Psyllid ID: psy16204

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------
Protein Sequence
MDLTFSRLPFYYSTASPNPGLNHMARLMDSLILDSFSPFSFTKITTTRRPVRMNANNTRRQQSKQQHVTPQMLYRAKSQATYQEEKKPSANKEPDSIADRWINSLRKRDPEIQPTLPAIIPSRSRSCSHPTTLKKTTRSFGSNTSASSTKKERKLGFKPAVKKIIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGSH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccHHHHHHHHcccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHHHHHHHcccccccHHHcccccccccEEEEEcccccccccccccccccccccccccccccccHHHHcccccccccccEEEEEEccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccEEEEcccccccccccccHcccccccEEEEEccccccEEEEccccccccccccccccccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHEEEccccccccccHHHccccccccccccccHHHHHEEEcccccHHccccHHHHHHHHHHHHcccccccHHccEEEEEccccccHHHHHHHHHHHcccEEEEEccHHHHHHHccccHHHHHHHHHHHHHHHcccccccEEEEccHcccccEEEEcccccccccccccccEEcccccccccHHcHHHHHHHHcccccccccEEEEEEEcccccccHHHHHHHccccHHHHHHHHHHHHHccccEEEHHHccHHHccccccccccHHHHHHHHEEccccccccccccEEEEEcccccccHHHHHHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHccHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mdltfsrlpfyystaspnpglnHMARLMDSLildsfspfsftkitttrrpvrmnanntrrqqskqqhvtpQMLYRaksqatyqeekkpsankepdsIADRWINSlrkrdpeiqptlpaiipsrsrscshpttlkkttrsfgsntsasstkkerklgfKPAVKKIIAAnasensvsheanekdgvfrQDIREKIFYSTGFEPSLIETLEKDIlqnnpnvqwnKVAGLTEAKAILQEAMVLPTIMPEFFKEALErhshgtgkTMLAKAVATecgttffnvssstltskyrgeSEKLVRLLFEMVSFLVGLHSNKTFYLVGvlngeptttfAYNKQILQMNRRVLKGAlttaptraenqesgpsIFSVMVDGLGKGPWSMVAVVATHFtwgkkgtcqsheghsgrinknslfqarcyapstifIDEVDslcsmrgsdsehEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMlegytgsdiaNLARDAAMMSIRRKIMGQTPAQIKEIkqedidlpvtEKDFREAIARCRKsvtahdlskydswmnefgsh
Flexible Loop (DISEMBL)
mdltfsrlpfyystaspnpgLNHMARLMDSLILDSFSPFsftkitttrrpvrmnanntrrqqskqqhvtpqMLYRAKSQATYqeekkpsankepdsiADRWINSlrkrdpeiqptlpaiipsrsrscshpttlkkttrsfgsntsasstkkerklgfkPAVKKIIAanasensvsheanekdgvfrqDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTffnvssstltskyrGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAptraenqesgpsIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMlegytgsdiaNLARDAAMMSIRRKIMGQTPAQIkeikqedidlpvTEKDFREAIARCRksvtahdlskydswmnefgsh
Low Complexity Region (SEG)
MDLTFSRLPFYYSTASPNPGLNHMARLMDSLILDSFSPFSFTKITTTRRPVRMNANNTRRQQSKQQHVTPQMLYRAKSQATYQEEKKPSANKEPDSIADRWINSLRKRDPEIQPTLPAIIPSRSRSCSHPTTLKKTTRSFGSNTSASSTKKERKLGFKPAVKKIIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGSH
Disordered region (IsUnstruct)
******RLPFYYSTA****GLNHMARLMDSLILDSFSPFSFTKIT******************************************************************************************************************************************VFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALT**************IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLC**************FKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMG*****I**I***DIDLPVTEKDFREAIARCRKSVTAHDLSKY**********
Disordered Region (DISOPRED)
*****SR***************************************************************************************************************************************************************************************************LIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQM************************IFSVMVDGLGKGPWSMVAVVATHFTWGKKGT*********RINKNSLFQARCYAPSTIFIDEVDSLCSMRGS*S*HEASRRFKAELLIQMDG***SLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRK****************IDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG**
Disordered Region (DISEMBL)
MDLTFSRLPFYYSTASPNPGLNHMARLMDSLILDSFSPFSFTKITTTRRPVRMNA****************MLYRA*****************PDSIADRWINSLRKRDPEIQPTLPAIIPSRSRSCSHPTTLK*******************KLGFKPAVKKIIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKK*********SGRINKNSLFQARCYAPSTIFIDEVDSLC***********SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGSH
Disordered Region (DISPRO)
*****SR****YSTASPNPGLN****LMDSLILDSFSPFSFTKITTTRRPVRMNANNTRRQQSKQQHVTPQMLYRAKSQATYQEEKKPSANKEPDSIADRWINSLRKRDPEIQPTLPAIIPSRSRSCSHPTTLKKTTRSFGSNTSASSTKKERKLGFKPAVKKIIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLTFSRLPFYYSTASPNPGLNHMARLMDSLILDSFSPFSFTKITTTRRPVRMNANNTRRQQSKQQHVTPQMLYRAKSQATYQEEKKPSANKEPDSIADRWINSLRKRDPEIQPTLPAIIPSRSRSCSHPTTLKKTTRSFGSNTSASSTKKERKLGFKPAVKKIIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGSH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	577	2.2.26 [Sep-21-2011]
Q5U3S1	488	Katanin p60 ATPase-contai	yes	N/A	0.523	0.618	0.373	3e-58
B4USW8	490	Katanin p60 ATPase-contai	N/A	N/A	0.535	0.630	0.369	8e-57
B7NZ88	490	Katanin p60 ATPase-contai	yes	N/A	0.571	0.673	0.358	2e-56
Q9BW62	490	Katanin p60 ATPase-contai	yes	N/A	0.512	0.604	0.371	2e-56
A9RA82	490	Katanin p60 ATPase-contai	N/A	N/A	0.512	0.604	0.371	4e-56
B5X3X5	486	Katanin p60 ATPase-contai	N/A	N/A	0.542	0.644	0.370	5e-56
Q5XIK7	488	Katanin p60 ATPase-contai	yes	N/A	0.573	0.678	0.345	1e-55
Q8K0T4	488	Katanin p60 ATPase-contai	yes	N/A	0.535	0.633	0.364	2e-55
Q5RII9	485	Katanin p60 ATPase-contai	no	N/A	0.516	0.614	0.382	6e-55
Q0IIR9	492	Katanin p60 ATPase-contai	no	N/A	0.516	0.605	0.366	1e-54

>sp|Q5U3S1|KATL1_DANRE Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio GN=katnal1 PE=2 SV=1

 Score =  226 bits (577), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 150/402 (37%), Positives = 209/402 (51%), Gaps = 100/402 (24%)

Query: 188 DIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF 247
           D+ +K F  TG++  L++ LE+DI+  NPN+ W+ +A L +AK +L+EA+VLP  MP+FF
Sbjct: 173 DVEQKKFDGTGYDSDLVDALERDIVSRNPNIHWDDIADLEDAKKLLREAVVLPMWMPDFF 232

Query: 248 KE-------ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
           K         L     GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE
Sbjct: 233 KGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 292

Query: 301 MVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGP 360
           M  F                   PTT F    +I  +  R        A  R +++    
Sbjct: 293 MARFYA-----------------PTTIFI--DEIDSICGRRGTSDEHEASRRVKSE---- 329

Query: 361 SIFSVMVDGLG-----KGPWSMVAVV-ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCY 414
               V +DG+G     + P  MV V+ AT+F W         E    R+ K      R Y
Sbjct: 330 --LLVQMDGVGGAQESEDPSKMVMVLAATNFPW------DIDEALRRRLEK------RIY 375

Query: 415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPY 474
            P          L + +G           +AEL                           
Sbjct: 376 IP----------LPTAKG-----------RAEL--------------------------- 387

Query: 475 QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 534
             L + L  V +  ++D    ++ +EGY+G+DI N+ RDA+MM++RR+I G +P +I+ +
Sbjct: 388 --LKINLREVDVASDVDLTVFAEKIEGYSGADITNVCRDASMMAMRRRIQGLSPEEIRAL 445

Query: 535 KQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
            ++++ +PVT +DF  A+ +  KSV+A DL KY+SWM+EFGS
Sbjct: 446 SKDELQMPVTMEDFELALKKISKSVSAADLEKYESWMSEFGS 487

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.
Danio rerio (taxid: 7955)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 3

>sp|B4USW8|KATL1_OTOGA Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1

 Score =  222 bits (565), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 152/411 (36%), Positives = 209/411 (50%), Gaps = 102/411 (24%)

Query: 179 NEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMV 238
           N +DG    +I +  F   G++  LIE LE+DI+  NP++ W+ +A L EAK +L+EA+V
Sbjct: 168 NMQDGASDGEIPK--FDGAGYDKDLIEALERDIVSRNPSIHWDDIADLEEAKKLLREAVV 225

Query: 239 LPTIMPEFFKE-------ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGES 291
           LP  MP+FFK         L     GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGES
Sbjct: 226 LPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGES 285

Query: 292 EKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPT 351
           EKLVRLLFEM  F                   PTT F    +I  +  R        A  
Sbjct: 286 EKLVRLLFEMARFYA-----------------PTTIFI--DEIDSICSRRGTSDEHEASR 326

Query: 352 RAENQESGPSIFSVMVDGLGKG-----PWSMVAVV-ATHFTWGKKGTCQSHEGHSGRINK 405
           R +++        + +DG+G       P  MV V+ AT+F W         E    R+ K
Sbjct: 327 RVKSE------LLIQMDGVGGALENDDPSKMVMVLAATNFPW------DIDEALRRRLEK 374

Query: 406 NSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIM 465
                 R Y P          L + +G           +AEL                  
Sbjct: 375 ------RIYIP----------LPTAKG-----------RAEL------------------ 389

Query: 466 ILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMG 525
                      L + L  V +D ++    I++ +EGY+G+DI N+ RDA++M++RR+I G
Sbjct: 390 -----------LKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRING 438

Query: 526 QTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
            +P +I+ + +E++ +PVT+ DF  A+ +  KSV+A DL KY+ WM EFGS
Sbjct: 439 LSPEEIRALSKEELQMPVTKGDFELALKKIAKSVSAADLEKYEKWMVEFGS 489

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Otolemur garnettii (taxid: 30611)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|B7NZ88|KATL1_RABIT Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1

 Score =  221 bits (562), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 155/432 (35%), Positives = 213/432 (49%), Gaps = 102/432 (23%)

Query: 158 KPAVKKIIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPN 217
           KP+  +     A         N +DG    +I +  F   G++  L+E LE+DI+  NP+
Sbjct: 147 KPSASRDKDCRARGRDDKGRKNMQDGASDGEIPK--FDGAGYDKDLVEALERDIVSRNPS 204

Query: 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE-------ALERHSHGTGKTMLAKAVATE 270
           + W+ +A L EAK +L+EA+VLP  MP+FFK         L     GTGKTMLAKAVATE
Sbjct: 205 IHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATE 264

Query: 271 CGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAY 330
           CGTTFFNVSSSTLTSKYRGESEKLVRLLFEM  F                   PTT F  
Sbjct: 265 CGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYA-----------------PTTIFI- 306

Query: 331 NKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKG-----PWSMVAVV-ATH 384
             +I  +  R        A  R +++        V +DG+G       P  MV V+ AT+
Sbjct: 307 -DEIDSICSRRGTSDEHEASRRVKSE------LLVQMDGVGGALENDDPSKMVMVLAATN 359

Query: 385 FTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFK 444
           F W         E    R+ K      R Y P          L + +G           +
Sbjct: 360 FPW------DIDEALRRRLEK------RIYIP----------LPTAKG-----------R 386

Query: 445 AELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTG 504
           AELL                              + L  V +D ++    I++ +EGY+G
Sbjct: 387 AELL-----------------------------KISLREVELDPDIRLEDIAEKIEGYSG 417

Query: 505 SDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDL 564
           +DI N+ RDA++M++RR+I G +P +I+ + +E++ +PVT  DF  A+ +  KSV+A DL
Sbjct: 418 ADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQMPVTRGDFELALKKIAKSVSAADL 477

Query: 565 SKYDSWMNEFGS 576
            KY+ WM EFGS
Sbjct: 478 EKYEKWMVEFGS 489

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Oryctolagus cuniculus (taxid: 9986)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9BW62|KATL1_HUMAN Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=1 SV=1

 Score =  220 bits (561), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 147/396 (37%), Positives = 202/396 (51%), Gaps = 100/396 (25%)

Query: 194 FYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE---- 249
           F   G++  L+E LE+DI+  NP++ W+ +A L EAK +L+EA+VLP  MP+FFK     
Sbjct: 181 FDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRP 240

Query: 250 ---ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLV 306
               L     GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM  F  
Sbjct: 241 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYA 300

Query: 307 GLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVM 366
                            PTT F    +I  +  R        A  R +++        + 
Sbjct: 301 -----------------PTTIFI--DEIDSICSRRGTSDEHEASRRVKSE------LLIQ 335

Query: 367 VDGLGKG-----PWSMVAVV-ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIF 420
           +DG+G       P  MV V+ AT+F W         E    R+ K      R Y P    
Sbjct: 336 MDGVGGALENDDPSKMVMVLAATNFPW------DIDEALRRRLEK------RIYIP---- 379

Query: 421 IDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC 480
                 L + +G           +AELL                              + 
Sbjct: 380 ------LPTAKG-----------RAELL-----------------------------KIN 393

Query: 481 LEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID 540
           L  V +D ++    I++ +EGY+G+DI N+ RDA++M++RR+I G +P +I+ + +E++ 
Sbjct: 394 LREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQ 453

Query: 541 LPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
           +PVT+ DF  A+ +  KSV+A DL KY+ WM EFGS
Sbjct: 454 MPVTKGDFELALKKIAKSVSAADLEKYEKWMVEFGS 489

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|A9RA82|KATL1_PAPAN Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1

 Score =  219 bits (558), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 147/396 (37%), Positives = 201/396 (50%), Gaps = 100/396 (25%)

Query: 194 FYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE---- 249
           F   G++  L+E LE+DI+  NP++ W+ +A L EAK +L+EA+VLP  MP+FFK     
Sbjct: 181 FDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRP 240

Query: 250 ---ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLV 306
               L     GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM  F  
Sbjct: 241 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYA 300

Query: 307 GLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVM 366
                            PTT F    +I  +  R        A  R +++        + 
Sbjct: 301 -----------------PTTIFI--DEIDSICSRRGTSDEHEASRRVKSE------LLIQ 335

Query: 367 VDGLGKG-----PWSMVAVV-ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIF 420
           +DG+G       P  MV V+ AT+F W         E    R+ K      R Y P    
Sbjct: 336 MDGVGGALENDDPSKMVMVLAATNFPW------DIDEALRRRLEK------RIYIP---- 379

Query: 421 IDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC 480
                 L + +G           +AELL                              + 
Sbjct: 380 ------LPTAKG-----------RAELL-----------------------------KIN 393

Query: 481 LEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID 540
           L  V +D ++    I++ +EGY+G+DI N+ RDA++M++RR+I G  P +I+ + +E++ 
Sbjct: 394 LREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLGPEEIRALSKEELQ 453

Query: 541 LPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
           +PVT+ DF  A+ +  KSV+A DL KY+ WM EFGS
Sbjct: 454 MPVTKGDFELALKKIAKSVSAADLEKYEKWMVEFGS 489

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Papio anubis (taxid: 9555)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|B5X3X5|KTNA1_SALSA Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1

 Score =  219 bits (558), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 209/416 (50%), Gaps = 103/416 (24%)

Query: 177 EANEKDGVFRQDIREK---IFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAIL 233
           EA  KD   + ++ EK    F   G++  LIE LE+DI+  NPNV+W+ +A L EAK +L
Sbjct: 157 EAKPKDDKNKAEVSEKEVKRFDGQGYDKDLIEALERDIISQNPNVKWDDIADLEEAKKLL 216

Query: 234 QEAMVLPTIMPEFFKE-------ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK 286
           +EA+VLP  MPEFFK         L     GTGKT+LAKAVATEC TTFFNVSSSTLTSK
Sbjct: 217 KEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSK 276

Query: 287 YRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGAL 346
           YRGESEKLVR+LFEM  F                   PTT F    +I  M  R      
Sbjct: 277 YRGESEKLVRILFEMARFYA-----------------PTTIFI--DEIDSMCSRRGTSEE 317

Query: 347 TTAPTRAENQESGPSIFSVMVDGLG-----KGPWSMVAVV-ATHFTWGKKGTCQSHEGHS 400
             A  R + +        V +DG+G     + P  MV V+ AT+F W         E   
Sbjct: 318 HEASRRVKAE------LLVQMDGVGGASDNEDPSKMVMVLAATNFPW------DIDEALR 365

Query: 401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYE 460
            R+ K      R Y P          L S +G           + ELL            
Sbjct: 366 RRLEK------RIYIP----------LPSAKG-----------RVELL------------ 386

Query: 461 DKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIR 520
                             + L+ + +  ++D  KI++  EGY+G+DI N+ RDA++M++R
Sbjct: 387 -----------------RINLKELELANDVDMAKIAEQSEGYSGADITNVCRDASLMAMR 429

Query: 521 RKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
           R+I G TP +I+ I + ++ +P T +DF  ++ +  KSV+A DL KY+ W+ EFGS
Sbjct: 430 RRIEGLTPEEIRNISRAEMHMPTTMEDFESSLKKVSKSVSASDLEKYEKWIEEFGS 485

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Salmo salar (taxid: 8030)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q5XIK7|KATL1_RAT Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1

 Score =  218 bits (554), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 155/448 (34%), Positives = 214/448 (47%), Gaps = 117/448 (26%)

Query: 142 SNTSASSTKKERKLGFKPAVKKIIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEP 201
           S+ +AS  K  R  G     +K +   AS+  +                   F   G++ 
Sbjct: 144 SDKAASRDKDYRARGRDDKARKNMQDGASDGEIPK-----------------FDGAGYDK 186

Query: 202 SLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE-------ALERH 254
            L+E LE+DI+  NP++ W+ +A L EAK +L+EA+VLP  MP+FFK         L   
Sbjct: 187 DLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVG 246

Query: 255 SHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTF 314
             GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM  F          
Sbjct: 247 PPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYA-------- 298

Query: 315 YLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKG- 373
                    PTT F    +I  +  R        A  R +++        + +DG+G   
Sbjct: 299 ---------PTTIFI--DEIDSICSRRGTSDEHEASRRVKSE------LLIQMDGVGGAL 341

Query: 374 ----PWSMVAVV-ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLC 428
               P  MV V+ AT+F W         E    R+ K      R Y P          L 
Sbjct: 342 ENDDPSKMVMVLAATNFPW------DIDEALRRRLEK------RIYIP----------LP 379

Query: 429 SMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV 488
           + +G           +AELL                              + L  V +D 
Sbjct: 380 TAKG-----------RAELL-----------------------------KISLREVELDP 399

Query: 489 NLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDF 548
           ++    I++  EGY+G+DI N+ RDA++M++RR+I G +P +I+ + +E++ +PVT  D 
Sbjct: 400 DIHLEDIAEKTEGYSGADITNICRDASLMAMRRRINGLSPEEIRALSKEELQMPVTRGDL 459

Query: 549 REAIARCRKSVTAHDLSKYDSWMNEFGS 576
             A+ +  KSV+A DL KY+ WM EFGS
Sbjct: 460 ELALKKIAKSVSAADLEKYEKWMVEFGS 487

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q8K0T4|KATL1_MOUSE Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=1 SV=1

 Score =  217 bits (552), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 150/411 (36%), Positives = 205/411 (49%), Gaps = 102/411 (24%)

Query: 179 NEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMV 238
           N +DG    +I +  F   G++  L+E LE+DI+  NP++ W+ +A L EAK +L+EA+V
Sbjct: 166 NVQDGASDSEIPK--FDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVV 223

Query: 239 LPTIMPEFFKE-------ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGES 291
           LP  MP+FFK         L     GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGES
Sbjct: 224 LPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGES 283

Query: 292 EKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPT 351
           EKLVRLLFEM  F                   PTT F    +I  +  R        A  
Sbjct: 284 EKLVRLLFEMARFYA-----------------PTTIFI--DEIDSICSRRGTSDEHEASR 324

Query: 352 RAENQESGPSIFSVMVDGLGKG-----PWSMVAVV-ATHFTWGKKGTCQSHEGHSGRINK 405
           R +++        + +DG+G       P  MV V+ AT+F W         E    R+ K
Sbjct: 325 RVKSE------LLIQMDGVGGALENDDPSKMVMVLAATNFPW------DIDEALRRRLEK 372

Query: 406 NSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIM 465
                 R Y P          L + +G           +AEL                  
Sbjct: 373 ------RIYIP----------LPTAKG-----------RAEL------------------ 387

Query: 466 ILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMG 525
                      L + L  V +D ++    I+   EGY+G+DI N+ RDA++M++RR+I G
Sbjct: 388 -----------LKISLREVELDPDVHLEDIADKTEGYSGADITNICRDASLMAMRRRING 436

Query: 526 QTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
            +P +I+ + +E++ +PVT  D   A+ +  KSV+A DL KY+ WM EFGS
Sbjct: 437 LSPEEIRALSKEELQMPVTRGDLELALKKIAKSVSAADLEKYEKWMVEFGS 487

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q5RII9|KTNA1_DANRE Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1

 Score =  215 bits (548), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 152/397 (38%), Positives = 201/397 (50%), Gaps = 99/397 (24%)

Query: 192 KIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE-- 249
           K F   G +  LI+ LE+DI+  NPNV W+ +A L EAK +L+EA+VLP  MPEFFK   
Sbjct: 175 KRFDRGGEDKDLIDALERDIISQNPNVTWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIR 234

Query: 250 -----ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSF 304
                 L     GTGKT+LAKAVATEC TTFFNVSSSTLTSKYRGESEKLVRLLFEM  F
Sbjct: 235 RPWKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMARF 294

Query: 305 LVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFS 364
                              PTT F      +   R   +    +   +AE          
Sbjct: 295 YA-----------------PTTIFIDEIDSICSRRGTSEEHEASRRVKAE--------LL 329

Query: 365 VMVDGLG----KGPWSMVAVV-ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTI 419
           V +DG+G      P  MV V+ AT+F W         E    R+ K      R Y P   
Sbjct: 330 VQMDGVGGTSENDPSKMVMVLAATNFPW------DIDEALRRRLEK------RIYIP--- 374

Query: 420 FIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTL 479
                  L S +G                 ++D L  +L E      L   N        
Sbjct: 375 -------LPSAKG-----------------RVDLLKINLKE------LDLAN-------- 396

Query: 480 CLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDI 539
                  DVN+D  KI++ +EGY+G+DI N+ RDA++M++RR+I G TP +I+ + ++++
Sbjct: 397 -------DVNMD--KIAEQMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLPKDEM 447

Query: 540 DLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
            +P T +DF  A+ +  KSV+A DL KY+ W+ EFGS
Sbjct: 448 HMPTTMEDFETALKKVSKSVSAADLEKYEKWIAEFGS 484

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays, such as that seen during disassembly of interphase microtubules at the G2-M transition. May also be required for microtubule release from the centrosome after nucleation. In mitotic spindles this could allow depolymerization of the microtubule end proximal to the centrosome, and subsequent poleward microtubule flux.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q0IIR9|KTNA1_XENTR Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1

 Score =  215 bits (547), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 146/398 (36%), Positives = 203/398 (51%), Gaps = 100/398 (25%)

Query: 192 KIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE-- 249
           K F  TG++  LIE LE+DI+  NPN++W+ +A L EAK +L+EA+VLP  MPEFFK   
Sbjct: 181 KKFDGTGYDKDLIEALERDIISQNPNIRWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIR 240

Query: 250 -----ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSF 304
                 L     GTGKT+LAKAVATEC TTFFN+SSSTLTSKYRGESEKLVRLLFEM  F
Sbjct: 241 RPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARF 300

Query: 305 LVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFS 364
                              PTT F      +   R   +    +   +AE          
Sbjct: 301 YA-----------------PTTIFIDEIDSICSRRGTSEEHEASRRVKAE--------LL 335

Query: 365 VMVDGLG-----KGPWSMVAVV-ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPST 418
           V +DG+G     + P  MV V+ AT+F W         E    R+ K      R Y P  
Sbjct: 336 VQMDGVGGASENEDPSKMVMVLAATNFPW------DIDEALRRRLEK------RIYIP-- 381

Query: 419 IFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLT 478
                   L S +G             E L++++     L +D                 
Sbjct: 382 --------LPSAKGR------------EELLRINLKELELADD----------------- 404

Query: 479 LCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQED 538
                    VN++   I++ ++GY+G+DI N+ RDA++M++RR+I G TP +I+ + ++D
Sbjct: 405 ---------VNIEC--IAENMDGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSRDD 453

Query: 539 IDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
           + +P T +DF  A+ +  KSV+A D+ KY+ W+ EFGS
Sbjct: 454 MHMPTTMEDFEMALKKVSKSVSASDIEKYEKWIEEFGS 491

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	577
432112800	562	Katanin p60 ATPase-containing subunit A1	0.566	0.581	0.409	5e-77
405971029	1717	Katanin p60 ATPase-containing subunit [C	0.530	0.178	0.370	8e-63
242024677	483	conserved hypothetical protein [Pediculu	0.469	0.561	0.5	2e-62
357612799	530	putative Katanin p60 ATPase-containing s	0.504	0.549	0.397	1e-59
157112522	624	aaa atpase [Aedes aegypti] gi|108878039|	0.490	0.453	0.445	7e-59
170030497	640	AAA family ATPase [Culex quinquefasciatu	0.490	0.442	0.422	2e-58
328719677	474	PREDICTED: katanin p60 ATPase-containing	0.367	0.447	0.508	2e-58
55925351	488	katanin p60 ATPase-containing subunit A-	0.523	0.618	0.373	2e-56
449269674	488	Katanin p60 ATPase-containing subunit A-	0.639	0.756	0.341	5e-56
390178459	610	GA30160, isoform A [Drosophila pseudoobs	0.367	0.347	0.462	7e-56

>gi|432112800|gb|ELK35398.1| Katanin p60 ATPase-containing subunit A1 [Myotis davidii]

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 171/418 (40%), Positives = 237/418 (56%), Gaps = 91/418 (21%)

Query: 194 FYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE---- 249
           F STG++  L+E LE+DI+  NPNV+W+ +A L EAK +L+EA+VLP  MPEFFK     
Sbjct: 200 FDSTGYDKDLVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFKGIRRP 259

Query: 250 ---ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLV 306
               L     GTGKT+LAKAVATEC TTFFNVSSSTLTSKYRGESEKLVRLLFEM     
Sbjct: 260 WKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEM----- 314

Query: 307 GLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVM 366
                      GVL   P  T           + +L  A+ T        E   + F+V 
Sbjct: 315 -----------GVLMVGPPGT----------GKTLLAKAVAT--------ECKTTFFNVS 345

Query: 367 VDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDS 426
              L                         + G S ++ +     AR Y+P+TIFIDE+DS
Sbjct: 346 SSTL----------------------TSKYRGESEKLVRLLFEMARFYSPATIFIDEIDS 383

Query: 427 LCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYED---KIIMILAATNHPY--------- 474
           +CS RG+  EHEASRR KAELL+QMDG+  +   D   K++M+LAATN P+         
Sbjct: 384 ICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRR 443

Query: 475 ----------------QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMS 518
                           +LL + L  + +  ++D  +I++ +EGY+G+DI N+ RDA++M+
Sbjct: 444 LEKRIYIPLPSAKGREELLRISLRELELADDVDLARIAENMEGYSGADITNVCRDASLMA 503

Query: 519 IRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
           +RR+I G TP +I+ + +E++ +P T +DF  A+ +  KSV+A D+ +Y+ W+ EFGS
Sbjct: 504 MRRRIEGLTPEEIRNLSREEMHMPTTMEDFEMALKKVSKSVSAADIERYEKWILEFGS 561

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405971029|gb|EKC35887.1| Katanin p60 ATPase-containing subunit [Crassostrea gigas]

 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 156/421 (37%), Positives = 217/421 (51%), Gaps = 115/421 (27%)

Query: 194 FYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALER 253
           F  TG++  L+E LE+DI+Q NPNV W+ +A L EAKA+L+EA++LP ++P+FFK  + R
Sbjct: 180 FDPTGYDKDLVENLERDIVQKNPNVSWDSIADLVEAKALLKEAVILPLVIPDFFK-GIRR 238

Query: 254 --------HSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFL 305
                      GTGKTMLAKAVATECGTTFFN+SSSTLTSK+RGESEKLVR+LFEM   +
Sbjct: 239 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFNISSSTLTSKWRGESEKLVRVLFEMGVLM 298

Query: 306 VGLHSNKTFYLVGVLNGEPTTTF----------AYNKQILQMNRRVLKGALTTAPTRAEN 355
           VG        L   +  E  TTF           Y+ +  ++ R + + A   AP+    
Sbjct: 299 VGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYHGESEKLVRILFEMARFYAPS---- 354

Query: 356 QESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYA 415
                +IF   +D +G                 K+G  Q H                   
Sbjct: 355 -----TIFIDEIDSIG----------------SKRGGGQEH------------------- 374

Query: 416 PSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLY-----EDKIIMILAAT 470
                                 EASRR K+ELL QMDG+ ++       E+KI+M+LAAT
Sbjct: 375 ----------------------EASRRVKSELLTQMDGVTATQSTDEEGENKIVMVLAAT 412

Query: 471 NHPY-------------------------QLLTLCLEGVVIDVNLDFHKISKMLEGYTGS 505
           N P+                          LL + L+GV +  ++   +++K L+GY+G+
Sbjct: 413 NFPWDLDEALRRRLEKRIYIPLPTEQGREDLLKINLKGVELASDVKLAEVAKKLDGYSGA 472

Query: 506 DIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLS 565
           DI N+ RDAAMMS RR+I G    QI+ I +E+++LP T +DF  AI +  KSV+  DL 
Sbjct: 473 DITNVCRDAAMMSFRRRISGLNAEQIRMIPKEELELPPTMEDFTNAIKKVNKSVSNDDLE 532

Query: 566 K 566
           +
Sbjct: 533 R 533

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|242024677|ref|XP_002432753.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518238|gb|EEB20015.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 153/306 (50%), Positives = 181/306 (59%), Gaps = 35/306 (11%)

Query: 21  LNHMARLMDSLILDSFSPFSFTKITTTRRPVRMNANNTR---RQQSKQQHVTPQ----ML 73
           +  M R+M+SL+LD FSPF+FTKITTT RP +   +N R   +  SK   V P+      
Sbjct: 1   MGPMTRMMNSLVLDPFSPFAFTKITTTHRPTKAPNSNRRSGHKNNSKPSPVKPEHNNNTT 60

Query: 74  YRAKSQATYQEEKKPSANKEPDSIADRWINSLRKRDPEIQPTLPAIIPSRSRSCSHPTTL 133
               ++  YQ  K  S   +     DRWI SLR+RDPEIQPTLPAI   R R  S P  +
Sbjct: 61  NVNNNKYPYQSRKDDSDAGKKSVTNDRWIQSLRRRDPEIQPTLPAI-GVRGR-LSQPNIV 118

Query: 134 KKTTRSFGSNTSASSTKKER--------KLGFKPAVKKIIAANASENSVSHEANEKDGVF 185
             ++R   S    S T K R         +G    VKKII    + NS      E     
Sbjct: 119 --SSRKSRSVERTSKTPKNRLMMQNQNNTMGRTGNVKKIIQDFNTMNSPEDGPAED---- 172

Query: 186 RQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPE 245
                EK+F   GFE  L+E LEKDI+   PNV+WN+VAGL+EAKA+LQEAMVLP +MP+
Sbjct: 173 -----EKVFNGNGFESHLVEILEKDIILRKPNVKWNRVAGLSEAKALLQEAMVLPVLMPD 227

Query: 246 FFKE-------ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLL 298
           FFK         L     GTGKTMLAKAVATECGTTFFNVSSST+TSKYRGESEKLVRLL
Sbjct: 228 FFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTITSKYRGESEKLVRLL 287

Query: 299 FEMVSF 304
           FEM  F
Sbjct: 288 FEMARF 293

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357612799|gb|EHJ68174.1| putative Katanin p60 ATPase-containing subunit [Danaus plexippus]

 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 157/395 (39%), Positives = 206/395 (52%), Gaps = 104/395 (26%)

Query: 199 FEP------SLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--- 249
           FEP       L++ LE+DI+Q NPN++W+ +A L EAK +L+EA+VLP  MP+FFK    
Sbjct: 222 FEPPSAADGDLVDMLERDIVQKNPNIRWDDIADLAEAKRLLEEAVVLPMWMPDFFKGIRR 281

Query: 250 ----ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFL 305
                L     GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM  F 
Sbjct: 282 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFY 341

Query: 306 VGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSV 365
                             P+T F    +I  +  R    +   A  R +++        V
Sbjct: 342 A-----------------PSTIFI--DEIDSLCSRRGSDSEHEASRRVKSE------LLV 376

Query: 366 MVDGLGKG---PWSMVAVV-ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFI 421
            +DGLG     P  +V V+ AT+F W         E    R+ K      R Y P     
Sbjct: 377 QMDGLGSATDEPAKVVMVLAATNFPW------DIDEALRRRLEK------RIYIP----- 419

Query: 422 DEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCL 481
                L +  G             E L+Q++                            L
Sbjct: 420 -----LPTQEGR------------EALLQIN----------------------------L 434

Query: 482 EGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL 541
             V +D  +D   I+K L+GY+G+DI N+ RDA+MMS+RRKI G  P QIK++ +E++DL
Sbjct: 435 REVKVDPEVDLRLIAKKLDGYSGADITNVCRDASMMSMRRKIAGLKPEQIKQLAKEELDL 494

Query: 542 PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
           PVT +DF EA+++C KSV+  D+ KY +WM EFGS
Sbjct: 495 PVTRQDFLEALSKCNKSVSKGDIQKYLTWMAEFGS 529

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112522|ref|XP_001651818.1| aaa atpase [Aedes aegypti] gi|108878039|gb|EAT42264.1| AAEL006182-PA [Aedes aegypti]

 Score =  234 bits (598), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 155/348 (44%), Positives = 192/348 (55%), Gaps = 65/348 (18%)

Query: 21  LNHMARLMDSLILDSFSPFSFTKITTTRRPVRMNANNTRRQQSKQQHVTPQMLYRAKS-- 78
             HMAR+MD+LILD+ +PF+FTKITTT RP R++A+N     +     T      A S  
Sbjct: 90  FQHMARMMDTLILDNLAPFAFTKITTTHRPSRISASNGGPGGASMGVETTSTSNVAASCG 149

Query: 79  ----------QATYQEEKKPS---------------ANKEPDSIADRWINSLRKRDPEIQ 113
                     +    + K P+               A   P +   RWI+SLR+RDPE+Q
Sbjct: 150 PGGIGGGGSIRVNLHKNKIPTQEVHPNPRHAAMASNAASPPTATDSRWISSLRRRDPELQ 209

