Psyllid ID: psy16163

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-----
Protein Sequence
MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENKPCGSNMPRSHLESKLNLYNQYYDGKSGEIRSREVT
Secondary Structure (PSIPRED)
cEEEEcEEEEEEccccccccccccccccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHHccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEccEEEEccccccccccccccccccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHccccccEEEEcccc
Coil and Loop (DISEMBL)
mtvtntsvtythkgvpychvpcygalfgpqlfghgtrveshtsfgkvenkpcgsnmprshleSKLNLYnqyydgksgeirsrevt
Flexible Loop (DISEMBL)
mtvtntsvtythkgvpYCHVPCYGALFGPQLFGHGTRVESHTSfgkvenkpcgsnmprsHLESKLNLynqyydgksgeirsrevt
Low Complexity Region (SEG)
MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENKPCGSNMPRSHLESKLNLYNQYYDGKSGEIRSREVT
Disordered region (IsUnstruct)
******SVTYTHKGVPYCHVPCYGALFGPQLFGHGTRV****************************LYNQY**************
Disordered Region (DISOPRED)
****N*SVTYTHKGVPYCHVPCYGALFGPQLFGHG*************************LESKLNLYNQYYDG***********
Disordered Region (DISEMBL)
MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENKPCGSNMPRSHLESKLNLYNQYYDGKSGEIRSREVT
Disordered Region (DISPRO)
*TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENKPCGSNMPRSHLESKLNLYNQYYDGKSG*IR*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENKPCGSNMPRSHLESKLNLYNQYYDGKSGEIRSREVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
226022668	147	Ras association family member [Gryllus b	0.870	0.503	0.837	7e-30
307166384	615	Ras association domain-containing protei	0.823	0.113	0.821	4e-29
307211105	574	Ras association domain-containing protei	0.823	0.121	0.821	6e-29
332021173	573	Ras association domain-containing protei	0.823	0.122	0.821	6e-29
383859024	572	PREDICTED: uncharacterized protein LOC10	0.823	0.122	0.821	9e-29
156550307	571	PREDICTED: hypothetical protein LOC10011	0.823	0.122	0.821	1e-28
340712559	572	PREDICTED: hypothetical protein LOC10065	0.823	0.122	0.821	1e-28
350399582	572	PREDICTED: hypothetical protein LOC10074	0.823	0.122	0.821	1e-28
380021771	571	PREDICTED: uncharacterized protein LOC10	0.823	0.122	0.821	2e-28
110755943	571	PREDICTED: hypothetical protein LOC72488	0.823	0.122	0.821	2e-28

>gi|226022668|dbj|BAH36878.1| Ras association family member [Gryllus bimaculatus]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 62/74 (83%), Positives = 68/74 (91%)

Query: 12  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENKPCGSNMPRSHLESKLNLYNQY 71
           HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVEN+  G N+PRSHLESKL ++N +
Sbjct: 46  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENRSGGPNLPRSHLESKLKVFNCF 105

Query: 72  YDGKSGEIRSREVT 85
           YDG+SGEIRSREV 
Sbjct: 106 YDGRSGEIRSREVN 119

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166384|gb|EFN60521.1| Ras association domain-containing protein 2 [Camponotus floridanus]

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 60/73 (82%), Positives = 67/73 (91%), Gaps = 3/73 (4%)

Query: 12  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENKPCGSNMPRSHLESKLNLYNQY 71
           HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGK E++P   ++PRSHLESKL ++NQY
Sbjct: 46  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKKESRP---SLPRSHLESKLKVFNQY 102

Query: 72  YDGKSGEIRSREV 84
           Y+GKSG IRSREV
Sbjct: 103 YEGKSGGIRSREV 115

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211105|gb|EFN87336.1| Ras association domain-containing protein 2 [Harpegnathos saltator]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/73 (82%), Positives = 67/73 (91%), Gaps = 3/73 (4%)

Query: 12  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENKPCGSNMPRSHLESKLNLYNQY 71
           HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGK E++P   ++PRSHLESKL ++NQY
Sbjct: 46  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKKESRP---SLPRSHLESKLKVFNQY 102

Query: 72  YDGKSGEIRSREV 84
           Y+GKSG IRSREV
Sbjct: 103 YEGKSGGIRSREV 115

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021173|gb|EGI61558.1| Ras association domain-containing protein 2 [Acromyrmex echinatior]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/73 (82%), Positives = 67/73 (91%), Gaps = 3/73 (4%)

Query: 12  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENKPCGSNMPRSHLESKLNLYNQY 71
           HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGK E++P   ++PRSHLESKL ++NQY
Sbjct: 46  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKKESRP---SLPRSHLESKLKVFNQY 102

Query: 72  YDGKSGEIRSREV 84
           Y+GKSG IRSREV
Sbjct: 103 YEGKSGGIRSREV 115

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859024|ref|XP_003704998.1| PREDICTED: uncharacterized protein LOC100878529 [Megachile rotundata]

 Score =  130 bits (327), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/73 (82%), Positives = 66/73 (90%), Gaps = 3/73 (4%)

Query: 12  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENKPCGSNMPRSHLESKLNLYNQY 71
           HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGK E +P   ++PRSHLESKL ++NQY
Sbjct: 46  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKKEARP---SLPRSHLESKLKVFNQY 102

Query: 72  YDGKSGEIRSREV 84
           Y+GKSG IRSREV
Sbjct: 103 YEGKSGGIRSREV 115

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550307|ref|XP_001603424.1| PREDICTED: hypothetical protein LOC100119694 [Nasonia vitripennis]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/73 (82%), Positives = 67/73 (91%), Gaps = 3/73 (4%)

Query: 12  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENKPCGSNMPRSHLESKLNLYNQY 71
           HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGK E++   S++PRSHLE+KL L+NQY
Sbjct: 46  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKKESR---SSLPRSHLETKLKLFNQY 102

Query: 72  YDGKSGEIRSREV 84
           Y+GKSG IRSREV
Sbjct: 103 YEGKSGGIRSREV 115

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712559|ref|XP_003394824.1| PREDICTED: hypothetical protein LOC100650678 [Bombus terrestris]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/73 (82%), Positives = 66/73 (90%), Gaps = 3/73 (4%)

Query: 12  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENKPCGSNMPRSHLESKLNLYNQY 71
           HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGK E +P   ++PRSHLESKL ++NQY
Sbjct: 46  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKKEARP---SLPRSHLESKLKVFNQY 102

Query: 72  YDGKSGEIRSREV 84
           Y+GKSG IRSREV
Sbjct: 103 YEGKSGGIRSREV 115

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399582|ref|XP_003485578.1| PREDICTED: hypothetical protein LOC100742736 [Bombus impatiens]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/73 (82%), Positives = 66/73 (90%), Gaps = 3/73 (4%)

Query: 12  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENKPCGSNMPRSHLESKLNLYNQY 71
           HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGK E +P   ++PRSHLESKL ++NQY
Sbjct: 46  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKKEARP---SLPRSHLESKLKVFNQY 102

Query: 72  YDGKSGEIRSREV 84
           Y+GKSG IRSREV
Sbjct: 103 YEGKSGGIRSREV 115

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021771|ref|XP_003694730.1| PREDICTED: uncharacterized protein LOC100866811 [Apis florea]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/73 (82%), Positives = 66/73 (90%), Gaps = 3/73 (4%)

Query: 12  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENKPCGSNMPRSHLESKLNLYNQY 71
           HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGK E +P   ++PRSHLESKL ++NQY
Sbjct: 46  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKKEIRP---SLPRSHLESKLKVFNQY 102

Query: 72  YDGKSGEIRSREV 84
           Y+GKSG IRSREV
Sbjct: 103 YEGKSGGIRSREV 115

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110755943|ref|XP_001120788.1| PREDICTED: hypothetical protein LOC724888 [Apis mellifera]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/73 (82%), Positives = 66/73 (90%), Gaps = 3/73 (4%)

Query: 12  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENKPCGSNMPRSHLESKLNLYNQY 71
           HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGK E +P   ++PRSHLESKL ++NQY
Sbjct: 46  HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKKEIRP---SLPRSHLESKLKVFNQY 102

Query: 72  YDGKSGEIRSREV 84
           Y+GKSG IRSREV
Sbjct: 103 YEGKSGGIRSREV 115

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
FB|FBgn0039055	806	Rassf "Ras association family	0.858	0.090	0.721	4.9e-25
UNIPROTKB|G3PB57	77	G3PB57 "Uncharacterized protei	0.352	0.389	0.645	2.9e-07
UNIPROTKB|Q66KW9	77	crip1 "MGC85360 protein" [Xeno	0.352	0.389	0.645	7.8e-07
UNIPROTKB|F6Y6R6	77	F6Y6R6 "Uncharacterized protei	0.447	0.493	0.575	1e-06
UNIPROTKB|E3TCV8	77	CRIP1 "Cysteine-rich protein 1	0.352	0.389	0.645	1.3e-06
UNIPROTKB|E3TF98	77	CRIP1 "Cysteine-rich protein 1	0.352	0.389	0.645	1.3e-06
UNIPROTKB|G3ILM1	77	I79_024790 "Cysteine-rich prot	0.352	0.389	0.612	1.3e-06
UNIPROTKB|Q66L06	77	crip1 "MGC85263 protein" [Xeno	0.352	0.389	0.645	1.3e-06
ZFIN|ZDB-GENE-041111-1	77	crip1 "cysteine-rich protein 1	0.352	0.389	0.645	1.6e-06
UNIPROTKB|B9EPY4	89	CRIP1 "Cysteine-rich protein 1	0.352	0.337	0.645	2.1e-06

FB|FBgn0039055 Rassf "Ras association family member" [Drosophila melanogaster (taxid:7227)]

 Score = 295 (108.9 bits), Expect = 4.9e-25, P = 4.9e-25
 Identities = 57/79 (72%), Positives = 62/79 (78%)

Query:    12 HKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFG-KVENKPCGSN-----MPRSHLESKL 65
             HK VPYCHVPCYGALFGPQLFGHGTRVESH S+G K   KP G+      +PR HLESKL
Sbjct:    46 HKSVPYCHVPCYGALFGPQLFGHGTRVESHKSYGVKGAQKPTGAQANGPPLPRDHLESKL 105

