666554422       22334567777777655

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.77  E-value=1.1e-05  Score=71.91  Aligned_cols=111  Identities=12%  Similarity=0.046  Sum_probs=82.7

Q ss_pred             cCCCCccEEEcCCC-CCCCc----ChhhhcCCCCCCEEECCCCCCcccCc----ccCCCCCCCCEEeCCCCcCCCCC---
Q psy16110        594 TIHSKLKTLKLAFN-KFNYF----PKELILGLSYLQEIDLSNNQLKTIDD----YDYGYLPRLRKLNLNNNNIDAIS---  661 (719)
Q Consensus       594 ~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~Ls~N~l~~~~---  661 (719)
                      ...++|++|+|+++ .++.-    -..++...+.|++|+|++|.+.....    ..+...+.|++|+|++|+++...   
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45689999999975 46532    12356778999999999999984322    23455689999999999998642   


Q ss_pred             -cccCCCCCCCcEEECCCCcCCCcCh-------HhhcCcccc-EEecCCCce
Q psy16110        662 -ETCFFNSSQLQIINLSFNRLEKLPE-------RLFNTFLYT-NYDMAPNLV  704 (719)
Q Consensus       662 -~~~~~~l~~L~~L~Ls~N~l~~i~~-------~~~~~l~~L-~L~l~~N~l  704 (719)
                       ...+...++|++|++++|++..+..       .++...+.| .++++.+..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence             3357788999999999998776542       345567889 999987754

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.12  E-value=5.2e-05  Score=67.33  Aligned_cols=109  Identities=15%  Similarity=0.163  Sum_probs=56.7

Q ss_pred             CCCcEEECcC-CCCCCc----CcCcccCCCCccEEEcCCCCCCCcC----hhhhcCCCCCCEEECCCCCCcccC----cc
Q psy16110        573 SSLEELNLNN-NELTYL----FPSSFTIHSKLKTLKLAFNKFNYFP----KELILGLSYLQEIDLSNNQLKTID----DY  639 (719)
Q Consensus       573 ~~L~~L~Ls~-n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~----~~  639 (719)
                      +.|++|++++ +.++..    +..++...++|++|++++|.++...    ...+...++++.+++++|.++...    ..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4555555554 234322    1223445566666666666655422    123445567777777777665321    12


Q ss_pred             cCCCCCCCCEEeC--CCCcCCCC----CcccCCCCCCCcEEECCCCcC
Q psy16110        640 DYGYLPRLRKLNL--NNNNIDAI----SETCFFNSSQLQIINLSFNRL  681 (719)
Q Consensus       640 ~l~~l~~L~~L~L--s~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l  681 (719)
                      .+...++|+.++|  ++|++...    ....+...++|+.|+++.+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            3455666765444  34555432    222344567777777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.88  E-value=8.9e-05  Score=65.76  Aligned_cols=93  Identities=11%  Similarity=0.117  Sum_probs=38.3

Q ss_pred             CCCccCEEEccCCCCcccCc----ccccCcccCcEEEcCCCCCCCcCCCccccccccCCCCCCEEeCC--CCCCCccccc
Q psy16110        288 SQRWLERIILRGNRLTTIEG----GAFNGLAKIHILNLGYNRLNKLNSDTFQGGAFNGLAKIHILNLG--YNRLNKLNSD  361 (719)
Q Consensus       288 ~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~L~--~n~l~~i~~~  361 (719)
                      ..++|++|++++|.++....    ..+...++++.+++++|.++......+.. .+...++|+.++|+  +|.+..... 
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~-~l~~~~~L~~l~L~l~~n~i~~~~~-  121 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE-ALQSNTSLIELRIDNQSQPLGNNVE-  121 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHH-
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH-HHHhCccccEEeeccCCCcCcHHHH-
Confidence            34445555555554432221    12233445555555555544332222211 23444555544332  333322111 


Q ss_pred             cccCcccccccccccCCCccEEECCCC
Q psy16110        362 TFQGTHITIFSFFQDFQKLKSLDLNGN  388 (719)
Q Consensus       362 ~f~~~~~~~~~~l~~~~~L~~L~L~~n  388 (719)
                            ..+...+...++|++|+++.+
T Consensus       122 ------~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         122 ------MEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             ------HHHHHHHHHCSSCCEEECCCS
T ss_pred             ------HHHHHHHHhCCCcCEEeCcCC
Confidence                  112233445556666665544