Query: 114 PTLPAIIPSRSRSCSHPT--------------TLKKTTRSFGSNTSASSTKK-ERKLGFK 158
           PTLP+I  S   S S  T              T ++++R+ G  +S   ++  ER    K
Sbjct: 210 PTLPSINNSNHHSTSSLTHQHSVGYTSSTNTPTERRSSRNSGQKSSLRKSRSVERIRARK 269

Query: 159 PAVKKII-----------AANASENSVSHEAN----EKDGVFRQDIREKIFYSTGFEPSL 203
            A  KI              +  + + S E N    +   V R D + KIF   G+E  L
Sbjct: 270 LATSKIKERPKKSSSEEGGGSDDQEATSVEENSPQQQHSPVKRID-KSKIFSPIGYETHL 328

Query: 204 IETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSH 256
           ++TLEKD+LQ NPNVQWN VAGL EAKAILQEA+VLP I+P+FF       K  L     
Sbjct: 329 VDTLEKDMLQKNPNVQWNDVAGLNEAKAILQEAVVLPVILPDFFRGIRRPWKGVLMVGPP 388

Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSF 304
           GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM  F
Sbjct: 389 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARF 436

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170030497|ref|XP_001843125.1| AAA family ATPase [Culex quinquefasciatus] gi|167867366|gb|EDS30749.1| AAA family ATPase [Culex quinquefasciatus]

 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 149/353 (42%), Positives = 192/353 (54%), Gaps = 70/353 (19%)

Query: 21  LNHMARLMDSLILDSFSPFSFTKITTTRRPVRMNANNTRRQQSKQQHVTPQM-------- 72
             HMAR+MD+LILD+ +PF+FTKITTT RP R++A N                       
Sbjct: 101 FQHMARMMDTLILDNLAPFAFTKITTTHRPSRISATNPGAGGGPGGGGPGPSIGGGGVPV 160

Query: 73  --LYRAKSQA------TYQEEKKPS-------------ANKEPDSIADRWINSLRKRDPE 111
             + +A S +      +   E  P+             A+  P +   RWI+SLR+RDPE
Sbjct: 161 IGMKKATSTSNVAAATSVHSEVHPNPHHHSHVASMASNASSPPTATDSRWISSLRRRDPE 220

Query: 112 IQPTLPAIIPSR------SRSCSHPTTLKKTT--------RSFGSNTSASSTKKERKLGF 157
           +QPTLP+I  S       + S +H  ++  T+        RS  ++   SS +K R +  
Sbjct: 221 LQPTLPSINNSNQHHSTSTSSLTHQNSVGYTSSTTTPTDRRSSRNSGQKSSLRKSRSVE- 279

Query: 158 KPAVKKIIAANASENSVSHEANEKDGVFRQDI-------------------REKIFYSTG 198
           +   +K+  +   E      + E  G   Q++                   + K+F S G
Sbjct: 280 RIRARKLATSKIKERPKKSSSEEGGGSDDQEVTSVEENSPQQQHSPVKRLEKSKMFNSIG 339

Query: 199 FEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEAL 251
           +E  L++TLEKD+LQ NPNVQWN VAGL EAKAILQEA+VLP I+P+FF       K  L
Sbjct: 340 YESHLVDTLEKDMLQKNPNVQWNDVAGLNEAKAILQEAVVLPVILPDFFRGIRRPWKGVL 399

Query: 252 ERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSF 304
                GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM  F
Sbjct: 400 MVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARF 452

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719677|ref|XP_001952578.2| PREDICTED: katanin p60 ATPase-containing subunit A1-like [Acyrthosiphon pisum]

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 124/244 (50%), Positives = 154/244 (63%), Gaps = 32/244 (13%)

Query: 365 VMVDGLGKGPWSMVAVVATH-----FTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTI 419
           +MV   G G   +   VAT      F          + G S ++ +     A+ ++PSTI
Sbjct: 230 LMVGPPGTGKTMLAKAVATECGTTFFNVSSSTMTSKYRGESEKLVRLLFEMAKIHSPSTI 289

Query: 420 FIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYED--KIIMILAATNHPYQ-- 475
           FIDEVDSLCS+RGS+ EHEASRRFKAELLI MDGLNSS  E+  + IM+LAATNHP+   
Sbjct: 290 FIDEVDSLCSLRGSEGEHEASRRFKAELLIHMDGLNSSSDEENNQSIMVLAATNHPWDID 349

Query: 476 -----------------------LLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLAR 512
                                  LL LCLEGV +D + D+  ++  L GYTGSDIAN+ R
Sbjct: 350 DAFRRRFEKRIYLPLPNDESRITLLKLCLEGVNLDDSFDYRFVANKLRGYTGSDIANVCR 409

Query: 513 DAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMN 572
           DAAMM +RRKI+GQTP QIK IK+ DIDLPVT +DF EA+ RCRK+VT  D+ KY SW++
Sbjct: 410 DAAMMGMRRKIVGQTPDQIKNIKRADIDLPVTVQDFNEAVERCRKTVTGQDIEKYQSWID 469

Query: 573 EFGS 576
           EFGS
Sbjct: 470 EFGS 473

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|55925351|ref|NP_001007432.1| katanin p60 ATPase-containing subunit A-like 1 [Danio rerio] gi|82232967|sp|Q5U3S1.1|KATL1_DANRE RecName: Full=Katanin p60 ATPase-containing subunit A-like 1; Short=Katanin p60 subunit A-like 1; AltName: Full=p60 katanin-like 1 gi|55250013|gb|AAH85416.1| Zgc:101696 [Danio rerio]

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 150/402 (37%), Positives = 209/402 (51%), Gaps = 100/402 (24%)

Query: 188 DIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF 247
           D+ +K F  TG++  L++ LE+DI+  NPN+ W+ +A L +AK +L+EA+VLP  MP+FF
Sbjct: 173 DVEQKKFDGTGYDSDLVDALERDIVSRNPNIHWDDIADLEDAKKLLREAVVLPMWMPDFF 232

Query: 248 KE-------ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
           K         L     GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE
Sbjct: 233 KGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 292

Query: 301 MVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGP 360
           M  F                   PTT F    +I  +  R        A  R +++    
Sbjct: 293 MARFYA-----------------PTTIFI--DEIDSICGRRGTSDEHEASRRVKSE---- 329

Query: 361 SIFSVMVDGLG-----KGPWSMVAVV-ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCY 414
               V +DG+G     + P  MV V+ AT+F W         E    R+ K      R Y
Sbjct: 330 --LLVQMDGVGGAQESEDPSKMVMVLAATNFPW------DIDEALRRRLEK------RIY 375

Query: 415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPY 474
            P          L + +G           +AEL                           
Sbjct: 376 IP----------LPTAKG-----------RAEL--------------------------- 387

Query: 475 QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 534
             L + L  V +  ++D    ++ +EGY+G+DI N+ RDA+MM++RR+I G +P +I+ +
Sbjct: 388 --LKINLREVDVASDVDLTVFAEKIEGYSGADITNVCRDASMMAMRRRIQGLSPEEIRAL 445

Query: 535 KQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
            ++++ +PVT +DF  A+ +  KSV+A DL KY+SWM+EFGS
Sbjct: 446 SKDELQMPVTMEDFELALKKISKSVSAADLEKYESWMSEFGS 487

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449269674|gb|EMC80425.1| Katanin p60 ATPase-containing subunit A-like 1 [Columba livia]

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 173/506 (34%), Positives = 237/506 (46%), Gaps = 137/506 (27%)

Query: 84  EEKKPSANKEPDSIADRWINSLRKRDPEIQPTLPAIIPSRSRSCSHPTTLKKTTRSFGSN 143
           E + P   K P     R +  LRK  P +QP  PA    R+ + S            G  
Sbjct: 106 EHRAPPQIKRPS----REVKPLRKESPGLQPRGPA---GRAHAVSK-----------GEK 147

Query: 144 TSASSTKKERKLGFKPAVKKIIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSL 203
           ++ S  ++ R  G    VK      + E     E  + DG              G++  L
Sbjct: 148 SAGSRERESRARGRDDKVK------SGEELGDGEIPKFDG-------------AGYDKDL 188

Query: 204 IETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE-------ALERHSH 256
           +E LE+DI+  NP++ W+ +A L EAK +L+EA+VLP  MP+FFK         L     
Sbjct: 189 VEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPP 248

Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYL 316
           GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM  F            
Sbjct: 249 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYA---------- 298

Query: 317 VGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKG--- 373
                  PTT F    +I  +  R        A  R +++        V +DG+G     
Sbjct: 299 -------PTTIFI--DEIDSICSRRGTSDEHEASRRVKSE------LLVQMDGVGGALEN 343

Query: 374 --PWSMVAVV-ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSM 430
             P  MV V+ AT+F W         E    R+ K      R Y P          L + 
Sbjct: 344 DDPSKMVMVLAATNFPW------DIDEALRRRLEK------RIYIP----------LPTA 381

Query: 431 RGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL 490
           +G           +AELL                              + L  V +D ++
Sbjct: 382 KG-----------RAELL-----------------------------KINLREVELDPDI 401

Query: 491 DFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFRE 550
              +I++ +EGY+G+DI N+ RDA++M++RR+I G TP +I+ + +E++ +PVT  DF  
Sbjct: 402 SLEEIAEKIEGYSGADITNVCRDASLMAMRRRINGLTPEEIRALSKEELQMPVTRGDFEL 461

Query: 551 AIARCRKSVTAHDLSKYDSWMNEFGS 576
           A+ +  KSV+A DL KY+ WM EFGS
Sbjct: 462 ALKKISKSVSAADLEKYEKWMAEFGS 487

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390178459|ref|XP_003736652.1| GA30160, isoform A [Drosophila pseudoobscura pseudoobscura] gi|388859454|gb|EIM52725.1| GA30160, isoform A [Drosophila pseudoobscura pseudoobscura]

 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 112/242 (46%), Positives = 157/242 (64%), Gaps = 30/242 (12%)

Query: 365 VMVDGLGKGPWSMVAVVATH-----FTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTI 419
           +MV   G G   +   VAT      F          + G S ++ +     AR YAPSTI
Sbjct: 368 LMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPSTI 427

Query: 420 FIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQ---- 475
           FIDE+D+LC+ RGSDSEHEASRRFKAELLIQMDGLN+S+ E+K+IM+LAATNHP+     
Sbjct: 428 FIDEIDALCASRGSDSEHEASRRFKAELLIQMDGLNASMQEEKVIMVLAATNHPWDIDEA 487

Query: 476 ---------------------LLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDA 514
                                LL LCL+ V +  N++   I + L+GY+GSDI+N+ RDA
Sbjct: 488 FRRRFEKRIYIPLPNEETRSALLKLCLKDVCLSPNINTSMIGEELQGYSGSDISNVCRDA 547

Query: 515 AMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEF 574
           +MM++RR I G+TP +IK+I++ED+DLP+T +DF++A  R +KSV+A D+++++ WM E+
Sbjct: 548 SMMAMRRLISGRTPEEIKQIRREDVDLPITLQDFQDARQRTKKSVSAEDVARFEKWMEEY 607

Query: 575 GS 576
           GS
Sbjct: 608 GS 609

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	577
FB|FBgn0037375	673	kat-60L1 "katanin p60-like 1"	0.199	0.170	0.688	1.2e-76
ZFIN|ZDB-GENE-041114-141	488	katnal1 "katanin p60 subunit A	0.447	0.528	0.373	5.3e-59
UNIPROTKB|E1BSZ5	489	KATNAL1 "Uncharacterized prote	0.331	0.390	0.438	1.7e-58
UNIPROTKB|E2QSK3	492	KATNAL1 "Uncharacterized prote	0.336	0.394	0.447	2.6e-58
UNIPROTKB|F6V168	490	KATNAL1 "Uncharacterized prote	0.336	0.395	0.451	1.9e-57
FB|FBgn0040208	572	Kat60 "Katanin 60" [Drosophila	0.299	0.302	0.468	3e-57
UNIPROTKB|Q9BW62	490	KATNAL1 "Katanin p60 ATPase-co	0.336	0.395	0.442	4.8e-57
UNIPROTKB|B5X3X5	486	katna1 "Katanin p60 ATPase-con	0.353	0.419	0.435	1.1e-56
UNIPROTKB|E1BHF2	490	KATNAL1 "Uncharacterized prote	0.336	0.395	0.447	1.4e-56
UNIPROTKB|E1BH39	491	KATNA1 "Uncharacterized protei	0.247	0.291	0.54	3.4e-56

FB|FBgn0037375 kat-60L1 "katanin p60-like 1" [Drosophila melanogaster (taxid:7227)]

 Score = 389 (142.0 bits), Expect = 1.2e-76, Sum P(4) = 1.2e-76
 Identities = 84/122 (68%), Positives = 92/122 (75%)

Query:   190 REKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE 249
             + K F   G+E  L++TLEKDILQ +P ++W  VAGL EAK ILQEA+VLP IMPEFFK 
Sbjct:   363 KAKHFSPLGYEVHLVDTLEKDILQRHPCIKWTDVAGLNEAKTILQEAVVLPVIMPEFFKG 422

Query:   250 -------ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMV 302
                     L     GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 
Sbjct:   423 IRRPWRGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMA 482

Query:   303 SF 304
              F
Sbjct:   483 RF 484

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0051013 "microtubule severing" evidence=ISS

GO:0008352 "katanin complex" evidence=ISS

GO:0005875 "microtubule associated complex" evidence=ISS

GO:0007017 "microtubule-based process" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0016322 "neuron remodeling" evidence=IMP

GO:0005874 "microtubule" evidence=IDA

GO:0050775 "positive regulation of dendrite morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-041114-141 katnal1 "katanin p60 subunit A-like 1" [Danio rerio (taxid:7955)]

 Score = 380 (138.8 bits), Expect = 5.3e-59, Sum P(2) = 5.3e-59
 Identities = 105/281 (37%), Positives = 140/281 (49%)

Query:   108 RDPEIQPTLPAIIPSRSR-SCSHPTTLKKTTRSFGSNTSASSTKKERKLGFKPAVKKIIA 166
             RDP++ P  P     R       P  L K  R               +   KP       
Sbjct:    94 RDPDVWPP-PTPAEHRGPVQVKKPVPLSKPQRKESPGMQHRGAVGRGQANIKPDRPNTRD 152

Query:   167 ANASE-NSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAG 225
                ++      + N ++G    D+ +K F  TG++  L++ LE+DI+  NPN+ W+ +A 
Sbjct:   153 GRGNKAKEEKSKRNAQEGA--ADVEQKKFDGTGYDSDLVDALERDIVSRNPNIHWDDIAD 210

Query:   226 LTEAKAILQEAMVLPTIMPEFFKE-------ALERHSHGTGKTMLAKAVATECGTTFFNV 278
             L +AK +L+EA+VLP  MP+FFK         L     GTGKTMLAKAVATECGTTFFNV
Sbjct:   211 LEDAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV 270

Query:   279 SSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYL--VGVLNGEPTTTFAYNKQILQ 336
             SSSTLTSKYRGESEKLVRLLFEM  F    ++  T ++  +  + G   T+  +     +
Sbjct:   271 SSSTLTSKYRGESEKLVRLLFEMARF----YAPTTIFIDEIDSICGRRGTSDEH-----E 321

Query:   337 MNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSM 377
              +RRV    L         QES      VMV      PW +
Sbjct:   322 ASRRVKSELLVQMDGVGGAQESEDPSKMVMVLAATNFPWDI 362

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008568 "microtubule-severing ATPase activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

UNIPROTKB|E1BSZ5 KATNAL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 370 (135.3 bits), Expect = 1.7e-58, Sum P(2) = 1.7e-58
 Identities = 92/210 (43%), Positives = 124/210 (59%)

Query:   108 RDPEIQPTLPAIIPSRSRSCSHPTTLKKTTRSFGSNTSASSTKKER-KLG-FKPAVKKII 165
             RDP + P  P  +P+  R+   P  +K+  R        S   + R  +G  +PAV+   
Sbjct:    94 RDPAVWPP-P--VPAEHRA---PPQIKRPNRGAKPLRKESPGLQPRGPVGRAQPAVRSDK 147

Query:   166 AANASENSVSHEANEKDG--VFRQDIREKI--FYSTGFEPSLIETLEKDILQNNPNVQWN 221
              A + +        +  G  + ++ + + +  F   G++  L+E LE+DI+  NP++ W+
Sbjct:   148 PAGSRDREPRARGRDDKGKKIPQEGVADDVLRFDGAGYDKDLVEALERDIVSRNPSIHWD 207

Query:   222 KVAGLTEAKAILQEAMVLPTIMPEFFKE-------ALERHSHGTGKTMLAKAVATECGTT 274
              +A L EAK +L+EA+VLP  MP+FFK         L     GTGKTMLAKAVATECGTT
Sbjct:   208 DIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT 267

Query:   275 FFNVSSSTLTSKYRGESEKLVRLLFEMVSF 304
             FFNVSSSTLTSKYRGESEKLVRLLFEM  F
Sbjct:   268 FFNVSSSTLTSKYRGESEKLVRLLFEMARF 297

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2QSK3 KATNAL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 377 (137.8 bits), Expect = 2.6e-58, Sum P(2) = 2.6e-58
 Identities = 94/210 (44%), Positives = 121/210 (57%)

Query:   108 RDPEI-QPTLPA-----IIPSRSRSCSHPTTLKKTTRSFGSNTSASSTKKERKLGFKPAV 161
             RDP +  P +PA     + P +  + S    L+   +   S     +T  E K+  +   
Sbjct:    94 RDPAVWPPPVPAEHRSTLFPRKKHTISSIDKLRNGNKIVVS-IRGHNTIAEEKVHDELDK 152

Query:   162 KKIIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWN 221
                  +  SEN +    N  DG    +I +  F   G++  L+E LE+DI+  NP++ W+
Sbjct:   153 ASQSRSKTSENKMRGRKNMHDGASDGEIPK--FDGAGYDKDLVEALERDIVSRNPSIHWD 210

Query:   222 KVAGLTEAKAILQEAMVLPTIMPEFFKE-------ALERHSHGTGKTMLAKAVATECGTT 274
              +A L EAK +L+EA+VLP  MP+FFK         L     GTGKTMLAKAVATECGTT
Sbjct:   211 DIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT 270

Query:   275 FFNVSSSTLTSKYRGESEKLVRLLFEMVSF 304
             FFNVSSSTLTSKYRGESEKLVRLLFEM  F
Sbjct:   271 FFNVSSSTLTSKYRGESEKLVRLLFEMARF 300

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|F6V168 KATNAL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 370 (135.3 bits), Expect = 1.9e-57, Sum P(2) = 1.9e-57
 Identities = 94/208 (45%), Positives = 115/208 (55%)

Query:   108 RDPEI-QPTLPA---IIPSRSRSCSHPTTLKKTTRSFGSNTSASSTKKERKLGFKPAVKK 163
             RDP +  P +PA     P   R       L+K     G+           K G KP+  +
Sbjct:    94 RDPAVWPPPVPAEHRAPPQIRRPNREVRPLRKEMPGVGARGPVGRAHPISK-GEKPSTSR 152

Query:   164 IIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKV 223
                  A         N  DG    +I +  F   G++  L+E LE+DI+  NP++ W+ +
Sbjct:   153 DKDYRARGRDDKGRKNMHDGASDGEIPK--FDGAGYDKDLVEALERDIVSRNPSIHWDDI 210

Query:   224 AGLTEAKAILQEAMVLPTIMPEFFKE-------ALERHSHGTGKTMLAKAVATECGTTFF 276
             A L EAK +L+EA+VLP  MP+FFK         L     GTGKTMLAKAVATECGTTFF
Sbjct:   211 ADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFF 270

Query:   277 NVSSSTLTSKYRGESEKLVRLLFEMVSF 304
             NVSSSTLTSKYRGESEKLVRLLFEM  F
Sbjct:   271 NVSSSTLTSKYRGESEKLVRLLFEMARF 298

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

FB|FBgn0040208 Kat60 "Katanin 60" [Drosophila melanogaster (taxid:7227)]

 Score = 359 (131.4 bits), Expect = 3.0e-57, Sum P(3) = 3.0e-57
 Identities = 89/190 (46%), Positives = 115/190 (60%)

Query:   124 SRSCSHPTTLKKTT--RSFGSNTSASSTKKERKLGFKPAVKKIIAANASENSVSHEANEK 181
             S S + P+   +TT  R+ G   S S+T + R      A     AA   EN     A E+
Sbjct:   202 STSATAPSGGARTTNGRAGGRKLSTSNTNEARDDDSTAAGNNGGAAGDGENGDPQAAQEE 261

Query:   182 DGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPT 241
             +  F+ +           E  L++ LE+DILQ +P V+W+ +A L +AK +L+EA+VLP 
Sbjct:   262 ERKFQTN--------NHIEAELVDILERDILQKDPKVRWSDIADLHDAKRLLEEAVVLPM 313

Query:   242 IMPEFFKE-------ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKL 294
             +MP++FK         L     GTGKTMLAKAVATECGTTFFNVSS+TLTSKYRGESEK+
Sbjct:   314 LMPDYFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKM 373

Query:   295 VRLLFEMVSF 304
             VRLLFEM  F
Sbjct:   374 VRLLFEMARF 383

GO:0008352 "katanin complex" evidence=ISS;NAS

GO:0051013 "microtubule severing" evidence=ISS;IDA;IMP;NAS

GO:0007017 "microtubule-based process" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008568 "microtubule-severing ATPase activity" evidence=IDA;IMP

GO:0005813 "centrosome" evidence=IDA

GO:0070462 "plus-end specific microtubule depolymerization" evidence=IMP

GO:0000091 "mitotic anaphase A" evidence=IMP

GO:0005694 "chromosome" evidence=IDA

GO:0000070 "mitotic sister chromatid segregation" evidence=IMP

GO:0022416 "chaeta development" evidence=IGI

GO:0035220 "wing disc development" evidence=IGI

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

GO:0007019 "microtubule depolymerization" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0030336 "negative regulation of cell migration" evidence=IMP

GO:0031252 "cell leading edge" evidence=IDA

UNIPROTKB|Q9BW62 KATNAL1 "Katanin p60 ATPase-containing subunit A-like 1" [Homo sapiens (taxid:9606)]

 Score = 364 (133.2 bits), Expect = 4.8e-57, Sum P(2) = 4.8e-57
 Identities = 92/208 (44%), Positives = 115/208 (55%)

Query:   108 RDPEI-QPTLPA---IIPSRSRSCSHPTTLKKTTRSFGSNTSASSTKKERKLGFKPAVKK 163
             RDP +  P +PA     P   R       L+K     G+           K   KP+  +
Sbjct:    94 RDPAVWPPPVPAEHRAPPQIRRPNREVRPLRKEMAGVGARGPVGRAHPISK-SEKPSTSR 152

Query:   164 IIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKV 223
                  A         N +DG    ++ +  F   G++  L+E LE+DI+  NP++ W+ +
Sbjct:   153 DKDYRARGRDDKGRKNMQDGASDGEMPK--FDGAGYDKDLVEALERDIVSRNPSIHWDDI 210

Query:   224 AGLTEAKAILQEAMVLPTIMPEFFKE-------ALERHSHGTGKTMLAKAVATECGTTFF 276
             A L EAK +L+EA+VLP  MP+FFK         L     GTGKTMLAKAVATECGTTFF
Sbjct:   211 ADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFF 270

Query:   277 NVSSSTLTSKYRGESEKLVRLLFEMVSF 304
             NVSSSTLTSKYRGESEKLVRLLFEM  F
Sbjct:   271 NVSSSTLTSKYRGESEKLVRLLFEMARF 298

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0008568 "microtubule-severing ATPase activity" evidence=IEA

UNIPROTKB|B5X3X5 katna1 "Katanin p60 ATPase-containing subunit A1" [Salmo salar (taxid:8030)]

 Score = 368 (134.6 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
 Identities = 98/225 (43%), Positives = 122/225 (54%)

Query:    87 KPSANKEPDSIADRWINSLRKRDPEIQPTLPAIIPSRSRSCSHPTTLKKTTRSFGSNTSA 146
             KP +N+  D I D W   + +R   +    P + P +  S  H   L           S 
Sbjct:    84 KPPSNQ--DGINDIWPVQVERRSSPLPVRRPPV-PYKD-SKPHNNRLSVAGVRAQHRQSP 139

Query:   147 SSTKKERKLGFKPAVKKIIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIET 206
                  +R    K   KK   A   ++    E +EK+         K F   G++  LIE 
Sbjct:   140 RGANGDRAKPLKGKEKK--EAKPKDDKNKAEVSEKE--------VKRFDGQGYDKDLIEA 189

Query:   207 LEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE-------ALERHSHGTG 259
             LE+DI+  NPNV+W+ +A L EAK +L+EA+VLP  MPEFFK         L     GTG
Sbjct:   190 LERDIISQNPNVKWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTG 249

Query:   260 KTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSF 304
             KT+LAKAVATEC TTFFNVSSSTLTSKYRGESEKLVR+LFEM  F
Sbjct:   250 KTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRILFEMARF 294

GO:0000922 "spindle pole" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005819 "spindle" evidence=ISS

GO:0030496 "midbody" evidence=ISS

UNIPROTKB|E1BHF2 KATNAL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 361 (132.1 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
 Identities = 93/208 (44%), Positives = 114/208 (54%)

Query:   108 RDPEI-QPTLPA---IIPSRSRSCSHPTTLKKTTRSFGSNTSASSTKKERKLGFKPAVKK 163
             RDP +  P +PA     P   R       L+K     G+           K   KP+  +
Sbjct:    94 RDPAVWPPPVPAEHKAPPQIRRPNREVRPLRKEMPGGGARGPVGRAHPISK-SEKPSTSR 152

Query:   164 IIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKV 223
                  A         N +DG    +I +  F    ++  L+E LE+DI+  NP+V W+ +
Sbjct:   153 DKDCRARGRDDKGRKNMQDGTSDGEIPK--FDGAAYDKDLVEALERDIVSRNPSVHWDDI 210

Query:   224 AGLTEAKAILQEAMVLPTIMPEFFKE-------ALERHSHGTGKTMLAKAVATECGTTFF 276
             A L EAK +L+EA+VLP  MP+FFK         L     GTGKTMLAKAVATECGTTFF
Sbjct:   211 ADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFF 270

Query:   277 NVSSSTLTSKYRGESEKLVRLLFEMVSF 304
             NVSSSTLTSKYRGESEKLVRLLFEM  F
Sbjct:   271 NVSSSTLTSKYRGESEKLVRLLFEMARF 298

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|E1BH39 KATNA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 370 (135.3 bits), Expect = 3.4e-56, Sum P(2) = 3.4e-56
 Identities = 81/150 (54%), Positives = 97/150 (64%)

Query:   162 KKIIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWN 221
             K + +    E +   E   K      +     F STG++  L+E LE+DI+  NPNV+W+
Sbjct:   150 KAVRSREKKEQNKGREEKNKSPAAATEPETNKFDSTGYDKDLVEALERDIISQNPNVRWD 209

Query:   222 KVAGLTEAKAILQEAMVLPTIMPEFFKE-------ALERHSHGTGKTMLAKAVATECGTT 274
              +A L EAK +L+EA+VLP  MPEFFK         L     GTGKT+LAKAVATEC TT
Sbjct:   210 DIADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTT 269

Query:   275 FFNVSSSTLTSKYRGESEKLVRLLFEMVSF 304
             FFNVSSSTLTSKYRGESEKLVRLLFEM  F
Sbjct:   270 FFNVSSSTLTSKYRGESEKLVRLLFEMARF 299

GO:0051329 "interphase of mitotic cell cycle" evidence=IEA

GO:0051013 "microtubule severing" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0031122 "cytoplasmic microtubule organization" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0008568 "microtubule-severing ATPase activity" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	577
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	2e-21
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	3e-20
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	3e-20
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	3e-16
COG1222	406	COG1222, RPT1, ATP-dependent 26S proteasome regula	1e-15
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	2e-15
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	2e-15
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	5e-15
TIGR01242	364	TIGR01242, 26Sp45, 26S proteasome subunit P45 fami	4e-14
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	2e-13
COG1222	406	COG1222, RPT1, ATP-dependent 26S proteasome regula	5e-13
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	2e-12
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	9e-12
PTZ00454	398	PTZ00454, PTZ00454, 26S protease regulatory subuni	2e-10
TIGR01241	495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	2e-10
PTZ00361	438	PTZ00361, PTZ00361, 26 proteosome regulatory subun	4e-10
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	3e-09
TIGR03689	512	TIGR03689, pup_AAA, proteasome ATPase	7e-09
PRK10733	644	PRK10733, hflB, ATP-dependent metalloprotease; Rev	2e-08
COG0465	596	COG0465, HflB, ATP-dependent Zn proteases [Posttra	5e-08
TIGR01242	364	TIGR01242, 26Sp45, 26S proteasome subunit P45 fami	3e-07
PTZ00454	398	PTZ00454, PTZ00454, 26S protease regulatory subuni	3e-07
TIGR01241	495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	7e-07
COG1223	368	COG1223, COG1223, Predicted ATPase (AAA+ superfami	3e-06
CHL00176	638	CHL00176, ftsH, cell division protein; Validated	7e-06
CHL00176	638	CHL00176, ftsH, cell division protein; Validated	8e-06
pfam09336	62	pfam09336, Vps4_C, Vps4 C terminal oligomerisation	2e-05
COG0465	596	COG0465, HflB, ATP-dependent Zn proteases [Posttra	8e-05
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	2e-04
PRK10733	644	PRK10733, hflB, ATP-dependent metalloprotease; Rev	0.002
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	0.002
PTZ00361	438	PTZ00361, PTZ00361, 26 proteosome regulatory subun	0.004

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 97.2 bits (242), Expect = 2e-21
 Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 53/192 (27%)

Query: 401 GRINKN--SLFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS 457
           G   KN   LF+ AR  APS IFIDE+DSL S RG  SE  + RR   +LL ++DG+  +
Sbjct: 318 GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRG-PSEDGSGRRVVGQLLTELDGIEKA 376

Query: 458 LYEDKIIMILAATNHP---------------------------YQLLTLCLEGVVIDV-- 488
             E   ++++AATN P                            ++  + L      +  
Sbjct: 377 --EG--VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAE 432

Query: 489 NLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDF 548
           ++D  +++++ EGY+G+DIA L R+AA+ ++R                E     VT  DF
Sbjct: 433 DVDLEELAEITEGYSGADIAALVREAALEALR----------------EARRREVTLDDF 476

Query: 549 REAIARCRKSVT 560
            +A+ + + SVT
Sbjct: 477 LDALKKIKPSVT 488

Length = 494

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 93.7 bits (233), Expect = 3e-20
 Identities = 46/113 (40%), Positives = 63/113 (55%), Gaps = 9/113 (7%)

Query: 199 FEPSLIETL-EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH- 256
           FE +L + L  + +L  + +V  + + GL EAK  L+EA+  P   PE F++   R    
Sbjct: 219 FEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKG 278

Query: 257 -------GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMV 302
                  GTGKT+LAKAVA E  + F +V  S L SK+ GESEK +R LFE  
Sbjct: 279 VLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKA 331

Length = 494

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 94.6 bits (235), Expect = 3e-20
 Identities = 52/206 (25%), Positives = 99/206 (48%), Gaps = 32/206 (15%)

Query: 398 GHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS 457
           G S +  +    +AR  AP+ IF DE+D++   RG+  +   + R   +LL +MDG+   
Sbjct: 529 GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ-- 586

Query: 458 LYEDKIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNL 490
             E   ++++AATN P                            ++  +    + +  ++
Sbjct: 587 --ELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV 644

Query: 491 DFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDI-DLPVTEKDFR 549
           D  ++++M EGYTG+DI  + R+AAM ++R  I      +++  ++E + DL V  + F 
Sbjct: 645 DLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFL 704

Query: 550 EAIARCRKSVTAHDLSKYDSWMNEFG 575
           EA+ + + SV+  D+ +Y+    E  
Sbjct: 705 EALKKVKPSVSKEDMLRYERLAKELK 730

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 81.9 bits (202), Expect = 3e-16
 Identities = 46/109 (42%), Positives = 61/109 (55%), Gaps = 12/109 (11%)

Query: 200 EPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------AL 251
           EPS I    +++L   PNV+W+ + GL E K  L+EA+  P   PE F++         L
Sbjct: 436 EPSAI----REVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVL 491

Query: 252 ERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
                GTGKT+LAKAVATE G  F  V    + SK+ GESEK +R +F 
Sbjct: 492 LFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFR 540

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 78.8 bits (195), Expect = 1e-15
 Identities = 39/94 (41%), Positives = 50/94 (53%), Gaps = 8/94 (8%)

Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
           P+V +  + GL E    ++E + LP   PE F+E         L     GTGKT+LAKAV
Sbjct: 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAV 205

Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           A +   TF  V  S L  KY GE  +LVR LFE+
Sbjct: 206 ANQTDATFIRVVGSELVQKYIGEGARLVRELFEL 239

Length = 406

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score = 78.3 bits (194), Expect = 2e-15
 Identities = 41/94 (43%), Positives = 51/94 (54%), Gaps = 8/94 (8%)

Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
           PNV +  + GL E    ++EA+ LP   PE F+E         L     GTGKT+LAKAV
Sbjct: 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAV 185

Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           A E   TF  V  S L  K+ GE  +LVR LFE+
Sbjct: 186 AHETNATFIRVVGSELVQKFIGEGARLVRELFEL 219

Length = 389

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 72.6 bits (179), Expect = 2e-15
 Identities = 29/47 (61%), Positives = 31/47 (65%)

Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVS 303
           GTGKT LAKAVA E G  F  +S S L SKY GESEK +R LFE   
Sbjct: 8   GTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAK 54

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 78.0 bits (192), Expect = 5e-15
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 34/173 (19%)

Query: 415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP- 473
           APS IFIDE+D++   R  +   E  +R  A+LL  MDGL       ++I+I  ATN P 
Sbjct: 271 APSIIFIDEIDAIAPKR-EEVTGEVEKRVVAQLLTLMDGLKG---RGRVIVI-GATNRPD 325

Query: 474 --------------------------YQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDI 507
                                      ++L +    + +  ++D  K++++  G+ G+D+
Sbjct: 326 ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADL 385

Query: 508 ANLARDAAMMSIRRKI-MGQTPAQIKEIKQEDID-LPVTEKDFREAIARCRKS 558
           A LA++AAM ++RR I  G+   + +EI  E +  L VT KDF EA+     S
Sbjct: 386 AALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPS 438

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family

 Score = 74.1 bits (182), Expect = 4e-14
 Identities = 41/94 (43%), Positives = 51/94 (54%), Gaps = 8/94 (8%)

Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
           PNV +  + GL E    ++EA+ LP   PE F+E         L     GTGKT+LAKAV
Sbjct: 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAV 176

Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           A E   TF  V  S L  KY GE  +LVR +FE+
Sbjct: 177 AHETNATFIRVVGSELVRKYIGEGARLVREIFEL 210

Many proteins may score above the trusted cutoff because an internal. Length = 364