Query:    66 NLYNQYYDGKSGEIRSREV 84
              +YNQ+YD KS EIRSREV
Sbjct:   106 KVYNQFYDNKSLEIRSREV 124

GO:0008270 "zinc ion binding" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009968 "negative regulation of signal transduction" evidence=IMP

GO:0010332 "response to gamma radiation" evidence=IMP

UNIPROTKB|G3PB57 G3PB57 "Uncharacterized protein" [Gasterosteus aculeatus (taxid:69293)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 20/31 (64%), Positives = 24/31 (77%)

Query:    12 HKGVPYCHVPCYGALFGPQLFGHGTRVESHT 42
             H+G PYCH PCYGA+FGP+ FG G   ESH+
Sbjct:    46 HEGKPYCHNPCYGAMFGPKGFGRGG-AESHS 75

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008301 "DNA binding, bending" evidence=ISS

GO:0010043 "response to zinc ion" evidence=ISS

GO:0042277 "peptide binding" evidence=ISS

GO:0071236 "cellular response to antibiotic" evidence=ISS

GO:0071493 "cellular response to UV-B" evidence=ISS

UNIPROTKB|Q66KW9 crip1 "MGC85360 protein" [Xenopus laevis (taxid:8355)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 20/31 (64%), Positives = 24/31 (77%)

Query:    12 HKGVPYCHVPCYGALFGPQLFGHGTRVESHT 42
             H+G PYC+ PCYGALFGP+ FG G   ESH+
Sbjct:    46 HEGKPYCNQPCYGALFGPKGFGRGG-TESHS 75

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008301 "DNA binding, bending" evidence=ISS

GO:0010043 "response to zinc ion" evidence=ISS

GO:0042277 "peptide binding" evidence=ISS

GO:0071236 "cellular response to antibiotic" evidence=ISS

GO:0071493 "cellular response to UV-B" evidence=ISS

UNIPROTKB|F6Y6R6 F6Y6R6 "Uncharacterized protein" [Ornithorhynchus anatinus (taxid:9258)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 23/40 (57%), Positives = 28/40 (70%)

Query:     4 TNTSVTYT-HKGVPYCHVPCYGALFGPQLFGHGTRVESHT 42
             T TS ++  H+G PYC+ PCY ALFGP+ FG G   ESHT
Sbjct:    37 TLTSGSHAEHEGKPYCNHPCYAALFGPKGFGRGG-AESHT 75

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008301 "DNA binding, bending" evidence=ISS

GO:0010043 "response to zinc ion" evidence=ISS

GO:0042277 "peptide binding" evidence=ISS

GO:0071236 "cellular response to antibiotic" evidence=ISS

GO:0071493 "cellular response to UV-B" evidence=ISS

UNIPROTKB|E3TCV8 CRIP1 "Cysteine-rich protein 1" [Ictalurus furcatus (taxid:66913)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 20/31 (64%), Positives = 23/31 (74%)

Query:    12 HKGVPYCHVPCYGALFGPQLFGHGTRVESHT 42
             H+G PYC+ PCY ALFGP+ FG G   ESHT
Sbjct:    46 HEGKPYCNKPCYSALFGPKGFGRGG-TESHT 75

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008301 "DNA binding, bending" evidence=ISS

GO:0010043 "response to zinc ion" evidence=ISS

GO:0042277 "peptide binding" evidence=ISS

GO:0071236 "cellular response to antibiotic" evidence=ISS

GO:0071493 "cellular response to UV-B" evidence=ISS

UNIPROTKB|E3TF98 CRIP1 "Cysteine-rich protein 1" [Ictalurus punctatus (taxid:7998)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 20/31 (64%), Positives = 23/31 (74%)

Query:    12 HKGVPYCHVPCYGALFGPQLFGHGTRVESHT 42
             H+G PYC+ PCY ALFGP+ FG G   ESHT
Sbjct:    46 HEGKPYCNKPCYSALFGPKGFGRGG-AESHT 75

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008301 "DNA binding, bending" evidence=ISS

GO:0010043 "response to zinc ion" evidence=ISS

GO:0042277 "peptide binding" evidence=ISS

GO:0071236 "cellular response to antibiotic" evidence=ISS

GO:0071493 "cellular response to UV-B" evidence=ISS

UNIPROTKB|G3ILM1 I79_024790 "Cysteine-rich protein 1" [Cricetulus griseus (taxid:10029)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query:    12 HKGVPYCHVPCYGALFGPQLFGHGTRVESHT 42
             H+G PYC+ PCY A+FGP+ FG G   ESHT
Sbjct:    46 HEGKPYCNHPCYSAMFGPKAFGRGG-AESHT 75

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008301 "DNA binding, bending" evidence=ISS

GO:0010043 "response to zinc ion" evidence=ISS

GO:0042277 "peptide binding" evidence=ISS

GO:0071236 "cellular response to antibiotic" evidence=ISS

GO:0071493 "cellular response to UV-B" evidence=ISS

UNIPROTKB|Q66L06 crip1 "MGC85263 protein" [Xenopus laevis (taxid:8355)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 20/31 (64%), Positives = 23/31 (74%)

Query:    12 HKGVPYCHVPCYGALFGPQLFGHGTRVESHT 42
             H G PYC+ PCYGALFGP+ FG G   ESH+
Sbjct:    46 HDGKPYCNQPCYGALFGPKGFGRGG-AESHS 75

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008301 "DNA binding, bending" evidence=ISS

GO:0010043 "response to zinc ion" evidence=ISS

GO:0042277 "peptide binding" evidence=ISS

GO:0071236 "cellular response to antibiotic" evidence=ISS

GO:0071493 "cellular response to UV-B" evidence=ISS

ZFIN|ZDB-GENE-041111-1 crip1 "cysteine-rich protein 1" [Danio rerio (taxid:7955)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 20/31 (64%), Positives = 23/31 (74%)

Query:    12 HKGVPYCHVPCYGALFGPQLFGHGTRVESHT 42
             H+G PYC+ PCY ALFGP+ FG G   ESHT
Sbjct:    46 HEGKPYCNNPCYAALFGPKGFGRGG-TESHT 75

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0042277 "peptide binding" evidence=ISS

GO:0071236 "cellular response to antibiotic" evidence=ISS

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0008301 "DNA binding, bending" evidence=ISS

GO:0010043 "response to zinc ion" evidence=ISS

GO:0071493 "cellular response to UV-B" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|B9EPY4 CRIP1 "Cysteine-rich protein 1" [Salmo salar (taxid:8030)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query:    12 HKGVPYCHVPCYGALFGPQLFGHGTRVESHT 42
             H G PYC+ PCY ALFGP+ FG G   ESHT
Sbjct:    57 HDGKPYCNSPCYSALFGPKGFGRGG-AESHT 86

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008301 "DNA binding, bending" evidence=ISS

GO:0010043 "response to zinc ion" evidence=ISS

GO:0042277 "peptide binding" evidence=ISS

GO:0071236 "cellular response to antibiotic" evidence=ISS

GO:0071493 "cellular response to UV-B" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	85
KOG1700|consensus	200		97.77
PF00412	58	LIM: LIM domain; InterPro: IPR001781 Zinc finger (	95.64
KOG1700|consensus	200		94.71

>KOG1700|consensus

Probab=97.77  E-value=8.9e-06  Score=60.06  Aligned_cols=35  Identities=40%  Similarity=0.635  Sum_probs=33.0

Q ss_pred             ccccccccceecCeeeecCCccccccCCccccCCcc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTR   37 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~~   37 (85)
                      |+|+++++++|++++|| +.||.+.|||+|+|++.+
T Consensus        42 k~l~~~~~~~~e~~~yc-~~~~~~~~~~~~~~~~~~   76 (200)
T KOG1700|consen   42 KTLTLSGYSEHEGVPYC-KNCHVAQFGPKGGGFGKG   76 (200)
T ss_pred             ccccccccccccccccc-ccchHhhhCccccccccc
Confidence            78999999999999999 699999999999999974

>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.64  E-value=0.0032  Score=36.33  Aligned_cols=25  Identities=36%  Similarity=0.760  Sum_probs=21.8

Q ss_pred             ccccccccceecCeeeecCCcccccc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALF   27 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klF   27 (85)
                      +.|.++.+.+.+++||| +.||.++|
T Consensus        34 ~~l~~~~~~~~~~~~~C-~~c~~~~f   58 (58)
T PF00412_consen   34 KPLNDGDFYEKDGKPYC-KDCYQKRF   58 (58)
T ss_dssp             CBTTTSSEEEETTEEEE-HHHHHHHT
T ss_pred             CccCCCeeEeECCEEEC-HHHHhhhC
Confidence            46778889999999999 69999987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....

