Psyllid ID: psy16118
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1070 | 2.2.26 [Sep-21-2011] | |||||||
| Q14683 | 1233 | Structural maintenance of | yes | N/A | 0.874 | 0.759 | 0.372 | 1e-175 | |
| O97593 | 1233 | Structural maintenance of | yes | N/A | 0.874 | 0.759 | 0.372 | 1e-175 | |
| Q9CU62 | 1233 | Structural maintenance of | yes | N/A | 0.874 | 0.759 | 0.372 | 1e-175 | |
| Q9Z1M9 | 1233 | Structural maintenance of | yes | N/A | 0.874 | 0.759 | 0.371 | 1e-174 | |
| O93308 | 1232 | Structural maintenance of | N/A | N/A | 0.757 | 0.657 | 0.391 | 1e-163 | |
| Q8NDV3 | 1235 | Structural maintenance of | no | N/A | 0.873 | 0.757 | 0.321 | 1e-146 | |
| Q920F6 | 1248 | Structural maintenance of | no | N/A | 0.752 | 0.645 | 0.337 | 1e-139 | |
| Q6Q1P4 | 1218 | Structural maintenance of | yes | N/A | 0.885 | 0.777 | 0.269 | 3e-92 | |
| O94383 | 1228 | Structural maintenance of | yes | N/A | 0.730 | 0.636 | 0.274 | 1e-67 | |
| P32908 | 1225 | Structural maintenance of | yes | N/A | 0.7 | 0.611 | 0.242 | 8e-49 |
| >sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosomes protein 1A OS=Homo sapiens GN=SMC1A PE=1 SV=2 | Back alignment and function desciption |
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Score = 617 bits (1592), Expect = e-175, Method: Compositional matrix adjust.
Identities = 427/1146 (37%), Positives = 640/1146 (55%), Gaps = 210/1146 (18%)
Query: 37 SGALKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKE 96
SG L +Y++ K EM++AEE+T +Y +KK + AERKEAK EK+EA++YQR+++E+V +
Sbjct: 161 SGELAQEYDKRKKEMVKAEEDTQFNYHRKKNIAAERKEAKQEKEEADRYQRLKDEVVRAQ 220
Query: 97 VEHQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAKV 156
V+ QLFKLYHNE +I++L EL K E+EK ++R +K E+ L+EKKKE G + RE ++
Sbjct: 221 VQLQLFKLYHNEVEIEKLNKELASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQI 280
Query: 157 DQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQL 216
++EI+E D E+N+KRP IK+KE SH KKL +AKKSL ++ + D+ +LE ++
Sbjct: 281 EKEIKEKDSELNQKRPQYIKAKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEM 340
Query: 217 ADVRKRKAEYERQSI-----PGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAK 271
V K + E+E + GRD+ LE Q +K R+ K A+
Sbjct: 341 LSVEKARQEFEERMEEESQSQGRDLTLEENQ-----------VKKYHRLKEEASKRAATL 389
Query: 272 KSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAE 331
+E ++ ++D DLE ++K E E A++ + E
Sbjct: 390 AQELEKFNRDQKADQDRLDLE------ERKKVETE-------------AKIKQKLREIEE 430
Query: 332 ATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDH 391
KR K L++ T +++ +Q KL+ EL ++V E A++RID
Sbjct: 431 NQKRIEK-LEEYITTSKQSLEEQKKLEGELTEEV-------------EMAKRRID----- 471
Query: 392 IRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAKTDKHEDTRRKKKQ 451
E+ KEL QV+E+LGDA+ D+ E +R+++K
Sbjct: 472 ------------------------------EINKELNQVMEQLGDARIDRQESSRQQRKA 501
Query: 452 ELVENFKKAYSG-VYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLK 510
E++E+ K+ Y G VY R+I++C P K+Y +A+TKVLGK M+AI+VDSEKT R CIQY+K
Sbjct: 502 EIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIK 561
Query: 511 DHQLDPETFLPIDYLQTKPLKERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALV 570
+ + +PETFLP+DYL+ KP E+LR + K KL+ DV++Y+P IK+ + +A NALV
Sbjct: 562 EQRGEPETFLPLDYLEVKPTDEKLREL---KGAKLVIDVIRYEPPHIKKALQYACGNALV 618
Query: 571 CETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGGSLDLARKAKRWDDKEMGNLKA 630
C+ EDA ++A+ R+ VALDGT +QKSG++SGG+ DL KA+RWD+K + LK
Sbjct: 619 CDNVEDARRIAFG--GHQRHKTVALDGTLFQKSGVISGGASDLKAKARRWDEKAVDKLKE 676
Query: 631 QKEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLNYSRQDLQNTKS--------QIAK 682
+KE+L+EEL+E MK RKE+EL VQS GL++RL YS+ DL+ TK+ + +K
Sbjct: 677 KKERLTEELKEQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLEQTKTRHLALNLQEKSK 736
Query: 683 LEAEIDALNARADATEPKIKAIEASMTARGDTISRKKEEMNSVEDIVFRDFCKSIGVSTI 742
LE+E+ P+I I+ + +R + KE+MN VED VF +FC+ IGV I
Sbjct: 737 LESELANFG-------PRINDIKRIIQSREREMKDLKEKMNQVEDEVFEEFCREIGVRNI 789
Query: 743 RQYEEAELRSQQE-----------RQKICQDKDTKKN--------VARWERAVSDDEEEL 783
R++EE +++ Q E + ++ D +KN V WE+ V DE E+
Sbjct: 790 REFEEEKVKRQNEIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEI 849
Query: 784 ARAQGAEEKLAGEMRAEADKLENMRATRLTKKQAVDAMDEEIGKARREVGSIAKDIQAAQ 843
+ + E++ + +L++++ L KK V+ + E+ + R+++G K++ Q
Sbjct: 850 EKLKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQ 909
Query: 844 KSCVNLESKLEMKKSERHDILMNCKMNDIVLPM------------------------LRV 879
K +E+KLE K+S+RH++L CKM DI LP+ R+
Sbjct: 910 KEVTAIETKLEQKRSDRHNLLQACKMQDIKLPLSKGTMDDISQEEGSSQGEDSVSGSQRI 969
Query: 880 QKY----------------DRKLAKSIQEMTSRLQTIQ--------------APNLRAME 909
D K A++ +E+ + T+Q APN++AME
Sbjct: 970 SSIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKLNEQQSVLQRIAAPNMKAME 1029
Query: 910 KLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVSNEID---GAGS 966
KLE ++ +T++EFE ARKRAKKAK F++IKKER+D+F CFE V+ ID A S
Sbjct: 1030 KLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALS 1089
Query: 967 ESVLPRPFLGPENPEEPLTYRVSTTIVS---------------------------HRYHP 999
+ + FLGPENPEEP ++ V+ H Y P
Sbjct: 1090 RNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSYKP 1149
Query: 1000 APFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICP--GS 1057
APFFVLDEIDAALDNTNIGKVA+YI ++ + Q IVISLKEEF++ A+SL+G+ P G
Sbjct: 1150 APFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQGD 1209
Query: 1058 VTISSI 1063
IS +
Sbjct: 1210 CVISKV 1215
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Involved in chromosome cohesion during cell cycle and in DNA repair. Central component of cohesin complex. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis. Involved in DNA repair via its interaction with BRCA1 and its related phosphorylation by ATM, or via its phosphorylation by ATR. Works as a downstream effector both in the ATM/NBS1 branch and in the ATR/MSH2 branch of S-phase checkpoint. Homo sapiens (taxid: 9606) |
| >sp|O97593|SMC1A_BOVIN Structural maintenance of chromosomes protein 1A OS=Bos taurus GN=SMC1A PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosomes protein 1A OS=Mus musculus GN=Smc1a PE=1 SV=4 | Back alignment and function description |
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| >sp|Q9Z1M9|SMC1A_RAT Structural maintenance of chromosomes protein 1A OS=Rattus norvegicus GN=Smc1a PE=1 SV=1 | Back alignment and function description |
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| >sp|O93308|SMC1A_XENLA Structural maintenance of chromosomes protein 1A OS=Xenopus laevis GN=smc1a PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8NDV3|SMC1B_HUMAN Structural maintenance of chromosomes protein 1B OS=Homo sapiens GN=SMC1B PE=1 SV=2 | Back alignment and function description |
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| >sp|Q920F6|SMC1B_MOUSE Structural maintenance of chromosomes protein 1B OS=Mus musculus GN=Smc1b PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1 OS=Arabidopsis thaliana GN=SMC1 PE=2 SV=2 | Back alignment and function description |
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| >sp|O94383|SMC1_SCHPO Structural maintenance of chromosomes protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psm1 PE=1 SV=2 | Back alignment and function description |
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| >sp|P32908|SMC1_YEAST Structural maintenance of chromosomes protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMC1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1070 | ||||||
| 226823349 | 1227 | structural maintenance of chromosomes 1A | 0.902 | 0.787 | 0.513 | 0.0 | |
| 193591985 | 1239 | PREDICTED: structural maintenance of chr | 0.767 | 0.662 | 0.563 | 0.0 | |
| 66506890 | 1230 | PREDICTED: structural maintenance of chr | 0.757 | 0.658 | 0.555 | 0.0 | |
| 307213364 | 1229 | Structural maintenance of chromosomes pr | 0.757 | 0.659 | 0.551 | 0.0 | |
| 307181547 | 1229 | Structural maintenance of chromosomes pr | 0.757 | 0.659 | 0.552 | 0.0 | |
| 332029385 | 1228 | Structural maintenance of chromosomes pr | 0.757 | 0.659 | 0.551 | 0.0 | |
| 350399883 | 2763 | PREDICTED: hypothetical protein LOC10074 | 0.757 | 0.293 | 0.553 | 0.0 | |
| 383855108 | 1833 | PREDICTED: structural maintenance of chr | 0.757 | 0.441 | 0.551 | 0.0 | |
| 242019635 | 1228 | structural maintenance of chromosomes sm | 0.756 | 0.658 | 0.529 | 0.0 | |
| 195445194 | 1237 | GK11152 [Drosophila willistoni] gi|19416 | 0.911 | 0.788 | 0.439 | 0.0 |
| >gi|226823349|ref|NP_001152812.1| structural maintenance of chromosomes 1A [Nasonia vitripennis] | Back alignment and taxonomy information |
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Score = 1040 bits (2690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/1158 (51%), Positives = 759/1158 (65%), Gaps = 192/1158 (16%)
Query: 8 IEVDNFKSYKG---KFSIGPLKKFTAVIGP-NGSGALKDDYERLKAEMIQAEEETNMSYL 63
++ NF ++G ++ K+ TA+ + SGALK +YERLKAEM++AEEET SY
Sbjct: 129 VKAKNFLVFQGAVESIAMKNPKERTALFEEISNSGALKAEYERLKAEMLRAEEETQFSYQ 188
Query: 64 KKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDELDKKKG 123
KKKG+ AERKEAK+EK+EAEKYQR++EE V K+VE QLF+L+HNE
Sbjct: 189 KKKGIAAERKEAKLEKEEAEKYQRLKEEYVEKQVELQLFRLFHNE--------------- 233
Query: 124 EVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSH 183
+EI ++V + KK+ + K
Sbjct: 234 ----------------------------------KEIENLEVSLKKKQHDIEK------- 252
Query: 184 IQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQD 243
I+KK A+ L E ++ + +D+A +E + +V +
Sbjct: 253 IEKKREKAEDVLKEKKKESGKLGRDLAKIEQDIREV-----------------------E 289
Query: 244 VEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADVRKRKA 303
VEI KKRP+ IK+KERV+H+QKK SAKKSL + R A+EAH KDI +L +L V + KA
Sbjct: 290 VEITKKRPAFIKAKERVAHMQKKCESAKKSLAQARVADEAHKKDINELLEELRQVEEAKA 349
Query: 304 EYE-----RQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLD 358
YE + GRD+ LE Q+ EY LK EA K++ + Q LD+INREQK DQD+LD
Sbjct: 350 TYEASIAAQSQSQGRDVQLEDEQVREYNRLKEEAGKQSARYTQMLDSINREQKSDQDRLD 409
Query: 359 NELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKN 418
NE R++ +N+IK+K H +E+A KRI+KLE+HIR +EA+L+D KKL+++L SDVG+SK+
Sbjct: 410 NEGRKKTDIENKIKQKEHMLEDATKRIEKLEEHIRTSEAALEDQKKLRQDLQSDVGTSKD 469
Query: 419 RVQELQKELEQVIEELGDAKTDKHEDTRRKKKQELVENFKKAYSGVYDRMINMCHPVHKR 478
R+QELQ+ELE + E+LGDAK DKHE +R KKK E+VENFK+ + GVYDRM NMC P+HKR
Sbjct: 470 RIQELQRELENISEQLGDAKVDKHEVSRTKKKTEIVENFKRLFPGVYDRMYNMCEPIHKR 529
Query: 479 YNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPLKERLRNIR 538
YNVAITKVLGKYMEAIVVD+EKTAR CIQYLK+ L+PETFLP+DY+Q KPLKERLRNI+
Sbjct: 530 YNVAITKVLGKYMEAIVVDTEKTARQCIQYLKEQYLEPETFLPLDYIQAKPLKERLRNIQ 589
Query: 539 DPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGT 598
+PKNVKLLYDVL++ P+DI R VLFATNNALVCETPEDA KVAY+++ + RYD VALDGT
Sbjct: 590 EPKNVKLLYDVLRFSPKDIDRAVLFATNNALVCETPEDANKVAYEMDKKARYDCVALDGT 649
Query: 599 FYQKSGIMSGGSLDLARKAKRWDDKEMGNLKAQKEKLSEELREAMKKSRKESELNTVQST 658
FYQK+GI+SGGSLDLA+KAKRWD+K+M LKAQKEKL+EELREA+KKSRKESELNT++S
Sbjct: 650 FYQKAGIISGGSLDLAKKAKRWDEKQMSQLKAQKEKLTEELREALKKSRKESELNTIESQ 709
Query: 659 IKGLEIRLNYSRQDLQNTKSQIAKLEAEIDALNARADATEPKIKAIEASMTARGDTISRK 718
I+GLE RL Y++ DL TK QIA+L+AE++ L + D P I AIE +M R I
Sbjct: 710 IRGLETRLKYNKSDLAATKKQIAELKAELEKLQSELDKFGPTISAIEKTMAERDQEIQNI 769
Query: 719 KEEMNSVEDIVFRDFCKSIGVSTIRQYEEAELRSQQERQK-------IC----------Q 761
KE+MN+VED VF FC+SIG+S IRQYEE ELRSQ+ER K C +
Sbjct: 770 KEKMNNVEDDVFASFCESIGISNIRQYEERELRSQEERAKKRMEFENQCNRIQNQLDFEK 829
Query: 762 DKDTKKNVARWERAVSDDEEELARAQGAEEKLAGEMRAEADKLENMRATRLTKKQAVDAM 821
+DT+ NV RWERAV D E++L A+ E+ GE+ + ++E +++TR KK VD
Sbjct: 830 QRDTESNVLRWERAVQDAEDKLESAKQTEKNQKGEIENDEKQMEQLKSTRSAKKMEVDQK 889
Query: 822 DEEIGKARREVGSIAKDIQAAQKSCVNLESKLEMKKSERHDILMNCKMNDIVLPMLR--- 878
DEEIGK RREVG+IAKD+QAA K ++E+K+E +KSERH ILM+CKM DI +PML
Sbjct: 890 DEEIGKCRREVGAIAKDVQAANKQLNSIENKIEQRKSERHAILMHCKMEDIGIPMLHGNM 949
Query: 879 --------------------VQK-YDR----------------------------KLAKS 889
QK Y+R KL K
Sbjct: 950 EDIAGDMSSVASESNNESVSTQKQYERESRITIDYSSLPENLKDVDEDDLKKQTDKLTKV 1009
Query: 890 IQEMTSRLQTIQAPNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERYDK 949
I E+ + +Q IQAPN++A++KL AKE L +TNEEFE RK+AKKAK F+++KKERYD+
Sbjct: 1010 INELQNTIQRIQAPNMKAIQKLYLAKEKLQETNEEFEQLRKKAKKAKTQFEKVKKERYDR 1069