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score = 72.2 bits (178), Expect = 2e-13
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 53/176 (30%)

Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMR---GSDSEHEASRRFKAELLIQMDGLNSSLYEDKI 463
           LF+ AR  APS IFIDE+D++ + R   G+  + E  R    +LL +MDG +      KI
Sbjct: 216 LFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTL-MQLLAEMDGFD-PRGNVKI 273

Query: 464 IMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKIS 496
           I   AATN                              ++L +    + +  ++D  +++
Sbjct: 274 I---AATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELA 330

Query: 497 KMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAI 552
           ++ EG +G+D+  +  +A M +IR           +          VT +DF +AI
Sbjct: 331 ELTEGASGADLKAICTEAGMFAIRDD---------RTE--------VTMEDFLKAI 369

Length = 389

>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 70.8 bits (174), Expect = 5e-13
 Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 57/180 (31%)

Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASR---RFKAELLIQMDGLNSSLYEDKI 463
           LF+ AR  APS IFIDE+D++ + R  DS     R   R   ELL Q+DG +        
Sbjct: 236 LFELAREKAPSIIFIDEIDAIGAKR-FDSGTSGDREVQRTMLELLNQLDGFDPR----GN 290

Query: 464 IMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKIS 496
           + ++ ATN P                            ++L +    + +  ++D   ++
Sbjct: 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLA 350

Query: 497 KMLEGYTGSDIANLARDAAMMSIR--RKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554
           ++ EG++G+D+  +  +A M +IR  R                     VT +DF +A+ +
Sbjct: 351 RLTEGFSGADLKAICTEAGMFAIRERRDE-------------------VTMEDFLKAVEK 391

Length = 406

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 69.6 bits (170), Expect = 2e-12
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 8/93 (8%)

Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
           P V +  + GL EAK  ++E + LP   PE F+          L     GTGKT+LAKAV
Sbjct: 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAV 232

Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
           A E G  F +++   + SKY GESE+ +R +F+
Sbjct: 233 ANEAGAYFISINGPEIMSKYYGESEERLREIFK 265

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 62.2 bits (152), Expect = 9e-12
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 410 QARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAA 469
            A+  AP  IFIDE+D+L   RGS      SRR   +LL ++DG  SS      ++++AA
Sbjct: 52  AAKKLAPCVIFIDEIDALAGSRGS-GGDSESRRVVNQLLTELDGFTSS---LSKVIVIAA 107

Query: 470 TNHPYQL 476
           TN P +L
Sbjct: 108 TNRPDKL 114

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 11/108 (10%)

Query: 202 SLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALER 253
           S I+ L+       P+V ++ + GL   K  ++EA+ LP   PE +++         L  
Sbjct: 129 SSIQLLQMS---EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLY 185

Query: 254 HSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
              GTGKTMLAKAVA     TF  V  S    KY GE  ++VR +F +
Sbjct: 186 GPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRL 233

Length = 398

>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 51/177 (28%)

Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKII 464
           LF QA+  AP  IFIDE+D++   RG+     ++   +   +LL++MDG  ++     +I
Sbjct: 139 LFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN---TGVI 195

Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
            ++AATN P                            ++L +  +   +  ++D   +++
Sbjct: 196 -VIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVAR 254

Query: 498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554
              G++G+D+ANL  +AA+++ R+    +T               +T  D  EAI R
Sbjct: 255 RTPGFSGADLANLLNEAALLAARK---NKT--------------EITMNDIEEAIDR 294

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495

>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional

 Score = 61.7 bits (150), Expect = 4e-10
 Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
           P   +  + GL +    ++EA+ LP   PE + +         +     GTGKT+LAKAV
Sbjct: 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAV 237

Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLF 299
           A E   TF  V  S L  KY G+  KLVR LF
Sbjct: 238 ANETSATFLRVVGSELIQKYLGDGPKLVRELF 269

Length = 438

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 48/173 (27%), Positives = 68/173 (39%), Gaps = 40/173 (23%)

Query: 411 ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL------------ 458
           A   APS IFIDE+D+L   R SD   E  RR  A+LL  MDGL                
Sbjct: 72  AEKLAPSIIFIDEIDALAPKRSSDQG-EVERRVVAQLLALMDGLKRGQVIVIGATNRPDG 130

Query: 459 ---------YEDKIIMI----LAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGS 505
                      D+ I +     A      Q+ T  +    +        ++    G +G+
Sbjct: 131 LDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMF---LGPPGTGKTLAARTVGKSGA 187

Query: 506 DIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS 558
           D+  LA++AA+  +RR I        + I        VTE DF EA+ +   S
Sbjct: 188 DLGALAKEAALRELRRAI----DLVGEYIG-------VTEDDFEEALKKVLPS 229

Length = 494

>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase

 Score = 57.8 bits (140), Expect = 7e-09
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 18/120 (15%)

Query: 199 FEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------A 250
           FE      +E  +L+  P+V +  + GL      +++A+ LP + PE ++E         
Sbjct: 160 FEAIPRTEVEDLVLEEVPDVTYADIGGLGSQIEQIRDAVELPFLHPELYREYGLKPPKGV 219

Query: 251 LERHSHGTGKTMLAKAVATECGTT----------FFNVSSSTLTSKYRGESEKLVRLLFE 300
           L     G GKT++AKAVA                F N+    L +KY GE+E+ +RL+F+
Sbjct: 220 LLYGPPGCGKTLIAKAVANSLAARIGAEGGGKSYFLNIKGPELLNKYVGETERQIRLIFQ 279

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512

>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed

 Score = 57.0 bits (137), Expect = 2e-08
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 33/140 (23%)

Query: 410 QARCYAPSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMIL 467
           QA+  AP  IFIDE+D++   RG+     H+   +   ++L++MDG       ++ I+++
Sbjct: 239 QAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG----NEGIIVI 294

Query: 468 AATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISKMLE 500
           AATN P                            Q+L + +  V +  ++D   I++   
Sbjct: 295 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTP 354

Query: 501 GYTGSDIANLARDAAMMSIR 520
           G++G+D+ANL  +AA+ + R
Sbjct: 355 GFSGADLANLVNEAALFAAR 374

Length = 644

>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

 Score = 55.4 bits (134), Expect = 5e-08
 Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 56/178 (31%)

Query: 409 FQARCYAPSTIFIDEVDSL-----CSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKI 463
            QA+  AP  IFIDE+D++       + G + E E +     +LL++MDG   +    + 
Sbjct: 236 EQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQT---LNQLLVEMDGFGGN----EG 288

Query: 464 IMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKIS 496
           ++++AATN P                            Q+L +  +   +  ++D  KI+
Sbjct: 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIA 348

Query: 497 KMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554
           +   G++G+D+ANL  +AA+++ RR             K+E     +T +D  EAI R
Sbjct: 349 RGTPGFSGADLANLLNEAALLAARRN------------KKE-----ITMRDIEEAIDR 389

Length = 596

>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 36/145 (24%)

Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMR---GSDSEHEASRRFKAELLIQMDGLNSSLYEDKI 463
           +F+ A+  APS IFIDE+D++ + R   G+  + E  R    +LL ++DG +      K+
Sbjct: 207 IFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTL-MQLLAELDGFD-PRGNVKV 264

Query: 464 IMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKIS 496
           I   AATN P                            ++L +    + +  ++D   I+
Sbjct: 265 I---AATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIA 321

Query: 497 KMLEGYTGSDIANLARDAAMMSIRR 521
           KM EG +G+D+  +  +A M +IR 
Sbjct: 322 KMTEGASGADLKAICTEAGMFAIRE 346

Many proteins may score above the trusted cutoff because an internal. Length = 364

>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 46/178 (25%)

Query: 376 SMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMR---- 431
           + + VV + F        Q + G   R+ ++    AR  APS IFIDEVDS+ + R    
Sbjct: 206 TFIRVVGSEFV-------QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ 258

Query: 432 -GSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL 490
            G+D E    +R   ELL QMDG + +    K+IM   ATN    L    L    +D  +
Sbjct: 259 TGADRE---VQRILLELLNQMDGFDQTT-NVKVIM---ATNRADTLDPALLRPGRLDRKI 311

Query: 491 DF------HK-------ISKM-------LEGY-------TGSDIANLARDAAMMSIRR 521
           +F       K        SKM       LE +       + +DIA + ++A M ++R+
Sbjct: 312 EFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK 369

Length = 398

>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH

 Score = 51.5 bits (124), Expect = 7e-07
 Identities = 36/99 (36%), Positives = 44/99 (44%), Gaps = 21/99 (21%)

Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------------ALERHSHGTGKT 261
           P V +  VAG+ EAK  L E +       +F K                L     GTGKT
Sbjct: 50  PKVTFKDVAGIDEAKEELMEIV-------DFLKNPSKFTKLGAKIPKGVLLVGPPGTGKT 102

Query: 262 MLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
           +LAKAVA E G  FF++S S     + G     VR LFE
Sbjct: 103 LLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE 141

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495

>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIM--PEFFKEALERH-----SHGTGKTMLAKAVA 268
            ++  + V G  EAK   ++  ++   +  PE F +   ++       GTGKTM+AKA+A
Sbjct: 116 SDITLDDVIGQEEAK---RKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALA 172

Query: 269 TECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVS 303
            E       V ++ L  ++ G+  + +  L+E   
Sbjct: 173 NEAKVPLLLVKATELIGEHVGDGARRIHELYERAR 207

Length = 368

>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVAT 269
           + +  +AG+ EAK   +E +      PE F        K  L     GTGKT+LAKA+A 
Sbjct: 180 ITFRDIAGIEEAKEEFEEVVSFLK-KPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 238

Query: 270 ECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
           E    FF++S S     + G     VR LF+
Sbjct: 239 EAEVPFFSISGSEFVEMFVGVGAARVRDLFK 269

Length = 638

>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated

 Score = 48.5 bits (116), Expect = 8e-06
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 34/156 (21%)

Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLNSSLYEDKII 464
           LF +A+  +P  +FIDE+D++   RG+     ++   +   +LL +MDG       +K +
Sbjct: 267 LFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK----GNKGV 322

Query: 465 MILAATNHPYQLLTLCLEGVVID----VNLDF----------HKISKMLE---------- 500
           +++AATN    L    L     D    V+L            H  +K L           
Sbjct: 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIAR 382

Query: 501 ---GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKE 533
              G++G+D+ANL  +AA+++ RRK    T  +I  
Sbjct: 383 RTPGFSGADLANLLNEAAILTARRKKATITMKEIDT 418

Length = 638

>gnl|CDD|204202 pfam09336, Vps4_C, Vps4 C terminal oligomerisation domain

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 15/34 (44%), Positives = 24/34 (70%)

Query: 542 PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 575
           P+T KDF +A+A  + +V+  DL K++ + NEFG
Sbjct: 29  PLTMKDFIKALATTKPTVSKDDLEKHEEFTNEFG 62

This domain is found at the C terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation. Length = 62

>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

 Score = 45.4 bits (108), Expect = 8e-05
 Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEA---LERH-----SHGTG 259
            K  L++   V +  VAG+ EAK  L E +V     P+ ++     + +        GTG
Sbjct: 137 AKLYLEDQVKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTG 195

Query: 260 KTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
           KT+LAKAVA E G  FF++S S     + G     VR LFE
Sbjct: 196 KTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE 236

Length = 596

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 257 GTGKTMLAKAVATEC---GTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           GTGKT LA+A+A E    G  F  +++S L             L+  +
Sbjct: 29  GTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLL 76

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 20/44 (45%), Positives = 25/44 (56%)

Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
           GTGKT+LAKA+A E    FF +S S     + G     VR +FE
Sbjct: 195 GTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFE 238

Length = 644

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 12/76 (15%)

Query: 402 RINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYED 461
            + +     A    P  +FIDE+DSL            SR  +  LL  ++ LN    + 
Sbjct: 71  FLVRLLFELAEKAKPGVLFIDEIDSL------------SRGAQNALLRVLETLNDLRIDR 118

Query: 462 KIIMILAATNHPYQLL 477
           + + ++ ATN P    
Sbjct: 119 ENVRVIGATNRPLLGD 134

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 8/60 (13%)

Query: 415 APSTIFIDEVDSLCSMR---GSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATN 471
           APS +FIDE+D++ + R    S  E E  R    ELL Q+DG +S   + K+IM   ATN
Sbjct: 276 APSIVFIDEIDAIGTKRYDATSGGEKEIQRTM-LELLNQLDGFDSR-GDVKVIM---ATN 330

Length = 438

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	577
KOG0738|consensus	491		100.0
KOG0733|consensus	802		100.0
KOG0730|consensus	693		100.0
KOG0736|consensus	953		100.0
KOG0739|consensus	439		100.0
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	100.0
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	100.0
KOG0737|consensus	386		100.0
KOG0740|consensus	428		100.0
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	100.0
KOG0734|consensus	752		100.0
KOG0728|consensus	404		100.0
KOG0735|consensus	952		100.0
KOG0731|consensus	774		100.0
CHL00195	489	ycf46 Ycf46; Provisional	100.0
KOG0727|consensus	408		100.0
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	100.0
KOG0729|consensus	435		100.0
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	100.0
KOG0726|consensus	440		99.98
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.98
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.98
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.97
KOG0652|consensus	424		99.97
KOG0741|consensus	744		99.97
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.97
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.96
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.96
CHL00176	638	ftsH cell division protein; Validated	99.96
KOG0651|consensus	388		99.95
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	99.95
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.95
CHL00206	2281	ycf2 Ycf2; Provisional	99.95
KOG0733|consensus	802		99.94
KOG0732|consensus	1080		99.94
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.93
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.89
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.88
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.87
KOG2004|consensus	906		99.86
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.86
PF00004	132	AAA: ATPase family associated with various cellula	99.82
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.76
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.76
KOG0730|consensus	693		99.76
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.73
KOG0744|consensus	423		99.72
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.72
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.71
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.7
KOG0736|consensus	953		99.69
CHL00181	287	cbbX CbbX; Provisional	99.68
CHL00095	821	clpC Clp protease ATP binding subunit	99.68
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.67
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.65
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.64
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.62
KOG0742|consensus	630		99.62
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.62
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.62
KOG0735|consensus	952		99.61
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.61
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.59
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.59
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	99.59
KOG0743|consensus	457		99.58
PRK10865	857	protein disaggregation chaperone; Provisional	99.57
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.55
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	99.52
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.51
KOG2028|consensus	554		99.51
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	99.51
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	99.49
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	99.48
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	99.48
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.48
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	99.48
KOG1051|consensus	898		99.48
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.47
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	99.46
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	99.46
PRK13342	413	recombination factor protein RarA; Reviewed	99.44
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	99.44
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	99.44
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	99.44
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	99.43
PRK04195	482	replication factor C large subunit; Provisional	99.43
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	99.42
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	99.41
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	99.41
CHL00095	821	clpC Clp protease ATP binding subunit	99.41
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	99.41
PLN03025	319	replication factor C subunit; Provisional	99.4
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.4
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.38
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	99.38
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	99.38
KOG0989|consensus	346		99.38
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.38
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	99.37
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	99.37
PRK10865	857	protein disaggregation chaperone; Provisional	99.36
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	99.36
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	99.36
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.36
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	99.35
PRK12402	337	replication factor C small subunit 2; Reviewed	99.35
PHA02544	316	44 clamp loader, small subunit; Provisional	99.35
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	99.34
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	99.34
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	99.33
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.33
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	99.31
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.3
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	99.29
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	99.29
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	99.28
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.28
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	99.28
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	99.28
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	99.27
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	99.26
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.26
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	99.26
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	99.26
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	99.25
KOG0745|consensus	564		99.24
PRK13341	725	recombination factor protein RarA/unknown domain f	99.22
PRK00440	319	rfc replication factor C small subunit; Reviewed	99.21
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.2
COG2204	464	AtoC Response regulator containing CheY-like recei	99.2
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	99.19
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.18
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.18
COG1221	403	PspF Transcriptional regulators containing an AAA-	99.16
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.16
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	99.15
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	99.14
PRK00149	450	dnaA chromosomal replication initiation protein; R	99.14
COG0714	329	MoxR-like ATPases [General function prediction onl	99.1
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.07
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	99.06
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	99.04
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.04
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	99.03
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.0
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	99.0
KOG1969|consensus	877		98.99
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.98
PRK15424	538	propionate catabolism operon regulatory protein Pr	98.98
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	98.97
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.96
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	98.96
PRK12422	445	chromosomal replication initiation protein; Provis	98.96
PRK07471	365	DNA polymerase III subunit delta'; Validated	98.95
PF07726	131	AAA_3: ATPase family associated with various cellu	98.94
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	98.93
PRK11608	326	pspF phage shock protein operon transcriptional ac	98.93
PRK05022	509	anaerobic nitric oxide reductase transcription reg	98.92
smart00382	148	AAA ATPases associated with a variety of cellular	98.91
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.9
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.88
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	98.88
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	98.86
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	98.86
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	98.85
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.85
PRK06893	229	DNA replication initiation factor; Validated	98.85
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	98.85
PRK09112	351	DNA polymerase III subunit delta'; Validated	98.85
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	98.82
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	98.81
PRK13531	498	regulatory ATPase RavA; Provisional	98.81
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.8
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	98.8
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	98.8
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.79
PRK13765	637	ATP-dependent protease Lon; Provisional	98.79
PHA02244	383	ATPase-like protein	98.77
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	98.73
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	98.71
COG0606	490	Predicted ATPase with chaperone activity [Posttran	98.69
PRK15115	444	response regulator GlrR; Provisional	98.69
PRK08084	235	DNA replication initiation factor; Provisional	98.68
PRK08058	329	DNA polymerase III subunit delta'; Validated	98.68
KOG1942|consensus	456		98.68
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	98.68
PRK07399	314	DNA polymerase III subunit delta'; Validated	98.68
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	98.68
PRK05642	234	DNA replication initiation factor; Validated	98.67
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	98.64
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.64
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	98.63
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.61
PRK04132	846	replication factor C small subunit; Provisional	98.61
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.6
KOG0991|consensus	333		98.6
PRK05707	328	DNA polymerase III subunit delta'; Validated	98.6
smart00350	509	MCM minichromosome maintenance proteins.	98.56
PRK08727	233	hypothetical protein; Validated	98.55
PRK10365	441	transcriptional regulatory protein ZraR; Provision	98.54
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	98.48
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	98.48
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	98.48
KOG0741|consensus	744		98.48
PRK12377	248	putative replication protein; Provisional	98.47
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.45
PRK06620	214	hypothetical protein; Validated	98.42
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.42
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	98.39
PRK08116	268	hypothetical protein; Validated	98.39
PRK09862	506	putative ATP-dependent protease; Provisional	98.38
PRK06964	342	DNA polymerase III subunit delta'; Validated	98.37
PF09336	62	Vps4_C: Vps4 C terminal oligomerisation domain; In	98.36
PRK07952	244	DNA replication protein DnaC; Validated	98.35
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	98.34
PRK07993	334	DNA polymerase III subunit delta'; Validated	98.31
PRK06871	325	DNA polymerase III subunit delta'; Validated	98.3
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.29
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.29
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	98.26
KOG1514|consensus	767		98.26
PRK08181	269	transposase; Validated	98.25
PRK08769	319	DNA polymerase III subunit delta'; Validated	98.25
KOG2680|consensus	454		98.24
KOG2227|consensus	529		98.24
PRK06526	254	transposase; Provisional	98.21
PRK08939	306	primosomal protein DnaI; Reviewed	98.2
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.19
PF13173	128	AAA_14: AAA domain	98.18
PRK06835	329	DNA replication protein DnaC; Validated	98.16
PRK09183	259	transposase/IS protein; Provisional	98.14
PRK09087	226	hypothetical protein; Validated	98.13
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.11
PRK06090	319	DNA polymerase III subunit delta'; Validated	98.11
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	98.11
KOG0990|consensus	360		98.1
COG4650	531	RtcR Sigma54-dependent transcription regulator con	98.1
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.05
PRK08699	325	DNA polymerase III subunit delta'; Validated	98.05
COG0593	408	DnaA ATPase involved in DNA replication initiation	98.01
KOG2170|consensus	344		97.96
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	97.95
PF05729	166	NACHT: NACHT domain	97.92
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.9
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	97.87
PRK06921	266	hypothetical protein; Provisional	97.85
PF14516	331	AAA_35: AAA-like domain	97.84
PRK05917	290	DNA polymerase III subunit delta'; Validated	97.84
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.81
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.8
KOG1970|consensus	634		97.76
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.76
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	97.73
COG3284	606	AcoR Transcriptional activator of acetoin/glycerol	97.73
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.71
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	97.67
PRK15455	644	PrkA family serine protein kinase; Provisional	97.66
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.64
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.62
PHA00729	226	NTP-binding motif containing protein	97.61
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.6
PRK07276	290	DNA polymerase III subunit delta'; Validated	97.59
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	97.56
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.55
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.54
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.52
PRK07132	299	DNA polymerase III subunit delta'; Validated	97.5
PRK08118	167	topology modulation protein; Reviewed	97.5
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.5
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.48
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	97.47
PRK00131	175	aroK shikimate kinase; Reviewed	97.46
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	97.46
PRK11823	446	DNA repair protein RadA; Provisional	97.45
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.44
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.44
PRK13947	171	shikimate kinase; Provisional	97.43
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.36
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	97.36
PRK03839	180	putative kinase; Provisional	97.35
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	97.35
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.34
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.31
KOG2035|consensus	351		97.28
PRK14974	336	cell division protein FtsY; Provisional	97.28
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	97.26
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	97.24
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.22
PRK00625	173	shikimate kinase; Provisional	97.22
PRK06067	234	flagellar accessory protein FlaH; Validated	97.2
PRK07261	171	topology modulation protein; Provisional	97.2
PRK14532	188	adenylate kinase; Provisional	97.2
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.18
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	97.17
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.16
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	97.15
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.15
PRK13949	169	shikimate kinase; Provisional	97.11
PRK06217	183	hypothetical protein; Validated	97.09
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.09
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.09
PRK05818	261	DNA polymerase III subunit delta'; Validated	97.08
PRK10867	433	signal recognition particle protein; Provisional	97.07
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.07
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.07
PRK03731	171	aroL shikimate kinase II; Reviewed	97.05
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.04
COG1485	367	Predicted ATPase [General function prediction only	97.03
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.02
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	97.02
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.02
PRK14530	215	adenylate kinase; Provisional	97.0
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.99
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	96.98
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	96.97
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	96.97
PRK09376	416	rho transcription termination factor Rho; Provisio	96.96
PRK14531	183	adenylate kinase; Provisional	96.96
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	96.96
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	96.94
KOG2543|consensus	438		96.93
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	96.91
COG1241	682	MCM2 Predicted ATPase involved in replication cont	96.91
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.91
PRK06762	166	hypothetical protein; Provisional	96.9
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.9
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.89
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	96.89
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.89
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	96.88
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	96.88
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	96.88
KOG3347|consensus	176		96.88
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	96.87
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.86
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.85
PRK13946	184	shikimate kinase; Provisional	96.85
KOG2383|consensus	467		96.84
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	96.84
cd01128	249	rho_factor Transcription termination factor rho is	96.83
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.83
KOG0477|consensus	854		96.82
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.81
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	96.81
PRK04328	249	hypothetical protein; Provisional	96.81
PRK10536	262	hypothetical protein; Provisional	96.81
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.79
PRK02496	184	adk adenylate kinase; Provisional	96.77
PRK14528	186	adenylate kinase; Provisional	96.77
KOG1968|consensus	871		96.76
cd00983	325	recA RecA is a bacterial enzyme which has roles in	96.76
PRK05057	172	aroK shikimate kinase I; Reviewed	96.75
KOG0652|consensus	424		96.75
PRK14737	186	gmk guanylate kinase; Provisional	96.74
PTZ00088	229	adenylate kinase 1; Provisional	96.72
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.71
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	96.7
PRK13808	333	adenylate kinase; Provisional	96.7
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.7
PRK06696	223	uridine kinase; Validated	96.69
PRK04182	180	cytidylate kinase; Provisional	96.68
PRK13948	182	shikimate kinase; Provisional	96.68
PRK00279	215	adk adenylate kinase; Reviewed	96.68
PLN02200	234	adenylate kinase family protein	96.66
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	96.63
TIGR00959	428	ffh signal recognition particle protein. This mode	96.63
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	96.62
PRK06547	172	hypothetical protein; Provisional	96.61
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	96.61
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	96.61
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.6
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.6
PRK04296	190	thymidine kinase; Provisional	96.59
PRK10416	318	signal recognition particle-docking protein FtsY;	96.57
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	96.56
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.56
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.56
KOG0482|consensus	721		96.55
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	96.54
KOG1051|consensus	898		96.54
PRK04040	188	adenylate kinase; Provisional	96.54
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.54
PRK09302	509	circadian clock protein KaiC; Reviewed	96.53
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	96.51
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.51
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	96.5
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.48
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.47
PHA02530	300	pseT polynucleotide kinase; Provisional	96.45
PRK08233	182	hypothetical protein; Provisional	96.45
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.43
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.43
PRK14527	191	adenylate kinase; Provisional	96.42
KOG0480|consensus	764		96.41
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.41
PRK01184	184	hypothetical protein; Provisional	96.4
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	96.4
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.39
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.39
KOG0478|consensus	804		96.38
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.38
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.37
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	96.37
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	96.36
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	96.35
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.33
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	96.33
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.32
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	96.3
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.3
PRK05973	237	replicative DNA helicase; Provisional	96.3
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.29
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.29
PRK09354	349	recA recombinase A; Provisional	96.29
cd03246	173	ABCC_Protease_Secretion This family represents the	96.29
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.28
PRK04301	317	radA DNA repair and recombination protein RadA; Va	96.27
PHA02624	647	large T antigen; Provisional	96.24
TIGR02236	310	recomb_radA DNA repair and recombination protein R	96.24
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	96.22
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	96.22
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	96.2
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	96.2
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	96.18
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.17
PF05707	193	Zot: Zonular occludens toxin (Zot); InterPro: IPR0	96.17
PTZ00035	337	Rad51 protein; Provisional	96.15
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.15
PRK04220	301	2-phosphoglycerate kinase; Provisional	96.14
PRK14526	211	adenylate kinase; Provisional	96.14
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.13
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.11
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.1
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.09
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	96.09
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.07
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.07
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.04
TIGR00767	415	rho transcription termination factor Rho. Members	96.03
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	96.02
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	96.02
KOG0058|consensus	716		96.02
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	96.02
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.01
PLN02674	244	adenylate kinase	96.0
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	95.99
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.98
COG2884	223	FtsE Predicted ATPase involved in cell division [C	95.96
PF04851	184	ResIII: Type III restriction enzyme, res subunit;	95.96
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	95.96
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	95.95
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	95.94
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.94
COG4178	604	ABC-type uncharacterized transport system, permeas	95.94
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	95.93
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	95.93
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	95.92
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	95.91
PRK12339	197	2-phosphoglycerate kinase; Provisional	95.91
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	95.9
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	95.9
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	95.9
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	95.9
PF13245	76	AAA_19: Part of AAA domain	95.89
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.88
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	95.88
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.86
COG1127	263	Ttg2A ABC-type transport system involved in resist	95.85
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	95.85
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	95.84
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.83
PRK12608	380	transcription termination factor Rho; Provisional	95.83
PRK13975	196	thymidylate kinase; Provisional	95.82
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.82
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	95.81
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	95.81
PRK00889	175	adenylylsulfate kinase; Provisional	95.79
PRK05541	176	adenylylsulfate kinase; Provisional	95.78
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.77
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	95.77
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	95.76
PRK05480	209	uridine/cytidine kinase; Provisional	95.75
PRK13833	323	conjugal transfer protein TrbB; Provisional	95.75
PRK14529	223	adenylate kinase; Provisional	95.74
PLN02199	303	shikimate kinase	95.73
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	95.73
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.72
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.72
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	95.72
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	95.71
PRK04132	846	replication factor C small subunit; Provisional	95.7
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	95.69
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	95.69
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	95.69
cd03215	182	ABC_Carb_Monos_II This family represents domain II	95.68
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	95.68
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	95.67
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	95.67
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	95.66

>KOG0738|consensus

Probab=100.00  E-value=1e-59  Score=490.76  Aligned_cols=279  Identities=59%  Similarity=0.954  Sum_probs=265.4

Q ss_pred             HHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc-------ceeEEecCCCCChH
Q psy16204        189 IREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSHGTGKT  261 (577)
Q Consensus       189 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-------k~ILL~GPpGtGKT  261 (577)
                      -....|.+.|++..|.+.++.++++++|++.|+||.|+.+||+.|++++++|+..|++|       +|||++||||||||
T Consensus       180 ~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKT  259 (491)
T KOG0738|consen  180 GEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKT  259 (491)
T ss_pred             cccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHH
Confidence            35567888999999999999999999999999999999999999999999999999988       57899999999999


Q ss_pred             HHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHh
Q psy16204        262 MLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRV  341 (577)
Q Consensus       262 ~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (577)
                      +||||||.||+..||+|+++.+++||.|++|++||-||++                                        
T Consensus       260 lLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFem----------------------------------------  299 (491)
T KOG0738|consen  260 LLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEM----------------------------------------  299 (491)
T ss_pred             HHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHH----------------------------------------
Confidence            9999999999999999999999999999999999999998                                        


Q ss_pred             hcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEE
Q psy16204        342 LKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFI  421 (577)
Q Consensus       342 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfI  421 (577)
                                                                                           |+.++|++|||
T Consensus       300 ---------------------------------------------------------------------ARfyAPStIFi  310 (491)
T KOG0738|consen  300 ---------------------------------------------------------------------ARFYAPSTIFI  310 (491)
T ss_pred             ---------------------------------------------------------------------HHHhCCceeeh
Confidence                                                                                 99999999999


Q ss_pred             ccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCc-----------------
Q psy16204        422 DEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGV-----------------  484 (577)
Q Consensus       422 DEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~-----------------  484 (577)
                      ||||.||+.||+.++|++++||+++||.+|||++......+.|+|+||||.||+||.+++||+                 
T Consensus       311 DEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~L  390 (491)
T KOG0738|consen  311 DEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSAL  390 (491)
T ss_pred             hhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHH
Confidence            999999999999999999999999999999999987555577999999999999999999986                 


Q ss_pred             --------ccccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhC
Q psy16204        485 --------VIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR  556 (577)
Q Consensus       485 --------~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~  556 (577)
                              ..+.+++++.||+.++||||+||.++|++|+|+++||.+.+.++.+|..+..+....+|+.+||++|+.+++
T Consensus       391 i~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~  470 (491)
T KOG0738|consen  391 IKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVR  470 (491)
T ss_pred             HHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcC
Confidence                    233467899999999999999999999999999999999999999999999998889999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhCC
Q psy16204        557 KSVTAHDLSKYDSWMNEFGS  576 (577)
Q Consensus       557 psv~~~~~~~~~~~~~~~~~  576 (577)
                      |||++.++.+|++|+++|||
T Consensus       471 pSvs~~d~~k~ekW~~efGS  490 (491)
T KOG0738|consen  471 PSVSAADLEKYEKWMDEFGS  490 (491)
T ss_pred             cCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999998

>KOG0733|consensus

Probab=100.00  E-value=1.3e-49  Score=431.25  Aligned_cols=354  Identities=27%  Similarity=0.383  Sum_probs=305.5

Q ss_pred             CCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204        215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK  286 (577)
Q Consensus       215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k  286 (577)
                      .+++.+++|+|++.....|.+.+.. +.+|++|        +||||+||||||||+||++||.++++||+.|++.++.++
T Consensus       184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG  262 (802)
T KOG0733|consen  184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG  262 (802)
T ss_pred             CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence            3478999999999999999999877 8888765        789999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHH------------------------------------------------------------------
Q psy16204        287 YRGESEKLVRLLFE------------------------------------------------------------------  300 (577)
Q Consensus       287 ~~G~~e~~vr~lF~------------------------------------------------------------------  300 (577)
                      +.|++|+.+|+||+                                                                  
T Consensus       263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl  342 (802)
T KOG0733|consen  263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL  342 (802)
T ss_pred             cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence            99999999999998                                                                  


Q ss_pred             --------------------------------------------------------------------Hhhhhhcc----
Q psy16204        301 --------------------------------------------------------------------MVSFLVGL----  308 (577)
Q Consensus       301 --------------------------------------------------------------------~a~~~~~~----  308 (577)
                                                                                          ...-+...    
T Consensus       343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p  422 (802)
T KOG0733|consen  343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP  422 (802)
T ss_pred             CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence                                                                                00000000    


Q ss_pred             -c-----------------------cCcc-------e-----------------------------------------ee
Q psy16204        309 -H-----------------------SNKT-------F-----------------------------------------YL  316 (577)
Q Consensus       309 -~-----------------------~~~~-------~-----------------------------------------~~  316 (577)
                       +                       ++-.       +                                         =|
T Consensus       423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF  502 (802)
T KOG0733|consen  423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF  502 (802)
T ss_pred             cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence             0                       0000       0                                         46


Q ss_pred             ccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccC-
Q psy16204        317 VGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQS-  395 (577)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  395 (577)
                      +.|+++.|.++++.+....+++.+++++...+..+.++|...|+|+++++||||||+..+-+-++++.++|...++++. 
T Consensus       503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELl  582 (802)
T KOG0733|consen  503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELL  582 (802)
T ss_pred             eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHH
Confidence            6778899999999999999999999999999999999999999999999999999999999999999999999999995 


Q ss_pred             --CCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCc
Q psy16204        396 --HEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP  473 (577)
Q Consensus       396 --~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p  473 (577)
                        |+|++++.++.+|.+|+..+||||||||||.|++.|+.++ .....|++|+||..|||+...    ..|+||||||+|
T Consensus       583 NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R----~gV~viaATNRP  657 (802)
T KOG0733|consen  583 NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEER----RGVYVIAATNRP  657 (802)
T ss_pred             HHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccc----cceEEEeecCCC
Confidence              4999999999999999999999999999999999997655 677889999999999999853    789999999999


Q ss_pred             hhhHHHhhcCccccc-----------------------------ccCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH
Q psy16204        474 YQLLTLCLEGVVIDV-----------------------------NLDFHKISKMLE--GYTGSDIANLARDAAMMSIRRK  522 (577)
Q Consensus       474 ~~L~~allrr~~i~~-----------------------------~vdl~~LA~~t~--G~sgsDI~~l~~~Aa~~airr~  522 (577)
                      +-|+++++|+++++.                             +|||++||..+.  ||||+||..||++|++.|+|+.
T Consensus       658 DiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~  737 (802)
T KOG0733|consen  658 DIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRES  737 (802)
T ss_pred             cccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHH
Confidence            999999999876543                             569999999876  9999999999999999999997


Q ss_pred             HhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC
Q psy16204        523 IMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG  575 (577)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~~~~~~~~~~  575 (577)
                      +..+.... ..+........+|..||++|+++++|||++.|..+|+...+.+|
T Consensus       738 ~~~~~~~~-~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~  789 (802)
T KOG0733|consen  738 LFEIDSSE-DDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS  789 (802)
T ss_pred             HhhccccC-cccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence            64221100 00000001335899999999999999999999999999988876