>KOG1700|consensus

Probab=94.71  E-value=0.014  Score=43.19  Aligned_cols=35  Identities=17%  Similarity=0.212  Sum_probs=32.4

Q ss_pred             ccccccccceecCeeeecCCccccccCCccccCCc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGT   36 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~   36 (85)
                      +.|++++.+++++.+||.+.|++.++|+.+++.+.
T Consensus       143 ~~ls~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  177 (200)
T KOG1700|consen  143 KKLSPKNYAALEGVLYCKHHFAQLFKGKGNYNEGF  177 (200)
T ss_pred             cccCCcchhhcCCccccchhhheeecCCCcccccc
Confidence            57999999999999999889999999999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	85
1iml_A	76	Cysteine Rich Intestinal Protein, Nmr, 48 Structure		2e-04

>pdb|1IML|A Chain A, Cysteine Rich Intestinal Protein, Nmr, 48 Structures Length = 76

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 12 HKGVPYCHVPCYGALFGPQLFGHGTRVESHT 42
          H+G PYC+ PCY A+FGP+ FG G   ESHT
Sbjct: 45 HEGKPYCNHPCYSAMFGPKGFGRGG-AESHT 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	85
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	1e-06

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 41.2 bits (97), Expect = 1e-06
 Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 10 YTHKGVPYCHVPCYGALFGPQLFGHGTRVESHT 42
            H+G PYC+ PCY A+FGP+ FG G   ESHT
Sbjct: 43 AEHEGKPYCNHPCYSAMFGPKGFGRG-GAESHT 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	85
1a7i_A	81	QCRP2 (LIM1); LIM domain containing proteins, meta	98.35
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	98.16
2cu8_A	76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	98.03
1x64_A	89	Alpha-actinin-2 associated LIM protein; LIM domain	97.92
1x62_A	79	C-terminal LIM domain protein 1; PDZ and LIM domai	97.85
1nyp_A	66	Pinch protein; LIM domain, protein recognition, ce	97.7
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	97.61
1x4l_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	97.56
2d8y_A	91	Eplin protein; LIM domain, epithelial protein LOST	97.55
2cur_A	69	Skeletal muscle LIM-protein 1; four and A half LIM	97.52
2dar_A	90	PDZ and LIM domain protein 5; enigma homolog prote	97.51
2d8z_A	70	Four and A half LIM domains 2; skeletal muscle LIM	97.49
1x68_A	76	FHL5 protein; four-and-A-half LIM protein 5, zinc	97.49
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	97.48
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	97.47
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	97.46
1x4k_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	97.42
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	97.4
2dj7_A	80	Actin-binding LIM protein 3; LIM domain, Zn bindin	97.37
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	97.31
1j2o_A	114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	97.28
2cuq_A	80	Four and A half LIM domains 3; structural genomics	97.16
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	97.11
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	97.1
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	97.08
2d8x_A	70	Protein pinch; LIM domain, pinch protein, structur	97.07
2l3k_A	123	Rhombotin-2, linker, LIM domain-binding protein 1;	97.0
2cor_A	79	Pinch protein; LIM domain, particularly interestin	96.91
3f6q_B	72	LIM and senescent cell antigen-like-containing dom	96.83
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	96.82
2dlo_A	81	Thyroid receptor-interacting protein 6; LIM domain	96.7
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	96.64
2co8_A	82	NEDD9 interacting protein with calponin homology a	96.39
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	96.31
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	95.96
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	95.5
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	95.4
2iyb_E	65	Testin, TESS, TES; LIM domain, SH3-binding, tumour	95.36
1x6a_A	81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	95.19
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	94.89
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	94.67
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	94.49
1wig_A	73	KIAA1808 protein; LIM domain, zinc finger, metal-b	94.35
2cuq_A	80	Four and A half LIM domains 3; structural genomics	93.12
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	92.52
2egq_A	77	FHL1 protein; LIM domain, four and A half LIM doma	92.28
1v6g_A	81	Actin binding LIM protein 2; LIM domain, zinc bind	91.24
1x6a_A	81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	90.23
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	88.59
2dlo_A	81	Thyroid receptor-interacting protein 6; LIM domain	85.33
1v6g_A	81	Actin binding LIM protein 2; LIM domain, zinc bind	84.95
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	84.53
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	80.93

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A

Probab=98.35  E-value=7.8e-08  Score=58.65  Aligned_cols=36  Identities=28%  Similarity=0.697  Sum_probs=24.0

Q ss_pred             ccccccccceecCeeeecCCccccccCCccccCCccc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRV   38 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~~~   38 (85)
                      +.|+.+.+.++++++|| +.||.++|+|+++|.|..+
T Consensus        42 ~~L~~~~~~~~~~~~yC-~~cy~~~f~~~c~gcg~g~   77 (81)
T 1a7i_A           42 KNLDSTTVAIHDAEVYC-KSCYGKKYGPKGYGYGQGA   77 (81)
T ss_dssp             CEECSSCCEEETTEEEC-SHHHHHHCC----------
T ss_pred             CCCCCCCeEeeCCEEEC-HHHHHHHhCCcccccCCcc
Confidence            56888889999999999 7999999999999998644

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3

Probab=98.16  E-value=7.3e-07  Score=53.68  Aligned_cols=40  Identities=48%  Similarity=0.951  Sum_probs=34.6

Q ss_pred             ccccccccceecCeeeecC-CccccccCCccccCCccceeeee
Q psy16163          2 TVTNTSVTYTHKGVPYCHV-PCYGALFGPQLFGHGTRVESHTS   43 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k-~CY~klFGPkG~G~G~~~~sh~~   43 (85)
                      +.|+.+.+.+++++||| + +||.++|||++.|-|+ +.++++
T Consensus        35 ~~L~~~~~~~~~g~~yC-~~~cy~~~f~~~C~~C~~-~~~~~~   75 (76)
T 1iml_A           35 KTLTSGGHAEHEGKPYC-NHPCYSAMFGPKGFGRGG-AESHTF   75 (76)
T ss_dssp             CBCCTTTEEEETTEEEE-TTTHHHHHSSCCCSSCCC-SSSCCC
T ss_pred             ccCCCCceECcCCeEee-CHHHHHHHhCccCCCcCC-ceeeee
Confidence            56888889999999999 7 7999999999999987 666653

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=98.03  E-value=1.5e-06  Score=52.25  Aligned_cols=31  Identities=32%  Similarity=0.729  Sum_probs=27.8

Q ss_pred             ccccccccceecCeeeecC-CccccccCCcccc
Q psy16163          2 TVTNTSVTYTHKGVPYCHV-PCYGALFGPQLFG   33 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k-~CY~klFGPkG~G   33 (85)
                      +.|+...+.+++++||| + +||.++|||+++|
T Consensus        44 ~~L~~~~~~~~~g~~yC-~~~cy~~~f~~kc~g   75 (76)
T 2cu8_A           44 KTLTPGGHAEHDGKPFC-HKPCYATLFGSGPSS   75 (76)
T ss_dssp             CBCCTTSCEEETTEEEC-TTTHHHHHSCSSCSC
T ss_pred             CccCCCceEeECCEEec-chHHHHHhcccccCC
Confidence            56888889999999999 7 7999999999875

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=97.92  E-value=1.8e-06  Score=53.58  Aligned_cols=31  Identities=16%  Similarity=0.074  Sum_probs=27.8

Q ss_pred             ccccccccceecCeeeecCCccccccCCcccc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFG   33 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G   33 (85)
                      +.|+.+.+.++++++|| +.||.++|+|+|.|
T Consensus        59 ~~L~~~~~~~~~g~~yC-~~~y~~~f~p~~~g   89 (89)
T 1x64_A           59 LNLKQKGYFFVEGELYC-ETHARARTSGPSSG   89 (89)
T ss_dssp             CCTTTSCCEEETTEEEC-HHHHHHHSSSCCCC
T ss_pred             CCCCCCCeEeECCEEEC-HHHHHHHhCCCCCC
Confidence            56788889999999999 79999999999975

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=97.85  E-value=1e-06  Score=53.63  Aligned_cols=31  Identities=13%  Similarity=0.055  Sum_probs=26.9

Q ss_pred             ccccccccceecCeeeecCCccccccCCcccc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFG   33 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G   33 (85)
                      +.|+...+.++++++|| +.||.++|+|+|.|
T Consensus        49 ~~L~~~~~~~~~g~~yC-~~cy~~~~~p~g~g   79 (79)
T 1x62_A           49 TNLKQKGHFFVEDQIYC-EKHARERVSGPSSG   79 (79)
T ss_dssp             CCHHHHCCEESSSCEEC-HHHHHHHHSSCCCC
T ss_pred             CCCCCCCeEeECCEEEC-HHHHHHHhCCCCCC
Confidence            45666778899999999 79999999999865

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B

Probab=97.70  E-value=6.3e-06  Score=48.17  Aligned_cols=28  Identities=32%  Similarity=0.587  Sum_probs=25.4

Q ss_pred             ccccccccceecCeeeecCCccccccCCc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQ   30 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPk   30 (85)
                      +.|+...+.++++++|| +.||.++||||
T Consensus        39 ~~L~~~~~~~~~g~~yC-~~~y~~~f~~k   66 (66)
T 1nyp_A           39 KPFLGHRHYERKGLAYC-ETHYNQLFGDV   66 (66)
T ss_dssp             CBCSSSCCEEETTEEEC-HHHHHHHCSCC
T ss_pred             CCCCCCceEeECCcEEC-HHHHHHHhCCC
Confidence            46888889999999999 79999999997

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=97.61  E-value=9.8e-06  Score=49.01  Aligned_cols=29  Identities=24%  Similarity=0.398  Sum_probs=26.5

Q ss_pred             ccccccccceecCeeeecCCccccccCCcc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL   31 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG   31 (85)
                      +.|+.+.+.+++++||| +.||.++|||+|
T Consensus        51 ~~L~~~~~~~~~~~~yC-~~cy~~~f~~~~   79 (82)
T 1x63_A           51 QVIGTGSFFPKGEDFYC-VTCHETKFASGP   79 (82)
T ss_dssp             CCCTTSCEEEETTEEEE-HHHHHHHTSCCC
T ss_pred             CccCCCccEeeCCEEEC-HHHHHHHhCCCC
Confidence            56888889999999999 799999999997

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=97.56  E-value=1.5e-05  Score=47.28  Aligned_cols=29  Identities=17%  Similarity=0.174  Sum_probs=25.8

Q ss_pred             ccccccccceecCeeeecCCccccccCCcc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL   31 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG   31 (85)
                      +.|+...+.+++++||| +.||.++|||+.
T Consensus        43 ~~L~~~~f~~~~g~~yC-~~c~~~~~~p~~   71 (72)
T 1x4l_A           43 LSLVGRGFLTERDDILC-PDCGKDISGPSS   71 (72)
T ss_dssp             CBCTTSCCEECSSSEEC-HHHHHTCCCSSC
T ss_pred             CcCCCCccEeECCEEEC-hhHcCcccCCCC
Confidence            46787888999999999 699999999985

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=97.55  E-value=1.1e-05  Score=50.17  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=26.6