Query: 950 FTRCFEHVSNEIDG-----AGSESVLPRPFLGPENPEEPLTYRVSTTIVS---------- 994
FT CFEHVSNEID A ++S + FLGPENPEEP ++ V+
Sbjct: 1070 FTTCFEHVSNEIDPIYKSLAKNQSA--QAFLGPENPEEPYLDGINYNCVAPGKRFQPMSN 1127
Query: 995 -----------------HRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVI 1037
H Y PAPFFVLDEIDAALDNTNIGKVASYI KT +SLQTIVI
Sbjct: 1128 LSGGEKTVAALALLFAIHSYQPAPFFVLDEIDAALDNTNIGKVASYIRDKT-NSLQTIVI 1186
Query: 1038 SLKEEFFSHADSLVGICP 1055
SLKEEF+SHAD+L+GICP
Sbjct: 1187 SLKEEFYSHADALIGICP 1204
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Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193591985|ref|XP_001948129.1| PREDICTED: structural maintenance of chromosomes protein 1A-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|66506890|ref|XP_395059.2| PREDICTED: structural maintenance of chromosomes protein 1A isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|307213364|gb|EFN88816.1| Structural maintenance of chromosomes protein 1A [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|307181547|gb|EFN69109.1| Structural maintenance of chromosomes protein 1A [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|332029385|gb|EGI69340.1| Structural maintenance of chromosomes protein 1A [Acromyrmex echinatior] | Back alignment and taxonomy information |
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| >gi|350399883|ref|XP_003485670.1| PREDICTED: hypothetical protein LOC100743696 [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|383855108|ref|XP_003703060.1| PREDICTED: structural maintenance of chromosomes protein 1A-like [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|242019635|ref|XP_002430265.1| structural maintenance of chromosomes smc1, putative [Pediculus humanus corporis] gi|212515372|gb|EEB17527.1| structural maintenance of chromosomes smc1, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|195445194|ref|XP_002070216.1| GK11152 [Drosophila willistoni] gi|194166301|gb|EDW81202.1| GK11152 [Drosophila willistoni] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1070 | ||||||
| FB|FBgn0040283 | 1238 | SMC1 "SMC1" [Drosophila melano | 0.687 | 0.594 | 0.479 | 6.5e-188 | |
| RGD|61991 | 1233 | Smc1a "structural maintenance | 0.678 | 0.588 | 0.389 | 6.6e-149 | |
| UNIPROTKB|Q9Z1M9 | 1233 | Smc1a "Structural maintenance | 0.678 | 0.588 | 0.389 | 6.6e-149 | |
| ZFIN|ZDB-GENE-090506-9 | 1232 | smc1a "structural maintenance | 0.725 | 0.629 | 0.375 | 4.6e-148 | |
| UNIPROTKB|O93308 | 1232 | smc1a "Structural maintenance | 0.690 | 0.599 | 0.383 | 5.9e-148 | |
| ZFIN|ZDB-GENE-040426-57 | 1233 | smc1al "structural maintenance | 0.681 | 0.591 | 0.382 | 1.3e-145 | |
| UNIPROTKB|F6V533 | 1079 | SMC1B "Uncharacterized protein | 0.657 | 0.651 | 0.311 | 1.3e-121 | |
| UNIPROTKB|E2QRT5 | 1235 | SMC1B "Structural maintenance | 0.681 | 0.590 | 0.328 | 4.7e-116 | |
| UNIPROTKB|Q8NDV3 | 1235 | SMC1B "Structural maintenance | 0.682 | 0.591 | 0.318 | 1.4e-114 | |
| RGD|1308791 | 1247 | Smc1b "structural maintenance | 0.675 | 0.579 | 0.313 | 2.1e-113 |
| FB|FBgn0040283 SMC1 "SMC1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1707 (606.0 bits), Expect = 6.5e-188, Sum P(2) = 6.5e-188
Identities = 368/768 (47%), Positives = 505/768 (65%)
Query: 133 EKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAK 192
+K + I E+K+ + E + D+ R + E N+K+ R+ H+++ +
Sbjct: 210 QKKKGIAAERKEAK----HEKMEADRYTR-LQNEYNEKQVEY--QLFRLFHVERDIRKFT 262
Query: 193 KSLVEVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPS 252
L EVRQ + + ++ +K+ A + + D + + ++NK+RP
Sbjct: 263 SDL-EVRQQEVKAVEQRKEAADEILREKKKDAGKITRDLAKIDQEIREFE-TQMNKRRPL 320
Query: 253 LIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQLADV---RKR-KAEYERQ 308
IK+KE+V+H +KKL S +K+L R+A+ AH DI LE QLADV +KR + E E +
Sbjct: 321 YIKAKEKVTHCKKKLISLQKTLETAREADNAHQSDIRKLEKQLADVEALKKRFEDEIENE 380
Query: 309 SIP-GRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLDNELRQQVQT 367
S G+ +N+E + EY LK EA A + +LD++NREQK +QD LD E ++
Sbjct: 381 SQRRGKSVNMEEGLVQEYDRLKQEAEATATQYRSELDSVNREQKSEQDTLDGETNRRASV 440
Query: 368 QNEIKKKRHEMEEAQKRIDKLEDHIRQNEASXXXXXXXXXXXXSDVGSSKNRVQELQKEL 427
+ KK + EEA KR DKL DHI+ ++A+ DVG+SK ++ E Q+EL
Sbjct: 441 EESFKKLTLQREEAVKRRDKLMDHIKSSQAALEEQNRIKDELRRDVGTSKEKIAEKQREL 500
Query: 428 EQVIEELGDAKTDKHEDTRRKKKQELVENFKKAYSGVYDRMINMCHPVHKRYNVAITKVL 487
E V ++LGDAK+DKHED RRKKKQE+VE FKK GVYDRMINMC P HKRYNVA+TKVL
Sbjct: 501 EDVRDQLGDAKSDKHEDARRKKKQEVVELFKKQVPGVYDRMINMCQPTHKRYNVAVTKVL 560
Query: 488 GKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPLKERLRNIRDPKNVKLLY 547
GK+MEAI+VD+EKTAR CIQ LK+ L+ ETFLP+DYLQ KPLKERLRNI DP+NV+L++
Sbjct: 561 GKFMEAIIVDTEKTARHCIQILKEQMLEVETFLPLDYLQVKPLKERLRNISDPRNVRLVF 620
Query: 548 DVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMS 607
DVLK++P++I+R VLFAT NALVCETPEDAMKVAY+I+ + R+DA+ALDGTFYQKSG++S
Sbjct: 621 DVLKFEPQEIERAVLFATGNALVCETPEDAMKVAYEID-RSRFDALALDGTFYQKSGLIS 679
Query: 608 GGSLDLARKAKRWDDKEMGNLKAQKEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLN 667
GGS DLARKAKRWD+K M LK QKE+L EEL+E +KKSRK+SEL TV+S IKGLE RL
Sbjct: 680 GGSHDLARKAKRWDEKHMAQLKMQKERLQEELKELVKKSRKQSELATVESQIKGLENRLK 739
Query: 668 YSRQDLQNTKSQIAKLEAEIDALNARADATEPKIKAIEASMTARGDTISRKKEEMNSVED 727
YS DL+++K I++ + ++ + ++ D PKI IE M R + I KE MN+VED
Sbjct: 740 YSMVDLESSKKSISQYDNQLQQVQSQLDEFGPKILEIERRMQNREEHIQEIKENMNNVED 799
Query: 728 IVFRDFCKSIGVSTIRQYEEAELRSQQER--------QKIC---------QDKDTKKNVA 770
V+ FC+ +GV IRQYEE EL QQER Q+I + KDTKKNV
Sbjct: 800 KVYASFCRRLGVKNIRQYEERELVMQQERARKRAEFEQQIDSINSQLDFEKQKDTKKNVE 859
Query: 771 RWERAVSDDEEELARAQGAEEKLAGEMRAEADKLENMRATRLTKKQAVDAMDEEIGKARR 830
RWER+V D+E+ L + AE + E+ + +K+E + + KKQAVD M+E+I KAR+
Sbjct: 860 RWERSVQDEEDALEGLKLAEARYLKEIDEDKEKMEKFKQDKQAKKQAVDDMEEDISKARK 919
Query: 831 EVGSIAKDIQAAQKSCVNLESKLEMKKSERHDILMNCKMNDIVLPMLR 878
+V ++AK+I +ESK+E KK+ER +IL+ K + IV+P+LR
Sbjct: 920 DVANLAKEIHNVGSHLSAVESKIEAKKNERQNILLQAKTDCIVVPLLR 967
|
|
| RGD|61991 Smc1a "structural maintenance of chromosomes 1A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9Z1M9 Smc1a "Structural maintenance of chromosomes protein 1A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-090506-9 smc1a "structural maintenance of chromosomes 1A" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O93308 smc1a "Structural maintenance of chromosomes protein 1A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-040426-57 smc1al "structural maintenance of chromosomes 1A, like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F6V533 SMC1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2QRT5 SMC1B "Structural maintenance of chromosomes protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8NDV3 SMC1B "Structural maintenance of chromosomes protein 1B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| RGD|1308791 Smc1b "structural maintenance of chromosomes 1B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9CU62 | SMC1A_MOUSE | No assigned EC number | 0.3726 | 0.8747 | 0.7591 | yes | N/A |
| O97593 | SMC1A_BOVIN | No assigned EC number | 0.3726 | 0.8747 | 0.7591 | yes | N/A |
| Q14683 | SMC1A_HUMAN | No assigned EC number | 0.3726 | 0.8747 | 0.7591 | yes | N/A |
| Q9Z1M9 | SMC1A_RAT | No assigned EC number | 0.3717 | 0.8747 | 0.7591 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1070 | |||
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-69 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-46 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-43 | |
| cd03275 | 247 | cd03275, ABC_SMC1_euk, ATP-binding cassette domain | 2e-32 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-30 | |
| smart00968 | 120 | smart00968, SMC_hinge, SMC proteins Flexible Hinge | 4e-24 | |
| pfam06470 | 117 | pfam06470, SMC_hinge, SMC proteins Flexible Hinge | 1e-23 | |
| cd03274 | 212 | cd03274, ABC_SMC4_euk, ATP-binding cassette domain | 2e-14 | |
| cd03239 | 178 | cd03239, ABC_SMC_head, The SMC head domain belongs | 1e-12 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-12 | |
| cd03275 | 247 | cd03275, ABC_SMC1_euk, ATP-binding cassette domain | 6e-12 | |
| cd03278 | 197 | cd03278, ABC_SMC_barmotin, ATP-binding cassette do | 8e-12 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-10 | |
| cd03273 | 251 | cd03273, ABC_SMC2_euk, ATP-binding cassette domain | 1e-09 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-09 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-09 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-08 | |
| cd03274 | 212 | cd03274, ABC_SMC4_euk, ATP-binding cassette domain | 3e-08 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-07 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 1e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-07 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 2e-07 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 3e-07 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 3e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-07 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 1e-06 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 1e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-06 | |
| PRK01156 | 895 | PRK01156, PRK01156, chromosome segregation protein | 3e-06 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 4e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 5e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 8e-06 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 8e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 4e-05 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 4e-05 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 5e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-05 | |
| pfam13514 | 1118 | pfam13514, AAA_27, AAA domain | 8e-05 | |
| pfam13166 | 713 | pfam13166, AAA_13, AAA domain | 9e-05 | |
| cd03278 | 197 | cd03278, ABC_SMC_barmotin, ATP-binding cassette do | 1e-04 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 1e-04 | |
| pfam13166 | 713 | pfam13166, AAA_13, AAA domain | 1e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 3e-04 | |
| COG4985 | 289 | COG4985, COG4985, ABC-type phosphate transport sys | 3e-04 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 3e-04 | |
| pfam09731 | 493 | pfam09731, Mitofilin, Mitochondrial inner membrane | 3e-04 | |
| PRK11281 | 1113 | PRK11281, PRK11281, hypothetical protein; Provisio | 5e-04 | |
| PHA02562 | 562 | PHA02562, 46, endonuclease subunit; Provisional | 8e-04 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 9e-04 | |
| cd03239 | 178 | cd03239, ABC_SMC_head, The SMC head domain belongs | 0.001 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 0.001 | |
| pfam08317 | 321 | pfam08317, Spc7, Spc7 kinetochore protein | 0.001 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 0.002 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 0.002 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.003 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 0.003 | |
| PRK10929 | 1109 | PRK10929, PRK10929, putative mechanosensitive chan | 0.003 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 0.003 | |
| pfam10186 | 307 | pfam10186, Atg14, UV radiation resistance protein | 0.003 | |
| TIGR03185 | 650 | TIGR03185, DNA_S_dndD, DNA sulfur modification pro | 0.003 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 0.003 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 251 bits (644), Expect = 5e-69
Identities = 224/1074 (20%), Positives = 482/1074 (44%), Gaps = 154/1074 (14%)
Query: 36 GSGALKDDYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAK 95
G K+ E + ++ + EE + + + ++ + + ++AE+YQ ++ E+
Sbjct: 166 GVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELREL 225
Query: 96 EVEHQLFKLYHNETDIKELEDELDKKKGEVEKIERRKEKAENILREKKKEQGALNRELAK 155
E+ L KL +++ELE+EL + + E+E+++ E+AE + E K E L EL +
Sbjct: 226 ELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEE 285
Query: 156 VDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANEAHNKDIADLETQ 215
+ +E+ E+ EI + + +ER+ ++ +L ++ L E+++ EA +++ + ET
Sbjct: 286 LQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETL 345
Query: 216 LADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKSLV 275
L ++ + AE E E +++KL++ + L