>KOG0730|consensus

Probab=100.00  E-value=2.8e-47  Score=416.66  Aligned_cols=337  Identities=27%  Similarity=0.382  Sum_probs=305.2

Q ss_pred             CCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccc
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKY  287 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~  287 (577)
                      +.+. .+++|.......+++.+.+|++.+..+        +++|+|||||||||.+++++|++.++.++.+++.+++.++
T Consensus       180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~  258 (693)
T KOG0730|consen  180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF  258 (693)
T ss_pred             cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence            5566 899999999999999999999998765        6799999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhhh-----------cccc----------------------Cc---c------------------
Q psy16204        288 RGESEKLVRLLFEMVSFLV-----------GLHS----------------------NK---T------------------  313 (577)
Q Consensus       288 ~G~~e~~vr~lF~~a~~~~-----------~~~~----------------------~~---~------------------  313 (577)
                      .|++++++|..|+.|....           ..++                      .+   .                  
T Consensus       259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alR  338 (693)
T KOG0730|consen  259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALR  338 (693)
T ss_pred             ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhh
Confidence            9999999999998443322           1111                      00   0                  


Q ss_pred             ---e----------------------------------------------------------------------------
Q psy16204        314 ---F----------------------------------------------------------------------------  314 (577)
Q Consensus       314 ---~----------------------------------------------------------------------------  314 (577)
                         |                                                                            
T Consensus       339 RgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~~~A~~~i~p  418 (693)
T KOG0730|consen  339 RGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRRTLEIFQEALMGIRP  418 (693)
T ss_pred             cCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCc
Confidence               0                                                                            


Q ss_pred             -----eeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCC
Q psy16204        315 -----YLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGK  389 (577)
Q Consensus       315 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (577)
                           ++++.+|..|++++|++..+.++++.+.|+..+++.+.++|.+||.|++.|+||||||+..+.+...+++++|..
T Consensus       419 sa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls  498 (693)
T KOG0730|consen  419 SALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS  498 (693)
T ss_pred             hhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee
Confidence                 678888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCC---CCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEE
Q psy16204        390 KGTCQSH---EGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMI  466 (577)
Q Consensus       390 ~~~~~~~---~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlI  466 (577)
                      .++++.|   +|++++.+++.|++|+..+||||||||||.++..|++ +.+...+||+++||.+|||+...    ++|+|
T Consensus       499 vkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g-~~~~v~~RVlsqLLtEmDG~e~~----k~V~V  573 (693)
T KOG0730|consen  499 VKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGG-SSSGVTDRVLSQLLTEMDGLEAL----KNVLV  573 (693)
T ss_pred             ccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCC-CccchHHHHHHHHHHHccccccc----CcEEE
Confidence            9999966   9999999999999999999999999999999999974 34488899999999999999864    89999


Q ss_pred             EEecCCchhhHHHhhcCcccc---------------------------cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy16204        467 LAATNHPYQLLTLCLEGVVID---------------------------VNLDFHKISKMLEGYTGSDIANLARDAAMMSI  519 (577)
Q Consensus       467 IatTN~p~~L~~allrr~~i~---------------------------~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~ai  519 (577)
                      |||||+|+.||++|+|+++++                           .++|+++||+.|+||||+||..+|++|++.++
T Consensus       574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~  653 (693)
T KOG0730|consen  574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLAL  653 (693)
T ss_pred             EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence            999999999999999966544                           35699999999999999999999999999999


Q ss_pred             HHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q psy16204        520 RRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNE  573 (577)
Q Consensus       520 rr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~~~~~~~~  573 (577)
                      ++.+.               -..|+.+||++|++..+++++..++++|++|.+.
T Consensus       654 ~e~i~---------------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~  692 (693)
T KOG0730|consen  654 RESIE---------------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR  692 (693)
T ss_pred             HHhcc---------------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence            99873               2469999999999999999999999999999764

>KOG0736|consensus

Probab=100.00  E-value=5e-45  Score=402.84  Aligned_cols=252  Identities=37%  Similarity=0.561  Sum_probs=226.1

Q ss_pred             hcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc-------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      .+.|+|.|+||+|++++|..|.+.|.+|+.+++++       .|||||||||||||.+|||+|.||...|+.|.+.+|++
T Consensus       664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN  743 (953)
T KOG0736|consen  664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN  743 (953)
T ss_pred             CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence            45789999999999999999999999999999987       48999999999999999999999999999999999999


Q ss_pred             ccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccc
Q psy16204        286 KYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSV  365 (577)
Q Consensus       286 k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  365 (577)
                      .|+|++|++||++|+.                                                                
T Consensus       744 MYVGqSE~NVR~VFer----------------------------------------------------------------  759 (953)
T KOG0736|consen  744 MYVGQSEENVREVFER----------------------------------------------------------------  759 (953)
T ss_pred             HHhcchHHHHHHHHHH----------------------------------------------------------------
Confidence            9999999999999997                                                                


Q ss_pred             cccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCCh-hHHHHHHH
Q psy16204        366 MVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSE-HEASRRFK  444 (577)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~-~~~~~~v~  444 (577)
                                                                   |+...||||||||+|+++++||..++ .....|++
T Consensus       760 ---------------------------------------------AR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVV  794 (953)
T KOG0736|consen  760 ---------------------------------------------ARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVV  794 (953)
T ss_pred             ---------------------------------------------hhccCCeEEEeccccccCccCCCCCCccccHHHHH
Confidence                                                         89999999999999999999987554 45788999


Q ss_pred             HHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcc----------------------------cccccCHHHHH
Q psy16204        445 AELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVV----------------------------IDVNLDFHKIS  496 (577)
Q Consensus       445 ~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~----------------------------i~~~vdl~~LA  496 (577)
                      ++||.+||++...  ..+.|+||+|||+||.||++++|+++                            ++++||+.+||
T Consensus       795 SQLLAELDgls~~--~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiA  872 (953)
T KOG0736|consen  795 SQLLAELDGLSDS--SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIA  872 (953)
T ss_pred             HHHHHHhhcccCC--CCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHH
Confidence            9999999998854  45789999999999998777777654                            45577999999


Q ss_pred             HHcC-CCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC
Q psy16204        497 KMLE-GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG  575 (577)
Q Consensus       497 ~~t~-G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~~~~~~~~~~  575 (577)
                      +.|. .|||+|+-+||.+|++.|++|.+.+.....+.+..++.....|+++||.+|+++++||++..+|.+|+-.+..|.
T Consensus       873 k~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs  952 (953)
T KOG0736|consen  873 KKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS  952 (953)
T ss_pred             hhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence            9995 799999999999999999999886555444444455556678999999999999999999999999999998883

>KOG0739|consensus

Probab=100.00  E-value=8.8e-45  Score=369.77  Aligned_cols=258  Identities=44%  Similarity=0.716  Sum_probs=227.2

Q ss_pred             HHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc-------ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        206 TLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       206 ~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      .+...++.+.|+|.|+||.|++.||+.|++++.+|+..|.+|       ++|||||||||||++|||++|.+.+..||.|
T Consensus       118 ~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv  197 (439)
T KOG0739|consen  118 ALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV  197 (439)
T ss_pred             HhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence            344567788999999999999999999999999999999887       6899999999999999999999999999999


Q ss_pred             ecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCC
Q psy16204        279 SSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQES  358 (577)
Q Consensus       279 ~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  358 (577)
                      +.++|+++|.|++|++|+.+|++                                                         
T Consensus       198 SSSDLvSKWmGESEkLVknLFem---------------------------------------------------------  220 (439)
T KOG0739|consen  198 SSSDLVSKWMGESEKLVKNLFEM---------------------------------------------------------  220 (439)
T ss_pred             ehHHHHHHHhccHHHHHHHHHHH---------------------------------------------------------
Confidence            99999999999999999999998                                                         


Q ss_pred             CCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhH
Q psy16204        359 GPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHE  438 (577)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~  438 (577)
                                                                          |+.+.|+||||||||.+|..| ++++++
T Consensus       221 ----------------------------------------------------ARe~kPSIIFiDEiDslcg~r-~enEse  247 (439)
T KOG0739|consen  221 ----------------------------------------------------ARENKPSIIFIDEIDSLCGSR-SENESE  247 (439)
T ss_pred             ----------------------------------------------------HHhcCCcEEEeehhhhhccCC-CCCchH
Confidence                                                                999999999999999999877 456789


Q ss_pred             HHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccccc--------------------------cCH
Q psy16204        439 ASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVN--------------------------LDF  492 (577)
Q Consensus       439 ~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~--------------------------vdl  492 (577)
                      +.+|+..+||.+|.|+..   ++..|+|++|||-||.|+.++.|||.-...                          -|+
T Consensus       248 asRRIKTEfLVQMqGVG~---d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~  324 (439)
T KOG0739|consen  248 ASRRIKTEFLVQMQGVGN---DNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDF  324 (439)
T ss_pred             HHHHHHHHHHHhhhcccc---CCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhH
Confidence            999999999999999986   457899999999999999999999843221                          189


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcC---------ChhH---------------Hhh--h---hccCCCCCC
Q psy16204        493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQ---------TPAQ---------------IKE--I---KQEDIDLPV  543 (577)
Q Consensus       493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~---------~~~~---------------~~~--~---~~~~~~~~I  543 (577)
                      .+|+.+|+||||+||.-++++|.|..+|+.....         .+..               ++.  .   .....+++|
T Consensus       325 ~eL~~kTeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~v  404 (439)
T KOG0739|consen  325 KELARKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPV  404 (439)
T ss_pred             HHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCc
Confidence            9999999999999999999999999999965321         0111               110  0   112246789


Q ss_pred             CHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q psy16204        544 TEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS  576 (577)
Q Consensus       544 t~~df~~Al~~~~psv~~~~~~~~~~~~~~~~~  576 (577)
                      |+.||.++|.+.+|+|.++||.++++|.+.||.
T Consensus       405 t~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGq  437 (439)
T KOG0739|consen  405 TMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQ  437 (439)
T ss_pred             cHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999995

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.3e-43  Score=364.05  Aligned_cols=218  Identities=37%  Similarity=0.558  Sum_probs=201.3

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      +...+.|.+++++|+|+++.++.|++++.+|+.+|++|        +|||||||||||||+||||+|++.++.|++|.+|
T Consensus       140 M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS  219 (406)
T COG1222         140 MEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS  219 (406)
T ss_pred             eeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccH
Confidence            55667899999999999999999999999999999876        8999999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204        282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS  361 (577)
Q Consensus       282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  361 (577)
                      +|..||.|+...+||++|++                                                            
T Consensus       220 ElVqKYiGEGaRlVRelF~l------------------------------------------------------------  239 (406)
T COG1222         220 ELVQKYIGEGARLVRELFEL------------------------------------------------------------  239 (406)
T ss_pred             HHHHHHhccchHHHHHHHHH------------------------------------------------------------
Confidence            99999999999999999998                                                            


Q ss_pred             cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHH
Q psy16204        362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEA  439 (577)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~  439 (577)
                                                                       |+.++||||||||||+|+.+|...  +.+..
T Consensus       240 -------------------------------------------------ArekaPsIIFiDEIDAIg~kR~d~~t~gDrE  270 (406)
T COG1222         240 -------------------------------------------------AREKAPSIIFIDEIDAIGAKRFDSGTSGDRE  270 (406)
T ss_pred             -------------------------------------------------HhhcCCeEEEEechhhhhcccccCCCCchHH
Confidence                                                             999999999999999999999543  44667


Q ss_pred             HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCH
Q psy16204        440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDF  492 (577)
Q Consensus       440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl  492 (577)
                      ..|.+-+||.+|||+...    ++|=||||||+++.||++++|+++++.                           +|||
T Consensus       271 VQRTmleLL~qlDGFD~~----~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~  346 (406)
T COG1222         271 VQRTMLELLNQLDGFDPR----GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL  346 (406)
T ss_pred             HHHHHHHHHHhccCCCCC----CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH
Confidence            788899999999999964    889999999999999999999987765                           4589


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCC
Q psy16204        493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRK  557 (577)
Q Consensus       493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~p  557 (577)
                      +.||+.|+|+||+||+++|.+|.|.|+|+..                 ..||++||.+|.+++..
T Consensus       347 e~la~~~~g~sGAdlkaictEAGm~AiR~~R-----------------~~Vt~~DF~~Av~KV~~  394 (406)
T COG1222         347 ELLARLTEGFSGADLKAICTEAGMFAIRERR-----------------DEVTMEDFLKAVEKVVK  394 (406)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHhHHHHHhcc-----------------CeecHHHHHHHHHHHHh
Confidence            9999999999999999999999999999975                 47999999999998754

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=100.00  E-value=7.4e-40  Score=369.25  Aligned_cols=358  Identities=28%  Similarity=0.392  Sum_probs=275.0

Q ss_pred             CCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204        215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK  286 (577)
Q Consensus       215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k  286 (577)
                      .+.+.|++|+|++.+++.|.+++.+|+.+++.+        +++|||||||||||++|++||++++.+|+.+++.++.++
T Consensus       172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~  251 (733)
T TIGR01243       172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK  251 (733)
T ss_pred             CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence            367899999999999999999999998887653        689999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHhhhh------------------------------------hccccCcceeeccccCC--------
Q psy16204        287 YRGESEKLVRLLFEMVSFL------------------------------------VGLHSNKTFYLVGVLNG--------  322 (577)
Q Consensus       287 ~~G~~e~~vr~lF~~a~~~------------------------------------~~~~~~~~~~~~~~~~~--------  322 (577)
                      |.|+.+..++.+|+.|...                                    .+...+..++++.-.|.        
T Consensus       252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al  331 (733)
T TIGR01243       252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPAL  331 (733)
T ss_pred             cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHH
Confidence            9999999999999764211                                    11122223333321110        


Q ss_pred             --------------------------------------------------------------------------------
Q psy16204        323 --------------------------------------------------------------------------------  322 (577)
Q Consensus       323 --------------------------------------------------------------------------------  322 (577)
                                                                                                      
T Consensus       332 ~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~  411 (733)
T TIGR01243       332 RRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAE  411 (733)
T ss_pred             hCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence                                                                                            


Q ss_pred             ---------------------------------------CCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccc
Q psy16204        323 ---------------------------------------EPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIF  363 (577)
Q Consensus       323 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  363 (577)
                                                             .|.++.|....+.++.+.+.++-..+......+..+|.+++
T Consensus       412 ~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giL  491 (733)
T TIGR01243       412 EIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVL  491 (733)
T ss_pred             cccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEE
Confidence                                                   00111111111111122222222222223344677889999


Q ss_pred             cccccCCCCCCcchhhhhhhhcccCCCCccc---CCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHH
Q psy16204        364 SVMVDGLGKGPWSMVAVVATHFTWGKKGTCQ---SHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEAS  440 (577)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~  440 (577)
                      .|+++|+||+..+.+......+++....+.+   .++|+.++.++.+|..|+...||||||||||.|++.|+.+......
T Consensus       492 L~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~  571 (733)
T TIGR01243       492 LFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVT  571 (733)
T ss_pred             EECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHH
Confidence            9999999999997777777777777666554   4699999999999999999999999999999999998766556677


Q ss_pred             HHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCHH
Q psy16204        441 RRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDFH  493 (577)
Q Consensus       441 ~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl~  493 (577)
                      ++++++||..||++..    ..+|+||||||+|+.|+++++|+.+++                           .++|++
T Consensus       572 ~~~~~~lL~~ldg~~~----~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~  647 (733)
T TIGR01243       572 DRIVNQLLTEMDGIQE----LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLE  647 (733)
T ss_pred             HHHHHHHHHHhhcccC----CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHH
Confidence            8999999999999874    367999999999999999999844332                           346899


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhh-ccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy16204        494 KISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIK-QEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMN  572 (577)
Q Consensus       494 ~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~-~~~~~~~It~~df~~Al~~~~psv~~~~~~~~~~~~~  572 (577)
                      .||+.|+||||+||.++|++|++.++++.........+.... ....+..|+.+||.+|+++++||++++++..|++|.+
T Consensus       648 ~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~  727 (733)
T TIGR01243       648 ELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAK  727 (733)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999876432211111110 0112457999999999999999999999999999999


Q ss_pred             hhCC
Q psy16204        573 EFGS  576 (577)
Q Consensus       573 ~~~~  576 (577)
                      +||.
T Consensus       728 ~~~~  731 (733)
T TIGR01243       728 ELKR  731 (733)
T ss_pred             Hhcc
Confidence            9985

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0737|consensus

Probab=100.00  E-value=8.7e-38  Score=325.35  Aligned_cols=249  Identities=39%  Similarity=0.632  Sum_probs=215.5

Q ss_pred             CCCCcccccCcHHHHHHHHHHHHCcCCCcccc---------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF---------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK  286 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~---------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k  286 (577)
                      -.++|.||+|++.+++.|++.+.+|+++|++|         +|||||||||||||++|+++|++.|++|+.|+.+.+++|
T Consensus        87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K  166 (386)
T KOG0737|consen   87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK  166 (386)
T ss_pred             ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence            45899999999999999999999999999987         689999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccccc
Q psy16204        287 YRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVM  366 (577)
Q Consensus       287 ~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  366 (577)
                      |+|+.+++++.+|..                                                                 
T Consensus       167 WfgE~eKlv~AvFsl-----------------------------------------------------------------  181 (386)
T KOG0737|consen  167 WFGEAQKLVKAVFSL-----------------------------------------------------------------  181 (386)
T ss_pred             hHHHHHHHHHHHHhh-----------------------------------------------------------------
Confidence            999999999999965                                                                 


Q ss_pred             ccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHH
Q psy16204        367 VDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAE  446 (577)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~  446 (577)
                                                                  |.+-.||||||||||.+...| ...+|+..+.+.++
T Consensus       182 --------------------------------------------AsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~e  216 (386)
T KOG0737|consen  182 --------------------------------------------ASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNE  216 (386)
T ss_pred             --------------------------------------------hhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHH
Confidence                                                        778899999999999999999 67889999999999


Q ss_pred             HHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcc-------------------------cccccCHHHHHHHcCC
Q psy16204        447 LLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVV-------------------------IDVNLDFHKISKMLEG  501 (577)
Q Consensus       447 LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~-------------------------i~~~vdl~~LA~~t~G  501 (577)
                      |....||+.++  +...|+|+||||+|.+||.+++||++                         ++.++|+.++|.+|+|
T Consensus       217 FM~~WDGl~s~--~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~G  294 (386)
T KOG0737|consen  217 FMALWDGLSSK--DSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEG  294 (386)
T ss_pred             HHHHhccccCC--CCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCC
Confidence            99999999986  55679999999999999999999863                         3457799999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcC-ChhHHhh----hh------ccCCCCCCCHHHHHHHHHHhCCCCCHHH--HHHHH
Q psy16204        502 YTGSDIANLARDAAMMSIRRKIMGQ-TPAQIKE----IK------QEDIDLPVTEKDFREAIARCRKSVTAHD--LSKYD  568 (577)
Q Consensus       502 ~sgsDI~~l~~~Aa~~airr~~~~~-~~~~~~~----~~------~~~~~~~It~~df~~Al~~~~psv~~~~--~~~~~  568 (577)
                      |||+||.++|+.|++.++|+.+... ...+.+.    ..      ....-++++++||.+|+.++-++++...  ....+
T Consensus       295 ySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~  374 (386)
T KOG0737|consen  295 YSGSDLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALK  374 (386)
T ss_pred             CcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHH
Confidence            9999999999999999999987542 0001110    00      0112478999999999998888765543  45678


Q ss_pred             HHHHhhCC
Q psy16204        569 SWMNEFGS  576 (577)
Q Consensus       569 ~~~~~~~~  576 (577)
                      .|.+.||.
T Consensus       375 ~~~~~~~e  382 (386)
T KOG0737|consen  375 QWNELYGE  382 (386)
T ss_pred             HHHhhhcc
Confidence            89998874

>KOG0740|consensus

Probab=100.00  E-value=3.8e-37  Score=327.67  Aligned_cols=264  Identities=47%  Similarity=0.725  Sum_probs=233.6

Q ss_pred             cCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc-------ceeEEecCCCCChHHHHHHHHH
Q psy16204        197 TGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-------k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .+++...++...+++..+.+++.|++|.|++.+++.+.+++.+|..++..|       +++||.||||+|||+|+++||.
T Consensus       129 ~~~~~~~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAs  208 (428)
T KOG0740|consen  129 KEVDETLIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIAT  208 (428)
T ss_pred             ccccchhhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHh
Confidence            445666677777889999999999999999999999999999999988876       6799999999999999999999


Q ss_pred             HhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCC
Q psy16204        270 ECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTA  349 (577)
Q Consensus       270 el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  349 (577)
                      |+++.|+.++++.|+++|+|+.|++||.||..                                                
T Consensus       209 E~~atff~iSassLtsK~~Ge~eK~vralf~v------------------------------------------------  240 (428)
T KOG0740|consen  209 ESGATFFNISASSLTSKYVGESEKLVRALFKV------------------------------------------------  240 (428)
T ss_pred             hhcceEeeccHHHhhhhccChHHHHHHHHHHH------------------------------------------------
Confidence            99999999999999999999999999999986                                                


Q ss_pred             cccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEcccccccc
Q psy16204        350 PTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCS  429 (577)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~  429 (577)
                                                                                   |++.+|+||||||||++..
T Consensus       241 -------------------------------------------------------------Ar~~qPsvifidEidslls  259 (428)
T KOG0740|consen  241 -------------------------------------------------------------ARSLQPSVIFIDEIDSLLS  259 (428)
T ss_pred             -------------------------------------------------------------HHhcCCeEEEechhHHHHh
Confidence                                                                         8999999999999999999


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc----------------------
Q psy16204        430 MRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID----------------------  487 (577)
Q Consensus       430 ~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~----------------------  487 (577)
                      +| .+.+++..+++..++|.++++....  ..++|+||+|||+||.++.+++|+|.-.                      
T Consensus       260 ~R-s~~e~e~srr~ktefLiq~~~~~s~--~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~  336 (428)
T KOG0740|consen  260 KR-SDNEHESSRRLKTEFLLQFDGKNSA--PDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ  336 (428)
T ss_pred             hc-CCcccccchhhhhHHHhhhccccCC--CCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC
Confidence            99 7888999999999999999998865  5568999999999999999999976221                      


Q ss_pred             ----cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHH
Q psy16204        488 ----VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHD  563 (577)
Q Consensus       488 ----~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~  563 (577)
                          .+.|++.||+.|+||+|+||.++|.+|++..+|.....   ..+..+.. +.-++|+..||..|+..++|+++...
T Consensus       337 ~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~---~~~~~~~~-~~~r~i~~~df~~a~~~i~~~~s~~~  412 (428)
T KOG0740|consen  337 PNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGT---TDLEFIDA-DKIRPITYPDFKNAFKNIKPSVSLEG  412 (428)
T ss_pred             CCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccc---hhhhhcch-hccCCCCcchHHHHHHhhccccCccc
Confidence                12378999999999999999999999999998886421   01121221 22378999999999999999999999


Q ss_pred             HHHHHHHHHhhCC
Q psy16204        564 LSKYDSWMNEFGS  576 (577)
Q Consensus       564 ~~~~~~~~~~~~~  576 (577)
                      +.+|+.|..+||+
T Consensus       413 l~~~~~~~~~fg~  425 (428)
T KOG0740|consen  413 LEKYEKWDKEFGS  425 (428)
T ss_pred             cchhHHHhhhhcc
Confidence            9999999999997

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.6e-35  Score=315.64  Aligned_cols=224  Identities=43%  Similarity=0.649  Sum_probs=200.9

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      .....+.+.|.+|+|++.+++.+++++.+|+.+++.+        +++|||||||||||+||+++|.+++.+|+.+.+++
T Consensus       232 ~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~  311 (494)
T COG0464         232 VLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE  311 (494)
T ss_pred             cccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH
Confidence            3345778999999999999999999999999998843        58999999999999999999999999999999999


Q ss_pred             cccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcc
Q psy16204        283 LTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSI  362 (577)
Q Consensus       283 l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  362 (577)
                      ++++|+|++|++++.+|..                                                             
T Consensus       312 l~sk~vGesek~ir~~F~~-------------------------------------------------------------  330 (494)
T COG0464         312 LLSKWVGESEKNIRELFEK-------------------------------------------------------------  330 (494)
T ss_pred             HhccccchHHHHHHHHHHH-------------------------------------------------------------
Confidence            9999999999999999987                                                             


Q ss_pred             ccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHH
Q psy16204        363 FSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRR  442 (577)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~  442 (577)
                                                                      |++..||||||||||++++.|+.+. +...++
T Consensus       331 ------------------------------------------------A~~~~p~iiFiDEiDs~~~~r~~~~-~~~~~r  361 (494)
T COG0464         331 ------------------------------------------------ARKLAPSIIFIDEIDSLASGRGPSE-DGSGRR  361 (494)
T ss_pred             ------------------------------------------------HHcCCCcEEEEEchhhhhccCCCCC-chHHHH
Confidence                                                            8889999999999999999986543 334479


Q ss_pred             HHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc-----------------------------cccCHH
Q psy16204        443 FKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID-----------------------------VNLDFH  493 (577)
Q Consensus       443 v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~-----------------------------~~vdl~  493 (577)
                      ++++||.+|++....    .+|+||+|||+|+.|+++++|.++++                             .+++++
T Consensus       362 ~~~~lL~~~d~~e~~----~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~  437 (494)
T COG0464         362 VVGQLLTELDGIEKA----EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLE  437 (494)
T ss_pred             HHHHHHHHhcCCCcc----CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHH
Confidence            999999999998854    67999999999999999999933222                             256889


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy16204        494 KISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSW  570 (577)
Q Consensus       494 ~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~~~~~  570 (577)
                      .+++.++||+|+||..+|++|++.++++..                ...||.+||.+|++..+|+++      |++|
T Consensus       438 ~l~~~t~~~sgadi~~i~~ea~~~~~~~~~----------------~~~~~~~~~~~a~~~~~p~~~------~~~~  492 (494)
T COG0464         438 ELAEITEGYSGADIAALVREAALEALREAR----------------RREVTLDDFLDALKKIKPSVT------YEEW  492 (494)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHhc----------------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence            999999999999999999999999999864                357999999999999999998      8888

>KOG0734|consensus

Probab=100.00  E-value=8.4e-35  Score=312.81  Aligned_cols=210  Identities=34%  Similarity=0.471  Sum_probs=187.1

Q ss_pred             CCCCCcccccCcHHHHHHHHHHHHC---cC----CCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccc
Q psy16204        215 NPNVQWNKVAGLTEAKAILQEAMVL---PT----IMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKY  287 (577)
Q Consensus       215 ~~~v~~~dIiG~~~ak~~L~e~l~~---pl----~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~  287 (577)
                      ..++.|+||-|.++||++|++.+.+   |.    ...++|+||||.||||||||+||||+|.|.++|||+.+++++-+-|
T Consensus       298 ~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~  377 (752)
T KOG0734|consen  298 MKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF  377 (752)
T ss_pred             hcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence            3468999999999999999998754   22    2245679999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccc
Q psy16204        288 RGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMV  367 (577)
Q Consensus       288 ~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  367 (577)
                      +|...+.||++|.+                                                                  
T Consensus       378 VGvGArRVRdLF~a------------------------------------------------------------------  391 (752)
T KOG0734|consen  378 VGVGARRVRDLFAA------------------------------------------------------------------  391 (752)
T ss_pred             hcccHHHHHHHHHH------------------------------------------------------------------
Confidence            99999999999987                                                                  


Q ss_pred             cCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHH
Q psy16204        368 DGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAEL  447 (577)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~L  447 (577)
                                                                 |++.+||||||||||.++.+|.....+ ..+..+|+|
T Consensus       392 -------------------------------------------Ak~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQL  427 (752)
T KOG0734|consen  392 -------------------------------------------AKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQL  427 (752)
T ss_pred             -------------------------------------------HHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHH
Confidence                                                       899999999999999999999765555 888999999


Q ss_pred             HHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCHHHHHHHcC
Q psy16204        448 LIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDFHKISKMLE  500 (577)
Q Consensus       448 L~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl~~LA~~t~  500 (577)
                      |..|||+..+    ..|+||+|||.|+.||++|.|+++|+.                           +||+.-||.-|.
T Consensus       428 LvEmDGF~qN----eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~  503 (752)
T KOG0734|consen  428 LVEMDGFKQN----EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTP  503 (752)
T ss_pred             HHHhcCcCcC----CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCC
Confidence            9999999965    689999999999999999999887764                           458899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHh
Q psy16204        501 GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC  555 (577)
Q Consensus       501 G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~  555 (577)
                      ||+|+||++|++.||+.|.....                 ..||++||+.|-.++
T Consensus       504 GFsGAdLaNlVNqAAlkAa~dga-----------------~~VtM~~LE~akDrI  541 (752)
T KOG0734|consen  504 GFSGADLANLVNQAALKAAVDGA-----------------EMVTMKHLEFAKDRI  541 (752)
T ss_pred             CCchHHHHHHHHHHHHHHHhcCc-----------------ccccHHHHhhhhhhe
Confidence            99999999999999998865542                 469999999998876

>KOG0728|consensus

Probab=100.00  E-value=5.5e-34  Score=286.08  Aligned_cols=231  Identities=35%  Similarity=0.527  Sum_probs=207.2

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      +..++.|..+++-|+|++..+..+++.+.+|..+|++|        +|+|||||||+|||.||+++|....|.|++|+++
T Consensus       136 MmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgs  215 (404)
T KOG0728|consen  136 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS  215 (404)
T ss_pred             HhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechH
Confidence            55677888899999999999999999999999999987        7899999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204        282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS  361 (577)
Q Consensus       282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  361 (577)
                      ++..+|.|+...+||++|.|                                                            
T Consensus       216 elvqk~igegsrmvrelfvm------------------------------------------------------------  235 (404)
T KOG0728|consen  216 ELVQKYIGEGSRMVRELFVM------------------------------------------------------------  235 (404)
T ss_pred             HHHHHHhhhhHHHHHHHHHH------------------------------------------------------------
Confidence            99999999999999999998                                                            


Q ss_pred             cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC--CChhHH
Q psy16204        362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEA  439 (577)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~--~~~~~~  439 (577)
                                                                       |+.++|+|||+||||+|++.|..  .+.+..
T Consensus       236 -------------------------------------------------arehapsiifmdeidsigs~r~e~~~ggdse  266 (404)
T KOG0728|consen  236 -------------------------------------------------AREHAPSIIFMDEIDSIGSSRVESGSGGDSE  266 (404)
T ss_pred             -------------------------------------------------HHhcCCceEeeecccccccccccCCCCccHH
Confidence                                                             99999999999999999999843  344667


Q ss_pred             HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccccc---------------------------CH
Q psy16204        440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL---------------------------DF  492 (577)
Q Consensus       440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~v---------------------------dl  492 (577)
                      ..+.+-+||.++||+...    +++-||+|||+.+-|+++++|+.+++..+                           ++
T Consensus       267 vqrtmlellnqldgfeat----knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l  342 (404)
T KOG0728|consen  267 VQRTMLELLNQLDGFEAT----KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL  342 (404)
T ss_pred             HHHHHHHHHHhccccccc----cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCH
Confidence            788889999999999964    88999999999999999999998877543                           78


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy16204        493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSW  570 (577)
Q Consensus       493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~~~~~  570 (577)
                      ..+|+...|.||+++..+|.+|.|.|+|+..                 ..+|.+||+-|+.++-..-+..+++--+-|
T Consensus       343 ~kiaekm~gasgaevk~vcteagm~alrerr-----------------vhvtqedfemav~kvm~k~~e~nms~~kl~  403 (404)
T KOG0728|consen  343 RKIAEKMPGASGAEVKGVCTEAGMYALRERR-----------------VHVTQEDFEMAVAKVMQKDSEKNMSIKKLW  403 (404)
T ss_pred             HHHHHhCCCCccchhhhhhhhhhHHHHHHhh-----------------ccccHHHHHHHHHHHHhccccccchHHHhh
Confidence            9999999999999999999999999999875                 579999999999997665565555544444

>KOG0735|consensus

Probab=100.00  E-value=9.2e-34  Score=311.82  Aligned_cols=236  Identities=30%  Similarity=0.489  Sum_probs=203.5

Q ss_pred             CCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccc
Q psy16204        217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYR  288 (577)
Q Consensus       217 ~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~  288 (577)
                      ...|.||+|+.++|+.|.+.+.||-+.|.+|        .|||||||||||||.||-++|..++..|+.|.+.++++||.
T Consensus       663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI  742 (952)
T KOG0735|consen  663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI  742 (952)
T ss_pred             CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence            3799999999999999999999999998877        58999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccccccc
Q psy16204        289 GESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVD  368 (577)
Q Consensus       289 G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  368 (577)
                      |.+|.+||++|+.                                                                   
T Consensus       743 GaSEq~vR~lF~r-------------------------------------------------------------------  755 (952)
T KOG0735|consen  743 GASEQNVRDLFER-------------------------------------------------------------------  755 (952)
T ss_pred             cccHHHHHHHHHH-------------------------------------------------------------------
Confidence            9999999999987                                                                   


Q ss_pred             CCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHH
Q psy16204        369 GLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELL  448 (577)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL  448 (577)
                                                                |+...|||+||||+|+++++||-++ .....||+|+||
T Consensus       756 ------------------------------------------A~~a~PCiLFFDEfdSiAPkRGhDs-TGVTDRVVNQlL  792 (952)
T KOG0735|consen  756 ------------------------------------------AQSAKPCILFFDEFDSIAPKRGHDS-TGVTDRVVNQLL  792 (952)
T ss_pred             ------------------------------------------hhccCCeEEEeccccccCcccCCCC-CCchHHHHHHHH
Confidence                                                      8888999999999999999997665 355679999999


Q ss_pred             HHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCHHHHHHHcCC
Q psy16204        449 IQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDFHKISKMLEG  501 (577)
Q Consensus       449 ~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl~~LA~~t~G  501 (577)
                      .+|||..+-    +.|.|+|||.+|+.|+++++|+++++.                           ++||+.+|.+|+|
T Consensus       793 TelDG~Egl----~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g  868 (952)
T KOG0735|consen  793 TELDGAEGL----DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDG  868 (952)
T ss_pred             Hhhcccccc----ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCC
Confidence            999998864    789999999999999999999887764                           4589999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHH--HhCCCCCHHHHHHHHHHHHhh
Q psy16204        502 YTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIA--RCRKSVTAHDLSKYDSWMNEF  574 (577)
Q Consensus       502 ~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~--~~~psv~~~~~~~~~~~~~~~  574 (577)
                      |||+||..|+-+|-+.++++...        +..++.....++...+.....  +-+|+.++-+-.++.+-.-+|
T Consensus       869 ~tgADlq~ll~~A~l~avh~~l~--------~~~~~~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~  935 (952)
T KOG0735|consen  869 FTGADLQSLLYNAQLAAVHEILK--------REDEEGVVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQF  935 (952)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHH--------hcCccccCCccchhhhhhhhhccCCCccccccchhhhhhHHHhh
Confidence            99999999999999999999763        222333445566666655554  567888777666665554443