Q ss_pred             ccccccccceecCeeeecCCccccccCCcc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL   31 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG   31 (85)
                      +.|+.+.+.++++++|| +.||.++|+|++
T Consensus        50 ~~L~~~~~~~~~g~~yC-~~~y~~~f~~kc   78 (91)
T 2d8y_A           50 NKLSLGTYASLHGRIYC-KPHFNQLFKSKG   78 (91)
T ss_dssp             CBCCTTTCCCSSSCCCC-HHHHHHHSCCCS
T ss_pred             CCCCCCCcEeECCEEEC-HHHHHHHhCCCc
Confidence            56888889999999999 799999999998

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=97.52  E-value=1.3e-05  Score=47.18  Aligned_cols=31  Identities=19%  Similarity=0.296  Sum_probs=27.1

Q ss_pred             ccccccccceecCeeeecCCccccccCCcccc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFG   33 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G   33 (85)
                      +.|+...+.+++++||| +.||.++|||+--|
T Consensus        39 ~~L~~~~~~~~~~~~yC-~~cy~~~f~~~C~g   69 (69)
T 2cur_A           39 KKLAGQRFTAVEDQYYC-VDCYKNFVSGPSSG   69 (69)
T ss_dssp             CBCTTSCEEECSSCEEE-HHHHHHHHTCSCCC
T ss_pred             CCCCCCccEeECCEEEC-HHHhHHHhcCCCCC
Confidence            56787788999999999 79999999999654

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=97.51  E-value=1.5e-05  Score=49.46  Aligned_cols=29  Identities=24%  Similarity=0.426  Sum_probs=26.2

Q ss_pred             ccccccccceecCeeeecCCccccccCCcc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL   31 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG   31 (85)
                      +.|+...+.+++++||| +.||.++|||++
T Consensus        59 ~~L~~~~f~~~~g~~yC-~~cy~~~f~~~c   87 (90)
T 2dar_A           59 NTMAYIGFVEEKGALYC-ELCYEKFFASGP   87 (90)
T ss_dssp             CBCSSSCBEESSSCEEC-HHHHHHHTSCCC
T ss_pred             CCCCCCEeEeECCEEEC-HHHHHHHcCCCC
Confidence            56888889999999999 799999999996

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=97.49  E-value=1.6e-05  Score=46.71  Aligned_cols=30  Identities=13%  Similarity=0.355  Sum_probs=26.8

Q ss_pred             ccccccccceecCeeeecCCccccccCCccc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLF   32 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~   32 (85)
                      +.|+...+.+++++||| +.||.++|+|+.-
T Consensus        39 ~~L~~~~~~~~~~~~yC-~~cy~~~f~~~c~   68 (70)
T 2d8z_A           39 KQLSGQRFTARDDFAYC-LNCFCDLYASGPS   68 (70)
T ss_dssp             CBCTTSCCEESSSSEEC-HHHHHHHTCCCCT
T ss_pred             CcCCcCceEeeCCeEEC-HHHHHHHhccccC
Confidence            56888889999999999 7999999999974

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=97.49  E-value=6.3e-05  Score=45.15  Aligned_cols=29  Identities=10%  Similarity=0.040  Sum_probs=25.9

Q ss_pred             ccccccccceecCeeeecCCccccccCCcc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL   31 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG   31 (85)
                      +.|+...+.+++++||| +.||.++|||+=
T Consensus        43 ~~L~~~~f~~~~g~~yC-~~cy~~~f~~~C   71 (76)
T 1x68_A           43 VSLVGKGFLTQNKEIFC-QKCGSGMDTDIS   71 (76)
T ss_dssp             CBCSSSCEEEETTEEEE-TTTTCCCCCCSS
T ss_pred             CcCCCCceEeECCEEEC-HHHhhhhhCCcC
Confidence            56787789999999999 799999999984

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=97.48  E-value=2e-05  Score=46.42  Aligned_cols=29  Identities=31%  Similarity=0.628  Sum_probs=26.2

Q ss_pred             ccccccccceecCeeeecCCccccccCCcc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL   31 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG   31 (85)
                      +.|+.+.+.+++++||| +.||.++|||+.
T Consensus        41 ~~L~~~~~~~~~~~~yC-~~cy~~~f~~~C   69 (72)
T 1wyh_A           41 QPLGSRSFVPDKGAHYC-VPCYENKFASGP   69 (72)
T ss_dssp             CBTTTSCEEEETTEEEE-HHHHHHHTSCCC
T ss_pred             CcCCCCccCCcCCeEEC-HHHHHHHccCcC
Confidence            56888889999999999 799999999996

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=97.47  E-value=1.8e-05  Score=47.16  Aligned_cols=28  Identities=25%  Similarity=0.492  Sum_probs=25.5

Q ss_pred             ccccccccceecCeeeecCCccccccCCc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQ   30 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPk   30 (85)
                      +.|+.+.+.+++|++|| +.||.++|||+
T Consensus        47 ~~L~~~~~~~~~g~~yC-~~~y~~~f~~~   74 (77)
T 1g47_A           47 QQFPEGLFYEFEGRKYC-EHDFQMLFAPC   74 (77)
T ss_dssp             CCCGGGCSEEETTEEEC-HHHHHHHCCCC
T ss_pred             CCCCCCCeEeECCeEeC-HHHHHHHhhcc
Confidence            56888889999999999 79999999997

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A

Probab=97.46  E-value=2.9e-05  Score=54.01  Aligned_cols=34  Identities=32%  Similarity=0.708  Sum_probs=30.8

Q ss_pred             ccccccccceecCeeeecCCccccccCCccccCCc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGT   36 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~   36 (85)
                      +.|+.+.+.+++++||| +.||.++|||+++|.|.
T Consensus       150 ~~L~~~~~~~~~g~~yC-~~cy~~~f~~kc~~C~~  183 (192)
T 1b8t_A          150 KSLESTTLADKDGEIYC-KGCYAKNFGPKGFGFGQ  183 (192)
T ss_dssp             CBCCSSSEEEETTEEEE-HHHHHHHTCCCCCCCCC
T ss_pred             CCCCCCcccccCCEEeC-HHHHHHhcCCcCCCCCC
Confidence            56888889999999999 79999999999998875

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=97.42  E-value=2.5e-05  Score=46.00  Aligned_cols=29  Identities=21%  Similarity=0.432  Sum_probs=25.9

Q ss_pred             ccccccccceecCeeeecCCccccccCCcc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL   31 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG   31 (85)
                      +.|+.+.+.+++++||| +.||.++|+|+-
T Consensus        41 ~~L~~~~~~~~~~~~yC-~~cy~~~f~~~C   69 (72)
T 1x4k_A           41 QPIGTKSFIPKDNQNFC-VPCYEKQHASGP   69 (72)
T ss_dssp             CCCCSSSEEEETTEEEE-HHHHHHHTSSCC
T ss_pred             CccCCCccCccCCeEEC-HHHHhHHhCCCC
Confidence            56888889999999999 799999999973

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A

Probab=97.40  E-value=3.4e-05  Score=53.65  Aligned_cols=34  Identities=29%  Similarity=0.665  Sum_probs=30.5

Q ss_pred             ccccccccceecCeeeecCCccccccCCccccCCc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGT   36 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~   36 (85)
                      +.|+.+.+.++++++|| +.||.++|+|+++|.|.
T Consensus        42 ~~L~~~~~~~~~g~~yC-~~cy~~~f~~~c~~c~~   75 (192)
T 1b8t_A           42 KNLDSTTVAVHGDEIYC-KSCYGKKYGPKGKGKGM   75 (192)
T ss_dssp             CBCCSSSEEEETTEEEE-HHHHHHHHSCCCCCCCC
T ss_pred             CcCCCCeeEecCCEeeC-hhhhHhhcCcccccccc
Confidence            56888889999999999 79999999999988775

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=97.37  E-value=5.2e-05  Score=46.57  Aligned_cols=28  Identities=32%  Similarity=0.606  Sum_probs=24.7

Q ss_pred             ccccccccceecCeeeecCCccccccCCcc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL   31 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG   31 (85)
                      +.|+ +.+.+++++||| +.||.++|||+.
T Consensus        50 ~~L~-~~~~~~~g~~yC-~~~y~~~fg~~C   77 (80)
T 2dj7_A           50 VILT-GEYISKDGVPYC-ESDYHAQFGSGP   77 (80)
T ss_dssp             CBCS-SCCEEETTEEEC-TTHHHHHTTCCS
T ss_pred             CCcC-CCeEEECCEEEC-HHHHHHHcCCCC
Confidence            4676 578999999999 799999999996

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.31  E-value=0.0001  Score=44.52  Aligned_cols=28  Identities=14%  Similarity=0.258  Sum_probs=25.3

Q ss_pred             ccccccccceecCeeeecCCccccccCCc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQ   30 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPk   30 (85)
                      +.|+...+.+++++||| +.||.++|||+
T Consensus        51 ~~L~~~~f~~~~~~~~C-~~c~~~~~~~~   78 (82)
T 2ehe_A           51 RSLADEPFTCQDSELLC-NDCYCSAFSSG   78 (82)
T ss_dssp             CBCSSCCEEEETTEEEE-TTTSSCCGGGS
T ss_pred             CccCCCccEeeCCEEEC-HHHHhhhcCCC
Confidence            56787888999999999 79999999997

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=97.28  E-value=3.1e-05  Score=50.05  Aligned_cols=33  Identities=18%  Similarity=0.057  Sum_probs=27.8

Q ss_pred             ccccc--cccceecCeeeecCCccccccCCccccCC
Q psy16163          2 TVTNT--SVTYTHKGVPYCHVPCYGALFGPQLFGHG   35 (85)
Q Consensus         2 K~Lds--g~~aehdgk~YC~k~CY~klFGPkG~G~G   35 (85)
                      +.|+.  ..+.+++++||| +.||.++|||++.+..
T Consensus        38 ~~L~~~g~~~~~~~g~~yC-~~~y~~~f~~~c~~c~   72 (114)
T 1j2o_A           38 CRLGEVGRRLYYKLGRKLC-RRDYLRLGGSGGHMGS   72 (114)
T ss_dssp             SCCCCSSSCCCCBTTBCCC-HHHHHHHHTSCCSSCB
T ss_pred             CchhcCCCeeEEECCeeec-hHHHHHHhCcccCcCC
Confidence            45764  378999999999 7999999999987664