Sbjct: 346 LEELEQLLAELE------------------------------EAKEELEEKLSALLEELE 375
Query: 276 EVRQANEAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKR 335
E L +LA++ AE +
Sbjct: 376 E----------LFEALREELAELEAELAEIRNE--------------------------- 398
Query: 336 AGKILQQLDTINREQKGDQDKLDNELRQQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQN 395
L+ + RE + +++L+ + + E+K+ E+EE Q +++L + + +
Sbjct: 399 -------LEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEEL 451
Query: 396 EASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAKTDKHEDTRRKKKQELVE 455
E L++ + +EL ++ + +Q L+KEL + L + ++ + ++E
Sbjct: 452 EEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVR---AVLE 508
Query: 456 NFKKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLD 515
+ GVY + + V ++Y A+ LG ++A+VV++E+ A+ I++LK+++
Sbjct: 509 ALESGLPGVYGPVAELIK-VKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAG 567
Query: 516 PETFLPIDYLQTKPLKERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPE 575
TFLP+D ++ L++ P + L D++ + P+ + V F + LV + E
Sbjct: 568 RATFLPLDRIKPLR---SLKSDAAPGFLGLASDLIDFDPK-YEPAVRFVLGDTLVVDDLE 623
Query: 576 DAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGG-----SLDLARKAKRWDDKEMGNLKA 630
A ++A + + +Y V LDG + SG ++GG S ++ + ++E+ L+A
Sbjct: 624 QARRLAR--KLRIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEA 681
Query: 631 QKEKLSEELREAMKKSRK-ESELNTVQSTIKGLEIRLNYSRQDLQNTKSQIAKLEAEIDA 689
Q EKL EEL+ + R E L ++ ++ LE L+ K ++A LE E++
Sbjct: 682 QLEKLEEELKSLKNELRSLEDLLEELRRQLEELER-------QLEELKRELAALEEELEQ 734
Query: 690 LNARADATEPKIKAIEASMTARGDTISRKKEEMNSVEDIVFRDFCKSIGVSTIRQYEEAE 749
L +R + E +++ +E + + + +EE+ S+E+ + + + + RQ + E
Sbjct: 735 LQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEE 794
Query: 750 LRSQQE---------RQKICQDKDTKKNVARWERAVSDDEEELARAQGAEEKLAGEMRAE 800
L +E + + ++ R E+ + + EEE+ + ++L E+
Sbjct: 795 LEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEEL 854
Query: 801 ADKLENMRATRLTKKQAVDAMDEEIGKARREVGSIAKDIQAAQKSCVNLESKLEMKKSER 860
+LE ++ + + +++E+ + E + ++++ + L+ ++E +
Sbjct: 855 EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914
Query: 861 HDILMNCKMNDIVLPMLRVQKYD-------RKLAKSIQEMTSRLQTIQAPNLRAMEKLEH 913
++ + ++ LP L + + +L + I+ + ++ + NLRA+E+ E
Sbjct: 915 EELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEE 974
Query: 914 AKENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVS-------NEIDGAGS 966
+E + + E+ + +K + + KE+ ++F F+ ++ E+ G G+
Sbjct: 975 VEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGT 1034
Query: 967 ESVLPRPFLGPENPEEPLTYRV----------------------STTIVS-----HRYHP 999
L P++PLT + S T ++ +Y P
Sbjct: 1035 AE------LELTEPDDPLTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRP 1088
Query: 1000 APFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGI 1053
APF+VLDE+DAALD+ N+ +VA I ++++ Q IVI+ ++ AD LVG+
Sbjct: 1089 APFYVLDEVDAALDDANVERVARLIKEMSKET-QFIVITHRKGTMEAADRLVGV 1141
|
Length = 1163 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|213242 cd03275, ABC_SMC1_euk, ATP-binding cassette domain of eukaryotic SMC1 proteins | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|214944 smart00968, SMC_hinge, SMC proteins Flexible Hinge Domain | Back alignment and domain information |
|---|
| >gnl|CDD|219044 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Domain | Back alignment and domain information |
|---|
| >gnl|CDD|213241 cd03274, ABC_SMC4_euk, ATP-binding cassette domain of eukaryotic SMC4 proteins | Back alignment and domain information |
|---|
| >gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|213242 cd03275, ABC_SMC1_euk, ATP-binding cassette domain of eukaryotic SMC1 proteins | Back alignment and domain information |
|---|
| >gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a member of the SMC protein family | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|213240 cd03273, ABC_SMC2_euk, ATP-binding cassette domain of eukaryotic SMC2 proteins | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
| >gnl|CDD|213241 cd03274, ABC_SMC4_euk, ATP-binding cassette domain of eukaryotic SMC4 proteins | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|205692 pfam13514, AAA_27, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|221952 pfam13166, AAA_13, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a member of the SMC protein family | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|221952 pfam13166, AAA_13, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227318 COG4985, COG4985, ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein | Back alignment and domain information |
|---|
| >gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
| >gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and autophagy-related subunit 14 | Back alignment and domain information |
|---|
| >gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1070 | |||
| KOG0018|consensus | 1141 | 100.0 | ||
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 100.0 | |
| KOG0996|consensus | 1293 | 100.0 | ||
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 100.0 | |
| KOG0964|consensus | 1200 | 100.0 | ||
| KOG0933|consensus | 1174 | 100.0 | ||
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 100.0 | |
| KOG0250|consensus | 1074 | 100.0 | ||
| PRK02224 | 880 | chromosome segregation protein; Provisional | 100.0 | |
| KOG0979|consensus | 1072 | 100.0 | ||
| PRK03918 | 880 | chromosome segregation protein; Provisional | 100.0 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 100.0 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 99.98 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.97 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.96 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.96 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 99.96 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.94 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.94 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.92 | |
| KOG0962|consensus | 1294 | 99.9 | ||
| KOG0996|consensus | 1293 | 99.87 | ||
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 99.85 | |
| KOG0161|consensus | 1930 | 99.85 | ||
| PF13514 | 1111 | AAA_27: AAA domain | 99.84 | |
| KOG0161|consensus | 1930 | 99.8 | ||
| COG4717 | 984 | Uncharacterized conserved protein [Function unknow | 99.78 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.74 | |
| KOG0964|consensus | 1200 | 99.72 | ||
| COG0497 | 557 | RecN ATPase involved in DNA repair [DNA replicatio | 99.7 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.7 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.68 | |
| KOG0250|consensus | 1074 | 99.65 | ||
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.63 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.62 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.6 | |
| KOG0933|consensus | 1174 | 99.57 | ||
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 99.56 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.56 | |
| KOG4674|consensus | 1822 | 99.39 | ||
| KOG0018|consensus | 1141 | 99.37 | ||
| PF06470 | 120 | SMC_hinge: SMC proteins Flexible Hinge Domain; Int | 99.35 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 99.32 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 99.3 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 99.28 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.23 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.22 | |
| KOG4674|consensus | 1822 | 99.19 | ||
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 99.12 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 99.12 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 99.11 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 99.03 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 98.92 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 98.87 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 98.83 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.81 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 98.72 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 98.7 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.68 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 98.57 | |
| KOG0977|consensus | 546 | 98.56 | ||
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 98.53 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 98.5 | |
| KOG0962|consensus | 1294 | 98.46 | ||
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 98.39 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 98.37 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 98.37 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 98.32 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 98.27 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 98.26 | |
| COG3096 | 1480 | MukB Uncharacterized protein involved in chromosom | 98.24 | |
| KOG0977|consensus | 546 | 98.17 | ||
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 98.14 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 98.11 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.1 | |
| PRK11637 | 428 | AmiB activator; Provisional | 98.04 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 98.03 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 98.0 | |
| PF13166 | 712 | AAA_13: AAA domain | 97.95 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 97.95 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 97.93 | |
| KOG0976|consensus | 1265 | 97.91 | ||
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.91 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 97.9 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 97.9 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 97.89 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 97.88 | |
| KOG4643|consensus | 1195 | 97.88 | ||
| PRK11637 | 428 | AmiB activator; Provisional | 97.87 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 97.87 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.86 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 97.83 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 97.83 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 97.82 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 97.82 | |
| KOG0946|consensus | 970 | 97.82 | ||
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 97.82 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 97.81 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 97.8 | |
| COG4637 | 373 | Predicted ATPase [General function prediction only | 97.78 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 97.77 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 97.77 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 97.77 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 97.77 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 97.77 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 97.76 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 97.75 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 97.75 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 97.74 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 97.74 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 97.74 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 97.73 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 97.73 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.73 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 97.72 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 97.71 | |
| KOG1029|consensus | 1118 | 97.71 | ||
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 97.71 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 97.71 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 97.71 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 97.71 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 97.7 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 97.7 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 97.69 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 97.69 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 97.69 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 97.68 | |
| KOG1029|consensus | 1118 | 97.68 | ||