>KOG0731|consensus

Probab=100.00  E-value=1.5e-33  Score=315.52  Aligned_cols=211  Identities=38%  Similarity=0.561  Sum_probs=188.6

Q ss_pred             CCCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204        215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK  286 (577)
Q Consensus       215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k  286 (577)
                      ...+.|+||.|.+++|+.|.|++.. +.+|        ++|+|+||+||||||||+||||+|.|.|+||+.++++++.+.
T Consensus       305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~  383 (774)
T KOG0731|consen  305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM  383 (774)
T ss_pred             CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence            3448999999999999999998855 4444        356899999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccccc
Q psy16204        287 YRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVM  366 (577)
Q Consensus       287 ~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  366 (577)
                      ++|.....+|++|..                                                                 
T Consensus       384 ~~g~~asrvr~lf~~-----------------------------------------------------------------  398 (774)
T KOG0731|consen  384 FVGVGASRVRDLFPL-----------------------------------------------------------------  398 (774)
T ss_pred             hcccchHHHHHHHHH-----------------------------------------------------------------
Confidence            999999999999986                                                                 


Q ss_pred             ccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCC---CCChhHHHHHH
Q psy16204        367 VDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRG---SDSEHEASRRF  443 (577)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~---~~~~~~~~~~v  443 (577)
                                                                  |+.++||||||||||.++..|+   ..+.+...+..
T Consensus       399 --------------------------------------------ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~t  434 (774)
T KOG0731|consen  399 --------------------------------------------ARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQT  434 (774)
T ss_pred             --------------------------------------------hhccCCeEEEecccccccccccccccCCCChHHHHH
Confidence                                                        8999999999999999999994   34556778899


Q ss_pred             HHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccccc----------------------------CHHHH
Q psy16204        444 KAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL----------------------------DFHKI  495 (577)
Q Consensus       444 ~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~v----------------------------dl~~L  495 (577)
                      +|+||..|||+...    +.|+|+|+||+|+.||++++|+++++..+                            |+..|
T Consensus       435 lnQll~emDgf~~~----~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~  510 (774)
T KOG0731|consen  435 LNQLLVEMDGFETS----KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKL  510 (774)
T ss_pred             HHHHHHHhcCCcCC----CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHH
Confidence            99999999999864    78999999999999999999998887533                            56779


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhC
Q psy16204        496 SKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR  556 (577)
Q Consensus       496 A~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~  556 (577)
                      |.+|.||+|+||+++|.+|+..+.|+..                 ..|+..||+.|+++..
T Consensus       511 a~~t~gf~gadl~n~~neaa~~a~r~~~-----------------~~i~~~~~~~a~~Rvi  554 (774)
T KOG0731|consen  511 ASLTPGFSGADLANLCNEAALLAARKGL-----------------REIGTKDLEYAIERVI  554 (774)
T ss_pred             HhcCCCCcHHHHHhhhhHHHHHHHHhcc-----------------CccchhhHHHHHHHHh
Confidence            9999999999999999999999999875                 4699999999999653

>CHL00195 ycf46 Ycf46; Provisional

Probab=100.00  E-value=9.5e-33  Score=300.08  Aligned_cols=225  Identities=21%  Similarity=0.284  Sum_probs=192.7

Q ss_pred             CCCCcccccCcHHHHHHHHHHHHCcC-----CCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccc
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAMVLPT-----IMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGE  290 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l~~pl-----~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~  290 (577)
                      +.+.|++|+|++.+|+.|.+......     ..-..++|+|||||||||||++||+||++++.+|+.++++.+.++|+|+
T Consensus       223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGe  302 (489)
T CHL00195        223 VNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGE  302 (489)
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccCh
Confidence            46789999999999999987542210     1123458999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCC
Q psy16204        291 SEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGL  370 (577)
Q Consensus       291 ~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (577)
                      ++.+++.+|..                                                                     
T Consensus       303 se~~l~~~f~~---------------------------------------------------------------------  313 (489)
T CHL00195        303 SESRMRQMIRI---------------------------------------------------------------------  313 (489)
T ss_pred             HHHHHHHHHHH---------------------------------------------------------------------
Confidence            99999999976                                                                     


Q ss_pred             CCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHH
Q psy16204        371 GKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQ  450 (577)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~  450 (577)
                                                              ++...||||||||||+++..+...++.....++++.||..
T Consensus       314 ----------------------------------------A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~  353 (489)
T CHL00195        314 ----------------------------------------AEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITW  353 (489)
T ss_pred             ----------------------------------------HHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHH
Confidence                                                    7778999999999999988765555567788999999999


Q ss_pred             HhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc-----------------------------ccCHHHHHHHcCC
Q psy16204        451 MDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV-----------------------------NLDFHKISKMLEG  501 (577)
Q Consensus       451 mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~-----------------------------~vdl~~LA~~t~G  501 (577)
                      |+...      .+|+||||||+++.|+++++|+.+++.                             ++|++.||+.|+|
T Consensus       354 l~~~~------~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~G  427 (489)
T CHL00195        354 LSEKK------SPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNK  427 (489)
T ss_pred             HhcCC------CceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCC
Confidence            98543      569999999999999999998554432                             3478999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCC--CCHHHHHHHHHHHHh
Q psy16204        502 YTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS--VTAHDLSKYDSWMNE  573 (577)
Q Consensus       502 ~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ps--v~~~~~~~~~~~~~~  573 (577)
                      |||+||+++|.+|+..++.+.                  ..+|.+||..|++.++|+  +..+++..|.+|...
T Consensus       428 fSGAdI~~lv~eA~~~A~~~~------------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~  483 (489)
T CHL00195        428 FSGAEIEQSIIEAMYIAFYEK------------------REFTTDDILLALKQFIPLAQTEKEQIEALQNWASS  483 (489)
T ss_pred             CCHHHHHHHHHHHHHHHHHcC------------------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence            999999999999998887552                  469999999999999998  577899999999875

>KOG0727|consensus

Probab=100.00  E-value=1.8e-33  Score=282.61  Aligned_cols=221  Identities=32%  Similarity=0.490  Sum_probs=196.3

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      ......|.+++.||+|++-.|+.+++++.+|+.+.+++        +|||+|||||||||+|||++|+...+.|++|.++
T Consensus       144 l~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgs  223 (408)
T KOG0727|consen  144 LGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS  223 (408)
T ss_pred             cCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccH
Confidence            34456788999999999999999999999999887654        7899999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204        282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS  361 (577)
Q Consensus       282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  361 (577)
                      ++..+|.|+...+||++|..                                                            
T Consensus       224 efvqkylgegprmvrdvfrl------------------------------------------------------------  243 (408)
T KOG0727|consen  224 EFVQKYLGEGPRMVRDVFRL------------------------------------------------------------  243 (408)
T ss_pred             HHHHHHhccCcHHHHHHHHH------------------------------------------------------------
Confidence            99999999999999999986                                                            


Q ss_pred             cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC--CChhHH
Q psy16204        362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEA  439 (577)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~--~~~~~~  439 (577)
                                                                       |+.++|+||||||||.|+.+|-.  .+.+..
T Consensus       244 -------------------------------------------------akenapsiifideidaiatkrfdaqtgadre  274 (408)
T KOG0727|consen  244 -------------------------------------------------AKENAPSIIFIDEIDAIATKRFDAQTGADRE  274 (408)
T ss_pred             -------------------------------------------------HhccCCcEEEeehhhhHhhhhccccccccHH
Confidence                                                             89999999999999999999843  344667


Q ss_pred             HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCH
Q psy16204        440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDF  492 (577)
Q Consensus       440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl  492 (577)
                      ..+++-+||.+|||+...    .||-||+|||+.+.|+++++|+++++.                           ++|+
T Consensus       275 vqril~ellnqmdgfdq~----~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdl  350 (408)
T KOG0727|consen  275 VQRILIELLNQMDGFDQT----TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDL  350 (408)
T ss_pred             HHHHHHHHHHhccCcCcc----cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCH
Confidence            788999999999999864    789999999999999999999876654                           3478


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHh-CCCCC
Q psy16204        493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC-RKSVT  560 (577)
Q Consensus       493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~-~psv~  560 (577)
                      +.+..+-+-.||+||..+|++|.|.++|+..                 -.|..+||++|.+.. ++..+
T Consensus       351 e~~v~rpdkis~adi~aicqeagm~avr~nr-----------------yvvl~kd~e~ay~~~vk~~~~  402 (408)
T KOG0727|consen  351 EDLVARPDKISGADINAICQEAGMLAVRENR-----------------YVVLQKDFEKAYKTVVKKDET  402 (408)
T ss_pred             HHHhcCccccchhhHHHHHHHHhHHHHHhcc-----------------eeeeHHHHHHHHHhhcCCccc
Confidence            8888888999999999999999999999975                 468899999999874 44433

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=100.00  E-value=1.1e-32  Score=292.81  Aligned_cols=219  Identities=34%  Similarity=0.486  Sum_probs=190.0

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc--------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF--------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~--------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      ..+.+.|.++|+||+|++.+++.|++++.+|+.+++.        ++++|||||||||||++|+++|++++.+|+.+.++
T Consensus       134 ~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s  213 (398)
T PTZ00454        134 LQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGS  213 (398)
T ss_pred             hcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehH
Confidence            3445688999999999999999999999999988765        37899999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204        282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS  361 (577)
Q Consensus       282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  361 (577)
                      ++..+|.|+.+..++++|..                                                            
T Consensus       214 ~l~~k~~ge~~~~lr~lf~~------------------------------------------------------------  233 (398)
T PTZ00454        214 EFVQKYLGEGPRMVRDVFRL------------------------------------------------------------  233 (398)
T ss_pred             HHHHHhcchhHHHHHHHHHH------------------------------------------------------------
Confidence            99999999999999988876                                                            


Q ss_pred             cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHH
Q psy16204        362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEA  439 (577)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~  439 (577)
                                                                       ++...||||||||||.++..|.+.  +.+..
T Consensus       234 -------------------------------------------------A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~  264 (398)
T PTZ00454        234 -------------------------------------------------ARENAPSIIFIDEVDSIATKRFDAQTGADRE  264 (398)
T ss_pred             -------------------------------------------------HHhcCCeEEEEECHhhhccccccccCCccHH
Confidence                                                             778899999999999999877432  22345


Q ss_pred             HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCH
Q psy16204        440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDF  492 (577)
Q Consensus       440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl  492 (577)
                      ..+++..||..||++...    .+|+||+|||+|+.|+++++|+.+++                           .++|+
T Consensus       265 ~~r~l~~LL~~ld~~~~~----~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~  340 (398)
T PTZ00454        265 VQRILLELLNQMDGFDQT----TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL  340 (398)
T ss_pred             HHHHHHHHHHHhhccCCC----CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH
Confidence            668889999999987643    56999999999999999998854432                           24588


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCC
Q psy16204        493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS  558 (577)
Q Consensus       493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ps  558 (577)
                      ..+|..++||+|+||.++|++|++.|+|+..                 ..|+.+||.+|+.++...
T Consensus       341 ~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~-----------------~~i~~~df~~A~~~v~~~  389 (398)
T PTZ00454        341 EDFVSRPEKISAADIAAICQEAGMQAVRKNR-----------------YVILPKDFEKGYKTVVRK  389 (398)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC-----------------CccCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999998853                 479999999999997554

>KOG0729|consensus

Probab=100.00  E-value=2.4e-32  Score=276.05  Aligned_cols=219  Identities=35%  Similarity=0.508  Sum_probs=195.6

Q ss_pred             hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204        209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSS  280 (577)
Q Consensus       209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~  280 (577)
                      -+.+++.|.++++||+|..+.++.|++.+.+|+.+|+.|        +|||+|||||||||.+||++|+..++.|++|-+
T Consensus       165 mm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvig  244 (435)
T KOG0729|consen  165 MMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIG  244 (435)
T ss_pred             EEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehh
Confidence            355678899999999999999999999999999999865        899999999999999999999999999999999


Q ss_pred             CccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCC
Q psy16204        281 STLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGP  360 (577)
Q Consensus       281 s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  360 (577)
                      +++..+|+|+...+||++|+|                                                           
T Consensus       245 selvqkyvgegarmvrelf~m-----------------------------------------------------------  265 (435)
T KOG0729|consen  245 SELVQKYVGEGARMVRELFEM-----------------------------------------------------------  265 (435)
T ss_pred             HHHHHHHhhhhHHHHHHHHHH-----------------------------------------------------------
Confidence            999999999999999999998                                                           


Q ss_pred             ccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhH
Q psy16204        361 SIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHE  438 (577)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~  438 (577)
                                                                        |+...-|||||||||.++..|-.+  +.+.
T Consensus       266 --------------------------------------------------artkkaciiffdeidaiggarfddg~ggdn  295 (435)
T KOG0729|consen  266 --------------------------------------------------ARTKKACIIFFDEIDAIGGARFDDGAGGDN  295 (435)
T ss_pred             --------------------------------------------------hcccceEEEEeeccccccCccccCCCCCcH
Confidence                                                              666677999999999999998443  4456


Q ss_pred             HHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccccc---------------------------cC
Q psy16204        439 ASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVN---------------------------LD  491 (577)
Q Consensus       439 ~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~---------------------------vd  491 (577)
                      ...+.+-+|+.++||+...    .|+-|++|||+|+.|+++++|+.+++..                           +-
T Consensus       296 evqrtmleli~qldgfdpr----gnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir  371 (435)
T KOG0729|consen  296 EVQRTMLELINQLDGFDPR----GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIR  371 (435)
T ss_pred             HHHHHHHHHHHhccCCCCC----CCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchh
Confidence            6778888899999998854    8899999999999999999998876653                           35


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCC
Q psy16204        492 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRK  557 (577)
Q Consensus       492 l~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~p  557 (577)
                      |+-||..|.+-+|++|.++|.+|.|.|+|...                 ...|++||.+|+.++-+
T Consensus       372 ~ellarlcpnstgaeirsvcteagmfairarr-----------------k~atekdfl~av~kvvk  420 (435)
T KOG0729|consen  372 FELLARLCPNSTGAEIRSVCTEAGMFAIRARR-----------------KVATEKDFLDAVNKVVK  420 (435)
T ss_pred             HHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh-----------------hhhhHHHHHHHHHHHHH
Confidence            68999999999999999999999999998765                 36899999999998643

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=100.00  E-value=1.9e-32  Score=276.02  Aligned_cols=216  Identities=27%  Similarity=0.352  Sum_probs=182.2

Q ss_pred             hcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc-----cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccc
Q psy16204        213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF-----FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKY  287 (577)
Q Consensus       213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~-----~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~  287 (577)
                      ...++++++||+||++||+..+-.+.+ +..|+.     +++||||||||||||++||+||+++..||+.+.+.+++.+|
T Consensus       113 e~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh  191 (368)
T COG1223         113 EIISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH  191 (368)
T ss_pred             hhhccccHhhhhchHHHHHHHHHHHHH-hhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence            345678999999999999977655533 344444     38999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccc
Q psy16204        288 RGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMV  367 (577)
Q Consensus       288 ~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  367 (577)
                      +|+....++++|+.                                                                  
T Consensus       192 VGdgar~Ihely~r------------------------------------------------------------------  205 (368)
T COG1223         192 VGDGARRIHELYER------------------------------------------------------------------  205 (368)
T ss_pred             hhhHHHHHHHHHHH------------------------------------------------------------------
Confidence            99999999999987                                                                  


Q ss_pred             cCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHH
Q psy16204        368 DGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAEL  447 (577)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~L  447 (577)
                                                                 |++.+|||+||||+|.|+-.|.-+.-......++|+|
T Consensus       206 -------------------------------------------A~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNAL  242 (368)
T COG1223         206 -------------------------------------------ARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNAL  242 (368)
T ss_pred             -------------------------------------------HHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHH
Confidence                                                       8899999999999999999875444444455789999


Q ss_pred             HHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCc-------------------------ccccccCHHHHHHHcCCC
Q psy16204        448 LIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGV-------------------------VIDVNLDFHKISKMLEGY  502 (577)
Q Consensus       448 L~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~-------------------------~i~~~vdl~~LA~~t~G~  502 (577)
                      |..|||+..+    ..|+.|||||+|+.|++++..||                         ++..+.+++.+++.+.|+
T Consensus       243 LTelDgi~en----eGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~  318 (368)
T COG1223         243 LTELDGIKEN----EGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGM  318 (368)
T ss_pred             HHhccCcccC----CceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCC
Confidence            9999999964    77999999999999888887765                         444456899999999999


Q ss_pred             CHHHH-HHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCC
Q psy16204        503 TGSDI-ANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSV  559 (577)
Q Consensus       503 sgsDI-~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv  559 (577)
                      ||.|| +.++..|...|+++..                 ..|+.+||+.|+++-++.-
T Consensus       319 SgRdikekvlK~aLh~Ai~ed~-----------------e~v~~edie~al~k~r~~r  359 (368)
T COG1223         319 SGRDIKEKVLKTALHRAIAEDR-----------------EKVEREDIEKALKKERKRR  359 (368)
T ss_pred             CchhHHHHHHHHHHHHHHHhch-----------------hhhhHHHHHHHHHhhcccc
Confidence            99999 5667777778877753                 3699999999999877653

>KOG0726|consensus

Probab=99.98  E-value=1.7e-32  Score=279.61  Aligned_cols=214  Identities=33%  Similarity=0.511  Sum_probs=191.1

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      .+.+.|..++.||+|++..++.+++.+.+|+.+|+.+        +||+|||+||||||.||||+|+...+.|+++-+++
T Consensus       175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGse  254 (440)
T KOG0726|consen  175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSE  254 (440)
T ss_pred             ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHH
Confidence            4456778899999999999999999999999999865        89999999999999999999999999999999999


Q ss_pred             cccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcc
Q psy16204        283 LTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSI  362 (577)
Q Consensus       283 l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  362 (577)
                      ++.+|.|+..++||++|..                                                             
T Consensus       255 LiQkylGdGpklvRqlF~v-------------------------------------------------------------  273 (440)
T KOG0726|consen  255 LIQKYLGDGPKLVRELFRV-------------------------------------------------------------  273 (440)
T ss_pred             HHHHHhccchHHHHHHHHH-------------------------------------------------------------
Confidence            9999999999999999987                                                             


Q ss_pred             ccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCC---CCChhHH
Q psy16204        363 FSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRG---SDSEHEA  439 (577)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~---~~~~~~~  439 (577)
                                                                      |..++|+|+||||||.++.+|-   +++ ...
T Consensus       274 ------------------------------------------------A~e~apSIvFiDEIdAiGtKRyds~Sgg-erE  304 (440)
T KOG0726|consen  274 ------------------------------------------------AEEHAPSIVFIDEIDAIGTKRYDSNSGG-ERE  304 (440)
T ss_pred             ------------------------------------------------HHhcCCceEEeehhhhhccccccCCCcc-HHH
Confidence                                                            8889999999999999999983   233 334


Q ss_pred             HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccccc---------------------------CH
Q psy16204        440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL---------------------------DF  492 (577)
Q Consensus       440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~v---------------------------dl  492 (577)
                      +.+.+-+||.++||+.+.    ..|-||+|||+.+.|++++.|+.+++..+                           ++
T Consensus       305 iQrtmLELLNQldGFdsr----gDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnl  380 (440)
T KOG0726|consen  305 IQRTMLELLNQLDGFDSR----GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNL  380 (440)
T ss_pred             HHHHHHHHHHhccCcccc----CCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccH
Confidence            556666899999999864    67999999999999999999998776533                           56


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHh
Q psy16204        493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC  555 (577)
Q Consensus       493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~  555 (577)
                      +.+...-+.+||+||+++|.+|.+.|+|+..+                 .+|++||.+|.+.+
T Consensus       381 e~li~~kddlSGAdIkAictEaGllAlRerRm-----------------~vt~~DF~ka~e~V  426 (440)
T KOG0726|consen  381 EELIMTKDDLSGADIKAICTEAGLLALRERRM-----------------KVTMEDFKKAKEKV  426 (440)
T ss_pred             HHHhhcccccccccHHHHHHHHhHHHHHHHHh-----------------hccHHHHHHHHHHH
Confidence            77777778999999999999999999999874                 79999999999875

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=4.1e-32  Score=298.97  Aligned_cols=213  Identities=37%  Similarity=0.552  Sum_probs=191.3

Q ss_pred             hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      ......+.+.|+.|.+++|+.|.+.+.. ++.|        +.++|+||+||||||||+|||++|.+.++||+.++++++
T Consensus       141 ~~~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~F  219 (596)
T COG0465         141 LEDQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF  219 (596)
T ss_pred             cccccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhh
Confidence            3346678999999999999999998754 3322        456899999999999999999999999999999999999


Q ss_pred             ccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccc
Q psy16204        284 TSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIF  363 (577)
Q Consensus       284 ~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  363 (577)
                      .+-|+|-..+.+|++|++                                                              
T Consensus       220 VemfVGvGAsRVRdLF~q--------------------------------------------------------------  237 (596)
T COG0465         220 VEMFVGVGASRVRDLFEQ--------------------------------------------------------------  237 (596)
T ss_pred             hhhhcCCCcHHHHHHHHH--------------------------------------------------------------
Confidence            999999999999999987                                                              


Q ss_pred             cccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC--CChhHHHH
Q psy16204        364 SVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEASR  441 (577)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~--~~~~~~~~  441 (577)
                                                                     |++++||||||||||.+...|+.  ++.+..++
T Consensus       238 -----------------------------------------------Akk~aP~IIFIDEiDAvGr~Rg~g~GggnderE  270 (596)
T COG0465         238 -----------------------------------------------AKKNAPCIIFIDEIDAVGRQRGAGLGGGNDERE  270 (596)
T ss_pred             -----------------------------------------------hhccCCCeEEEehhhhcccccCCCCCCCchHHH
Confidence                                                           99999999999999999999963  45577788


Q ss_pred             HHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCHHH
Q psy16204        442 RFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDFHK  494 (577)
Q Consensus       442 ~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl~~  494 (577)
                      ..+|+||.+|||+..+    ..|+|||+||+|+.+|++|+|+.+++.                           ++|+..
T Consensus       271 QTLNQlLvEmDGF~~~----~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~  346 (596)
T COG0465         271 QTLNQLLVEMDGFGGN----EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK  346 (596)
T ss_pred             HHHHHHHhhhccCCCC----CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH
Confidence            8999999999999954    779999999999999999999887765                           348899


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHh
Q psy16204        495 ISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC  555 (577)
Q Consensus       495 LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~  555 (577)
                      +|+.|.||+|+|+++++++|++.+.|+..                 ..|++.||.+|+.++
T Consensus       347 iAr~tpGfsGAdL~nl~NEAal~aar~n~-----------------~~i~~~~i~ea~drv  390 (596)
T COG0465         347 IARGTPGFSGADLANLLNEAALLAARRNK-----------------KEITMRDIEEAIDRV  390 (596)
T ss_pred             HhhhCCCcccchHhhhHHHHHHHHHHhcC-----------------eeEeccchHHHHHHH
Confidence            99999999999999999999999999974                 479999999999986

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.98  E-value=1.1e-31  Score=283.80  Aligned_cols=223  Identities=36%  Similarity=0.503  Sum_probs=190.7

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc--------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF--------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~--------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      ..+...|.+.|++|+|++++++.|.+++.+|+.+++.        +++||||||||||||++|+++|++++.+|+.++++
T Consensus       120 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~  199 (389)
T PRK03992        120 MEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS  199 (389)
T ss_pred             eeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehH
Confidence            3456678899999999999999999999999988754        46899999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204        282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS  361 (577)
Q Consensus       282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  361 (577)
                      ++..+|.|+++..++.+|+.                                                            
T Consensus       200 ~l~~~~~g~~~~~i~~~f~~------------------------------------------------------------  219 (389)
T PRK03992        200 ELVQKFIGEGARLVRELFEL------------------------------------------------------------  219 (389)
T ss_pred             HHhHhhccchHHHHHHHHHH------------------------------------------------------------
Confidence            99999999999999999976                                                            


Q ss_pred             cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCCh--hHH
Q psy16204        362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSE--HEA  439 (577)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~--~~~  439 (577)
                                                                       ++.+.||||||||||.++..+++++.  +..
T Consensus       220 -------------------------------------------------a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~  250 (389)
T PRK03992        220 -------------------------------------------------AREKAPSIIFIDEIDAIAAKRTDSGTSGDRE  250 (389)
T ss_pred             -------------------------------------------------HHhcCCeEEEEechhhhhcccccCCCCccHH
Confidence                                                             77788999999999999988754332  234


Q ss_pred             HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc---------------------------ccccCH
Q psy16204        440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI---------------------------DVNLDF  492 (577)
Q Consensus       440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i---------------------------~~~vdl  492 (577)
                      ..+.+..||..++++...    .+|+||||||+++.|+++++|+.++                           ..++++
T Consensus       251 ~~~~l~~lL~~ld~~~~~----~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~  326 (389)
T PRK03992        251 VQRTLMQLLAEMDGFDPR----GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL  326 (389)
T ss_pred             HHHHHHHHHHhccccCCC----CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH
Confidence            566777888888887642    5799999999999999999874332                           224689


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHH
Q psy16204        493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAH  562 (577)
Q Consensus       493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~  562 (577)
                      ..||..|+||+|+||.++|++|++.++++..                 ..|+.+||.+|+.+++++...+
T Consensus       327 ~~la~~t~g~sgadl~~l~~eA~~~a~~~~~-----------------~~i~~~d~~~A~~~~~~~~~~~  379 (389)
T PRK03992        327 EELAELTEGASGADLKAICTEAGMFAIRDDR-----------------TEVTMEDFLKAIEKVMGKEEKD  379 (389)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC-----------------CCcCHHHHHHHHHHHhcccccc
Confidence            9999999999999999999999999998742                 4699999999999999875443

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.97  E-value=1.3e-30  Score=280.03  Aligned_cols=217  Identities=33%  Similarity=0.474  Sum_probs=186.9

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc--------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF--------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~--------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      +.+...|.++|+||+|++.+++.|.+++.+|+.+++.        ++++|||||||||||++|+++|.+++.+|+.+.++
T Consensus       172 ~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~s  251 (438)
T PTZ00361        172 MKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGS  251 (438)
T ss_pred             cccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecc
Confidence            4456788899999999999999999999999988764        36899999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204        282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS  361 (577)
Q Consensus       282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  361 (577)
                      ++..+|.|+.+..++.+|..                                                            
T Consensus       252 eL~~k~~Ge~~~~vr~lF~~------------------------------------------------------------  271 (438)
T PTZ00361        252 ELIQKYLGDGPKLVRELFRV------------------------------------------------------------  271 (438)
T ss_pred             hhhhhhcchHHHHHHHHHHH------------------------------------------------------------
Confidence            99999999999999999876                                                            


Q ss_pred             cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHH
Q psy16204        362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEA  439 (577)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~  439 (577)
                                                                       |+.+.||||||||||.++..|...  +.+..
T Consensus       272 -------------------------------------------------A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e  302 (438)
T PTZ00361        272 -------------------------------------------------AEENAPSIVFIDEIDAIGTKRYDATSGGEKE  302 (438)
T ss_pred             -------------------------------------------------HHhCCCcEEeHHHHHHHhccCCCCCCcccHH
Confidence                                                             677789999999999999877432  22334


Q ss_pred             HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc---------------------------ccccCH
Q psy16204        440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI---------------------------DVNLDF  492 (577)
Q Consensus       440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i---------------------------~~~vdl  492 (577)
                      ..+.+..||..+|++...    .+|.||+|||+++.|+++++|+.++                           ..++++
T Consensus       303 ~qr~ll~LL~~Ldg~~~~----~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl  378 (438)
T PTZ00361        303 IQRTMLELLNQLDGFDSR----GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL  378 (438)
T ss_pred             HHHHHHHHHHHHhhhccc----CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH
Confidence            556778899999987642    5699999999999999999875433                           235688


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhC
Q psy16204        493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR  556 (577)
Q Consensus       493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~  556 (577)
                      ..++..++||+|+||.++|++|++.|+|+..                 ..|+.+||++|+.++.
T Consensus       379 ~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r-----------------~~Vt~~D~~~A~~~v~  425 (438)
T PTZ00361        379 EEFIMAKDELSGADIKAICTEAGLLALRERR-----------------MKVTQADFRKAKEKVL  425 (438)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC-----------------CccCHHHHHHHHHHHH
Confidence            9999999999999999999999999999863                 3699999999999973

>KOG0652|consensus

Probab=99.97  E-value=5.2e-31  Score=265.85  Aligned_cols=220  Identities=31%  Similarity=0.485  Sum_probs=188.7

Q ss_pred             HHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        207 LEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       207 ~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      ...+.+...|..+++||+|++..++.|.+++++|..+++.|        +|+|+|||||||||++||+.|...+..|+.+
T Consensus       157 VkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL  236 (424)
T KOG0652|consen  157 VKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKL  236 (424)
T ss_pred             cceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHh
Confidence            33455677888999999999999999999999999998764        7899999999999999999999999999999


Q ss_pred             ecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCC
Q psy16204        279 SSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQES  358 (577)
Q Consensus       279 ~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  358 (577)
                      -+..+..-|.|...++||+.|..                                                         
T Consensus       237 AgPQLVQMfIGdGAkLVRDAFaL---------------------------------------------------------  259 (424)
T KOG0652|consen  237 AGPQLVQMFIGDGAKLVRDAFAL---------------------------------------------------------  259 (424)
T ss_pred             cchHHHhhhhcchHHHHHHHHHH---------------------------------------------------------
Confidence            88887777777777777766654                                                         


Q ss_pred             CCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--Ch
Q psy16204        359 GPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SE  436 (577)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~  436 (577)
                                                                          |+..+|+||||||+|.|+.+|...  ..
T Consensus       260 ----------------------------------------------------AKEkaP~IIFIDElDAIGtKRfDSek~G  287 (424)
T KOG0652|consen  260 ----------------------------------------------------AKEKAPTIIFIDELDAIGTKRFDSEKAG  287 (424)
T ss_pred             ----------------------------------------------------hhccCCeEEEEechhhhccccccccccc
Confidence                                                                888999999999999999988432  12


Q ss_pred             hHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------c
Q psy16204        437 HEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------N  489 (577)
Q Consensus       437 ~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~  489 (577)
                      +....|.+-+||.++||+.++    ..|-||||||+.+.|+++++|.++++.                           +
T Consensus       288 DREVQRTMLELLNQLDGFss~----~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~D  363 (424)
T KOG0652|consen  288 DREVQRTMLELLNQLDGFSSD----DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDD  363 (424)
T ss_pred             cHHHHHHHHHHHHhhcCCCCc----cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCC
Confidence            345567777899999999965    779999999999999999998765543                           5


Q ss_pred             cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhC
Q psy16204        490 LDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR  556 (577)
Q Consensus       490 vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~  556 (577)
                      ++|++||.-|++|.|++.+++|-+|.|.++||..                 ..|+.+||.++|..++
T Consensus       364 vNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a-----------------tev~heDfmegI~eVq  413 (424)
T KOG0652|consen  364 VNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA-----------------TEVTHEDFMEGILEVQ  413 (424)
T ss_pred             CCHHHHhhcccccCchhheeeehhhhHHHHhccc-----------------ccccHHHHHHHHHHHH
Confidence            5899999999999999999999999999999963                 4699999999998764

>KOG0741|consensus

Probab=99.97  E-value=2.1e-30  Score=278.88  Aligned_cols=241  Identities=23%  Similarity=0.367  Sum_probs=191.0

Q ss_pred             cccCcHHHHHHHH-HHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCC-eEEEEecCccccccccch
Q psy16204        222 KVAGLTEAKAILQ-EAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGT-TFFNVSSSTLTSKYRGES  291 (577)
Q Consensus       222 dIiG~~~ak~~L~-e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~-~fv~v~~s~l~~k~~G~~  291 (577)
                      .|+|++.....+- ++.....-.|++.        +|+|||||||||||.+||.|.+-+++ .--.|++.++++||+|++
T Consensus       222 GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeS  301 (744)
T KOG0741|consen  222 GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGES  301 (744)
T ss_pred             ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhccc
Confidence            6899998887654 4444444344432        79999999999999999999999984 667899999999999999


Q ss_pred             HHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCC
Q psy16204        292 EKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLG  371 (577)
Q Consensus       292 e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (577)
                      |++||.+|..|+...+.+                                                              
T Consensus       302 E~NvR~LFaDAEeE~r~~--------------------------------------------------------------  319 (744)
T KOG0741|consen  302 EENVRKLFADAEEEQRRL--------------------------------------------------------------  319 (744)
T ss_pred             HHHHHHHHHhHHHHHHhh--------------------------------------------------------------
Confidence            999999998765332211                                                              


Q ss_pred             CCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCCh-hHHHHHHHHHHHHH
Q psy16204        372 KGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSE-HEASRRFKAELLIQ  450 (577)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~-~~~~~~v~~~LL~~  450 (577)
                                         |                    .+..--||+|||||.||.+||+... ......|+|+||..
T Consensus       320 -------------------g--------------------~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsK  360 (744)
T KOG0741|consen  320 -------------------G--------------------ANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSK  360 (744)
T ss_pred             -------------------C--------------------ccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHh
Confidence                               1                    1112249999999999999986433 55677899999999


Q ss_pred             HhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc-------------------------------ccCHHHHHHHc
Q psy16204        451 MDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV-------------------------------NLDFHKISKML  499 (577)
Q Consensus       451 mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~-------------------------------~vdl~~LA~~t  499 (577)
                      |||...-    .||+||+.||+.+.||.+|+|+++++.                               +||+++||.+|
T Consensus       361 mDGVeqL----NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lT  436 (744)
T KOG0741|consen  361 MDGVEQL----NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALT  436 (744)
T ss_pred             cccHHhh----hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHh
Confidence            9998853    789999999999999999999875532                               56999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCC--CCHHHHHHHHH
Q psy16204        500 EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS--VTAHDLSKYDS  569 (577)
Q Consensus       500 ~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ps--v~~~~~~~~~~  569 (577)
                      .+|||++|+.|++.|...|+.|++............  .....|+++||..||.+++|.  ++.++++.|..
T Consensus       437 KNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~--~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~  506 (744)
T KOG0741|consen  437 KNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVA--IENLKVTRGDFLNALEDVKPAFGISEEDLERFVM  506 (744)
T ss_pred             cCCchhHHHHHHHHHHHHHHHhhhccCcceecCchh--hhheeecHHHHHHHHHhcCcccCCCHHHHHHHHh
Confidence            999999999999999999999988644222111111  123579999999999999999  68888887754

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.97  E-value=4.6e-30  Score=278.15  Aligned_cols=215  Identities=35%  Similarity=0.542  Sum_probs=182.7