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=97.16  E-value=6.5e-05  Score=45.13  Aligned_cols=29  Identities=31%  Similarity=0.620  Sum_probs=25.7

Q ss_pred             ccccccccceecCeeeecCCccccccCCcc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL   31 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG   31 (85)
                      +.|+...+.+++++||| +.||.++|||+-
T Consensus        49 ~~L~~~~~~~~~~~~yC-~~cy~~~f~~~c   77 (80)
T 2cuq_A           49 TPLAGQQFTSRDEDPYC-VACFGELFASGP   77 (80)
T ss_dssp             CBCTTCCEEECSSSEEE-HHHHHHHTTCST
T ss_pred             CcCCCCeeEeECCEEEC-HHHHHHHcCCCC
Confidence            56777789999999999 799999999984

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B

Probab=97.11  E-value=0.00019  Score=49.77  Aligned_cols=35  Identities=9%  Similarity=-0.029  Sum_probs=22.0

Q ss_pred             cccccc-ccceecCeeeecCCccccccCCccccCCcc
Q psy16163          2 TVTNTS-VTYTHKGVPYCHVPCYGALFGPQLFGHGTR   37 (85)
Q Consensus         2 K~Ldsg-~~aehdgk~YC~k~CY~klFGPkG~G~G~~   37 (85)
                      +.|+++ .+.++++++|| +.||.++|+|+++++|+.
T Consensus       105 ~~L~~g~~f~~~~g~~yC-~~c~~~~~~~~~~~~g~~  140 (188)
T 1rut_X          105 NRLVPGDRFHYINGSLFC-EHDRPTALINGHLNSGGS  140 (188)
T ss_dssp             CBCCTTCEEEEETTEEEE-GGGCCTTTC---------
T ss_pred             CCCCCCCeEEEECCeEEC-HHHHHHHhcccccccCCC
Confidence            457654 47899999999 799999999999999863

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3

Probab=97.10  E-value=0.00013  Score=45.35  Aligned_cols=34  Identities=12%  Similarity=0.058  Sum_probs=29.4

Q ss_pred             ccccccccceecCeeeecCCccccccCCccccCCc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGT   36 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~   36 (85)
                      +.|+...+.++++++|| +.||.++|+|+..+=+.
T Consensus        41 ~~L~~~~~~~~~g~~yC-~~cy~~~~~~~C~~C~~   74 (101)
T 2cup_A           41 HPLANETFVAKDNKILC-NKCTTREDSPKCKGCFK   74 (101)
T ss_dssp             CCTTSSCCEEETTEEEC-HHHHTTCCCCBCSSSCC
T ss_pred             CCCCcCeeECcCCEEEC-hhHhhhhcCCccccCCC
Confidence            56777789999999999 79999999999876654

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=97.08  E-value=7.3e-05  Score=44.89  Aligned_cols=28  Identities=25%  Similarity=0.394  Sum_probs=25.5

Q ss_pred             ccccccccceecCeeeecCCccccccCCc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQ   30 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPk   30 (85)
                      +.|+.+.+.+++++||| +.||.++|||+
T Consensus        49 ~~L~~~~~~~~~~~~yC-~~~y~~~f~~~   76 (80)
T 1x3h_A           49 TSFSTGSFFELDGRPFC-ELHYHHRRGSG   76 (80)
T ss_dssp             CBSCSSCCEESSSCEEC-HHHHHHHHSSS
T ss_pred             CCCCCCcEEeECCEEEC-HHHHHHHcCCC
Confidence            56888889999999999 79999999997

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=97.07  E-value=9.1e-05  Score=43.55  Aligned_cols=29  Identities=17%  Similarity=0.179  Sum_probs=25.9

Q ss_pred             ccccccccceecCeeeecCCccccccCCcc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL   31 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG   31 (85)
                      +.|+.+.+.++++++|| +.||.++|+|+.
T Consensus        39 ~~L~~~~f~~~~g~~yC-~~c~~~~~~~~~   67 (70)
T 2d8x_A           39 EVLADIGFVKNAGRHLC-RPCHNREKASGP   67 (70)
T ss_dssp             CBCSSSCCEEETTEEEC-HHHHHHHHCCCS
T ss_pred             CcCCCCccEeECCeEEC-HHHhhhhcCCCC
Confidence            56888889999999999 799999999974

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=96.91  E-value=0.0002  Score=43.62  Aligned_cols=27  Identities=22%  Similarity=0.413  Sum_probs=23.0

Q ss_pred             ccccccccceecCeeeecCCccccccCCc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQ   30 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPk   30 (85)
                      +.|+...+ +++++||| +.||.++|+|.
T Consensus        49 ~~L~~~~f-~~~g~~yC-~~cy~~~f~p~   75 (79)
T 2cor_A           49 KELTADAR-ELKGELYC-LPCHDKMGVSG   75 (79)
T ss_dssp             CBCCTTCE-EETTEEEC-HHHHHTTSCCS
T ss_pred             CccCCCCE-eECCEEeC-HHHHHHhCCCC
Confidence            46776655 89999999 79999999996

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B

Probab=96.83  E-value=0.00018  Score=41.75  Aligned_cols=26  Identities=23%  Similarity=0.464  Sum_probs=23.1

Q ss_pred             ccccccccceecCeeeecCCccccccC
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFG   28 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFG   28 (85)
                      +.|+.+.+.+++|+||| +.||.++||
T Consensus        47 ~~L~~~~~~~~~g~~yC-~~~y~~lf~   72 (72)
T 3f6q_B           47 QQFPEGLFYEFEGRKYC-EHDFQMLFA   72 (72)
T ss_dssp             CCCGGGCCEEETTEEEC-HHHHHHHTC
T ss_pred             CCCCCCCeEeECCeEeC-HHHHHHhhC
Confidence            46788888999999999 799999997

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}

Probab=96.82  E-value=0.00022  Score=46.06  Aligned_cols=30  Identities=17%  Similarity=0.316  Sum_probs=26.3

Q ss_pred             ccccccccceecCeeeecCCccccccCCccc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLF   32 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~   32 (85)
                      +.|+...+.++||+||| +.||.++|+|+=-
T Consensus        38 ~~L~~~~f~~~~g~~yC-~~cy~~~~~~~C~   67 (126)
T 2xqn_T           38 SILAGEIYVMVNDKPVC-KPCYVKNHAVVCQ   67 (126)
T ss_dssp             CBCTTSEEEEETTEEEE-HHHHHHHSCCBCT
T ss_pred             CCCCcCEEEeECCEEec-hHHhCcCcCccCc
Confidence            56887789999999999 7999999999843

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=96.70  E-value=0.00024  Score=42.86  Aligned_cols=28  Identities=7%  Similarity=0.026  Sum_probs=23.0

Q ss_pred             cccccccccee-cCeeeecCCccccccCCc
Q psy16163          2 TVTNTSVTYTH-KGVPYCHVPCYGALFGPQ   30 (85)
Q Consensus         2 K~Ldsg~~aeh-dgk~YC~k~CY~klFGPk   30 (85)
                      +.|+...+... +++||| +.||.++|||+
T Consensus        49 ~~L~~~~f~~~~~g~~yC-~~cy~~~f~~~   77 (81)
T 2dlo_A           49 RGLDGIPFTVDATSQIHC-IEDFHRKFASG   77 (81)
T ss_dssp             CBCTTSCEECCTTCCCEE-HHHHHHHTTSS
T ss_pred             CccCCCeeEECCCCEEEC-HHHHHHHhcCc
Confidence            46776666655 799999 79999999997

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=96.64  E-value=0.0003  Score=45.82  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=26.1

Q ss_pred             cccc--ccccceecCeeeecCCccccccCCccccCC
Q psy16163          2 TVTN--TSVTYTHKGVPYCHVPCYGALFGPQLFGHG   35 (85)
Q Consensus         2 K~Ld--sg~~aehdgk~YC~k~CY~klFGPkG~G~G   35 (85)
                      +.|+  ...+.+++++||| +.||.++|+|+|...+
T Consensus        40 ~~L~~~~~~~~~~~g~~yC-~~cy~~~f~~~~~C~~   74 (122)
T 1m3v_A           40 AQLGDIGTSSYTKSGMILC-RNDYIRLFGNSGAGGS   74 (122)
T ss_dssp             CCTTTSEECCEEETTEEEC-HHHHHHHHCCCCSSSC
T ss_pred             CcccccCCeEEEECCeeec-HHHHHHHcCCCCcccc
Confidence            3464  2468899999999 7999999999765544

>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=96.39  E-value=0.0012  Score=40.26  Aligned_cols=27  Identities=11%  Similarity=-0.009  Sum_probs=23.1

Q ss_pred             ccccccccc--eecCeeeecCCccccccCC
Q psy16163          2 TVTNTSVTY--THKGVPYCHVPCYGALFGP   29 (85)
Q Consensus         2 K~Ldsg~~a--ehdgk~YC~k~CY~klFGP   29 (85)
                      +.|+.+.+.  ++|+++|| +.||.++|.+
T Consensus        50 ~~L~~~~~~~~~~~g~~yC-~~~y~~~~~~   78 (82)
T 2co8_A           50 ATLWPGGYEQHPGDGHFYC-LQHLPQTDSG   78 (82)
T ss_dssp             CBCCTTSEECCTTTCCCEE-TTTCCCCCCC
T ss_pred             CCcCCCceeEeCcCCEEEC-hHHHHhhhcC
Confidence            568888877  57999999 7999999976

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A

Probab=96.31  E-value=0.00051  Score=44.47  Aligned_cols=29  Identities=3%  Similarity=-0.308  Sum_probs=24.2

Q ss_pred             cccccc-ccceecCeeeecCCccccccCCcc
Q psy16163          2 TVTNTS-VTYTHKGVPYCHVPCYGALFGPQL   31 (85)
Q Consensus         2 K~Ldsg-~~aehdgk~YC~k~CY~klFGPkG   31 (85)
                      +.|+++ .+.+++++||| +.||.++|+|+|
T Consensus       102 ~~L~~g~~f~~~~~~~~C-~~c~~~~~~~~~  131 (131)
T 2xjy_A          102 KHFCVGDRYLLINSDIVC-EQDIYEWTKING  131 (131)
T ss_dssp             CBCCTTCEEEEETTEEEE-GGGHHHHHHHHC
T ss_pred             CCCCCCCEEEEECCEEEc-HHHHHHHhhccC
Confidence            456544 48889999999 799999999987