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 97.68 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 97.68 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 97.67 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 97.67 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 97.67 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 97.66 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 97.66 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 97.66 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 97.66 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 97.66 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 97.65 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 97.65 | |
| KOG0994|consensus | 1758 | 97.65 | ||
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 97.65 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 97.65 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 97.65 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 97.64 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 97.64 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 97.64 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 97.64 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 97.63 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 97.63 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 97.63 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 97.62 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 97.62 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 97.62 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 97.61 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 97.61 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 97.61 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.6 | |
| PF13166 | 712 | AAA_13: AAA domain | 97.6 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 97.6 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 97.6 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 97.59 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 97.59 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 97.58 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 97.58 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 97.58 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 97.57 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 97.57 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 97.57 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 97.57 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 97.56 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 97.56 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 97.56 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 97.56 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 97.56 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 97.56 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 97.56 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 97.56 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 97.56 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 97.55 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 97.55 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 97.55 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 97.55 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 97.55 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 97.55 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 97.54 | |
| COG4913 | 1104 | Uncharacterized protein conserved in bacteria [Fun | 97.54 | |
| COG0497 | 557 | RecN ATPase involved in DNA repair [DNA replicatio | 97.54 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 97.54 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 97.54 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 97.54 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 97.54 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 97.53 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 97.53 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 97.53 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 97.53 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 97.53 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 97.53 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 97.53 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 97.53 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 97.52 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 97.52 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 97.52 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.52 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 97.52 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 97.52 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 97.52 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 97.52 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 97.51 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 97.51 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 97.51 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 97.51 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 97.51 | |
| KOG0994|consensus | 1758 | 97.5 | ||
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.5 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 97.49 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 97.49 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 97.49 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 97.49 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 97.48 | |
| KOG0978|consensus | 698 | 97.48 | ||
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 97.47 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 97.47 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 97.46 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 97.46 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 97.46 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 97.46 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 97.46 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 97.46 | |
| KOG0946|consensus | 970 | 97.46 | ||
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 97.45 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 97.45 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 97.45 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.45 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 97.45 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 97.45 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 97.44 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 97.44 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 97.44 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 97.44 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 97.44 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 97.44 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 97.43 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 97.43 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 97.43 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 97.43 | |
| KOG0612|consensus | 1317 | 97.43 | ||
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 97.43 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 97.43 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 97.43 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 97.42 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 97.42 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 97.42 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 97.42 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 97.41 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 97.41 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 97.41 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.41 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 97.41 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 97.41 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 97.4 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 97.4 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 97.4 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 97.4 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 97.39 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 97.39 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 97.39 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 97.39 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 97.39 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.39 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.39 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 97.38 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.38 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 97.38 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 97.38 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 97.38 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 97.38 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.38 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.38 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 97.38 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 97.37 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 97.37 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 97.37 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 97.37 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 97.37 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 97.36 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 97.36 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 97.36 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.36 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.36 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 97.36 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 97.36 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 97.35 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 97.35 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.34 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 97.33 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.33 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 97.33 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 97.33 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 97.32 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 97.32 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 97.32 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 97.32 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 97.31 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 97.31 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.31 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 97.31 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 97.31 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 97.3 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 97.29 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.28 | |
| KOG0612|consensus | 1317 | 97.28 | ||
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 97.28 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 97.27 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.27 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 97.27 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 97.26 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 97.26 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 97.26 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 97.25 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 97.25 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 97.25 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 97.24 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 97.24 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.24 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.24 | |
| KOG4673|consensus | 961 | 97.23 | ||