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      .....+.++|++|+|++++++.|.+.+.. +.++        ..++++||+||||||||++|++||.+++.+|+.+++++
T Consensus        45 ~~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~  123 (495)
T TIGR01241        45 LNEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD  123 (495)
T ss_pred             ccCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH
Confidence            33456789999999999999999987764 3332        34579999999999999999999999999999999999


Q ss_pred             cccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcc
Q psy16204        283 LTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSI  362 (577)
Q Consensus       283 l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  362 (577)
                      +.+.+.|..++.++.+|+.                                                             
T Consensus       124 ~~~~~~g~~~~~l~~~f~~-------------------------------------------------------------  142 (495)
T TIGR01241       124 FVEMFVGVGASRVRDLFEQ-------------------------------------------------------------  142 (495)
T ss_pred             HHHHHhcccHHHHHHHHHH-------------------------------------------------------------
Confidence            9999999999999988876                                                             


Q ss_pred             ccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHHH
Q psy16204        363 FSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEAS  440 (577)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~~  440 (577)
                                                                      ++.+.||||||||||.++..++.+  +.+...
T Consensus       143 ------------------------------------------------a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~  174 (495)
T TIGR01241       143 ------------------------------------------------AKKNAPCIIFIDEIDAVGRQRGAGLGGGNDER  174 (495)
T ss_pred             ------------------------------------------------HHhcCCCEEEEechhhhhhccccCcCCccHHH
Confidence                                                            777889999999999999887542  334566


Q ss_pred             HHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCHH
Q psy16204        441 RRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDFH  493 (577)
Q Consensus       441 ~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl~  493 (577)
                      .++++.||..||++...    .+|+||+|||+|+.|+++++|+.+++.                           ++++.
T Consensus       175 ~~~~~~lL~~~d~~~~~----~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~  250 (495)
T TIGR01241       175 EQTLNQLLVEMDGFGTN----TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLK  250 (495)
T ss_pred             HHHHHHHHhhhccccCC----CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHH
Confidence            78999999999998753    569999999999999999998544432                           34788


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhC
Q psy16204        494 KISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR  556 (577)
Q Consensus       494 ~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~  556 (577)
                      .+|..+.||+++||.++|++|+..++++..                 ..|+.+||.+|+.++.
T Consensus       251 ~la~~t~G~sgadl~~l~~eA~~~a~~~~~-----------------~~i~~~~l~~a~~~~~  296 (495)
T TIGR01241       251 AVARRTPGFSGADLANLLNEAALLAARKNK-----------------TEITMNDIEEAIDRVI  296 (495)
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CCCCHHHHHHHHHHHh
Confidence            999999999999999999999988877642                 4799999999999874

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.96  E-value=5.8e-29  Score=259.45  Aligned_cols=216  Identities=38%  Similarity=0.547  Sum_probs=181.7

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc--------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF--------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~--------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      ..+...|.+.|++|+|++++++.|.+++.+|+.+++.        ++++|||||||||||++|+++|++++.+|+.+.++
T Consensus       111 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~  190 (364)
T TIGR01242       111 MEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS  190 (364)
T ss_pred             ceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchH
Confidence            3445678899999999999999999999999888754        47899999999999999999999999999999998


Q ss_pred             ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204        282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS  361 (577)
Q Consensus       282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  361 (577)
                      ++..+|.|+....++.+|..                                                            
T Consensus       191 ~l~~~~~g~~~~~i~~~f~~------------------------------------------------------------  210 (364)
T TIGR01242       191 ELVRKYIGEGARLVREIFEL------------------------------------------------------------  210 (364)
T ss_pred             HHHHHhhhHHHHHHHHHHHH------------------------------------------------------------
Confidence            88888888888888877765                                                            


Q ss_pred             cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC--hhHH
Q psy16204        362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS--EHEA  439 (577)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~--~~~~  439 (577)
                                                                       ++...|+||||||||.++..+..+.  .+..
T Consensus       211 -------------------------------------------------a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~  241 (364)
T TIGR01242       211 -------------------------------------------------AKEKAPSIIFIDEIDAIAAKRTDSGTSGDRE  241 (364)
T ss_pred             -------------------------------------------------HHhcCCcEEEhhhhhhhccccccCCCCccHH
Confidence                                                             7777899999999999988764322  2334


Q ss_pred             HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCH
Q psy16204        440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDF  492 (577)
Q Consensus       440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl  492 (577)
                      ..+.+..||..++++...    .+|.||+|||+++.|+++++++.+++                           .++++
T Consensus       242 ~~~~l~~ll~~ld~~~~~----~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~  317 (364)
T TIGR01242       242 VQRTLMQLLAELDGFDPR----GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDL  317 (364)
T ss_pred             HHHHHHHHHHHhhCCCCC----CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCH
Confidence            456678888888886532    56999999999999999988744332                           24689


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHh
Q psy16204        493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC  555 (577)
Q Consensus       493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~  555 (577)
                      ..+|..++||+|+||.++|++|++.|+++..                 ..|+.+||.+|+.++
T Consensus       318 ~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~-----------------~~i~~~d~~~a~~~~  363 (364)
T TIGR01242       318 EAIAKMTEGASGADLKAICTEAGMFAIREER-----------------DYVTMDDFIKAVEKV  363 (364)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-----------------CccCHHHHHHHHHHh
Confidence            9999999999999999999999999998842                 479999999999875

Many proteins may score above the trusted cutoff because an internal

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.96  E-value=2e-28  Score=267.32  Aligned_cols=171  Identities=30%  Similarity=0.509  Sum_probs=145.0

Q ss_pred             hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCe------
Q psy16204        209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTT------  274 (577)
Q Consensus       209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~------  274 (577)
                      ...+...|.++|++|+|++.+++.|++++.+|+.+++.+        +++|||||||||||++|+++|++++.+      
T Consensus       170 ~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~  249 (512)
T TIGR03689       170 DLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETG  249 (512)
T ss_pred             cceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccC
Confidence            345677899999999999999999999999998887653        689999999999999999999998644      


Q ss_pred             ----EEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCc
Q psy16204        275 ----FFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAP  350 (577)
Q Consensus       275 ----fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  350 (577)
                          |+.+.++++.++|.|+++..++.+|+.|..                                              
T Consensus       250 ~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~----------------------------------------------  283 (512)
T TIGR03689       250 DKSYFLNIKGPELLNKYVGETERQIRLIFQRARE----------------------------------------------  283 (512)
T ss_pred             CceeEEeccchhhcccccchHHHHHHHHHHHHHH----------------------------------------------
Confidence                777888899999999999999999986321                                              


Q ss_pred             ccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccC
Q psy16204        351 TRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSM  430 (577)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~  430 (577)
                                                                                 .+....||||||||||.++..
T Consensus       284 -----------------------------------------------------------~a~~g~p~IIfIDEiD~L~~~  304 (512)
T TIGR03689       284 -----------------------------------------------------------KASDGRPVIVFFDEMDSIFRT  304 (512)
T ss_pred             -----------------------------------------------------------HhhcCCCceEEEehhhhhhcc
Confidence                                                                       134457999999999999998


Q ss_pred             CCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc
Q psy16204        431 RGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV  488 (577)
Q Consensus       431 r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~  488 (577)
                      |+.+..+...++++++||..||++...    .+|+||+|||+++.|+++++|+.+++.
T Consensus       305 R~~~~s~d~e~~il~~LL~~LDgl~~~----~~ViVI~ATN~~d~LDpALlRpGRfD~  358 (512)
T TIGR03689       305 RGSGVSSDVETTVVPQLLSELDGVESL----DNVIVIGASNREDMIDPAILRPGRLDV  358 (512)
T ss_pred             cCCCccchHHHHHHHHHHHHhcccccC----CceEEEeccCChhhCCHhhcCccccce
Confidence            876555555678899999999998753    579999999999999999999666554

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>CHL00176 ftsH cell division protein; Validated

Probab=99.96  E-value=4.3e-28  Score=270.94  Aligned_cols=211  Identities=33%  Similarity=0.506  Sum_probs=178.6

Q ss_pred             cCCCCCcccccCcHHHHHHHHHHHHCcCCCcc--------ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPE--------FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~--------~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      ....++|+||+|++++++.|.+.+.. +..++        .++++||+||||||||++|+++|.+++.||+.++++++.+
T Consensus       176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~  254 (638)
T CHL00176        176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE  254 (638)
T ss_pred             cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence            34568999999999999999998744 33333        3579999999999999999999999999999999999888


Q ss_pred             ccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccc
Q psy16204        286 KYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSV  365 (577)
Q Consensus       286 k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  365 (577)
                      .+.|.....++.+|..                                                                
T Consensus       255 ~~~g~~~~~vr~lF~~----------------------------------------------------------------  270 (638)
T CHL00176        255 MFVGVGAARVRDLFKK----------------------------------------------------------------  270 (638)
T ss_pred             HhhhhhHHHHHHHHHH----------------------------------------------------------------
Confidence            8888777777777766                                                                


Q ss_pred             cccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC--CChhHHHHHH
Q psy16204        366 MVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRF  443 (577)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~--~~~~~~~~~v  443 (577)
                                                                   ++.+.||||||||||.++..|+.  ++.+.....+
T Consensus       271 ---------------------------------------------A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~  305 (638)
T CHL00176        271 ---------------------------------------------AKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQT  305 (638)
T ss_pred             ---------------------------------------------HhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHH
Confidence                                                         77889999999999999987753  2345566788


Q ss_pred             HHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCHHHHH
Q psy16204        444 KAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDFHKIS  496 (577)
Q Consensus       444 ~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl~~LA  496 (577)
                      ++.||..||++..+    .+|+||+|||+++.|+++++|+.+++.                           ++++..+|
T Consensus       306 L~~LL~~~dg~~~~----~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA  381 (638)
T CHL00176        306 LNQLLTEMDGFKGN----KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIA  381 (638)
T ss_pred             HHHHHhhhccccCC----CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence            99999999988743    679999999999999999998665442                           34678999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHh
Q psy16204        497 KMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC  555 (577)
Q Consensus       497 ~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~  555 (577)
                      ..+.||+|+||.++|++|+..+.|+..                 ..||.+||++|+.++
T Consensus       382 ~~t~G~sgaDL~~lvneAal~a~r~~~-----------------~~It~~dl~~Ai~rv  423 (638)
T CHL00176        382 RRTPGFSGADLANLLNEAAILTARRKK-----------------ATITMKEIDTAIDRV  423 (638)
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHhCC-----------------CCcCHHHHHHHHHHH
Confidence            999999999999999999999887742                 469999999999987

>KOG0651|consensus

Probab=99.95  E-value=7.3e-28  Score=247.23  Aligned_cols=217  Identities=35%  Similarity=0.506  Sum_probs=188.7

Q ss_pred             hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204        209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSS  280 (577)
Q Consensus       209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~  280 (577)
                      +...+...+++++.|+|.......+.+.+.+|+..|.++        +++|||||||+|||.+|+++|..+++.|+.+.+
T Consensus       120 ~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~s  199 (388)
T KOG0651|consen  120 NMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVS  199 (388)
T ss_pred             HhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeH
Confidence            344455567899999999999999999999999988765        689999999999999999999999999999999


Q ss_pred             CccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCC
Q psy16204        281 STLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGP  360 (577)
Q Consensus       281 s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  360 (577)
                      +.+.++|.||+..++|+.|..                                                           
T Consensus       200 s~lv~kyiGEsaRlIRemf~y-----------------------------------------------------------  220 (388)
T KOG0651|consen  200 SALVDKYIGESARLIRDMFRY-----------------------------------------------------------  220 (388)
T ss_pred             hhhhhhhcccHHHHHHHHHHH-----------------------------------------------------------
Confidence            999999999999999999987                                                           


Q ss_pred             ccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhH
Q psy16204        361 SIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHE  438 (577)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~  438 (577)
                                                                        |+.+.||||||||||.++..+.+.  ..+.
T Consensus       221 --------------------------------------------------A~~~~pciifmdeiDAigGRr~se~Ts~dr  250 (388)
T KOG0651|consen  221 --------------------------------------------------AREVIPCIIFMDEIDAIGGRRFSEGTSSDR  250 (388)
T ss_pred             --------------------------------------------------HhhhCceEEeehhhhhhccEEeccccchhH
Confidence                                                              888999999999999999887432  3455


Q ss_pred             HHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccC
Q psy16204        439 ASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLD  491 (577)
Q Consensus       439 ~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vd  491 (577)
                      ...+.+-+||.+||++...    ..|-+|+|||+|+.|+++|+|..+++.                           .+|
T Consensus       251 eiqrTLMeLlnqmdgfd~l----~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid  326 (388)
T KOG0651|consen  251 EIQRTLMELLNQMDGFDTL----HRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEID  326 (388)
T ss_pred             HHHHHHHHHHHhhccchhc----ccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeecccccccccccc
Confidence            6777788888899988754    679999999999999999999876654                           347


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHh
Q psy16204        492 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC  555 (577)
Q Consensus       492 l~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~  555 (577)
                      .+++.+..+||.|+|+.+.|++|.+.+++...                 ..+-.|||.+++.++
T Consensus       327 ~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~-----------------~~vl~Ed~~k~vrk~  373 (388)
T KOG0651|consen  327 DEAILKLVDGFNGADLRNVCTEAGMFAIPEER-----------------DEVLHEDFMKLVRKQ  373 (388)
T ss_pred             HHHHHHHHhccChHHHhhhcccccccccchhh-----------------HHHhHHHHHHHHHHH
Confidence            89999999999999999999999999988754                 245678888888764

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=5.7e-28  Score=250.15  Aligned_cols=268  Identities=21%  Similarity=0.234  Sum_probs=227.6

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCcc---------ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-ccccc
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMPE---------FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRGE  290 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~~---------~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~~G~  290 (577)
                      .-|+||++||..+.-++....++..         .|++||+.||+|||||.+||.||+-.+.||+.|.+..+++ +|+|.
T Consensus        15 ~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGr   94 (444)
T COG1220          15 RYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGR   94 (444)
T ss_pred             hHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccc
Confidence            4579999999999999976444432         3589999999999999999999999999999999999998 99998


Q ss_pred             h-HHHHHHHHHHhhhhhccccCcce--------------eeccccCCCCCc---cchhhHHHHHHHHHhhcccccCCccc
Q psy16204        291 S-EKLVRLLFEMVSFLVGLHSNKTF--------------YLVGVLNGEPTT---TFAYNKQILQMNRRVLKGALTTAPTR  352 (577)
Q Consensus       291 ~-e~~vr~lF~~a~~~~~~~~~~~~--------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~  352 (577)
                      + ++++|++.+.|.++++....+++              .||+...-+|..   ...+......|++.+..|.+...-.+
T Consensus        95 DVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~eIe  174 (444)
T COG1220          95 DVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDKEIE  174 (444)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHcCCCCccEEE
Confidence            8 89999999998888877776666              667765433322   33556778999999999999999999


Q ss_pred             ccccCCCCcccccc-ccCCCCCCcchhhhhhhhcccCCCCcccCC--------------CCcchhhhhhhHHHHHhcCCe
Q psy16204        353 AENQESGPSIFSVM-VDGLGKGPWSMVAVVATHFTWGKKGTCQSH--------------EGHSGRINKNSLFQARCYAPS  417 (577)
Q Consensus       353 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~d~~~~~~~~~~~a~~~~p~  417 (577)
                      ..+.+.++..+.++ ++|+...-..++.|+...+..+++++....              +.|++.+..+++..+.+++  
T Consensus       175 iev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~G--  252 (444)
T COG1220         175 IEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQNG--  252 (444)
T ss_pred             EEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcC--
Confidence            99988766666666 789988888999999999999888887754              7899999999999999888  


Q ss_pred             EEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCc----CCCceEEEEEe----cCCchhhHHHhhcCcccccc
Q psy16204        418 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL----YEDKIIMILAA----TNHPYQLLTLCLEGVVIDVN  489 (577)
Q Consensus       418 IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~----~~~~~VlIIat----TN~p~~L~~allrr~~i~~~  489 (577)
                      ||||||||+++...+.++.+.+.+.|+..||..++|...++    .+.+|+++||+    ...|.+|++.|+.||++..+
T Consensus       253 IvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRVE  332 (444)
T COG1220         253 IVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRVE  332 (444)
T ss_pred             eEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEEE
Confidence            99999999999977655558899999999999999976543    47789999999    67899999999999999654


Q ss_pred             c
Q psy16204        490 L  490 (577)
Q Consensus       490 v  490 (577)
                      +
T Consensus       333 L  333 (444)
T COG1220         333 L  333 (444)
T ss_pred             c
Confidence            4

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.95  E-value=8e-27  Score=261.03  Aligned_cols=213  Identities=32%  Similarity=0.445  Sum_probs=181.1

Q ss_pred             CCCCcccccCcHHHHHHHHHHHHCcCC-------CccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccc
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAMVLPTI-------MPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYR  288 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~-------~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~  288 (577)
                      ....|+++.|.+.+++.|.+.+.+...       ....++++||+||||||||++|+++|.+++.+|+.++++++.+.+.
T Consensus       147 ~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~  226 (644)
T PRK10733        147 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV  226 (644)
T ss_pred             hhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence            346799999999999999998865322       1234578999999999999999999999999999999999998888


Q ss_pred             cchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccccccc
Q psy16204        289 GESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVD  368 (577)
Q Consensus       289 G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  368 (577)
                      |..+..++.+|..                                                                   
T Consensus       227 g~~~~~~~~~f~~-------------------------------------------------------------------  239 (644)
T PRK10733        227 GVGASRVRDMFEQ-------------------------------------------------------------------  239 (644)
T ss_pred             cccHHHHHHHHHH-------------------------------------------------------------------
Confidence            9888888888876                                                                   


Q ss_pred             CCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC--CChhHHHHHHHHH
Q psy16204        369 GLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFKAE  446 (577)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~--~~~~~~~~~v~~~  446 (577)
                                                                ++...||||||||||.++..|+.  ++.+...+++++.
T Consensus       240 ------------------------------------------a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~  277 (644)
T PRK10733        240 ------------------------------------------AKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQ  277 (644)
T ss_pred             ------------------------------------------HHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHH
Confidence                                                      77788999999999999988854  3445667789999


Q ss_pred             HHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCHHHHHHHc
Q psy16204        447 LLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDFHKISKML  499 (577)
Q Consensus       447 LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl~~LA~~t  499 (577)
                      ||..||++..+    ..|+||||||+|+.|+++++|+.+++                           .++|+..+|+.+
T Consensus       278 lL~~mdg~~~~----~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t  353 (644)
T PRK10733        278 MLVEMDGFEGN----EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGT  353 (644)
T ss_pred             HHHhhhcccCC----CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhC
Confidence            99999998753    67999999999999999998854443                           345788999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCC
Q psy16204        500 EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS  558 (577)
Q Consensus       500 ~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ps  558 (577)
                      .||+|+||.++|++|+..++|+..                 ..|+..||++|+.++.+.
T Consensus       354 ~G~sgadl~~l~~eAa~~a~r~~~-----------------~~i~~~d~~~a~~~v~~g  395 (644)
T PRK10733        354 PGFSGADLANLVNEAALFAARGNK-----------------RVVSMVEFEKAKDKIMMG  395 (644)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCC-----------------CcccHHHHHHHHHHHhcc
Confidence            999999999999999999987742                 469999999999987553

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.95  E-value=3.2e-27  Score=280.45  Aligned_cols=128  Identities=16%  Similarity=0.196  Sum_probs=105.6

Q ss_pred             hhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcC
Q psy16204        404 NKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEG  483 (577)
Q Consensus       404 ~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr  483 (577)
                      ++.+|.+|+..+||||||||||.|+...       .....++.||..||+.... ....+|+||||||+|+.||+|++|+
T Consensus      1721 Ir~lFelARk~SPCIIFIDEIDaL~~~d-------s~~ltL~qLLneLDg~~~~-~s~~~VIVIAATNRPD~LDPALLRP 1792 (2281)
T CHL00206       1721 ITLQFELAKAMSPCIIWIPNIHDLNVNE-------SNYLSLGLLVNSLSRDCER-CSTRNILVIASTHIPQKVDPALIAP 1792 (2281)
T ss_pred             HHHHHHHHHHCCCeEEEEEchhhcCCCc-------cceehHHHHHHHhcccccc-CCCCCEEEEEeCCCcccCCHhHcCC
Confidence            7889999999999999999999998742       1112478999999986432 1346799999999999999999997


Q ss_pred             cccccc------------------------------cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhh
Q psy16204        484 VVIDVN------------------------------LDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKE  533 (577)
Q Consensus       484 ~~i~~~------------------------------vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~  533 (577)
                      ++++..                              +|++.+|..|.||+|+||++||++|++.|+++..          
T Consensus      1793 GRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~k---------- 1862 (2281)
T CHL00206       1793 NKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKK---------- 1862 (2281)
T ss_pred             CCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC----------
Confidence            655431                              3678999999999999999999999999999863          


Q ss_pred             hhccCCCCCCCHHHHHHHHHHhC
Q psy16204        534 IKQEDIDLPVTEKDFREAIARCR  556 (577)
Q Consensus       534 ~~~~~~~~~It~~df~~Al~~~~  556 (577)
                             ..|+.+||+.|+.++.
T Consensus      1863 -------s~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206       1863 -------SIIDTNTIRSALHRQT 1878 (2281)
T ss_pred             -------CccCHHHHHHHHHHHH
Confidence                   3688999999998763

>KOG0733|consensus

Probab=99.94  E-value=1.1e-26  Score=253.46  Aligned_cols=253  Identities=23%  Similarity=0.321  Sum_probs=210.4

Q ss_pred             cCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCC---
Q psy16204        320 LNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSH---  396 (577)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  396 (577)
                      .|.+..+++|.-+...++-+.+.- -.+++.+..+|..||.|.+.-+||||||+..+-+-..+..++|.....++..   
T Consensus       185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv  263 (802)
T KOG0733|consen  185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV  263 (802)
T ss_pred             CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence            355556667777777777776665 7889999999999999999999999999999888888888899888888744   


Q ss_pred             CCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhh
Q psy16204        397 EGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQL  476 (577)
Q Consensus       397 ~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L  476 (577)
                      -|++++.++++|.+|..+.||||||||||.|.++|.. ...++.+|++.+||..||++.......+.|+||+|||+|+.|
T Consensus       264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl  342 (802)
T KOG0733|consen  264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL  342 (802)
T ss_pred             CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence            7899999999999999999999999999999999976 456788999999999999998776666889999999999999


Q ss_pred             HHHhhcCcccccc---------------------------cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCC--
Q psy16204        477 LTLCLEGVVIDVN---------------------------LDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQT--  527 (577)
Q Consensus       477 ~~allrr~~i~~~---------------------------vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~--  527 (577)
                      +++|.|.++|+.+                           +|+..||+.|.||.|+||.+||.+|+..|++|.+....  
T Consensus       343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p  422 (802)
T KOG0733|consen  343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP  422 (802)
T ss_pred             CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence            9999988777653                           48999999999999999999999999999999875221  


Q ss_pred             ----h------------hH--Hh---------hh---h-------------ccCCCCCCCHHHHHHHHHHhCCC------
Q psy16204        528 ----P------------AQ--IK---------EI---K-------------QEDIDLPVTEKDFREAIARCRKS------  558 (577)
Q Consensus       528 ----~------------~~--~~---------~~---~-------------~~~~~~~It~~df~~Al~~~~ps------  558 (577)
                          +            ++  ++         .+   .             ++...+.|..+||++|+..++||      
T Consensus       423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF  502 (802)
T KOG0733|consen  423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF  502 (802)
T ss_pred             cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence                0            01  11         00   0             11124569999999999999865      


Q ss_pred             -----CCHHHHHHHHHHHHhh
Q psy16204        559 -----VTAHDLSKYDSWMNEF  574 (577)
Q Consensus       559 -----v~~~~~~~~~~~~~~~  574 (577)
                           |+++|+..+++.+.++
T Consensus       503 ~tVPdVtW~dIGaL~~vR~eL  523 (802)
T KOG0733|consen  503 ATVPDVTWDDIGALEEVRLEL  523 (802)
T ss_pred             eecCCCChhhcccHHHHHHHH
Confidence                 7888888888777664

>KOG0732|consensus

Probab=99.94  E-value=8.4e-27  Score=267.43  Aligned_cols=237  Identities=32%  Similarity=0.497  Sum_probs=198.5

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhC-----CeEE
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECG-----TTFF  276 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~-----~~fv  276 (577)
                      +.+.....+.|++|+|++..++.|++.+..|+.+|++|        +||||+||||||||+.|+++|..|.     ..|+
T Consensus       254 dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisff  333 (1080)
T KOG0732|consen  254 DPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFF  333 (1080)
T ss_pred             CchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchh
Confidence            44555667899999999999999999999999999876        6899999999999999999999995     6788


Q ss_pred             EEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCccccccc
Q psy16204        277 NVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQ  356 (577)
Q Consensus       277 ~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  356 (577)
                      .-.+++..++|+|+.|..++.+|+.                                                       
T Consensus       334 mrkgaD~lskwvgEaERqlrllFee-------------------------------------------------------  358 (1080)
T KOG0732|consen  334 MRKGADCLSKWVGEAERQLRLLFEE-------------------------------------------------------  358 (1080)
T ss_pred             hhcCchhhccccCcHHHHHHHHHHH-------------------------------------------------------
Confidence            8899999999999999999999987                                                       


Q ss_pred             CCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCCh
Q psy16204        357 ESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSE  436 (577)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~  436 (577)
                                                                            |++..|+|||+||||.|++.|.+-. 
T Consensus       359 ------------------------------------------------------A~k~qPSIIffdeIdGlapvrSskq-  383 (1080)
T KOG0732|consen  359 ------------------------------------------------------AQKTQPSIIFFDEIDGLAPVRSSKQ-  383 (1080)
T ss_pred             ------------------------------------------------------HhccCceEEeccccccccccccchH-
Confidence                                                                  8999999999999999999985433 


Q ss_pred             hHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccccc--------------------------
Q psy16204        437 HEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL--------------------------  490 (577)
Q Consensus       437 ~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~v--------------------------  490 (577)
                      ......++..||..|||+.+.    ..|+||+|||+|+.+++++.|+++|+..+                          
T Consensus       384 Eqih~SIvSTLLaLmdGldsR----gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~  459 (1080)
T KOG0732|consen  384 EQIHASIVSTLLALMDGLDSR----GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPIS  459 (1080)
T ss_pred             HHhhhhHHHHHHHhccCCCCC----CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCC
Confidence            344567899999999999964    77999999999999999999999887654                          


Q ss_pred             --CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCH
Q psy16204        491 --DFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTA  561 (577)
Q Consensus       491 --dl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~  561 (577)
                        -+..||+.+.||.|+||+.||.+|++.++++....+-... ..+........|..+||..|+.+..|+-..
T Consensus       460 ~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~-~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R  531 (1080)
T KOG0732|consen  460 RELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSS-DKLLIDVALIKVEVRDFVEAMSRITPSSRR  531 (1080)
T ss_pred             HHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeeccc-ccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence              2479999999999999999999999999998653211100 000001112348889999999998877554

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.93  E-value=5e-25  Score=232.09  Aligned_cols=169  Identities=17%  Similarity=0.139  Sum_probs=129.2

Q ss_pred             CCCcccc-cCcHHHHHHHHHHHHC------cCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccccc
Q psy16204        217 NVQWNKV-AGLTEAKAILQEAMVL------PTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRG  289 (577)
Q Consensus       217 ~v~~~dI-iG~~~ak~~L~e~l~~------pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G  289 (577)
                      ..+++++ +|..-++.-+.+++..      .+..-+++.++|||||||||||++|++||+++|++|+.++++++.++|+|
T Consensus       111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG  190 (413)
T PLN00020        111 TRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG  190 (413)
T ss_pred             hcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence            3466777 5555444444433311      11223567899999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccC
Q psy16204        290 ESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDG  369 (577)
Q Consensus       290 ~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  369 (577)
                      ++|++||++|..|..+                                                                
T Consensus       191 EsEk~IR~~F~~A~~~----------------------------------------------------------------  206 (413)
T PLN00020        191 EPGKLIRQRYREAADI----------------------------------------------------------------  206 (413)
T ss_pred             cHHHHHHHHHHHHHHH----------------------------------------------------------------
Confidence            9999999999874311                                                                


Q ss_pred             CCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHH-HhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHH
Q psy16204        370 LGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQA-RCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELL  448 (577)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a-~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL  448 (577)
                                                               + .+.+||||||||||++++.++++......+.+..+||
T Consensus       207 -----------------------------------------a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLL  245 (413)
T PLN00020        207 -----------------------------------------IKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLM  245 (413)
T ss_pred             -----------------------------------------hhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHH
Confidence                                                     2 3457999999999999999875443444455568999


Q ss_pred             HHHhCCCC--------CcCCCceEEEEEecCCchhhHHHhhcCccccccc
Q psy16204        449 IQMDGLNS--------SLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL  490 (577)
Q Consensus       449 ~~mD~~~~--------~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~v  490 (577)
                      .+||+...        .......|+||+|||+|+.|+++|+|..+++..+
T Consensus       246 nl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i  295 (413)
T PLN00020        246 NIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY  295 (413)
T ss_pred             HHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee
Confidence            99997421        1123567999999999999999999987776533

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.89  E-value=1.9e-22  Score=215.67  Aligned_cols=268  Identities=19%  Similarity=0.209  Sum_probs=195.5

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCC---------ccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-cccc-
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIM---------PEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRG-  289 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~---------~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~~G-  289 (577)
                      +-|+||+++|..|..++....++         ...+++|||+||||||||++|++||+.++.+|+.+++..+++ +|+| 
T Consensus        12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~   91 (441)
T TIGR00390        12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR   91 (441)
T ss_pred             hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence            56899999999999988754222         223479999999999999999999999999999999999885 8999 


Q ss_pred             chHHHHHHHHHHhhhhhcc---ccCc---------ce--eecccc-CC--CCCccchhhHHHHHHHHHhhcccccCCccc
Q psy16204        290 ESEKLVRLLFEMVSFLVGL---HSNK---------TF--YLVGVL-NG--EPTTTFAYNKQILQMNRRVLKGALTTAPTR  352 (577)
Q Consensus       290 ~~e~~vr~lF~~a~~~~~~---~~~~---------~~--~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  352 (577)
                      +.+..++.+|+.|......   ++.+         .+  .|++.. +.  ..............+.+.+..|.+.....+
T Consensus        92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie  171 (441)
T TIGR00390        92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE  171 (441)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence            5689999999987332211   0000         00  233211 11  000011122457888999999999887777


Q ss_pred             ccccCCCCcccccc-ccCCCCCCcchhhhhhhhcccCCCCcccCC--------------CCcchhhhhhhHHHHHhcCCe
Q psy16204        353 AENQESGPSIFSVM-VDGLGKGPWSMVAVVATHFTWGKKGTCQSH--------------EGHSGRINKNSLFQARCYAPS  417 (577)
Q Consensus       353 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~d~~~~~~~~~~~a~~~~p~  417 (577)
                      ....+.+...+.++ ++|++.....+..|+...|+..+++.....              +.|++.+.++++..+..++  
T Consensus       172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~G--  249 (441)
T TIGR00390       172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSG--  249 (441)
T ss_pred             EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC--
Confidence            77665544434433 344444444677888877776666655433              6789999999988888777  


Q ss_pred             EEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCC----cCCCceEEEEEec----CCchhhHHHhhcCcccccc
Q psy16204        418 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS----LYEDKIIMILAAT----NHPYQLLTLCLEGVVIDVN  489 (577)
Q Consensus       418 IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~----~~~~~~VlIIatT----N~p~~L~~allrr~~i~~~  489 (577)
                      ||||||||+|+...++.+.+.+...|++.||..|+|...+    ..+..||++||+-    ..|.+|++.|..|+++...
T Consensus       250 IVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~  329 (441)
T TIGR00390       250 IIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVE  329 (441)
T ss_pred             EEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEE
Confidence            9999999999987755666788889999999999985433    2466899999994    5788899999999998544


Q ss_pred             c
Q psy16204        490 L  490 (577)
Q Consensus       490 v  490 (577)
                      +
T Consensus       330 L  330 (441)
T TIGR00390       330 L  330 (441)
T ss_pred             C
Confidence            3

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.88  E-value=3e-22  Score=214.30  Aligned_cols=267  Identities=19%  Similarity=0.228  Sum_probs=191.8

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCC---------ccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-cccc-
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIM---------PEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRG-  289 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~---------~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~~G-  289 (577)
                      ..|+||+++|..|..++....++         ...++++||+||||||||++|++||+.++.+|+.++++.+++ +|+| 
T Consensus        15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~   94 (443)
T PRK05201         15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR   94 (443)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence            45999999999999998652211         122478999999999999999999999999999999999986 7999 


Q ss_pred             chHHHHHHHHHHhhhhhccccCcce--------------eeccccCCC---CCccchhhHHHHHHHHHhhcccccCCccc
Q psy16204        290 ESEKLVRLLFEMVSFLVGLHSNKTF--------------YLVGVLNGE---PTTTFAYNKQILQMNRRVLKGALTTAPTR  352 (577)
Q Consensus       290 ~~e~~vr~lF~~a~~~~~~~~~~~~--------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  352 (577)
                      ..+..++.+|+.|...........+              .+++.....   .............+.+.+..|.+.....+
T Consensus        95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie  174 (443)
T PRK05201         95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE  174 (443)
T ss_pred             CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence            4589999999987433322111111              222211000   01111234558889999999998887777


Q ss_pred             ccccCCCCcccc-ccccCCCCCCcchhhhhhhhcccCCCCcccCC--------------CCcchhhhhhhHHHHHhcCCe
Q psy16204        353 AENQESGPSIFS-VMVDGLGKGPWSMVAVVATHFTWGKKGTCQSH--------------EGHSGRINKNSLFQARCYAPS  417 (577)
Q Consensus       353 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~d~~~~~~~~~~~a~~~~p~  417 (577)
                      ....+..+ .+. +.++|++.....+..|+...|+..+++.....              +.|++.+.++++..+..++  
T Consensus       175 i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~G--  251 (443)
T PRK05201        175 IEVAEAAP-MMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNG--  251 (443)
T ss_pred             EEecCCCC-cccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC--
Confidence            66655322 122 22345544445677777776665555544432              6689999999988887777  


Q ss_pred             EEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCc----CCCceEEEEEe----cCCchhhHHHhhcCcccccc
Q psy16204        418 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL----YEDKIIMILAA----TNHPYQLLTLCLEGVVIDVN  489 (577)
Q Consensus       418 IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~----~~~~~VlIIat----TN~p~~L~~allrr~~i~~~  489 (577)
                      ||||||||+|+...++.+.+.+.+.|++.||..|+|...+.    .+.+||++||+    ...|.+|++.|..|+++...
T Consensus       252 IVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~  331 (443)
T PRK05201        252 IVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVE  331 (443)
T ss_pred             EEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEE
Confidence            99999999999876555567888899999999999855432    46689999999    45788899999999998544