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}

Probab=95.96  E-value=0.0015  Score=44.93  Aligned_cols=33  Identities=12%  Similarity=0.111  Sum_probs=27.1

Q ss_pred             ccccccccceecCeeeecCCccccccCCccccCCc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGT   36 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~   36 (85)
                      +.|+...+ +++|+||| +.||.++|+|+..+=+.
T Consensus        95 ~~L~~~~f-~~~g~~yC-~~~y~~~f~~kC~~C~~  127 (182)
T 2jtn_A           95 VPLAERCF-SRGESVYC-KDDFFKRFGTKCAACQL  127 (182)
T ss_dssp             CCCSSCCE-EETTEEEC-HHHHHHTTSCCCTTTCC
T ss_pred             CccCCCce-eECCEeee-cCccccccccccccCCC
Confidence            45776665 79999999 79999999999876554

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A

Probab=95.50  E-value=0.0023  Score=41.28  Aligned_cols=29  Identities=24%  Similarity=0.272  Sum_probs=23.7

Q ss_pred             ccccc--cccceecCeeeecCCccccccCCcc
Q psy16163          2 TVTNT--SVTYTHKGVPYCHVPCYGALFGPQL   31 (85)
Q Consensus         2 K~Lds--g~~aehdgk~YC~k~CY~klFGPkG   31 (85)
                      +.|+.  ..+.+++|+||| +.||.++|+|++
T Consensus        37 ~~L~~~~~~~~~~~g~~yC-~~~y~~~~~~~~   67 (131)
T 2xjy_A           37 CRLGEVGRRLYYKLGRKLC-RRDYLRLFGQDG   67 (131)
T ss_dssp             CBCSSTTCCEEEETTEEEC-HHHHHHHHCCCE
T ss_pred             CccccCCCeEEEECCEEee-cCchhhhCCCcc
Confidence            35653  468899999999 799999999943

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A

Probab=95.40  E-value=0.0023  Score=43.52  Aligned_cols=33  Identities=12%  Similarity=0.111  Sum_probs=26.5

Q ss_pred             ccccccccceecCeeeecCCccccccCCccccCCc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGT   36 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~   36 (85)
                      +.|+...+ ++||+||| +.||.++|||+-.+=+.
T Consensus        41 ~~L~~~~f-~~~g~~yC-~~~y~~~f~~~C~~C~~   73 (169)
T 2rgt_A           41 VPLAERCF-SRGESVYC-KDDFFKRFGTKCAACQL   73 (169)
T ss_dssp             CBCCSCCE-ESSSCEEC-HHHHHHHHSCBCTTTCC
T ss_pred             CcCCCCCc-ccCCeeee-ccccccccccccccccc
Confidence            45776664 79999999 79999999999775443

>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}

Probab=95.36  E-value=0.0036  Score=36.45  Aligned_cols=26  Identities=15%  Similarity=0.305  Sum_probs=21.6

Q ss_pred             ccccccccceecCeeeecCCcccccc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALF   27 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klF   27 (85)
                      +.|+...+.+++++|||.+.||.+++
T Consensus        40 ~~L~~~~f~~~~g~~yC~~~C~~k~~   65 (65)
T 2iyb_E           40 KCLIGQKFMPVEGMVFCSVECKKRMS   65 (65)
T ss_dssp             CBCTTSCCEEETTEEESSHHHHHTTC
T ss_pred             CcCCCCceEEECCEEecCHHHhhhhC
Confidence            46777889999999999558998864

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=95.19  E-value=0.0034  Score=37.62  Aligned_cols=29  Identities=10%  Similarity=0.269  Sum_probs=22.8

Q ss_pred             cccccc-ccc-eecCeeeecCCccccccCCcc
Q psy16163          2 TVTNTS-VTY-THKGVPYCHVPCYGALFGPQL   31 (85)
Q Consensus         2 K~Ldsg-~~a-ehdgk~YC~k~CY~klFGPkG   31 (85)
                      +.|+.+ .+. +++++||| +.||.++|+++-
T Consensus        49 ~~L~~g~~f~~~~~~~~~C-~~c~~~~~~~~~   79 (81)
T 1x6a_A           49 VIIEDGDAYALVQHATLYC-GKCHNEVVSGPS   79 (81)
T ss_dssp             CBCCTTSCEEECSSSCEEE-HHHHHHHHCTTS
T ss_pred             CccCCCCcEEEeeCCEEEC-HHHHHHHhcCCC
Confidence            457553 455 68999999 799999999874

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=94.89  E-value=0.0035  Score=36.69  Aligned_cols=27  Identities=22%  Similarity=0.401  Sum_probs=22.7

Q ss_pred             ccccccccceecCeeeecCCccccccCC
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGP   29 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGP   29 (85)
                      +.|+...+.+++++||| +.||.++|..
T Consensus        41 ~~L~~~~~~~~~~~~yC-~~cy~~~~~~   67 (72)
T 1x61_A           41 AQLRGQHFYAVERRAYC-EGCYVATLES   67 (72)
T ss_dssp             CBCTTSCEEESSSCEEE-HHHHHHHHHT
T ss_pred             CcCCcCcCEeeCCeEEC-HHHHHHHHcc
Confidence            56777778999999999 7999999853

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.67  E-value=0.01  Score=35.52  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=17.9

Q ss_pred             cCeeeecCCccccccCCccccCC
Q psy16163         13 KGVPYCHVPCYGALFGPQLFGHG   35 (85)
Q Consensus        13 dgk~YC~k~CY~klFGPkG~G~G   35 (85)
                      +|+||| +.||.++|+|+=-+=+
T Consensus         1 ~g~~yC-~~~y~~~~~~~C~~C~   22 (82)
T 2ehe_A            1 GSSGSS-GPCYDNTFANTCAECQ   22 (82)
T ss_dssp             CCCCCC-CCCCCCCCSCBCTTTC
T ss_pred             CCceec-hhHhCcccCCcCccCC
Confidence            689999 7999999999754433

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B

Probab=94.49  E-value=0.004  Score=43.05  Aligned_cols=28  Identities=29%  Similarity=0.498  Sum_probs=23.6

Q ss_pred             ccccc--cccceecCeeeecCCccccccCCc
Q psy16163          2 TVTNT--SVTYTHKGVPYCHVPCYGALFGPQ   30 (85)
Q Consensus         2 K~Lds--g~~aehdgk~YC~k~CY~klFGPk   30 (85)
                      +.|+.  ..+.+++++||| +.||.++|+|+
T Consensus        40 ~~L~~~g~~~~~~~g~~yC-~~cy~~~~~~~   69 (188)
T 1rut_X           40 AQLGDIGTSSYTKSGMILC-RNDYIRLFGNS   69 (188)
T ss_dssp             CBHHHHCSEEEEETTEEEC-HHHHHHHHSCC
T ss_pred             cccccCCceEEEeCCcccc-ccccccccccC
Confidence            35665  478899999999 79999999995

>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=94.35  E-value=0.017  Score=34.36  Aligned_cols=28  Identities=11%  Similarity=0.078  Sum_probs=22.6

Q ss_pred             cccc-ccccceecCeeeecCCccccccCCc
Q psy16163          2 TVTN-TSVTYTHKGVPYCHVPCYGALFGPQ   30 (85)
Q Consensus         2 K~Ld-sg~~aehdgk~YC~k~CY~klFGPk   30 (85)
                      +.|+ ...+.+++++||| +.||.++|..+
T Consensus        39 ~~L~~~~~f~~~~~~~yC-~~C~~~~~~~~   67 (73)
T 1wig_A           39 QMFAEGEEMYLQGSSIWH-PACRQAARTED   67 (73)
T ss_dssp             CCCCSSCCCEEETTEEEC-TTHHHHTSSSS
T ss_pred             CCCCCCCeeEeeCCEEEC-hHHChHhhccc
Confidence            4566 4568889999999 79999998764

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=93.12  E-value=0.029  Score=33.22  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=17.9

Q ss_pred             cCeeeecCCccccccCCccccCC
Q psy16163         13 KGVPYCHVPCYGALFGPQLFGHG   35 (85)
Q Consensus        13 dgk~YC~k~CY~klFGPkG~G~G   35 (85)
                      +|+||| +.||.++|+|+=.+=+
T Consensus         1 gg~~yC-~~cy~~~~~~~C~~C~   22 (80)
T 2cuq_A            1 GSSGSS-GPCYENKFAPRCARCS   22 (80)
T ss_dssp             CCCCSC-CCCCCCCSSCCCTTTC
T ss_pred             CCcEEc-HHHHccccCCcCCCCC
Confidence            589999 7999999999854444

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=92.52  E-value=0.041  Score=32.57  Aligned_cols=22  Identities=18%  Similarity=0.141  Sum_probs=17.6

Q ss_pred             cCeeeecCCccccccCCccccCC
Q psy16163         13 KGVPYCHVPCYGALFGPQLFGHG   35 (85)
Q Consensus        13 dgk~YC~k~CY~klFGPkG~G~G   35 (85)
                      +++||| +.||.++|+|+=.+=+
T Consensus         1 gg~~yC-~~~y~~~~~~~C~~C~   22 (80)
T 1x3h_A            1 GSSGSS-GKDFLAMFSPKCGGCN   22 (80)
T ss_dssp             CCCCCC-CCCCCCCCSCBCTTTC
T ss_pred             CCCccc-hhHHhhhcCCccccCC
Confidence            478999 7999999999754433

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}

Probab=92.28  E-value=0.044  Score=32.20  Aligned_cols=18  Identities=11%  Similarity=0.202  Sum_probs=15.5