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 97.22 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 97.21 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 97.2 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.2 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 97.19 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 97.19 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 97.19 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 97.18 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.18 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 97.18 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 97.17 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 97.17 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 97.17 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 97.17 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 97.16 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 97.16 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 97.15 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 97.14 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 97.14 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 97.13 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 97.12 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 97.12 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 97.12 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.11 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 97.11 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 97.1 | |
| PF13476 | 202 | AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V | 97.09 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 97.09 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 97.09 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 97.08 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 97.08 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 97.08 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 97.08 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 97.07 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 97.06 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 97.06 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 97.05 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 97.05 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 97.05 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 97.04 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 97.04 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 97.03 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 97.03 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 97.03 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 97.03 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 97.02 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 97.02 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 97.01 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 97.0 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 97.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 97.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 97.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 96.99 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 96.99 | |
| KOG0995|consensus | 581 | 96.99 | ||
| KOG0979|consensus | 1072 | 96.97 | ||
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 96.97 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 96.97 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 96.95 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 96.94 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 96.93 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 96.93 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 96.93 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 96.92 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 96.92 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 96.9 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 96.9 | |
| KOG0057|consensus | 591 | 96.89 | ||
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 96.88 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 96.88 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 96.88 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 96.88 | |
| KOG0963|consensus | 629 | 96.88 | ||
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 96.86 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 96.85 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 96.84 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 96.83 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 96.83 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 96.81 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 96.77 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 96.76 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 96.76 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 96.75 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 96.74 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 96.74 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 96.71 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 96.69 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 96.69 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 96.69 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 96.69 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 96.69 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 96.68 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 96.68 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 96.68 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 96.67 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 96.66 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 96.65 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 96.64 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 96.64 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 96.64 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 96.62 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 96.61 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 96.6 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 96.59 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 96.58 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 96.58 | |
| KOG4673|consensus | 961 | 96.56 | ||
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 96.55 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 96.54 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 96.52 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 96.5 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 96.5 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 96.5 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 96.49 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 96.47 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 96.45 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 96.44 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 96.44 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 96.43 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 96.42 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 96.42 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 96.4 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 96.39 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 96.38 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 96.37 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 96.36 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 96.35 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 96.34 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 96.32 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 96.3 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 96.26 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 96.25 | |
| KOG0058|consensus | 716 | 96.24 | ||
| KOG0055|consensus | 1228 | 96.23 | ||
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 96.22 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 96.17 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 96.16 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 96.13 | |
| KOG0963|consensus | 629 | 96.08 | ||
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 96.05 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 96.04 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 96.04 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 96.03 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 96.02 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 96.01 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 95.97 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 95.97 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 95.96 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 95.92 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 95.92 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 95.89 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 95.88 | |
| KOG0980|consensus | 980 | 95.88 | ||
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 95.85 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 95.79 | |
| KOG0980|consensus | 980 | 95.79 | ||
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 95.76 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 95.72 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 95.71 | |
| KOG0995|consensus | 581 | 95.64 | ||
| KOG4593|consensus | 716 | 95.63 | ||
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 95.61 | |
| COG1195 | 363 | RecF Recombinational DNA repair ATPase (RecF pathw | 95.55 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 95.49 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 95.48 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 95.42 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 95.39 | |
| COG3950 | 440 | Predicted ATP-binding protein involved in virulenc | 95.38 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 95.38 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 95.38 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 95.3 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 95.28 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 95.23 |
| >KOG0018|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-89 Score=750.08 Aligned_cols=956 Identities=44% Similarity=0.719 Sum_probs=798.0
Q ss_pred CCccccceecccccccCcccccCCCCeEEEEcCCCCc-------------------------------------------
Q psy16118 2 SPILQYIEVDNFKSYKGKFSIGPLKKFTAVIGPNGSG------------------------------------------- 38 (1070)
Q Consensus 2 ~m~~~~L~l~~F~~y~~~~~i~df~~l~lI~G~nGaG------------------------------------------- 38 (1070)
||+++.|+|.||+||+|+++||||+.|++|+||||||
T Consensus 1 ~g~L~~lEieNFKSYkGh~~iGPF~~FTaIIGPNGSGKSNlMDAISFVLGekss~LR~~~lkdLIyg~~i~~~v~l~Y~~ 80 (1141)
T KOG0018|consen 1 MGRLLTLEIENFKSYKGHQVIGPFDRFTAIIGPNGSGKSNLMDAISFVLGEKSSHLRVSHLKDLIYGKPIRKPVTLKYEE 80 (1141)
T ss_pred CCceeeeehhccccccCceeecCchhceeeeCCCCCchHHHHHHHHHHhcCCCcccccchHHHHhcCCccCCchhheeec
Confidence 7999999999999999999999999999999999999
Q ss_pred ----------------------------------------------------------------------------cchH
Q psy16118 39 ----------------------------------------------------------------------------ALKD 42 (1070)
Q Consensus 39 ----------------------------------------------------------------------------~~~~ 42 (1070)
.++.
T Consensus 81 ~dg~~~~F~R~I~~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQGdVE~IA~k~PkElt~LFEEISgSiElK~ 160 (1141)
T KOG0018|consen 81 GDGETRRFTRAINGGTSEYMIDNEIVTREEYLEELEKINILVKARNFLVFQGDVEKIAGKNPKELTALFEEISGSIELKP 160 (1141)
T ss_pred CCchhhhhhhhhcCCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEEecChHHHHhccCHHHHHHHHHHHhhhhhhhH
Confidence 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q psy16118 43 DYERLKAEMIQAEEETNMSYLKKKGVVAERKEAKIEKDEAEKYQRIREEIVAKEVEHQLFKLYHNETDIKELEDELDKKK 122 (1070)
Q Consensus 43 ~y~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1070)
+|...+.+.......+.......+.|..+.+..+....++.+|+.+.++.......+.+|+++..+..+.....++...+
T Consensus 161 EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~ 240 (1141)
T KOG0018|consen 161 EYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLN 240 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 123 GEVEKIERRKEKAENILREKKKEQGALNRELAKVDQEIREMDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQAN 202 (1070)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1070)
.++..+....+.....+...+.+.....+++......+...+..+.. ...+............++...+..+...+...