Q ss_pred             c
Q psy16204        490 L  490 (577)
Q Consensus       490 v  490 (577)
                      +
T Consensus       332 L  332 (443)
T PRK05201        332 L  332 (443)
T ss_pred             C
Confidence            3

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=7e-22  Score=223.30  Aligned_cols=238  Identities=21%  Similarity=0.193  Sum_probs=187.5

Q ss_pred             CChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHC---cCCCcccc-ceeEEecCCCCC
Q psy16204        184 VFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVL---PTIMPEFF-KEALERHSHGTG  259 (577)
Q Consensus       184 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~---pl~~~~~~-k~ILL~GPpGtG  259 (577)
                      |..+++.+.+...+|+|..-....+...+.+.+...-+.|+||++|...|.+++..   .+..+..| .++||.||+|||
T Consensus       454 v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVG  533 (786)
T COG0542         454 VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVG  533 (786)
T ss_pred             cCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCccc
Confidence            77888999999999999998877888888888888999999999999999999954   66666666 468999999999


Q ss_pred             hHHHHHHHHHHhC---CeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHH
Q psy16204        260 KTMLAKAVATECG---TTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQ  336 (577)
Q Consensus       260 KT~LAkaLA~el~---~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (577)
                      ||.|||+||..+.   ..++++++|++++++.                            |+.++|+|+||+||      
T Consensus       534 KTELAkaLA~~Lfg~e~aliR~DMSEy~EkHs----------------------------VSrLIGaPPGYVGy------  579 (786)
T COG0542         534 KTELAKALAEALFGDEQALIRIDMSEYMEKHS----------------------------VSRLIGAPPGYVGY------  579 (786)
T ss_pred             HHHHHHHHHHHhcCCCccceeechHHHHHHHH----------------------------HHHHhCCCCCCcee------
Confidence            9999999999997   7999999999987643                            67889999999999      


Q ss_pred             HHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCC
Q psy16204        337 MNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAP  416 (577)
Q Consensus       337 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p  416 (577)
                                                                                    +.++.++++   .+.+++
T Consensus       580 --------------------------------------------------------------eeGG~LTEa---VRr~Py  594 (786)
T COG0542         580 --------------------------------------------------------------EEGGQLTEA---VRRKPY  594 (786)
T ss_pred             --------------------------------------------------------------ccccchhHh---hhcCCC
Confidence                                                                          456667777   788888


Q ss_pred             eEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhC-----CCCCcCCCceEEEEEecCCchhhHHHhhcCcccccccC
Q psy16204        417 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG-----LNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLD  491 (577)
Q Consensus       417 ~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~-----~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~vd  491 (577)
                      |||+||||++.++            +|++.|||.||.     ..+...+.+|++||+|||--.....             
T Consensus       595 SViLlDEIEKAHp------------dV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~-------------  649 (786)
T COG0542         595 SVILLDEIEKAHP------------DVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEIL-------------  649 (786)
T ss_pred             eEEEechhhhcCH------------HHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHH-------------
Confidence            9999999999998            899999999984     3445578899999999996443322             


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHH
Q psy16204        492 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR  554 (577)
Q Consensus       492 l~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~  554 (577)
                           +.+.+ .......-+++..+..+++..   .|+.+.++.......+++.+++.+-+..
T Consensus       650 -----~~~~~-~~~~~~~~~~~~v~~~l~~~F---~PEFLNRid~II~F~~L~~~~l~~Iv~~  703 (786)
T COG0542         650 -----RDADG-DDFADKEALKEAVMEELKKHF---RPEFLNRIDEIIPFNPLSKEVLERIVDL  703 (786)
T ss_pred             -----hhccc-cccchhhhHHHHHHHHHHhhC---CHHHHhhcccEEeccCCCHHHHHHHHHH
Confidence                 22111 111223344555556666654   5777777776666677777777766554

>KOG2004|consensus

Probab=99.86  E-value=7e-22  Score=218.96  Aligned_cols=259  Identities=18%  Similarity=0.131  Sum_probs=195.1

Q ss_pred             cCCCccccchhcccccccccchhhhccCCCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHH
Q psy16204        155 LGFKPAVKKIIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQ  234 (577)
Q Consensus       155 ~~~~p~~~~lI~d~~se~~i~~ea~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~  234 (577)
                      .+....+.+++.++..............+++++.+++...-+||-.     +.++.-+.....+.-+|..|++++|+++.
T Consensus       350 ~~~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~-----S~En~dl~~Ak~iLdeDHYgm~dVKeRIL  424 (906)
T KOG2004|consen  350 LKMPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKS-----STENLDLARAKEILDEDHYGMEDVKERIL  424 (906)
T ss_pred             ccCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCC-----ChhhhhHHHHHHhhcccccchHHHHHHHH
Confidence            5666677778877777777777777778899999999999999843     33344455556678899999999999999


Q ss_pred             HHHHCcCCCcccc-ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcc
Q psy16204        235 EAMVLPTIMPEFF-KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKT  313 (577)
Q Consensus       235 e~l~~pl~~~~~~-k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~  313 (577)
                      +++.....++..- +-++|+||||||||++||.||..++..||+++...+.+-                           
T Consensus       425 EfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDv---------------------------  477 (906)
T KOG2004|consen  425 EFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDV---------------------------  477 (906)
T ss_pred             HHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccH---------------------------
Confidence            9997765554443 568999999999999999999999999999999877541                           


Q ss_pred             eeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcc
Q psy16204        314 FYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTC  393 (577)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (577)
                                                                .|+++|+.+|+|.++|+-...++.+-+.+         
T Consensus       478 ------------------------------------------AeIkGHRRTYVGAMPGkiIq~LK~v~t~N---------  506 (906)
T KOG2004|consen  478 ------------------------------------------AEIKGHRRTYVGAMPGKIIQCLKKVKTEN---------  506 (906)
T ss_pred             ------------------------------------------HhhcccceeeeccCChHHHHHHHhhCCCC---------
Confidence                                                      24678899999999998888775555433         


Q ss_pred             cCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCc---------CCCceE
Q psy16204        394 QSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL---------YEDKII  464 (577)
Q Consensus       394 ~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~---------~~~~~V  464 (577)
                                             .+++|||||++++.-.+++        .++||+.+|.-++..         ++-..|
T Consensus       507 -----------------------PliLiDEvDKlG~g~qGDP--------asALLElLDPEQNanFlDHYLdVp~DLSkV  555 (906)
T KOG2004|consen  507 -----------------------PLILIDEVDKLGSGHQGDP--------ASALLELLDPEQNANFLDHYLDVPVDLSKV  555 (906)
T ss_pred             -----------------------ceEEeehhhhhCCCCCCCh--------HHHHHHhcChhhccchhhhccccccchhhe
Confidence                                   4999999999995433333        568999998644432         355779


Q ss_pred             EEEEecCCchhhHHHhhcCccccc---cc----------CHHHHHHHcCCCCHH-----------HHHHHHHHHHHHHHH
Q psy16204        465 MILAATNHPYQLLTLCLEGVVIDV---NL----------DFHKISKMLEGYTGS-----------DIANLARDAAMMSIR  520 (577)
Q Consensus       465 lIIatTN~p~~L~~allrr~~i~~---~v----------dl~~LA~~t~G~sgs-----------DI~~l~~~Aa~~air  520 (577)
                      ++|||+|..+.|.++|++|+.+..   .+          .|-.-+..-.|++..           =|+..|++|..+.+.
T Consensus       556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLq  635 (906)
T KOG2004|consen  556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQ  635 (906)
T ss_pred             EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHH
Confidence            999999999999999999997632   11          111122223455543           278889999999998


Q ss_pred             HHHhcCC
Q psy16204        521 RKIMGQT  527 (577)
Q Consensus       521 r~~~~~~  527 (577)
                      +++....
T Consensus       636 k~iekI~  642 (906)
T KOG2004|consen  636 KQIEKIC  642 (906)
T ss_pred             HHHHHHH
Confidence            8875543

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.3e-21  Score=217.48  Aligned_cols=258  Identities=19%  Similarity=0.189  Sum_probs=182.9

Q ss_pred             CCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc-ceeEEecCCCCChH
Q psy16204        183 GVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-KEALERHSHGTGKT  261 (577)
Q Consensus       183 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-k~ILL~GPpGtGKT  261 (577)
                      .+++..+++.+.-+|+....     ++.-+.+...+.-.|..|++++|+++.+++....+.++.. .-+||+||||||||
T Consensus       290 ~ViRnYlDwll~lPW~~~sk-----~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKT  364 (782)
T COG0466         290 TVIRNYLDWLLDLPWGKRSK-----DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKT  364 (782)
T ss_pred             HHHHHHHHHHHhCCCccccc-----hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCch
Confidence            45566677777767764422     2222334445677899999999999999997766555544 34789999999999


Q ss_pred             HHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHh
Q psy16204        262 MLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRV  341 (577)
Q Consensus       262 ~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (577)
                      +|++.||+.++..|++++...+.+      |.                                                
T Consensus       365 SLgkSIA~al~RkfvR~sLGGvrD------EA------------------------------------------------  390 (782)
T COG0466         365 SLGKSIAKALGRKFVRISLGGVRD------EA------------------------------------------------  390 (782)
T ss_pred             hHHHHHHHHhCCCEEEEecCcccc------HH------------------------------------------------
Confidence            999999999999999999987633      22                                                


Q ss_pred             hcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEE
Q psy16204        342 LKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFI  421 (577)
Q Consensus       342 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfI  421 (577)
                                     |..+|+.+|+|.++|+-.++|+.+-+.                               + .|++|
T Consensus       391 ---------------EIRGHRRTYIGamPGrIiQ~mkka~~~-------------------------------N-Pv~LL  423 (782)
T COG0466         391 ---------------EIRGHRRTYIGAMPGKIIQGMKKAGVK-------------------------------N-PVFLL  423 (782)
T ss_pred             ---------------HhccccccccccCChHHHHHHHHhCCc-------------------------------C-CeEEe
Confidence                           345788999999999998887544432                               2 49999


Q ss_pred             ccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCc---------CCCceEEEEEecCCchhhHHHhhcCccccc---c
Q psy16204        422 DEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL---------YEDKIIMILAATNHPYQLLTLCLEGVVIDV---N  489 (577)
Q Consensus       422 DEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~---------~~~~~VlIIatTN~p~~L~~allrr~~i~~---~  489 (577)
                      ||||++.+.-.+++        .++||+.+|.-+++.         ++-.+|++|||+|..+.|+.+|++|+.+-.   .
T Consensus       424 DEIDKm~ss~rGDP--------aSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgY  495 (782)
T COG0466         424 DEIDKMGSSFRGDP--------ASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGY  495 (782)
T ss_pred             echhhccCCCCCCh--------HHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCC
Confidence            99999998655544        578999999655443         456789999999999999999999997632   1


Q ss_pred             cCH--HHHHHH--------cCCCCH-------HH----HHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCC--CCCCHH
Q psy16204        490 LDF--HKISKM--------LEGYTG-------SD----IANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID--LPVTEK  546 (577)
Q Consensus       490 vdl--~~LA~~--------t~G~sg-------sD----I~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~--~~It~~  546 (577)
                      .+.  -.||+.        -.|+..       +-    |....++|..+.+.|.+.......+.++-.....  ..|+..
T Consensus       496 t~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~  575 (782)
T COG0466         496 TEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEK  575 (782)
T ss_pred             ChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHH
Confidence            122  233332        134432       22    5777888999999998865554444444333322  246666


Q ss_pred             HHHHHHHH
Q psy16204        547 DFREAIAR  554 (577)
Q Consensus       547 df~~Al~~  554 (577)
                      ++.+.|-.
T Consensus       576 ~l~~yLG~  583 (782)
T COG0466         576 NLKKYLGV  583 (782)
T ss_pred             HHHHHhCC
Confidence            77666653

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.82  E-value=1.2e-19  Score=158.68  Aligned_cols=124  Identities=33%  Similarity=0.471  Sum_probs=108.0

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccch
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFA  329 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (577)
                      |||+||||||||++|+.+|+.++.+|+++++.++.+.+.+..+..++.+|..                            
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~----------------------------   52 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKK----------------------------   52 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHH----------------------------
T ss_pred             CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccccccc----------------------------
Confidence            6999999999999999999999999999999999988889999999888876                            


Q ss_pred             hhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHH
Q psy16204        330 YNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLF  409 (577)
Q Consensus       330 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  409 (577)
                                                                                                      
T Consensus        53 --------------------------------------------------------------------------------   52 (132)
T PF00004_consen   53 --------------------------------------------------------------------------------   52 (132)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhcC-CeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhh-cCccc
Q psy16204        410 QARCYA-PSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCL-EGVVI  486 (577)
Q Consensus       410 ~a~~~~-p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~all-rr~~i  486 (577)
                       +.... |+||||||+|.+.... ..........+++.|+..++.....   ..+++||+|||.++.|++.+. ++|..
T Consensus        53 -~~~~~~~~vl~iDe~d~l~~~~-~~~~~~~~~~~~~~L~~~l~~~~~~---~~~~~vI~ttn~~~~i~~~l~~~rf~~  126 (132)
T PF00004_consen   53 -AKKSAKPCVLFIDEIDKLFPKS-QPSSSSFEQRLLNQLLSLLDNPSSK---NSRVIVIATTNSPDKIDPALLRSRFDR  126 (132)
T ss_dssp             -HHHTSTSEEEEEETGGGTSHHC-STSSSHHHHHHHHHHHHHHHTTTTT---SSSEEEEEEESSGGGSCHHHHSTTSEE
T ss_pred             -ccccccceeeeeccchhccccc-ccccccccccccceeeecccccccc---cccceeEEeeCChhhCCHhHHhCCCcE
Confidence             55555 8999999999999977 4445667778999999999987753   356999999999999999999 55543

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.76  E-value=1.3e-17  Score=189.48  Aligned_cols=183  Identities=20%  Similarity=0.189  Sum_probs=138.6

Q ss_pred             CCCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHC---cCCCccccc-eeEEecCCC
Q psy16204        182 DGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVL---PTIMPEFFK-EALERHSHG  257 (577)
Q Consensus       182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~---pl~~~~~~k-~ILL~GPpG  257 (577)
                      ..+..+++...+...+|+|...+...+...+.+......+.|+||+.+++.|.+++..   .+..+..+. .+||+||||
T Consensus       415 ~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~G  494 (731)
T TIGR02639       415 ANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTG  494 (731)
T ss_pred             cccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCC
Confidence            4577899999999999999887776666777777777889999999999999999864   333444454 589999999


Q ss_pred             CChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHH
Q psy16204        258 TGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQM  337 (577)
Q Consensus       258 tGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (577)
                      ||||++|++||+.++.+++.++++++.+++.                            +..+.+++++|+|+       
T Consensus       495 vGKT~lA~~la~~l~~~~~~~d~se~~~~~~----------------------------~~~lig~~~gyvg~-------  539 (731)
T TIGR02639       495 VGKTELAKQLAEALGVHLERFDMSEYMEKHT----------------------------VSRLIGAPPGYVGF-------  539 (731)
T ss_pred             ccHHHHHHHHHHHhcCCeEEEeCchhhhccc----------------------------HHHHhcCCCCCccc-------
Confidence            9999999999999999999999998765421                            12334556666665       


Q ss_pred             HHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCe
Q psy16204        338 NRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPS  417 (577)
Q Consensus       338 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~  417 (577)
                                                                                   +.++.+.+.   ++.+..+
T Consensus       540 -------------------------------------------------------------~~~~~l~~~---~~~~p~~  555 (731)
T TIGR02639       540 -------------------------------------------------------------EQGGLLTEA---VRKHPHC  555 (731)
T ss_pred             -------------------------------------------------------------chhhHHHHH---HHhCCCe
Confidence                                                                         122223333   4556679


Q ss_pred             EEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCC-----CCCcCCCceEEEEEecCCchh
Q psy16204        418 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGL-----NSSLYEDKIIMILAATNHPYQ  475 (577)
Q Consensus       418 IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~-----~~~~~~~~~VlIIatTN~p~~  475 (577)
                      ||||||||++++            .+++.||+.||.-     .+...+..+++||+|||....
T Consensus       556 VvllDEieka~~------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~  606 (731)
T TIGR02639       556 VLLLDEIEKAHP------------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGAS  606 (731)
T ss_pred             EEEEechhhcCH------------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchh
Confidence            999999999976            6799999999852     122345678999999997543

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.76  E-value=9.9e-18  Score=191.12  Aligned_cols=181  Identities=18%  Similarity=0.168  Sum_probs=136.1

Q ss_pred             CCCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHC---cCCCcccc-ceeEEecCCC
Q psy16204        182 DGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVL---PTIMPEFF-KEALERHSHG  257 (577)
Q Consensus       182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~---pl~~~~~~-k~ILL~GPpG  257 (577)
                      ..+...++.+.+...+|+|...+...+...+.+.....-..|+||+++++.|.+++..   .+..+..+ .++||+||||
T Consensus       419 ~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~G  498 (758)
T PRK11034        419 KTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTG  498 (758)
T ss_pred             cccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCC
Confidence            3467788999999999999998877777777777777888999999999999999864   23333334 4699999999


Q ss_pred             CChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHH
Q psy16204        258 TGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQM  337 (577)
Q Consensus       258 tGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (577)
                      ||||++|++||+.++.+|+.++|+++.+.+      .+.                      .+.|.+++|.|+       
T Consensus       499 vGKT~lAk~LA~~l~~~~i~id~se~~~~~------~~~----------------------~LiG~~~gyvg~-------  543 (758)
T PRK11034        499 VGKTEVTVQLSKALGIELLRFDMSEYMERH------TVS----------------------RLIGAPPGYVGF-------  543 (758)
T ss_pred             CCHHHHHHHHHHHhCCCcEEeechhhcccc------cHH----------------------HHcCCCCCcccc-------
Confidence            999999999999999999999998875431      112                      223445555554       


Q ss_pred             HHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCe
Q psy16204        338 NRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPS  417 (577)
Q Consensus       338 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~  417 (577)
                                                                                   +.++.+.++   .+.+..+
T Consensus       544 -------------------------------------------------------------~~~g~L~~~---v~~~p~s  559 (758)
T PRK11034        544 -------------------------------------------------------------DQGGLLTDA---VIKHPHA  559 (758)
T ss_pred             -------------------------------------------------------------cccchHHHH---HHhCCCc
Confidence                                                                         122233333   4456679


Q ss_pred             EEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCC-----CCCcCCCceEEEEEecCCc
Q psy16204        418 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGL-----NSSLYEDKIIMILAATNHP  473 (577)
Q Consensus       418 IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~-----~~~~~~~~~VlIIatTN~p  473 (577)
                      ||||||||++++            .+++.||+.||.-     .+...+..+++||+|||.-
T Consensus       560 VlllDEieka~~------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g  608 (758)
T PRK11034        560 VLLLDEIEKAHP------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG  608 (758)
T ss_pred             EEEeccHhhhhH------------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcC
Confidence            999999999976            6899999999842     1223455789999999944

>KOG0730|consensus

Probab=99.76  E-value=4.7e-18  Score=187.89  Aligned_cols=219  Identities=24%  Similarity=0.296  Sum_probs=178.8

Q ss_pred             CccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCccc---CCCCcch
Q psy16204        325 TTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQ---SHEGHSG  401 (577)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~  401 (577)
                      ....|...+...+.+.+..+-..++-+...+.-+|.+++.|+++|+|++-...+=+......+..-.+++   ++.|+.+
T Consensus       184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte  263 (693)
T KOG0730|consen  184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE  263 (693)
T ss_pred             cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH
Confidence            5667778888899999999999999999999999999999999999999885544444444444444443   5589999


Q ss_pred             hhhhhhHHHHHhcC-CeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204        402 RINKNSLFQARCYA-PSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC  480 (577)
Q Consensus       402 ~~~~~~~~~a~~~~-p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~al  480 (577)
                      ..++.+|.++.+++ |++|||||+|.+|++|.....  ..+++..+|+..||+....    .+++||+|||+|+.|++++
T Consensus       264 ~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~~----~~vivl~atnrp~sld~al  337 (693)
T KOG0730|consen  264 SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKPD----AKVIVLAATNRPDSLDPAL  337 (693)
T ss_pred             HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcCc----CcEEEEEecCCccccChhh
Confidence            99999999999999 999999999999999865443  6789999999999999843    6799999999999999999


Q ss_pred             hcCccccc---------------------------ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhh
Q psy16204        481 LEGVVIDV---------------------------NLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKE  533 (577)
Q Consensus       481 lrr~~i~~---------------------------~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~  533 (577)
                      .| ++++.                           ++++..+|..|+||+|+|+..+|++|++.++|+            
T Consensus       338 RR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~------------  404 (693)
T KOG0730|consen  338 RR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR------------  404 (693)
T ss_pred             hc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh------------
Confidence            98 44433                           237899999999999999999999999999988            


Q ss_pred             hhccCCCCCCCHHHHHHHHHHhC-----------CCCCHHHHHHHHHHHH
Q psy16204        534 IKQEDIDLPVTEKDFREAIARCR-----------KSVTAHDLSKYDSWMN  572 (577)
Q Consensus       534 ~~~~~~~~~It~~df~~Al~~~~-----------psv~~~~~~~~~~~~~  572 (577)
                                ++++|+.|+..++           |.|+++|+..+++...
T Consensus       405 ----------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~  444 (693)
T KOG0730|consen  405 ----------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKR  444 (693)
T ss_pred             ----------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHH
Confidence                      3455555555555           4467777766665544

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.73  E-value=1.6e-17  Score=165.73  Aligned_cols=167  Identities=19%  Similarity=0.220  Sum_probs=111.4

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccccc
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRG  289 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G  289 (577)
                      .......+..+++++||+..+..+.-++..-..+.+.+.++|||||||+|||+||+.||++++.+|..+++..+...   
T Consensus        13 ~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~---   89 (233)
T PF05496_consen   13 PLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA---   89 (233)
T ss_dssp             -HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC---
T ss_pred             hhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH---
Confidence            44456777899999999999999998886655566677899999999999999999999999999999888643110   


Q ss_pred             chHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccC
Q psy16204        290 ESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDG  369 (577)
Q Consensus       290 ~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  369 (577)
                         .-+..++..                                                                    
T Consensus        90 ---~dl~~il~~--------------------------------------------------------------------   98 (233)
T PF05496_consen   90 ---GDLAAILTN--------------------------------------------------------------------   98 (233)
T ss_dssp             ---HHHHHHHHT--------------------------------------------------------------------
T ss_pred             ---HHHHHHHHh--------------------------------------------------------------------
Confidence               111111110                                                                    


Q ss_pred             CCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHH
Q psy16204        370 LGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLI  449 (577)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~  449 (577)
                                                               .  ....|||||||+.+..            .++..|+.
T Consensus        99 -----------------------------------------l--~~~~ILFIDEIHRlnk------------~~qe~Llp  123 (233)
T PF05496_consen   99 -----------------------------------------L--KEGDILFIDEIHRLNK------------AQQEILLP  123 (233)
T ss_dssp             ---------------------------------------------TT-EEEECTCCC--H------------HHHHHHHH
T ss_pred             -----------------------------------------c--CCCcEEEEechhhccH------------HHHHHHHH
Confidence                                                     1  2346999999999976            56788999


Q ss_pred             HHhCCCCCc------------CCCceEEEEEecCCchhhHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHH
Q psy16204        450 QMDGLNSSL------------YEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDA  514 (577)
Q Consensus       450 ~mD~~~~~~------------~~~~~VlIIatTN~p~~L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~A  514 (577)
                      .|+...-..            .+-.+.-+|+||++...|...+..||.+...+++         |+..||..++..+
T Consensus       124 amEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~---------Y~~~el~~Iv~r~  191 (233)
T PF05496_consen  124 AMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEF---------YSEEELAKIVKRS  191 (233)
T ss_dssp             HHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE-------------THHHHHHHHHHC
T ss_pred             HhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhc---------CCHHHHHHHHHHH
Confidence            998633110            1224578999999999999999999998766666         8888888887654

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>KOG0744|consensus

Probab=99.72  E-value=1.7e-17  Score=172.08  Aligned_cols=164  Identities=28%  Similarity=0.310  Sum_probs=127.8

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccc------c---ceeEEecCCCCChHHHHHHHHHHhC---------CeEEEEec
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEF------F---KEALERHSHGTGKTMLAKAVATECG---------TTFFNVSS  280 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~------~---k~ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~  280 (577)
                      .|+.++=-...|+.|..|+...+...+.      .   +-||++||||||||+|+|+||+.+.         ..++++++
T Consensus       140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins  219 (423)
T KOG0744|consen  140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS  219 (423)
T ss_pred             hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence            6888888889999999887554333221      1   3489999999999999999999985         47899999


Q ss_pred             CccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCC
Q psy16204        281 STLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGP  360 (577)
Q Consensus       281 s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  360 (577)
                      ..+.+||++++.++|..+|+....+.                                   .                  
T Consensus       220 hsLFSKWFsESgKlV~kmF~kI~ELv-----------------------------------~------------------  246 (423)
T KOG0744|consen  220 HSLFSKWFSESGKLVAKMFQKIQELV-----------------------------------E------------------  246 (423)
T ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHH-----------------------------------h------------------
Confidence            99999999999999999998722111                                   0                  


Q ss_pred             ccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCC---CCChh
Q psy16204        361 SIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRG---SDSEH  437 (577)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~---~~~~~  437 (577)
                                                                         ....--.++|||++.|+..|.   +..+.
T Consensus       247 ---------------------------------------------------d~~~lVfvLIDEVESLa~aR~s~~S~~Ep  275 (423)
T KOG0744|consen  247 ---------------------------------------------------DRGNLVFVLIDEVESLAAARTSASSRNEP  275 (423)
T ss_pred             ---------------------------------------------------CCCcEEEEEeHHHHHHHHHHHhhhcCCCC
Confidence                                                               001113678999999998873   23344


Q ss_pred             HHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccccc
Q psy16204        438 EASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL  490 (577)
Q Consensus       438 ~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~v  490 (577)
                      ...-|++|+||.+||.+...    .||+|+||+|-.+.||.++.+|..+...|
T Consensus       276 sDaIRvVNalLTQlDrlK~~----~NvliL~TSNl~~siD~AfVDRADi~~yV  324 (423)
T KOG0744|consen  276 SDAIRVVNALLTQLDRLKRY----PNVLILATSNLTDSIDVAFVDRADIVFYV  324 (423)
T ss_pred             chHHHHHHHHHHHHHHhccC----CCEEEEeccchHHHHHHHhhhHhhheeec
Confidence            44558999999999999854    78999999999999999999987654433

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.72  E-value=1e-16  Score=184.98  Aligned_cols=183  Identities=21%  Similarity=0.176  Sum_probs=142.7

Q ss_pred             CChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCc---CCCccccce-eEEecCCCCC
Q psy16204        184 VFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLP---TIMPEFFKE-ALERHSHGTG  259 (577)
Q Consensus       184 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~p---l~~~~~~k~-ILL~GPpGtG  259 (577)
                      +..+++.+.++..+|+|...+...+...+.+.....-+.|+||+.+++.|.+++...   +..+..+.+ +||+||||||
T Consensus       529 v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvG  608 (852)
T TIGR03345       529 VDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVG  608 (852)
T ss_pred             ecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCC
Confidence            678899999999999999988887777777777788899999999999999998653   444555655 8999999999


Q ss_pred             hHHHHHHHHHHh---CCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHH
Q psy16204        260 KTMLAKAVATEC---GTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQ  336 (577)
Q Consensus       260 KT~LAkaLA~el---~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (577)
                      ||++|++||+.+   ...|+.++++++.+.+.                            +..+.|.+++|+|+      
T Consensus       609 KT~lA~~La~~l~~~~~~~~~~dmse~~~~~~----------------------------~~~l~g~~~gyvg~------  654 (852)
T TIGR03345       609 KTETALALAELLYGGEQNLITINMSEFQEAHT----------------------------VSRLKGSPPGYVGY------  654 (852)
T ss_pred             HHHHHHHHHHHHhCCCcceEEEeHHHhhhhhh----------------------------hccccCCCCCcccc------
Confidence            999999999998   45889999987754311                            34566778888777      


Q ss_pred             HHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCC
Q psy16204        337 MNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAP  416 (577)
Q Consensus       337 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p  416 (577)
                                                                                    +.++.+.+.   .+.+.+
T Consensus       655 --------------------------------------------------------------~~~g~L~~~---v~~~p~  669 (852)
T TIGR03345       655 --------------------------------------------------------------GEGGVLTEA---VRRKPY  669 (852)
T ss_pred             --------------------------------------------------------------cccchHHHH---HHhCCC
Confidence                                                                          122333333   455777


Q ss_pred             eEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCC-----CCCcCCCceEEEEEecCCchhhH
Q psy16204        417 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGL-----NSSLYEDKIIMILAATNHPYQLL  477 (577)
Q Consensus       417 ~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~-----~~~~~~~~~VlIIatTN~p~~L~  477 (577)
                      +||+|||||++++            .+++.|++.+|.-     .+...+..+.+||+|||.....+
T Consensus       670 svvllDEieka~~------------~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~  723 (852)
T TIGR03345       670 SVVLLDEVEKAHP------------DVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLI  723 (852)
T ss_pred             cEEEEechhhcCH------------HHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHH
Confidence            9999999999876            6788999999842     22334567899999999876644

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR00763 lon ATP-dependent protease La

Probab=99.71  E-value=8.9e-17  Score=183.79  Aligned_cols=159  Identities=18%  Similarity=0.171  Sum_probs=109.2

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccc-cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHH
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEF-FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRL  297 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~-~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~  297 (577)
                      .-++++|++++++.|.+++..+...... ...+||+||||||||++|++||++++.+|+.++++.+...         .+
T Consensus       318 l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~---------~~  388 (775)
T TIGR00763       318 LDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDE---------AE  388 (775)
T ss_pred             hhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccH---------HH
Confidence            4457999999999999988765433322 2369999999999999999999999999999998654210         00


Q ss_pred             HHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcch
Q psy16204        298 LFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSM  377 (577)
Q Consensus       298 lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (577)
                      +..                      .                                                      
T Consensus       389 i~g----------------------~------------------------------------------------------  392 (775)
T TIGR00763       389 IRG----------------------H------------------------------------------------------  392 (775)
T ss_pred             HcC----------------------C------------------------------------------------------
Confidence            000                      0                                                      


Q ss_pred             hhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCC
Q psy16204        378 VAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS  457 (577)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~  457 (577)
                                     ...++|.+.+.+.+.+..+....| ||||||||++++...++        ..+.||+.||.....
T Consensus       393 ---------------~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~--------~~~aLl~~ld~~~~~  448 (775)
T TIGR00763       393 ---------------RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD--------PASALLEVLDPEQNN  448 (775)
T ss_pred             ---------------CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC--------HHHHHHHhcCHHhcC
Confidence                           011223333333444555554455 89999999998743222        256788888742111


Q ss_pred             ---------cCCCceEEEEEecCCchhhHHHhhcCccc
Q psy16204        458 ---------LYEDKIIMILAATNHPYQLLTLCLEGVVI  486 (577)
Q Consensus       458 ---------~~~~~~VlIIatTN~p~~L~~allrr~~i  486 (577)
                               .++..++++|+|||.++.|++++++|+.+
T Consensus       449 ~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~v  486 (775)
T TIGR00763       449 AFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEV  486 (775)
T ss_pred             ccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeE
Confidence                     12346799999999999999999999854

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.70  E-value=2.8e-16  Score=157.34  Aligned_cols=82  Identities=22%  Similarity=0.345  Sum_probs=66.8

Q ss_pred             cccccCcHHHHHHHHHHHHCcCCC----------ccccceeEEecCCCCChHHHHHHHHHHh-------CCeEEEEecCc
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPTIM----------PEFFKEALERHSHGTGKTMLAKAVATEC-------GTTFFNVSSST  282 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl~~----------~~~~k~ILL~GPpGtGKT~LAkaLA~el-------~~~fv~v~~s~  282 (577)
                      +++++|++.+|+.|++++.++...          +....++||+||||||||++|+++|+.+       ..+++++++++
T Consensus         5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~   84 (261)
T TIGR02881         5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD   84 (261)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence            578999999999999887664221          2223579999999999999999999875       24789999999


Q ss_pred             cccccccchHHHHHHHHHH
Q psy16204        283 LTSKYRGESEKLVRLLFEM  301 (577)
Q Consensus       283 l~~k~~G~~e~~vr~lF~~  301 (577)
                      +..+|+|+.+..++++|+.
T Consensus        85 l~~~~~g~~~~~~~~~~~~  103 (261)
T TIGR02881        85 LVGEYIGHTAQKTREVIKK  103 (261)
T ss_pred             hhhhhccchHHHHHHHHHh
Confidence            9999999988888877764

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>KOG0736|consensus

Probab=99.69  E-value=7.8e-16  Score=172.44  Aligned_cols=236  Identities=19%  Similarity=0.298  Sum_probs=169.2

Q ss_pred             cCcHHHHHHHHHHHHCcCCCc----cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHH
Q psy16204        224 AGLTEAKAILQEAMVLPTIMP----EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLF  299 (577)
Q Consensus       224 iG~~~ak~~L~e~l~~pl~~~----~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF  299 (577)
                      -+++.....+..++.-++...    .+...+||+|+||||||++++++|+++|.+++.++|.++.....+.+|..+...|
T Consensus       404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f  483 (953)
T KOG0736|consen  404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIF  483 (953)
T ss_pred             ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHH
Confidence            344444444555543222111    2334689999999999999999999999999999999998888888888888777


Q ss_pred             HHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhh
Q psy16204        300 EMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVA  379 (577)
Q Consensus       300 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (577)
                      .+                                                                              
T Consensus       484 ~~------------------------------------------------------------------------------  485 (953)
T KOG0736|consen  484 SR------------------------------------------------------------------------------  485 (953)
T ss_pred             HH------------------------------------------------------------------------------
Confidence            76                                                                              


Q ss_pred             hhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcC
Q psy16204        380 VVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLY  459 (577)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~  459 (577)
                                                     |+++.|+||||-.+|.+...+.+ +++.....+++.++. +|...   .
T Consensus       486 -------------------------------a~~~~pavifl~~~dvl~id~dg-ged~rl~~~i~~~ls-~e~~~---~  529 (953)
T KOG0736|consen  486 -------------------------------ARRCSPAVLFLRNLDVLGIDQDG-GEDARLLKVIRHLLS-NEDFK---F  529 (953)
T ss_pred             -------------------------------HhhcCceEEEEeccceeeecCCC-chhHHHHHHHHHHHh-ccccc---C
Confidence                                           88999999999999999965543 445545555555555 33333   2