Q ss_pred             cCeeeecCCccccccCCcc
Q psy16163         13 KGVPYCHVPCYGALFGPQL   31 (85)
Q Consensus        13 dgk~YC~k~CY~klFGPkG   31 (85)
                      .++||| +.||.++|+|+=
T Consensus         1 g~~~yC-~~cy~~~~~~~C   18 (77)
T 2egq_A            1 GSSGSS-GDCYKNFVAKKC   18 (77)
T ss_dssp             CCSSCC-TTCCCSCCCCCC
T ss_pred             CCCeEc-hhHhchhhCccC
Confidence            368999 799999999874

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=91.24  E-value=0.056  Score=32.21  Aligned_cols=29  Identities=14%  Similarity=0.032  Sum_probs=22.6

Q ss_pred             ccccccccceecCe-eeecCCccccccCCcc
Q psy16163          2 TVTNTSVTYTHKGV-PYCHVPCYGALFGPQL   31 (85)
Q Consensus         2 K~Ldsg~~aehdgk-~YC~k~CY~klFGPkG   31 (85)
                      +.|+.+.....+++ +|| +.||.++++-.|
T Consensus        49 ~~L~~~~~~~~~~~~~~C-~~C~~~~~~~~~   78 (81)
T 1v6g_A           49 LPFPPGDRVTFNGKECMC-QKCSLPVSVSGP   78 (81)
T ss_dssp             CCCCSSSCEEEETTEEEE-HHHHSCCSSCCC
T ss_pred             CCCCCCCEEEeCCCCEEC-hhhhcccCCCCC
Confidence            46777777777775 699 799999998765

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=90.23  E-value=0.098  Score=31.02  Aligned_cols=21  Identities=19%  Similarity=0.093  Sum_probs=16.8

Q ss_pred             CeeeecCCccccccCCccccCC
Q psy16163         14 GVPYCHVPCYGALFGPQLFGHG   35 (85)
Q Consensus        14 gk~YC~k~CY~klFGPkG~G~G   35 (85)
                      +.||| +.||.++|+|+=.+=+
T Consensus         2 ~~~yC-~~~y~~~~~~~C~~C~   22 (81)
T 1x6a_A            2 SSGSS-GKDYWGKFGEFCHGCS   22 (81)
T ss_dssp             CCCCC-CCCSSCCSSCBCTTTC
T ss_pred             CCccc-hhHHhhhcCCcCccCC
Confidence            57999 7999999999754333

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=88.59  E-value=0.15  Score=30.18  Aligned_cols=22  Identities=14%  Similarity=-0.052  Sum_probs=17.3

Q ss_pred             cCeeeecCCccccccCCccccCC
Q psy16163         13 KGVPYCHVPCYGALFGPQLFGHG   35 (85)
Q Consensus        13 dgk~YC~k~CY~klFGPkG~G~G   35 (85)
                      ++.||| +.||.++|+|+=-+=+
T Consensus         1 ~~~~yC-~~cy~~~~~~~C~~C~   22 (82)
T 1x63_A            1 GSSGSS-GKCTTREDSPKCKGCF   22 (82)
T ss_dssp             CCSCCC-CCCCSCCCSCBCSSSC
T ss_pred             CCCcCc-hhHHccccCCcCccCC
Confidence            367999 7999999998754433

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=85.33  E-value=0.3  Score=28.93  Aligned_cols=21  Identities=10%  Similarity=-0.099  Sum_probs=16.1

Q ss_pred             cCeeeecCCccccccCCccccCC
Q psy16163         13 KGVPYCHVPCYGALFGPQLFGHG   35 (85)
Q Consensus        13 dgk~YC~k~CY~klFGPkG~G~G   35 (85)
                      ||+||| +.||. +|+|+=-+=+
T Consensus         2 ~g~~yC-~~~y~-~~~~~C~~C~   22 (81)
T 2dlo_A            2 SSGSSG-EGCYV-ATLEKCATCS   22 (81)
T ss_dssp             CCCCCC-CCCCC-SSCCBCTTTC
T ss_pred             cCCEEC-HHHhh-cCCCccccCC
Confidence            789999 79999 7888744333

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=84.95  E-value=0.3  Score=28.93  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=17.0

Q ss_pred             CeeeecCCccccccCCccccCCc
Q psy16163         14 GVPYCHVPCYGALFGPQLFGHGT   36 (85)
Q Consensus        14 gk~YC~k~CY~klFGPkG~G~G~   36 (85)
                      +-+|| +.||.++|+|+=.+=+.
T Consensus         2 ~~~yC-~~dy~~~~~~~C~~C~~   23 (81)
T 1v6g_A            2 SSGSS-GLDYQRLYGTRCFSCDQ   23 (81)
T ss_dssp             CCCCC-CSCGGGSCCCBCTTTCC
T ss_pred             CCCcc-hHHHHhHhCCcCccccC
Confidence            45899 79999999997544443

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A

Probab=84.53  E-value=0.028  Score=38.01  Aligned_cols=27  Identities=11%  Similarity=-0.028  Sum_probs=20.4

Q ss_pred             ccccccc--cceecCeeeecCCccccccCC
Q psy16163          2 TVTNTSV--TYTHKGVPYCHVPCYGALFGP   29 (85)
Q Consensus         2 K~Ldsg~--~aehdgk~YC~k~CY~klFGP   29 (85)
                      +.|.+|.  ...+++++|| +.||.+++..
T Consensus       101 ~~L~~g~~f~~~~~g~~~C-~~c~~~~~~~  129 (169)
T 2rgt_A          101 RQLATGDEFYLMEDSRLVC-KADYETAKQG  129 (169)
T ss_dssp             CBCCTTCEEEECTTSCEEE-HHHHHHHHHC
T ss_pred             CCCCCCCceEEccCCeEEC-HHHHHHHhhc
Confidence            4566554  2567999999 7999999865

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=80.93  E-value=0.64  Score=29.79  Aligned_cols=29  Identities=0%  Similarity=-0.365  Sum_probs=23.6

Q ss_pred             cccccccceecCeeeecCCccccccCCccc
Q psy16163          3 VTNTSVTYTHKGVPYCHVPCYGALFGPQLF   32 (85)
Q Consensus         3 ~Ldsg~~aehdgk~YC~k~CY~klFGPkG~   32 (85)
                      .|.-..+..++++||| +.||.+.+-.+|.
T Consensus        91 ~l~g~~f~~~~~~~yC-~~~~~~~~~~~g~  119 (122)
T 1m3v_A           91 TLMGGEFGDEDERLIT-RLENTQFDAANGI  119 (122)
T ss_dssp             SCCSCTTCCTTCCCCE-ECTTTTTTCCSCC
T ss_pred             CCCCCccEecCCEeEc-cCcchhchhhcCC
Confidence            3555678889999999 7999999987763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	85
d1imla2	48	g.39.1.3 (A:29-76) Cysteine-rich (intestinal) prot	3e-09
d2cu8a2	33	g.39.1.3 (A:38-70) Cysteine-rich (intestinal) prot	4e-06
d1b8ta4	49	g.39.1.3 (A:144-192) Cysteine-rich (intestinal) pr	2e-05
d1b8ta2	65	g.39.1.3 (A:36-100) Cysteine-rich (intestinal) pro	8e-05

>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP, CRIP {Rat (Rattus rattus) [TaxId: 10117]} Length = 48

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 45.9 bits (109), Expect = 3e-09
 Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 1/31 (3%)

Query: 12 HKGVPYCHVPCYGALFGPQLFGHGTRVESHT 42
          H+G PYC+ PCY A+FGP+ FG G   ESHT
Sbjct: 17 HEGKPYCNHPCYSAMFGPKGFGRGG-AESHT 46

>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 4e-06
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 12 HKGVPYCHVPCYGALFG 28
          H G P+CH PCY  LFG
Sbjct: 17 HDGKPFCHKPCYATLFG 33

>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]} Length = 49

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.2 bits (84), Expect = 2e-05
 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 3/33 (9%)

Query: 12 HKGVPYCHVPCYGALFGPQLFGHGTR--VESHT 42
            G  YC   CY   FGP+ FG G       H+
Sbjct: 17 KDGEIYCK-GCYAKNFGPKGFGFGQGAGALIHS 48

>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]} Length = 65

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.8 bits (80), Expect = 8e-05
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 12 HKGVPYCHVPCYGALFGPQLFGHG 35
          H    YC   CYG  +GP+  G G
Sbjct: 17 HGDEIYCK-SCYGKKYGPKGKGKG 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	85
d1imla2	48	Cysteine-rich (intestinal) protein, CRP, CRIP {Rat	99.85
d1b8ta4	49	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	99.73
d1b8ta2	65	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	99.71
d2cu8a2	33	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	99.44
d1a7ia2	32	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	99.01
d2d8ya2	42	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1ibia2	31	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	98.39
d1g47a2	35	Pinch (particularly interesting new Cys-His) prote	96.63
d2dj7a1	31	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	93.92
d2cuqa1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	92.7
d2d8za2	32	Four and a half LIM domains protein 2, FHL2 {Human	92.53
d1x4ka1	32	Four and a half LIM domains protein 2, FHL2 {Human	88.56
d1wyha1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	85.95
d2cora1	31	Pinch (particularly interesting new Cys-His) prote	83.31

>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP, CRIP {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.85  E-value=6.6e-23  Score=122.25  Aligned_cols=41  Identities=46%  Similarity=0.939  Sum_probs=39.3

Q ss_pred             ccccccccceecCeeeecCCccccccCCccccCCccceeeee
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVESHTS   43 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~~~~sh~~   43 (85)
                      |+|||++++|||++|||+|+||+++|||||||+|+ ++||++
T Consensus         7 K~L~sg~~aeHdg~pYC~k~CY~~~FGPkG~g~Gg-~gs~~~   47 (48)
T d1imla2           7 KTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGG-AESHTF   47 (48)
T ss_dssp             CBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCC-SSSCCC
T ss_pred             cCcCCCChhhcCCcccccccchhhccCCCccccCC-ccceec
Confidence            89999999999999999999999999999999998 999984

>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.73  E-value=1.5e-19  Score=107.81  Aligned_cols=40  Identities=30%  Similarity=0.619  Sum_probs=35.2