T Consensus 241 ~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~ 319 (1141)
T KOG0018|consen 241 AEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDY 319 (1141)
T ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHH
Confidence 99999999999999999888877778888888888888888877777 55667777777778888888888888887777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhhHHhhhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16118 203 EAHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQDVEINKKRPSLIKSKERVSHIQKKLASAKKSLVEVRQANE 282 (1070)
Q Consensus 203 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 282 (1070)
..+...++.++.++..+......+..+++ . ..+
T Consensus 320 ~~~~~~ie~~ek~l~av~~~~~~fekei~-------------------------------------~-------~~q--- 352 (1141)
T KOG0018|consen 320 RALKETIERLEKELKAVEGAKEEFEKEIE-------------------------------------E-------RSQ--- 352 (1141)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------H-------HHh---
Confidence 77777777777777777666655555221 0 000
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcccChHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy16118 283 AHNKDIADLETQLADVRKRKAEYERQSIPGRDINLESAQMTEYTNLKAEATKRAGKILQQLDTINREQKGDQDKLDNELR 362 (1070)
Q Consensus 283 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 362 (1070)
.....+......+.++.....++.... ..++.-+......-+..++.+..
T Consensus 353 ---------------------------~rg~~lnl~d~~~~ey~rlk~ea~~~~---~~el~~ln~~~r~~~~~ld~~~~ 402 (1141)
T KOG0018|consen 353 ---------------------------ERGSELNLKDDQVEEYERLKEEACKEA---LEELEVLNRNMRSDQDTLDHELE 402 (1141)
T ss_pred ---------------------------hccccCCcchHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhhHHH
Confidence 000011112222223333222222221 33344444444444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy16118 363 QQVQTQNEIKKKRHEMEEAQKRIDKLEDHIRQNEASLKDNKKLKEELNSDVGSSKNRVQELQKELEQVIEELGDAKTDKH 442 (1070)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 442 (1070)
....++..+..+...+.........+...+.++...+.++...+..+...+.....+...++.++.....++.++..+..
T Consensus 403 ~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~ 482 (1141)
T KOG0018|consen 403 RRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRH 482 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhc
Confidence 55666666666666666666677777777777777777777888888888888888888888888888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcceecccccccchhhHHHHHHHHhccCCCeEEeCCHHHHHHHHHHHhhcCCCCcceecC
Q psy16118 443 EDTRRKKKQELVENFKKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPI 522 (1070)
Q Consensus 443 ~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~~~~~L~~~~~~~~~~~~~ 522 (1070)
.+.+......++..|+.++|||+|++.++|+|....|..|+..++|..+++++|++...+..||.|++....|+.||+|+
T Consensus 483 e~sR~~~~~eave~lKr~fPgv~GrviDLc~pt~kkyeiAvt~~Lgk~~daIiVdte~ta~~CI~ylKeqr~~~~TFlPl 562 (1141)
T KOG0018|consen 483 EGSRRSRKQEAVEALKRLFPGVYGRVIDLCQPTQKKYEIAVTVVLGKNMDAIIVDTEATARDCIQYLKEQRLEPMTFLPL 562 (1141)
T ss_pred ccHHHHHHHHHHHHHHHhCCCccchhhhcccccHHHHHHHHHHHHhcccceEEeccHHHHHHHHHHHHHhccCCccccch
Confidence 77777778899999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CCccCCcchhhhhccCCCCCcceeeeeeccCcchHHHHHHHHhCCeEecCChHHHHhhhcccCCCccceEEeeCceeEec
Q psy16118 523 DYLQTKPLKERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRYDAVALDGTFYQK 602 (1070)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~tl~~~~~~~ 602 (1070)
+.+...++...++ .++|+..++|+|+|+ +.|++++.+++|+++||++++.|+.++|.. ..++..|+++|.+++.
T Consensus 563 d~i~v~~~~e~lr---~~~g~rlv~Dvi~ye-~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~--~~r~k~valdGtl~~k 636 (1141)
T KOG0018|consen 563 DSIRVKPVNEKLR---ELGGVRLVIDVINYE-PEYEKAVQFACGNALVCDSVEDARDLAYGG--EIRFKVVALDGTLIHK 636 (1141)
T ss_pred hhhhcCccccccc---CcCCeEEEEEecCCC-HHHHHHHHHHhccceecCCHHHHHHhhhcc--cccceEEEeeeeEEec
Confidence 9998877655554 356789999999999 699999999999999999999999999977 5678899999999999
Q ss_pred CcccccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 603 SGIMSGGSLDLARKAKRWDDKEMGNLKAQKEKLSEELREAMKKSRKESELNTVQSTIKGLEIRLNYSRQDLQNTKSQIAK 682 (1070)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~ 682 (1070)
+|.|+||+++ .. |++..+..|......+..++.++... ...+......+..++..+.....++..+...+..
T Consensus 637 sGlmsGG~s~----~~-wdek~~~~L~~~k~rl~eel~ei~~~---~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~ 708 (1141)
T KOG0018|consen 637 SGLMSGGSSG----AK-WDEKEVDQLKEKKERLLEELKEIQKR---RKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQ 708 (1141)
T ss_pred cceecCCccC----CC-cCHHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999976 33 99999999999999999999998773 2378888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH---
Q psy16118 683 LEAEIDALNARADATEPKIKAIEASMTARGDTISRKKEEMNSVEDIVFRDFCKSIGVSTIRQYEEAELRSQQERQKI--- 759 (1070)
Q Consensus 683 l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 759 (1070)
...++......+......+..+...+...+..+.+|+..++.+++.+|..++...|+. +..|++... .+.+...
T Consensus 709 ~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~-ir~Yee~~~--~~~~a~k~~e 785 (1141)
T KOG0018|consen 709 NELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVR-IREYEEREL--QQEFAKKRLE 785 (1141)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCee-eehHHHHHH--HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 888877655 2111111
Q ss_pred --------------HhhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16118 760 --------------CQDKDTKKNVARWERAVSDDEEELARAQGAEEKLAGEMRAEADKLENMRATRLTKKQAVDAMDEEI 825 (1070)
Q Consensus 760 --------------~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 825 (1070)
++..+...++..++..+..++.++..+......+...+.+. ..++. . -.......+.++
T Consensus 786 f~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-k-----~k~~~~~~~~e~ 858 (1141)
T KOG0018|consen 786 FENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-K-----NKSKFEKKEDEI 858 (1141)
T ss_pred HHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-H-----HHHHHHHHHHHH
Confidence 12245566667777777777777777776666666555555 33333 1 155566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhhh----------hHH-----HHHHHH
Q psy16118 826 GKARREVGSIAKDIQAAQKSCVNLESKLEMKKSERHDILMNCKMNDIVLPMLRVQK----------YDR-----KLAKSI 890 (1070)
Q Consensus 826 ~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-----~l~~~l 890 (1070)
.+.......+..++..+...+..++..++.+..+..+++..|....+.+|.+.++. |+. .++.+|
T Consensus 859 ~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~~ieidy~~L~~~y~L~~kl 938 (1141)
T KOG0018|consen 859 NEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVIGIEIDYSGLPREYKLQQKL 938 (1141)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCccccceecccccccccHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999888888654431 111 478999
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cc-c
Q psy16118 891 QEMTSRLQTIQAPNLRAMEKLEHAKENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVSNEIDGAG-SE-S 968 (1070)
Q Consensus 891 ~~l~~~l~~l~~~n~~a~~e~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~~i~~~~~~~f-~~-~ 968 (1070)
......|..+ .||+.|++.|+.++ +..+...++.+.+..+.+...+..+++.|+..|+.+|++|+.++..|| .+ .
T Consensus 939 ~e~~~~l~~~-~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F~~va~~Id~IYK~Ltn 1015 (1141)
T KOG0018|consen 939 EEKQSVLNRI-APNLKALERLDEVR--FQEINEEFEAARKEAKKAKNAFNKVKKKRYERFMACFEHVADNIDRIYKELTN 1015 (1141)
T ss_pred HHHHHHHHHh-CcchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999 68999999999998 999999999999999999999999999999999999999999999999 33 3
Q ss_pred CCCceeeccCCCCCCc----c---------ch----hhh---h-------hhhccccCCCeEEeecccccCChhhHHHHH
Q psy16118 969 VLPRPFLGPENPEEPL----T---------YR----VST---T-------IVSHRYHPAPFFVLDEIDAALDNTNIGKVA 1021 (1070)
Q Consensus 969 ~~~~~~l~~~~~~~~~----~---------~r----LSG---t-------~al~~~~~~Pf~ilDEvda~lD~~n~~~~~ 1021 (1070)
..|+|||++.|+++|| . || ||| | |||+.|+|||||||||||||||..|+++++
T Consensus 1016 t~g~AyL~~en~~EPyl~GIky~~~pP~KRFr~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kva 1095 (1141)
T KOG0018|consen 1016 TEGQAYLGLENPEEPYLDGIKYHCMPPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVA 1095 (1141)
T ss_pred cccceeecCCCCCcchhcCccccccCCccccCchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHH
Confidence 4599999999999998 1 34 999 5 999999999999999999999999999999
Q ss_pred HHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccceeeec
Q psy16118 1022 SYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISSICF 1065 (1070)
Q Consensus 1022 ~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~~ 1065 (1070)
.||+ + ++.||||||+++.++.+||.|+||+.+..++|+|+.