Q ss_pred             ccccccccceecCeeeecCCccccccCCccccCCc--cceeee
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGT--RVESHT   42 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~--~~~sh~   42 (85)
                      |.|||++++|||++||| |+||+++|||||||+|.  .+.+|+
T Consensus         7 k~Lds~t~~ehdg~~YC-k~CY~k~fGPKG~g~G~gaG~l~~~   48 (49)
T d1b8ta4           7 KSLESTTLADKDGEIYC-KGCYAKNFGPKGFGFGQGAGALIHS   48 (49)
T ss_dssp             CBCCSSSEEEETTEEEE-HHHHHHHTCCCCCCCCCCCCCCCCC
T ss_pred             CccCCCcccccCCcccc-hhhhhhccCCCccCcccCccccccc
Confidence            78999999999999999 89999999999999983  255554

>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.71  E-value=1.1e-18  Score=109.17  Aligned_cols=38  Identities=26%  Similarity=0.593  Sum_probs=34.6

Q ss_pred             ccccccccceecCeeeecCCccccccCCccccCCcccee
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVES   40 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~~~~s   40 (85)
                      |+|||++++||+++||| |+||+|+|||||||||..+.+
T Consensus         7 K~LdS~~~~eh~~e~YC-k~CY~k~fGPkG~G~G~gag~   44 (65)
T d1b8ta2           7 KNLDSTTVAVHGDEIYC-KSCYGKKYGPKGKGKGMGAGT   44 (65)
T ss_dssp             CBCCSSSEEEETTEEEE-HHHHHHHHSCCCCCCCCCCCC
T ss_pred             CccCCCccccCCCcccc-hhhhccccCCCccccccccce
Confidence            79999999999999999 899999999999999963433

>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.1e-15  Score=81.02  Aligned_cols=27  Identities=41%  Similarity=0.979  Sum_probs=26.4

Q ss_pred             ccccccccceecCeeeecCCccccccC
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFG   28 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFG   28 (85)
                      |+|++|.|+||||+|||++|||+.|||
T Consensus         7 ktL~~G~HaEH~gkPYC~~PCY~aLFG   33 (33)
T d2cu8a2           7 KTLTPGGHAEHDGKPFCHKPCYATLFG   33 (33)
T ss_dssp             CBCCTTSCEEETTEEECTTTHHHHHSC
T ss_pred             cccCCCCccccCCCcCcCcchHHhhcC
Confidence            899999999999999999999999998

>d1a7ia2 g.39.1.3 (A:36-67) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=99.01  E-value=2.2e-11  Score=66.48  Aligned_cols=26  Identities=27%  Similarity=0.710  Sum_probs=25.1

Q ss_pred             ccccccccceecCeeeecCCccccccC
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFG   28 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFG   28 (85)
                      |.|||+++++|++++|| |.||+|.||
T Consensus         7 K~LdStTva~h~~eiYC-KsCygkkyg   32 (32)
T d1a7ia2           7 KNLDSTTVAIHDAEVYC-KSCYGKKYG   32 (32)
T ss_dssp             CEECSSCCEEETTEEEC-SHHHHHHCC
T ss_pred             hccCcceeeeecceEEe-hhhccccCC
Confidence            78999999999999999 899999997

>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Eplin, LIMA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.2e-09  Score=62.65  Aligned_cols=30  Identities=20%  Similarity=0.325  Sum_probs=28.4

Q ss_pred             ccccccccceecCeeeecCCccccccCCccc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLF   32 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~   32 (85)
                      ++|..+++++++|++|| ||||.+||.|||-
T Consensus         7 ~~Ls~~~yas~~G~lYC-kpHf~qLF~~kGn   36 (42)
T d2d8ya2           7 NKLSLGTYASLHGRIYC-KPHFNQLFKSKGN   36 (42)
T ss_dssp             CBCCTTTCCCSSSCCCC-HHHHHHHSCCCSC
T ss_pred             CCccCCcchhhCCEecc-HHHHHHHHHhhcC
Confidence            68999999999999999 8999999999984

>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=98.39  E-value=1.8e-08  Score=54.28  Aligned_cols=24  Identities=21%  Similarity=0.483  Sum_probs=22.4

Q ss_pred             ccccccccceecCeeeecCCccccc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGAL   26 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~kl   26 (85)
                      |.|+|++++++||++|| |.||+|+
T Consensus         8 k~lestt~adkdgeiyc-k~cyak~   31 (31)
T d1ibia2           8 KSLESTTLTEKEGEIYC-KGCYAKN   31 (31)
T ss_dssp             CEECSSCSEEETTEEEC-HHHHHHC
T ss_pred             CccccceeeccCCcEEE-eeeeecC
Confidence            78999999999999999 8999874

>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00016  Score=39.02  Aligned_cols=27  Identities=26%  Similarity=0.568  Sum_probs=23.8

Q ss_pred             ccccccccceecCeeeecCCccccccCC
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALFGP   29 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klFGP   29 (85)
                      +.|..+..-|+||+|||. .||-.+|-|
T Consensus         8 ~~f~~~~F~e~~G~pYCe-~~Y~~lFAP   34 (35)
T d1g47a2           8 QQFPEGLFYEFEGRKYCE-HDFQMLFAP   34 (35)
T ss_dssp             CCCGGGCSEEETTEEECH-HHHHHHCCC
T ss_pred             CCCCCCCeEEECCEecCh-HhHHhhcCC
Confidence            457778889999999994 999999988

>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 3, abLIM-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.0083  Score=31.65  Aligned_cols=22  Identities=45%  Similarity=0.818  Sum_probs=18.4

Q ss_pred             ccccceecCeeeecCCccccccC
Q psy16163          6 TSVTYTHKGVPYCHVPCYGALFG   28 (85)
Q Consensus         6 sg~~aehdgk~YC~k~CY~klFG   28 (85)
                      .+-.-.+||.||| ..+|.++||
T Consensus        10 ~gEYm~kdG~PyC-e~DY~~~FG   31 (31)
T d2dj7a1          10 TGEYISKDGVPYC-ESDYHAQFG   31 (31)
T ss_dssp             SSCCEEETTEEEC-TTHHHHHTT
T ss_pred             cceeecCCCCccc-HHHHHHhcC
Confidence            3456679999999 599999998

>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.70  E-value=0.0085  Score=31.80  Aligned_cols=25  Identities=36%  Similarity=0.751  Sum_probs=20.6

Q ss_pred             ccccccccceecCeeeecCCcccccc
Q psy16163          2 TVTNTSVTYTHKGVPYCHVPCYGALF   27 (85)
Q Consensus         2 K~Ldsg~~aehdgk~YC~k~CY~klF   27 (85)
                      |.|.--.+..+|.+||| -.|++.||
T Consensus         7 ~~LaGqrFTSrde~pYC-~~Cfg~Lf   31 (32)
T d2cuqa1           7 TPLAGQQFTSRDEDPYC-VACFGELF   31 (32)
T ss_dssp             CBCTTCCEEECSSSEEE-HHHHHHHT
T ss_pred             ccccCCccccCCCCccH-HHHhHhhc
Confidence            45666678889999999 59999988

>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.53  E-value=0.0089  Score=31.70  Aligned_cols=24  Identities=17%  Similarity=0.513  Sum_probs=19.4

Q ss_pred             cccccccceecCeeeecCCcccccc
Q psy16163          3 VTNTSVTYTHKGVPYCHVPCYGALF   27 (85)
Q Consensus         3 ~Ldsg~~aehdgk~YC~k~CY~klF   27 (85)
                      .|.--.+..+|++||| -.||..+|
T Consensus         8 ~L~GQry~~rd~~PyC-~~Cf~~lf   31 (32)
T d2d8za2           8 QLSGQRFTARDDFAYC-LNCFCDLY   31 (32)
T ss_dssp             BCTTSCCEESSSSEEC-HHHHHHHT
T ss_pred             cccCceeeecCCCeeh-HHhhHhhc
Confidence            4555567788999999 59999988

>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.56  E-value=0.04  Score=29.09  Aligned_cols=21  Identities=29%  Similarity=0.665  Sum_probs=17.0

Q ss_pred             ccccceecCeeeecCCcccccc
Q psy16163          6 TSVTYTHKGVPYCHVPCYGALF   27 (85)
Q Consensus         6 sg~~aehdgk~YC~k~CY~klF   27 (85)
                      .-++-.+|++.|| .+||.+.|
T Consensus        11 tksfipk~~~~yC-vpCyE~kf   31 (32)
T d1x4ka1          11 TKSFIPKDNQNFC-VPCYEKQH   31 (32)
T ss_dssp             SSSEEEETTEEEE-HHHHHHHT
T ss_pred             ccccccCCCCceE-eecchhhc
Confidence            3456678999999 59999988

>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.95  E-value=0.074  Score=27.99  Aligned_cols=21  Identities=43%  Similarity=0.947  Sum_probs=17.1

Q ss_pred             ccccceecCeeeecCCcccccc
Q psy16163          6 TSVTYTHKGVPYCHVPCYGALF   27 (85)
Q Consensus         6 sg~~aehdgk~YC~k~CY~klF   27 (85)
                      +-++-..++..|| .+||.+.|
T Consensus        11 tkSFip~~~~~yC-vpCYE~kf   31 (32)
T d1wyha1          11 SRSFVPDKGAHYC-VPCYENKF   31 (32)
T ss_dssp             TSCEEEETTEEEE-HHHHHHHT
T ss_pred             ccccccCCCcEEE-Eecccccc
Confidence            3456678999999 69999987

>d2cora1 g.39.1.3 (A:43-73) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.31  E-value=0.11  Score=27.02  Aligned_cols=18  Identities=33%  Similarity=0.741  Sum_probs=14.6

Q ss_pred             ccceecCeeeecCCccccc
Q psy16163          8 VTYTHKGVPYCHVPCYGAL   26 (85)
Q Consensus         8 ~~aehdgk~YC~k~CY~kl   26 (85)
                      ...|-+|++|| -||++|.
T Consensus        12 dArEl~geLyC-LpChdKm   29 (31)
T d2cora1          12 DARELKGELYC-LPCHDKM   29 (31)
T ss_dssp             TCEEETTEEEC-HHHHHTT
T ss_pred             hHHHhcCCEEE-Eeccccc
Confidence            34577999999 6999874