T Consensus 1096 syIr--~-~~~Q~IvISLK~~~y~kadaLVGvyr~~~~~S~vlt 1136 (1141)
T KOG0018|consen 1096 SYIR--S-SNFQFIVISLKEEFYQKADALVGVYRDQEDCSKVLT 1136 (1141)
T ss_pred HHHh--c-CCceEEEEeccHHHhhhhhceeeeccCcccccceEE
Confidence 9998 5 789999999999999999999999998888999874
|
|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0996|consensus | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >KOG0964|consensus | Back alignment and domain information |
|---|
| >KOG0933|consensus | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >KOG0250|consensus | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0979|consensus | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0962|consensus | Back alignment and domain information |
|---|
| >KOG0996|consensus | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >KOG0161|consensus | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >KOG0161|consensus | Back alignment and domain information |
|---|
| >COG4717 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >KOG0964|consensus | Back alignment and domain information |
|---|
| >COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
| >KOG0250|consensus | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0933|consensus | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG4674|consensus | Back alignment and domain information |
|---|
| >KOG0018|consensus | Back alignment and domain information |
|---|
| >PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG4674|consensus | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
| >KOG0977|consensus | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG0962|consensus | Back alignment and domain information |
|---|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
| >COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0977|consensus | Back alignment and domain information |
|---|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PF13166 AAA_13: AAA domain | Back alignment and domain information |
|---|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
| >KOG0976|consensus | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
| >KOG4643|consensus | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
| >KOG0946|consensus | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
| >COG4637 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
| >KOG1029|consensus | Back alignment and domain information |
|---|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
| >KOG1029|consensus | Back alignment and domain information |
|---|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
| >KOG0994|consensus | Back alignment and domain information |
|---|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
| >PF13166 AAA_13: AAA domain | Back alignment and domain information |
|---|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
| >COG4913 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >KOG0994|consensus | Back alignment and domain information |
|---|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0978|consensus | Back alignment and domain information |
|---|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
| >KOG0946|consensus | Back alignment and domain information |
|---|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >KOG0612|consensus | Back alignment and domain information |
|---|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0612|consensus | Back alignment and domain information |
|---|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >KOG4673|consensus | Back alignment and domain information |
|---|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A | Back alignment and domain information |
|---|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
| >KOG0995|consensus | Back alignment and domain information |
|---|
| >KOG0979|consensus | Back alignment and domain information |
|---|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >KOG0057|consensus | Back alignment and domain information |
|---|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
| >KOG0963|consensus | Back alignment and domain information |
|---|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >KOG4673|consensus | Back alignment and domain information |
|---|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
| >KOG0058|consensus | Back alignment and domain information |
|---|
| >KOG0055|consensus | Back alignment and domain information |
|---|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
| >KOG0963|consensus | Back alignment and domain information |
|---|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
| >KOG0980|consensus | Back alignment and domain information |
|---|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
| >KOG0980|consensus | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0995|consensus | Back alignment and domain information |
|---|
| >KOG4593|consensus | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
| >COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1070 | ||||
| 2wd5_A | 233 | Smc Hinge Heterodimer (Mouse) Length = 233 | 5e-63 | ||
| 1w1w_A | 430 | Sc Smc1hd:scc1-c Complex, Atpgs Length = 430 | 7e-13 | ||
| 3l51_B | 166 | Crystal Structure Of The Mouse Condensin Hinge Doma | 1e-12 | ||
| 1gxl_A | 213 | Smc Hinge Domain From T. Maritima With Coiled Coil | 6e-09 | ||
| 1xew_Y | 172 | Structural Biochemistry Of Atp-Driven Dimerization | 8e-09 | ||
| 3nwc_A | 189 | Crystal Structure Of The Pyrococcus Furiosus Smc Pr | 1e-08 | ||
| 1xex_B | 172 | Structural Biochemistry Of Atp-Driven Dimerization | 2e-08 | ||
| 3kta_B | 173 | Structural Basis For Adenylate Kinase Activity In A | 4e-08 | ||
| 4i99_A | 354 | Crystal Structure Of The Smchead Bound To The C-win | 1e-06 | ||
| 1gxj_A | 186 | Smc Hinge Domain From T. Maritima WO COILED COIL Le | 2e-05 | ||
| 3l51_A | 161 | Crystal Structure Of The Mouse Condensin Hinge Doma | 9e-05 | ||
| 3zgx_A | 426 | Crystal Structure Of The Kleisin-n Smc Interface In | 1e-04 |
| >pdb|2WD5|A Chain A, Smc Hinge Heterodimer (Mouse) Length = 233 | Back alignment and structure |
|
| >pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs Length = 430 | Back alignment and structure |
| >pdb|3L51|B Chain B, Crystal Structure Of The Mouse Condensin Hinge Domain Length = 166 | Back alignment and structure |
| >pdb|1GXL|A Chain A, Smc Hinge Domain From T. Maritima With Coiled Coil Length = 213 | Back alignment and structure |
| >pdb|1XEW|Y Chain Y, Structural Biochemistry Of Atp-Driven Dimerization And Dna Stimulated Activation Of Smc Atpases Length = 172 | Back alignment and structure |
| >pdb|3NWC|A Chain A, Crystal Structure Of The Pyrococcus Furiosus Smc Protein Hinge Domain Length = 189 | Back alignment and structure |
| >pdb|1XEX|B Chain B, Structural Biochemistry Of Atp-Driven Dimerization And Dna Stimulated Activation Of Smc Atpases Length = 172 | Back alignment and structure |
| >pdb|3KTA|B Chain B, Structural Basis For Adenylate Kinase Activity In Abc Atpases Length = 173 | Back alignment and structure |
| >pdb|4I99|A Chain A, Crystal Structure Of The Smchead Bound To The C-winged Helix Domain Of Scpa Length = 354 | Back alignment and structure |
| >pdb|1GXJ|A Chain A, Smc Hinge Domain From T. Maritima WO COILED COIL Length = 186 | Back alignment and structure |
| >pdb|3L51|A Chain A, Crystal Structure Of The Mouse Condensin Hinge Domain Length = 161 | Back alignment and structure |
| >pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In Prokaryotic Condensin Length = 426 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus} Length = 233 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 7e-60
Identities = 115/235 (48%), Positives = 168/235 (71%), Gaps = 6/235 (2%)
Query: 412 DVGSSKNRVQELQKELEQVIEELGDAKTDKHEDTRRKKKQELVENFKKAY-SGVYDRMIN 470
+V +K R+ E+ KEL QV+E+LGDA+ D+ E +R+++K E++E+ K+ Y VY R+I+
Sbjct: 2 EVEMAKRRIDEINKELNQVMEQLGDARIDRQESSRQQRKAEIMESIKRLYPGSVYGRLID 61
Query: 471 MCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLKDHQLDPETFLPIDYLQTKPL 530
+C P K+Y +A+TKVLGK M+AI+VDSEKT R CIQY+K+ + +PETFLP+DYL+ KP
Sbjct: 62 LCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPT 121
Query: 531 KERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALVCETPEDAMKVAYDIEPQHRY 590
E+LR K KL+ DV++Y+P IK+ + +A NALVC+ EDA ++A+ R+
Sbjct: 122 DEKLRE---LKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFG--GHQRH 176
Query: 591 DAVALDGTFYQKSGIMSGGSLDLARKAKRWDDKEMGNLKAQKEKLSEELREAMKK 645
VALDGT +QKSG++SGG+ DL KA+RWD+K + LK +K +L+EEL E
Sbjct: 177 KTVALDGTLFQKSGVISGGASDLKAKARRWDEKAVDKLKEKKGRLTEELLEHHHH 231
|
| >3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} Length = 166 | Back alignment and structure |
|---|
| >1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1 Length = 213 | Back alignment and structure |
|---|
| >3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus} Length = 189 | Back alignment and structure |
|---|
| >3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} Length = 161 | Back alignment and structure |
|---|
| >1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A Length = 186 | Back alignment and structure |
|---|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430 | Back alignment and structure |
|---|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430 | Back alignment and structure |
|---|
| >2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus} Length = 213 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* Length = 173 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 Length = 322 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 | Back alignment and structure |
|---|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1070 | |||
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.86 | |
| 2wd5_A | 233 | Structural maintenance of chromosomes protein 1A; | 99.77 | |
| 3l51_B | 166 | Structural maintenance of chromosomes protein 4; s | 99.76 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.68 | |
| 3nwc_A | 189 | SMC protein; structural maintenance of chromosomes | 99.67 | |
| 3l51_A | 161 | Structural maintenance of chromosomes protein 2; s | 99.66 | |
| 2wd5_B | 213 | Structural maintenance of chromosomes protein 3; D | 99.62 | |
| 1gxl_A | 213 | SMC, chromosome segregation SMC protein; SMC dimer | 99.52 | |
| 1gxj_A | 186 | SMC, chromosome segregation SMC protein; SMC dimer | 99.44 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.15 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 99.02 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.87 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 98.81 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.62 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 98.61 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.6 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 98.45 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.21 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.12 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.92 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.9 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.89 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.89 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.88 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 97.82 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.81 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.75 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.75 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.75 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.72 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.7 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.69 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.69 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.68 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.68 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.67 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.65 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.65 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.64 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 97.63 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.62 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.59 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.57 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.57 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.56 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 97.55 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.53 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.46 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 97.41 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.34 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.33 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.31 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 97.31 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 97.31 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 97.26 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 97.26 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 97.25 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 97.24 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 97.23 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.21 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.19 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 97.14 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 97.12 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 97.08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 97.07 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.02 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 96.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.95 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 96.92 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 96.92 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 96.87 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 96.83 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 96.83 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.81 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 96.79 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.77 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.75 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 96.74 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.73 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.7 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 96.7 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 96.69 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 96.67 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 96.66 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 96.65 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.65 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 96.62 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 96.6 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 96.57 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 96.54 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 96.54 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 96.48 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 96.47 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.45 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 96.42 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 96.4 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 96.39 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 96.38 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 96.11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.07 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.06 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 96.01 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 95.95 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 95.58 | |
| 3u1c_A | 101 | Tropomyosin alpha-1 chain; anti-parallel coiled co | 95.14 | |
| 3u59_A | 101 | Tropomyosin beta chain; muscle contraction, actin, | 94.15 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 93.78 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 93.67 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 93.03 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 92.92 | |
| 3tnu_B | 129 | Keratin, type II cytoskeletal 5; coiled-coil, stru | 92.69 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 92.34 | |
| 3tnu_A | 131 | Keratin, type I cytoskeletal 14; coiled-coil, stru | 92.31 | |
| 3ghg_A | 562 | Fibrinogen alpha chain; triple-stranded coiled coi | 92.04 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 91.51 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 90.96 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 90.68 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 90.28 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 90.11 | |
| 1l8d_A | 112 | DNA double-strand break repair RAD50 ATPase; zinc | 89.87 | |
| 2eqb_B | 97 | RAB guanine nucleotide exchange factor SEC2; coile | 89.74 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 89.44 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 88.83 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 88.6 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 88.23 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 87.87 | |
| 3swk_A | 86 | Vimentin; cytoskeleton, intermediate filament, alp | 87.65 | |
| 3hnw_A | 138 | Uncharacterized protein; coiled-coil, structural g | 87.49 | |
| 3ol1_A | 119 | Vimentin; structural genomics, PSI-2, protein stru | 87.29 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 86.94 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 86.48 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 85.43 | |
| 3swk_A | 86 | Vimentin; cytoskeleton, intermediate filament, alp | 85.17 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 84.22 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 84.1 | |
| 3ibp_A | 302 | Chromosome partition protein MUKB; structural main | 81.09 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 80.84 |
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-22 Score=187.67 Aligned_cols=123 Identities=32% Similarity=0.499 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-cccCCCceeeccCCCCCCcc-----------c-----h-hhh---h-------hhh
Q psy16118 943 KKERYDKFTRCFEHVSNEIDGAG-SESVLPRPFLGPENPEEPLT-----------Y-----R-VST---T-------IVS 994 (1070)
Q Consensus 943 ~~~~~~~f~~~~~~i~~~~~~~f-~~~~~~~~~l~~~~~~~~~~-----------~-----r-LSG---t-------~al 994 (1070)
+.++.+.|..+|+.|+.+|..+| .+++||.+.+.+.++.+++. . . ||| + ||+
T Consensus 2 ~~~~~~~f~~~f~~i~~~f~~~f~~L~~~g~~~l~l~~~~~~~~~gl~i~~~~~~~~~~~~~~LSgGekqr~ala~~la~ 81 (173)
T 3kta_B 2 EKEKKNVFMRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAI 81 (173)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCSSSGGGSCEEEEEETTSSSCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeeCCCCccccCceEEecCCCccccccccCCHHHHHHHHHHHHHHh
Confidence 45788899999999999999999 78899999998888877651 0 1 999 2 666
Q ss_pred ccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEecCcchHhhcchheeeccCCccceeeeccc
Q psy16118 995 HRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVISLKEEFFSHADSLVGICPGSVTISSICFGH 1067 (1070)
Q Consensus 995 ~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT~~~~~~~~ad~l~gVt~~~~gvs~v~~~~ 1067 (1070)
+.+.|+|||||||++++||..|+.+|.++|+.++ ...|||||||+..++..||.+|||+| ++|+|+|+...
T Consensus 82 ~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~-~~~~~ivith~~~~~~~ad~i~~v~~-~~g~s~~~~~~ 152 (173)
T 3kta_B 82 QKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS-KESQFIVITLRDVMMANADKIIGVSM-RDGVSKVVSLS 152 (173)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSEEEEEEE-ETTEEEEEECC
T ss_pred cccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc-cCCEEEEEEecHHHHHhCCEEEEEEe-cCCEEEEEEEE
Confidence 6678999999999999999999999999999997 88999999999999999999999999 68999998643
|
| >2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus} | Back alignment and structure |
|---|
| >3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0 | Back alignment and structure |
|---|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
| >3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
| >3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} | Back alignment and structure |
|---|
| >2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus} | Back alignment and structure |
|---|
| >1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1 | Back alignment and structure |
|---|
| >1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A | Back alignment and structure |
|---|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
| >3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A | Back alignment and structure |
|---|
| >3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
| >3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
| >3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* | Back alignment and structure |
|---|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
| >1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 | Back alignment and structure |
|---|
| >2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
| >3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} | Back alignment and structure |
|---|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
| >3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
| >3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1070 | ||||
| d1gxja_ | 161 | d.215.1.1 (A:) Smc hinge domain {Thermotoga mariti | 2e-30 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 2e-12 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 5e-05 | |
| d1e69a_ | 308 | c.37.1.12 (A:) Smc head domain {Thermotoga maritim | 1e-06 | |
| d1e69a_ | 308 | c.37.1.12 (A:) Smc head domain {Thermotoga maritim | 4e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-06 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| g1xew.1 | 329 | c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furi | 2e-04 | |
| g1xew.1 | 329 | c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furi | 0.003 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.003 |
| >d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Smc hinge domain superfamily: Smc hinge domain family: Smc hinge domain domain: Smc hinge domain species: Thermotoga maritima [TaxId: 2336]
Score = 115 bits (290), Expect = 2e-30
Identities = 39/160 (24%), Positives = 80/160 (50%), Gaps = 6/160 (3%)
Query: 451 QELVENFKKAYSGVYDRMINMCHPVHKRYNVAITKVLGKYMEAIVVDSEKTARLCIQYLK 510
+ + E K+ + G+ D + N+ V ++Y++A++ +LG + IVV + TA+ +++LK
Sbjct: 7 RAVFEE-KERFPGLVDVVSNLIE-VDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLK 64
Query: 511 DHQLDPETFLPIDYLQTKPLKERLRNIRDPKNVKLLYDVLKYQPEDIKRVVLFATNNALV 570
++ T LP+D + + + V D++K+ P D++ + F N++V
Sbjct: 65 QNEAGRVTILPLDLIDGSFNRIS-GLENERGFVGYAVDLVKF-PSDLEVLGGFLFGNSVV 122
Query: 571 CETPEDAMKVAYDIEPQHRYDAVALDGTFYQKSGIMSGGS 610
ET +DA+++ + LDG G ++GG
Sbjct: 123 VETLDDAIRMKKK--YRLNTRIATLDGELISGRGAITGGR 160
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Length = 308 | Back information, alignment and structure |
|---|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Length = 308 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1070 | |||
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.74 | |
| d1gxja_ | 161 | Smc hinge domain {Thermotoga maritima [TaxId: 2336 | 99.7 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.2 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.03 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.03 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.72 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 98.25 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 98.22 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 98.16 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 98.09 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 98.05 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.94 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.67 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.65 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.62 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 97.57 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.55 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.54 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.54 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 97.53 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 97.51 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.5 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.47 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.42 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.4 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.39 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.37 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.35 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.33 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.25 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.17 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.66 |
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=6.6e-19 Score=197.43 Aligned_cols=150 Identities=37% Similarity=0.537 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-c---------ccCCCceeeccCCCCCCc-
Q psy16118 916 ENLMKTNEEFENARKRAKKAKANFDRIKKERYDKFTRCFEHVSNEIDGAG-S---------ESVLPRPFLGPENPEEPL- 984 (1070)
Q Consensus 916 ~~~~~l~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~~i~~~~~~~f-~---------~~~~~~~~l~~~~~~~~~- 984 (1070)
..+..+...++.+......+...+..+.......+...+..++.++..+| . ...+|.+.+.+.+.++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 313 (427)
T d1w1wa_ 234 GRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFN 313 (427)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHHTC-----------CEEEEC---------
T ss_pred cccccccccchhhhhhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCceeEEeeeccCcccc
Confidence 33444444444444444445555555555555556666666666666655 1 123567777766554443
Q ss_pred ---------------cch-hhh---h-------hhhccccCCCeEEeecccccCChhhHHHHHHHHHHhcCCCceEEEEe
Q psy16118 985 ---------------TYR-VST---T-------IVSHRYHPAPFFVLDEIDAALDNTNIGKVASYIVTKTQDSLQTIVIS 1038 (1070)
Q Consensus 985 ---------------~~r-LSG---t-------~al~~~~~~Pf~ilDEvda~lD~~n~~~~~~~l~~~~~~~~Q~i~iT 1038 (1070)
.+. ||| | ||+|.+.|+||+||||||++||+.|+.+++++|.++++..+||||||
T Consensus 314 ~~i~i~~~~~~~~~~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iT 393 (427)
T d1w1wa_ 314 AGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS 393 (427)
T ss_dssp ---CEEEECTTCCCCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEEC
T ss_pred cCceEEEEeccchhhhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 112 899 3 89999999999999999999999999999999998854788999999
Q ss_pred cCcchHhhcchheeecc-CCccceeeec
Q psy16118 1039 LKEEFFSHADSLVGICP-GSVTISSICF 1065 (1070)
Q Consensus 1039 ~~~~~~~~ad~l~gVt~-~~~gvs~v~~ 1065 (1070)
|+|.+|..||.+|+||+ ..+|+|+||.
T Consensus 394 H~~~~~~~ad~~~~V~~~~~~g~s~~~~ 421 (427)
T d1w1wa_ 394 LKNTMFEKSDALVGVYRQQQENSSKIIT 421 (427)
T ss_dssp SCHHHHTTCSEEEEEEEETTTTEEEEEE
T ss_pred CCHHHHHhcccEEEEEEeCCCCeEEEEE
Confidence 99999999999999997 7889999984
|
| >d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|