Q ss_pred             CCceEEEEEecCCchh-------------------------hHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHH
Q psy16204        460 EDKIIMILAATNHPYQ-------------------------LLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDA  514 (577)
Q Consensus       460 ~~~~VlIIatTN~p~~-------------------------L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~A  514 (577)
                      ...+++|||+|+..+.                         |++.+.-+..++.++.++.+|..|.||+-+|+..++..+
T Consensus       530 ~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~  609 (953)
T KOG0736|consen  530 SCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHS  609 (953)
T ss_pred             CCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCc
Confidence            4578999999988766                         455555566677778899999999999999999999887


Q ss_pred             HHHHHHHHHhcCChhHHhhhhcc-C--CCCCCCHHHHHHHHHHhC------------CCCCHHHHHHHHHHHHh
Q psy16204        515 AMMSIRRKIMGQTPAQIKEIKQE-D--IDLPVTEKDFREAIARCR------------KSVTAHDLSKYDSWMNE  573 (577)
Q Consensus       515 a~~airr~~~~~~~~~~~~~~~~-~--~~~~It~~df~~Al~~~~------------psv~~~~~~~~~~~~~~  573 (577)
                      ...+.-+...+.......+.+.. .  ....++++||.+|+.++|            |.|+++|+..+++-+.+
T Consensus       610 s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~e  683 (953)
T KOG0736|consen  610 SLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTE  683 (953)
T ss_pred             hHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHH
Confidence            44444333221111111111111 1  246799999999999775            88999999888877654

>CHL00181 cbbX CbbX; Provisional

Probab=99.68  E-value=1.6e-15  Score=155.50  Aligned_cols=82  Identities=21%  Similarity=0.191  Sum_probs=63.0

Q ss_pred             cccccCcHHHHHHHHHHHHCc----------CCCccccceeEEecCCCCChHHHHHHHHHHhC-------CeEEEEecCc
Q psy16204        220 WNKVAGLTEAKAILQEAMVLP----------TIMPEFFKEALERHSHGTGKTMLAKAVATECG-------TTFFNVSSST  282 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~p----------l~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~-------~~fv~v~~s~  282 (577)
                      +++++|++++|+.|.+.+.+.          +..+....++||+||||||||++|+++|+.+.       .+|+.+++++
T Consensus        22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~  101 (287)
T CHL00181         22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD  101 (287)
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence            568999999999998886441          11122223589999999999999999999862       3689999998


Q ss_pred             cccccccchHHHHHHHHHH
Q psy16204        283 LTSKYRGESEKLVRLLFEM  301 (577)
Q Consensus       283 l~~k~~G~~e~~vr~lF~~  301 (577)
                      +..+|+|.++..++.+|+.
T Consensus       102 l~~~~~g~~~~~~~~~l~~  120 (287)
T CHL00181        102 LVGQYIGHTAPKTKEVLKK  120 (287)
T ss_pred             HHHHHhccchHHHHHHHHH
Confidence            8888888877666666643

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.68  E-value=9e-16  Score=176.58  Aligned_cols=186  Identities=22%  Similarity=0.212  Sum_probs=140.0

Q ss_pred             CCCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHC---cCCCccccc-eeEEecCCC
Q psy16204        182 DGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVL---PTIMPEFFK-EALERHSHG  257 (577)
Q Consensus       182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~---pl~~~~~~k-~ILL~GPpG  257 (577)
                      ..+..+++.+.+...+|+|...+...+...+.+.....-+.|+||+.+++.|..++..   .+..+..+. .+||+||+|
T Consensus       470 ~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~G  549 (821)
T CHL00095        470 PVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTG  549 (821)
T ss_pred             CccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCC
Confidence            4578899999999999999998887777777777777789999999999999999853   344455554 589999999


Q ss_pred             CChHHHHHHHHHHh---CCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHH
Q psy16204        258 TGKTMLAKAVATEC---GTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQI  334 (577)
Q Consensus       258 tGKT~LAkaLA~el---~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (577)
                      ||||+||++||+.+   +.++++++++++.+.+.                            +..+.|++++|+|+.   
T Consensus       550 vGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~----------------------------~~~l~g~~~gyvg~~---  598 (821)
T CHL00095        550 VGKTELTKALASYFFGSEDAMIRLDMSEYMEKHT----------------------------VSKLIGSPPGYVGYN---  598 (821)
T ss_pred             CcHHHHHHHHHHHhcCCccceEEEEchhcccccc----------------------------HHHhcCCCCcccCcC---
Confidence            99999999999997   36899999988755321                            122345666666661   


Q ss_pred             HHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhc
Q psy16204        335 LQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCY  414 (577)
Q Consensus       335 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~  414 (577)
                                                                                       .++.+.+.   ++.+
T Consensus       599 -----------------------------------------------------------------~~~~l~~~---~~~~  610 (821)
T CHL00095        599 -----------------------------------------------------------------EGGQLTEA---VRKK  610 (821)
T ss_pred             -----------------------------------------------------------------ccchHHHH---HHhC
Confidence                                                                             11222222   4555


Q ss_pred             CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC-----CCcCCCceEEEEEecCCchhhHH
Q psy16204        415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHPYQLLT  478 (577)
Q Consensus       415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~-----~~~~~~~~VlIIatTN~p~~L~~  478 (577)
                      ..+||||||||++++            .+++.||+.||.-.     +...+.++.+||+|||....+..
T Consensus       611 p~~VvllDeieka~~------------~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~  667 (821)
T CHL00095        611 PYTVVLFDEIEKAHP------------DIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIE  667 (821)
T ss_pred             CCeEEEECChhhCCH------------HHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHH
Confidence            669999999999976            68999999998521     22345578999999998776544

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.67  E-value=3.1e-16  Score=178.14  Aligned_cols=235  Identities=24%  Similarity=0.245  Sum_probs=176.7

Q ss_pred             cCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcc---cCC
Q psy16204        320 LNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTC---QSH  396 (577)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  396 (577)
                      .+..++++.|....+.++++.+..+-.++......+..+|.+++.|+++|+||+.............+......   ..+
T Consensus       173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~  252 (733)
T TIGR01243       173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY  252 (733)
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence            45667778888888889988887776777777788899999999999999999987544333322223222211   234


Q ss_pred             CCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhh
Q psy16204        397 EGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQL  476 (577)
Q Consensus       397 ~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L  476 (577)
                      .|+....++..|..+..+.|+||||||||.++..++.. ..+...++++.|+..|+++...    ..|+||+|||+++.|
T Consensus       253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~-~~~~~~~~~~~Ll~~ld~l~~~----~~vivI~atn~~~~l  327 (733)
T TIGR01243       253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV-TGEVEKRVVAQLLTLMDGLKGR----GRVIVIGATNRPDAL  327 (733)
T ss_pred             ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC-cchHHHHHHHHHHHHhhccccC----CCEEEEeecCChhhc
Confidence            67788889999999999999999999999999877543 2344568899999999988643    569999999999999


Q ss_pred             HHHhhcCccc---------------------------ccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChh
Q psy16204        477 LTLCLEGVVI---------------------------DVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPA  529 (577)
Q Consensus       477 ~~allrr~~i---------------------------~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~  529 (577)
                      ++++.+..++                           ..++++..+++.++||+++||..+|++|++.++++.......+
T Consensus       328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~  407 (733)
T TIGR01243       328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKIN  407 (733)
T ss_pred             CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            8888774332                           2245789999999999999999999999999999876421110


Q ss_pred             -HHhhhhc-cCCCCCCCHHHHHHHHHHhCCCC
Q psy16204        530 -QIKEIKQ-EDIDLPVTEKDFREAIARCRKSV  559 (577)
Q Consensus       530 -~~~~~~~-~~~~~~It~~df~~Al~~~~psv  559 (577)
                       ....+.. ......++.+||..|+..++|+.
T Consensus       408 ~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~  439 (733)
T TIGR01243       408 FEAEEIPAEVLKELKVTMKDFMEALKMVEPSA  439 (733)
T ss_pred             cccccccchhcccccccHHHHHHHHhhccccc
Confidence             0111111 11235699999999999998875

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.65  E-value=1.8e-15  Score=162.38  Aligned_cols=80  Identities=29%  Similarity=0.300  Sum_probs=61.2

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCc----------c-ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-ccc
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMP----------E-FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYR  288 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~----------~-~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~~  288 (577)
                      +.|+||+.+++.|..++..+..+.          . ...++||+||||||||++|++||+.++.+|+.++++.+.. .|+
T Consensus        71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyv  150 (412)
T PRK05342         71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYV  150 (412)
T ss_pred             hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcc
Confidence            349999999999988774321111          1 1257999999999999999999999999999999998875 688


Q ss_pred             cchH-HHHHHHHH
Q psy16204        289 GESE-KLVRLLFE  300 (577)
Q Consensus       289 G~~e-~~vr~lF~  300 (577)
                      |.+. ..+..++.
T Consensus       151 G~d~e~~l~~l~~  163 (412)
T PRK05342        151 GEDVENILLKLLQ  163 (412)
T ss_pred             cchHHHHHHHHHH
Confidence            8763 33444443

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.64  E-value=1.1e-14  Score=148.61  Aligned_cols=81  Identities=20%  Similarity=0.215  Sum_probs=62.6

Q ss_pred             ccccCcHHHHHHHHHHHHCc----------CCCccccceeEEecCCCCChHHHHHHHHHHhC-------CeEEEEecCcc
Q psy16204        221 NKVAGLTEAKAILQEAMVLP----------TIMPEFFKEALERHSHGTGKTMLAKAVATECG-------TTFFNVSSSTL  283 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~p----------l~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~-------~~fv~v~~s~l  283 (577)
                      .+++|++++|+.|.+.+.+.          +.......++||+||||||||++|+++|+.+.       .+|+.++++++
T Consensus        22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l  101 (284)
T TIGR02880        22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL  101 (284)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence            46899999999998876541          11111123799999999999999999998873       37999999988


Q ss_pred             ccccccchHHHHHHHHHH
Q psy16204        284 TSKYRGESEKLVRLLFEM  301 (577)
Q Consensus       284 ~~k~~G~~e~~vr~lF~~  301 (577)
                      ...|.|.++..++.+|+.
T Consensus       102 ~~~~~g~~~~~~~~~~~~  119 (284)
T TIGR02880       102 VGQYIGHTAPKTKEILKR  119 (284)
T ss_pred             hHhhcccchHHHHHHHHH
Confidence            888888877777666654

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.62  E-value=1.2e-14  Score=165.45  Aligned_cols=236  Identities=16%  Similarity=0.199  Sum_probs=154.2

Q ss_pred             hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEE
Q psy16204        209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNV  278 (577)
Q Consensus       209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v  278 (577)
                      .+..+...+-.++.++|+++.++.+.+.+...     ...++||+||||||||++|++||+.+          +..++.+
T Consensus       170 ~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~-----~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~  244 (731)
T TIGR02639       170 VDLTEKAKNGKIDPLIGREDELERTIQVLCRR-----KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL  244 (731)
T ss_pred             hhHHHHHhcCCCCcccCcHHHHHHHHHHHhcC-----CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence            34444455667899999999999988877443     23589999999999999999999997          7789999


Q ss_pred             ecCccc--cccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCccccccc
Q psy16204        279 SSSTLT--SKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQ  356 (577)
Q Consensus       279 ~~s~l~--~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  356 (577)
                      +++.+.  .+|.|+.+..++.+|+.                                                       
T Consensus       245 ~~~~l~a~~~~~g~~e~~l~~i~~~-------------------------------------------------------  269 (731)
T TIGR02639       245 DMGSLLAGTKYRGDFEERLKAVVSE-------------------------------------------------------  269 (731)
T ss_pred             cHHHHhhhccccchHHHHHHHHHHH-------------------------------------------------------
Confidence            998887  47889999999888876                                                       


Q ss_pred             CCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCCh
Q psy16204        357 ESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSE  436 (577)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~  436 (577)
                                                                            +..+.++||||||||.|+......+.
T Consensus       270 ------------------------------------------------------~~~~~~~ILfiDEih~l~~~g~~~~~  295 (731)
T TIGR02639       270 ------------------------------------------------------IEKEPNAILFIDEIHTIVGAGATSGG  295 (731)
T ss_pred             ------------------------------------------------------HhccCCeEEEEecHHHHhccCCCCCc
Confidence                                                                  55566899999999999875422111


Q ss_pred             hHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCch-----hhHHHhhcCccccccc---CHHH-------HHHHcC-
Q psy16204        437 HEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPY-----QLLTLCLEGVVIDVNL---DFHK-------ISKMLE-  500 (577)
Q Consensus       437 ~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~-----~L~~allrr~~i~~~v---dl~~-------LA~~t~-  500 (577)
                         ...+.+.|+..+..        ..+.+|+|||..+     .+++++.+||... .+   +.+.       +....+ 
T Consensus       296 ---~~~~~~~L~~~l~~--------g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i-~v~~p~~~~~~~il~~~~~~~e~  363 (731)
T TIGR02639       296 ---SMDASNLLKPALSS--------GKLRCIGSTTYEEYKNHFEKDRALSRRFQKI-DVGEPSIEETVKILKGLKEKYEE  363 (731)
T ss_pred             ---cHHHHHHHHHHHhC--------CCeEEEEecCHHHHHHHhhhhHHHHHhCceE-EeCCCCHHHHHHHHHHHHHHHHh
Confidence               11234555555542        4488899988643     4799999988642 22   2221       222211 


Q ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHHhcCChh-HHhhhh---------cc-CCCCCCCHHHHHHHHHHhC--C--CCCH
Q psy16204        501 ----GYTGSDIANLARDAAMMSIRRKIMGQTPA-QIKEIK---------QE-DIDLPVTEKDFREAIARCR--K--SVTA  561 (577)
Q Consensus       501 ----G~sgsDI~~l~~~Aa~~airr~~~~~~~~-~~~~~~---------~~-~~~~~It~~df~~Al~~~~--p--sv~~  561 (577)
                          .++...|..++.-+....-.|.    .|+ .+.-++         .. .....|+.+|+..+++...  |  .++.
T Consensus       364 ~~~v~i~~~al~~~~~ls~ryi~~r~----~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~  439 (731)
T TIGR02639       364 FHHVKYSDEALEAAVELSARYINDRF----LPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIPVKTVSV  439 (731)
T ss_pred             ccCcccCHHHHHHHHHhhhccccccc----CCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCChhhhhh
Confidence                2566666666654433211111    111 111110         00 1124599999999999874  2  3456


Q ss_pred             HHHHHHHHHHHhh
Q psy16204        562 HDLSKYDSWMNEF  574 (577)
Q Consensus       562 ~~~~~~~~~~~~~  574 (577)
                      .+..++....+.+
T Consensus       440 ~~~~~l~~l~~~l  452 (731)
T TIGR02639       440 DDREKLKNLEKNL  452 (731)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666776655544

>KOG0742|consensus

Probab=99.62  E-value=1e-14  Score=155.13  Aligned_cols=180  Identities=24%  Similarity=0.306  Sum_probs=134.2

Q ss_pred             CCCcccccCcHHHHHHHHHHH---HCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccc-hH
Q psy16204        217 NVQWNKVAGLTEAKAILQEAM---VLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGE-SE  292 (577)
Q Consensus       217 ~v~~~dIiG~~~ak~~L~e~l---~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~-~e  292 (577)
                      +.-+++||-.-....+|.+..   ..-..+..+|++||||||||||||+.||.||...|..+-.+.+.++.-  .|. .-
T Consensus       351 k~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP--lG~qaV  428 (630)
T KOG0742|consen  351 KDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP--LGAQAV  428 (630)
T ss_pred             CCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc--cchHHH
Confidence            345888888777777776654   345556677899999999999999999999999999988888877632  232 24


Q ss_pred             HHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCC
Q psy16204        293 KLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGK  372 (577)
Q Consensus       293 ~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (577)
                      ..++++|++|                                                                      
T Consensus       429 TkiH~lFDWa----------------------------------------------------------------------  438 (630)
T KOG0742|consen  429 TKIHKLFDWA----------------------------------------------------------------------  438 (630)
T ss_pred             HHHHHHHHHH----------------------------------------------------------------------
Confidence            5577777762                                                                      


Q ss_pred             CCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHh
Q psy16204        373 GPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMD  452 (577)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD  452 (577)
                                      +|.                      +..-+|||||.|.+...|.....++..+..+|.||--- 
T Consensus       439 ----------------kkS----------------------~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRT-  479 (630)
T KOG0742|consen  439 ----------------KKS----------------------RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT-  479 (630)
T ss_pred             ----------------hhc----------------------ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHh-
Confidence                            111                      22359999999999999999888999999999998432 


Q ss_pred             CCCCCcCCCceEEEEEecCCchhhHHHhhcCcccccc-------------------------------------------
Q psy16204        453 GLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVN-------------------------------------------  489 (577)
Q Consensus       453 ~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~-------------------------------------------  489 (577)
                      |..     .+.++++.+||+|.++|.++-+|+.-..+                                           
T Consensus       480 Gdq-----SrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~  554 (630)
T KOG0742|consen  480 GDQ-----SRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQR  554 (630)
T ss_pred             ccc-----ccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhhe
Confidence            222     25588899999999987777766411000                                           


Q ss_pred             c---------CHHHHHHHcCCCCHHHHHHHHH
Q psy16204        490 L---------DFHKISKMLEGYTGSDIANLAR  512 (577)
Q Consensus       490 v---------dl~~LA~~t~G~sgsDI~~l~~  512 (577)
                      |         -+.+.|+.|+||||.+|..|+-
T Consensus       555 i~l~~~~t~~~~~EaAkkTeGfSGREiakLva  586 (630)
T KOG0742|consen  555 IKLAGFDTGRKCSEAAKKTEGFSGREIAKLVA  586 (630)
T ss_pred             eeeccchHHHHHHHHHHhccCCcHHHHHHHHH
Confidence            0         1367889999999999999974

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.62  E-value=9.2e-15  Score=149.95  Aligned_cols=165  Identities=22%  Similarity=0.256  Sum_probs=125.4

Q ss_pred             hcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchH
Q psy16204        213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESE  292 (577)
Q Consensus       213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e  292 (577)
                      ....+..|++.+||+++|++|.-++.....+.+.+.++|||||||.|||+||..||+|+|..+...++.-+- +      
T Consensus        18 ~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le-K------   90 (332)
T COG2255          18 RSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE-K------   90 (332)
T ss_pred             cccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc-C------
Confidence            345577899999999999999999998888889999999999999999999999999999998777776441 1      


Q ss_pred             HHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCC
Q psy16204        293 KLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGK  372 (577)
Q Consensus       293 ~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (577)
                                                                                                      
T Consensus        91 --------------------------------------------------------------------------------   90 (332)
T COG2255          91 --------------------------------------------------------------------------------   90 (332)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHh
Q psy16204        373 GPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMD  452 (577)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD  452 (577)
                       +.+++++++.                             -...+|+|||||+.+.+            .+-..|...|+
T Consensus        91 -~gDlaaiLt~-----------------------------Le~~DVLFIDEIHrl~~------------~vEE~LYpaME  128 (332)
T COG2255          91 -PGDLAAILTN-----------------------------LEEGDVLFIDEIHRLSP------------AVEEVLYPAME  128 (332)
T ss_pred             -hhhHHHHHhc-----------------------------CCcCCeEEEehhhhcCh------------hHHHHhhhhhh
Confidence             1122222221                             12237999999999977            23344556666


Q ss_pred             CCCC----------Cc--CCCceEEEEEecCCchhhHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHHH
Q psy16204        453 GLNS----------SL--YEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAA  515 (577)
Q Consensus       453 ~~~~----------~~--~~~~~VlIIatTN~p~~L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa  515 (577)
                      .+.-          ..  .+-.+.-+|+||.+...|-..|..||.+...+++         |+..||+.++.+++
T Consensus       129 Df~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlef---------Y~~~eL~~Iv~r~a  194 (332)
T COG2255         129 DFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEF---------YTVEELEEIVKRSA  194 (332)
T ss_pred             heeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeec---------CCHHHHHHHHHHHH
Confidence            4321          11  2345678999999999999999999998777766         88888888877654

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.62  E-value=1.1e-14  Score=168.41  Aligned_cols=182  Identities=24%  Similarity=0.215  Sum_probs=135.9

Q ss_pred             CCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCc---CCCcccc-ceeEEecCCCC
Q psy16204        183 GVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLP---TIMPEFF-KEALERHSHGT  258 (577)
Q Consensus       183 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~p---l~~~~~~-k~ILL~GPpGt  258 (577)
                      .+..+++...+...+|+|...+...+...+.+......+.|+||+.+++.|.+++...   +..+..+ ..+||+||+||
T Consensus       527 ~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~Gv  606 (852)
T TIGR03346       527 EVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGV  606 (852)
T ss_pred             CcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCC
Confidence            4778999999999999999887777777777776677889999999999999999653   3344444 45899999999


Q ss_pred             ChHHHHHHHHHHh---CCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHH
Q psy16204        259 GKTMLAKAVATEC---GTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQIL  335 (577)
Q Consensus       259 GKT~LAkaLA~el---~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (577)
                      |||++|++||+.+   +.+|++++++++.+.+.                            +..+.|++++|+|+..   
T Consensus       607 GKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~----------------------------~~~l~g~~~g~~g~~~---  655 (852)
T TIGR03346       607 GKTELAKALAEFLFDDEDAMVRIDMSEYMEKHS----------------------------VARLIGAPPGYVGYEE---  655 (852)
T ss_pred             CHHHHHHHHHHHhcCCCCcEEEEechhhcccch----------------------------HHHhcCCCCCccCccc---
Confidence            9999999999987   46899999998754321                            2234466777777611   


Q ss_pred             HHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcC
Q psy16204        336 QMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYA  415 (577)
Q Consensus       336 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~  415 (577)
                                                                                       ++.+.+.   .+...
T Consensus       656 -----------------------------------------------------------------~g~l~~~---v~~~p  667 (852)
T TIGR03346       656 -----------------------------------------------------------------GGQLTEA---VRRKP  667 (852)
T ss_pred             -----------------------------------------------------------------ccHHHHH---HHcCC
Confidence                                                                             1122222   34455


Q ss_pred             CeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC-----CCcCCCceEEEEEecCCchh
Q psy16204        416 PSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHPYQ  475 (577)
Q Consensus       416 p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~-----~~~~~~~~VlIIatTN~p~~  475 (577)
                      .+||||||||++++            .+++.||+.++.-.     +...+..+.+||+|||....
T Consensus       668 ~~vlllDeieka~~------------~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~  720 (852)
T TIGR03346       668 YSVVLFDEVEKAHP------------DVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQ  720 (852)
T ss_pred             CcEEEEeccccCCH------------HHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchH
Confidence            68999999999976            77999999997421     22234578999999998554

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>KOG0735|consensus

Probab=99.61  E-value=1.3e-14  Score=161.68  Aligned_cols=210  Identities=20%  Similarity=0.207  Sum_probs=147.4

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC----CeEEEEecCccccccccchHHHHH
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG----TTFFNVSSSTLTSKYRGESEKLVR  296 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~----~~fv~v~~s~l~~k~~G~~e~~vr  296 (577)
                      .+++-...+|+...+....|..++   .+|||+||+|+|||.||+++++++.    +.+..++|+.+-.+.....     
T Consensus       408 ~d~i~~~s~kke~~n~~~spv~~~---~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~i-----  479 (952)
T KOG0735|consen  408 HDFIQVPSYKKENANQELSPVFRH---GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKI-----  479 (952)
T ss_pred             Cceeecchhhhhhhhhhccccccc---ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHH-----
Confidence            466777777777776665553332   6899999999999999999999986    6788899998744322111     


Q ss_pred             HHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcc
Q psy16204        297 LLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWS  376 (577)
Q Consensus       297 ~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (577)
                                                                                                      
T Consensus       480 --------------------------------------------------------------------------------  479 (952)
T KOG0735|consen  480 --------------------------------------------------------------------------------  479 (952)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCC-CCChhHHHHHHHHHHH-HHHhCC
Q psy16204        377 MVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRG-SDSEHEASRRFKAELL-IQMDGL  454 (577)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~-~~~~~~~~~~v~~~LL-~~mD~~  454 (577)
                                              .+.+.++|.++.+++|+||++|++|.|++..+ .++++......++.+| +.++.+
T Consensus       480 ------------------------Qk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y  535 (952)
T KOG0735|consen  480 ------------------------QKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIY  535 (952)
T ss_pred             ------------------------HHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHH
Confidence                                    22345566669999999999999999998432 2233333333444455 555554


Q ss_pred             CCCcCCCceEEEEEecCCchhhHHHhhcCccccc----------------------------ccCHHHHHHHcCCCCHHH
Q psy16204        455 NSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV----------------------------NLDFHKISKMLEGYTGSD  506 (577)
Q Consensus       455 ~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~----------------------------~vdl~~LA~~t~G~sgsD  506 (577)
                      ..   .+..+.+||+.+....|.+.|.....++.                            .-|++-++..|+||...|
T Consensus       536 ~~---~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~D  612 (952)
T KOG0735|consen  536 LK---RNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATD  612 (952)
T ss_pred             Hc---cCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchh
Confidence            43   23568999998877775555444332211                            115566999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCC
Q psy16204        507 IANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS  558 (577)
Q Consensus       507 I~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ps  558 (577)
                      +..++.+|...++++.+..             ....+|.++|.++|..+.|.
T Consensus       613 L~ifVeRai~~a~leris~-------------~~klltke~f~ksL~~F~P~  651 (952)
T KOG0735|consen  613 LVIFVERAIHEAFLERISN-------------GPKLLTKELFEKSLKDFVPL  651 (952)
T ss_pred             HHHHHHHHHHHHHHHHhcc-------------CcccchHHHHHHHHHhcChH
Confidence            9999999999998665421             12369999999999998764

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.61  E-value=3.8e-14  Score=146.38  Aligned_cols=71  Identities=23%  Similarity=0.188  Sum_probs=58.9

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      +...+.+.+|++++|+++.++.|..++.........+.++|||||||||||++|+++|++++..+..+++.
T Consensus        15 ~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~   85 (328)
T PRK00080         15 IERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGP   85 (328)
T ss_pred             hhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecc
Confidence            34566778999999999999999998865433345567899999999999999999999999888776654

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.59  E-value=2.3e-14  Score=144.97  Aligned_cols=63  Identities=25%  Similarity=0.243  Sum_probs=53.7

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      +|++++|++++++.|..++......+..+.+++|+||||||||+||+++|++++..+..+.+.
T Consensus         2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~   64 (305)
T TIGR00635         2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGP   64 (305)
T ss_pred             CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccc
Confidence            689999999999999999865554555567899999999999999999999999887666544

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.59  E-value=7.4e-15  Score=168.47  Aligned_cols=180  Identities=18%  Similarity=0.216  Sum_probs=120.5

Q ss_pred             CCCcccccCcHHHHHHHHHHHHCcCCCcc-ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchHHHH
Q psy16204        217 NVQWNKVAGLTEAKAILQEAMVLPTIMPE-FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLV  295 (577)
Q Consensus       217 ~v~~~dIiG~~~ak~~L~e~l~~pl~~~~-~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~v  295 (577)
                      .+.-+++.|++.+|+++.+++.......+ ....++|+||||||||++++.+|+.++.+|+.++++...+.      ..+
T Consensus       318 ~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~------~~i  391 (784)
T PRK10787        318 EILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDE------AEI  391 (784)
T ss_pred             HHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCH------HHh
Confidence            34556899999999999998865333222 22468999999999999999999999999999997754321      111


Q ss_pred             HHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCc
Q psy16204        296 RLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPW  375 (577)
Q Consensus       296 r~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (577)
                      +                                                               ++...|          
T Consensus       392 ~---------------------------------------------------------------g~~~~~----------  398 (784)
T PRK10787        392 R---------------------------------------------------------------GHRRTY----------  398 (784)
T ss_pred             c---------------------------------------------------------------cchhcc----------
Confidence            0                                                               001111          


Q ss_pred             chhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC
Q psy16204        376 SMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN  455 (577)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~  455 (577)
                                           +|.+.+.+...+..+.... .||||||||++.....++        ..+.||+.+|.-.
T Consensus       399 ---------------------~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~g~--------~~~aLlevld~~~  448 (784)
T PRK10787        399 ---------------------IGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMRGD--------PASALLEVLDPEQ  448 (784)
T ss_pred             ---------------------CCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccCCC--------HHHHHHHHhcccc
Confidence                                 1222222222222233233 489999999998753322        3678999888532


Q ss_pred             CCc---------CCCceEEEEEecCCchhhHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy16204        456 SSL---------YEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAM  516 (577)
Q Consensus       456 ~~~---------~~~~~VlIIatTN~p~~L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~  516 (577)
                      +..         ++..+|++|||+|.. .|.++++.|+.+   +.       ..+|+..++..+++....
T Consensus       449 ~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~i---i~-------~~~~t~eek~~Ia~~~L~  507 (784)
T PRK10787        449 NVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEV---IR-------LSGYTEDEKLNIAKRHLL  507 (784)
T ss_pred             EEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceee---ee-------cCCCCHHHHHHHHHHhhh
Confidence            211         344789999999987 599999999975   22       377888888888777654

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=99.59  E-value=1.6e-14  Score=155.28  Aligned_cols=149  Identities=21%  Similarity=0.275  Sum_probs=104.8

Q ss_pred             CcccccCcHHHHHHHHHHHHC---cCCC-------cc--c-cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        219 QWNKVAGLTEAKAILQEAMVL---PTIM-------PE--F-FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~---pl~~-------~~--~-~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      .-+.|+||++++..|..++..   .+..       +.  . ..++||+||||||||++|++||+.++.+|..+++..+..
T Consensus        75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~  154 (413)
T TIGR00382        75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTE  154 (413)
T ss_pred             hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccc
Confidence            345689999999999887732   1111       10  1 257999999999999999999999999999999988764


Q ss_pred             -ccccch-HHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccc
Q psy16204        286 -KYRGES-EKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIF  363 (577)
Q Consensus       286 -k~~G~~-e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  363 (577)
                       +|+|.+ +..+..++..+.                                                            
T Consensus       155 ~gyvG~d~e~~L~~~~~~~~------------------------------------------------------------  174 (413)
T TIGR00382       155 AGYVGEDVENILLKLLQAAD------------------------------------------------------------  174 (413)
T ss_pred             cccccccHHHHHHHHHHhCc------------------------------------------------------------
Confidence             688875 343444433200                                                            


Q ss_pred             cccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHHHH
Q psy16204        364 SVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEASR  441 (577)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~~~  441 (577)
                                                                   .......++||||||||+++..+...  ..+....
T Consensus       175 ---------------------------------------------~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~  209 (413)
T TIGR00382       175 ---------------------------------------------YDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGE  209 (413)
T ss_pred             ---------------------------------------------ccHHhcccceEEecccchhchhhccccccccccch
Confidence                                                         00344567899999999999854321  1233344


Q ss_pred             HHHHHHHHHHhCCCC-------CcCCCceEEEEEecCC
Q psy16204        442 RFKAELLIQMDGLNS-------SLYEDKIIMILAATNH  472 (577)
Q Consensus       442 ~v~~~LL~~mD~~~~-------~~~~~~~VlIIatTN~  472 (577)
                      .+++.||+.|+|...       ......+.++|+|+|-
T Consensus       210 ~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNi  247 (413)
T TIGR00382       210 GVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNI  247 (413)
T ss_pred             hHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCc
Confidence            789999999987432       2234567899999996

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>KOG0743|consensus

Probab=99.58  E-value=1.4e-14  Score=155.67  Aligned_cols=167  Identities=20%  Similarity=0.236  Sum_probs=123.2

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccccc
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRG  289 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G  289 (577)
                      -+++-++-..+.|+.|.+-+..-+.+++.+        +|.|||||||||||++.-|+|+.++..++.++.++...    
T Consensus       198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~----  273 (457)
T KOG0743|consen  198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL----  273 (457)
T ss_pred             CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence            578888888888888888776555554444        68999999999999999999999999999888876522    


Q ss_pred             chHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccC
Q psy16204        290 ESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDG  369 (577)
Q Consensus       290 ~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  369 (577)
                       +.. ++.|.-.                                                                    
T Consensus       274 -n~d-Lr~LL~~--------------------------------------------------------------------  283 (457)
T KOG0743|consen  274 -DSD-LRHLLLA--------------------------------------------------------------------  283 (457)
T ss_pred             -cHH-HHHHHHh--------------------------------------------------------------------
Confidence             212 4443321                                                                    


Q ss_pred             CCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCCh-----h-HHHHHH
Q psy16204        370 LGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSE-----H-EASRRF  443 (577)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~-----~-~~~~~v  443 (577)
                                                                 ....+||+|.+||+-...++....     + ....-.
T Consensus       284 -------------------------------------------t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VT  320 (457)
T KOG0743|consen  284 -------------------------------------------TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVT  320 (457)
T ss_pred             -------------------------------------------CCCCcEEEEeecccccccccccccccccccCCcceee
Confidence                                                       123479999999988765532221     1 112235


Q ss_pred             HHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccccc--------CHHHHHHHcCCCC
Q psy16204        444 KAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL--------DFHKISKMLEGYT  503 (577)
Q Consensus       444 ~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~v--------dl~~LA~~t~G~s  503 (577)
                      ++-||..+||+.+...  +--+||+|||+++.||+||+|+++++..+        .|..||...-|..
T Consensus       321 lSGLLNfiDGlwSscg--~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~  386 (457)
T KOG0743|consen  321 LSGLLNFLDGLWSSCG--DERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIE  386 (457)
T ss_pred             hHHhhhhhccccccCC--CceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCC
Confidence            7789999999998632  34689999999999999999999988665        4677777776664

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.57  E-value=2.8e-14  Score=165.19  Aligned_cols=183  Identities=23%  Similarity=0.211  Sum_probs=133.9

Q ss_pred             CCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCc---CCCcccc-ceeEEecCCCC
Q psy16204        183 GVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLP---TIMPEFF-KEALERHSHGT  258 (577)
Q Consensus       183 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~p---l~~~~~~-k~ILL~GPpGt  258 (577)
                      .+..+++...++..+|+|...+...+...+.+......+.|+|++.+++.|...+...   +..+..+ ..+||+||+||
T Consensus       530 ~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~  609 (857)
T PRK10865        530 KVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGV  609 (857)
T ss_pred             ccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCC
Confidence            3678889999999999999987777777777777788899999999999999998642   3344444 36899999999


Q ss_pred             ChHHHHHHHHHHh---CCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHH
Q psy16204        259 GKTMLAKAVATEC---GTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQIL  335 (577)
Q Consensus       259 GKT~LAkaLA~el---~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (577)
                      |||++|++||+.+   +.+|+.++|+++.+.+      .+                      ..+.|++++|+|+..   
T Consensus       610 GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~------~~----------------------~~LiG~~pgy~g~~~---  658 (857)
T PRK10865        610 GKTELCKALANFMFDSDDAMVRIDMSEFMEKH------SV----------------------SRLVGAPPGYVGYEE---  658 (857)
T ss_pred             CHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhh------hH----------------------HHHhCCCCcccccch---
Confidence            9999999999987   4579999998764321      11                      123355666666521   


Q ss_pred             HHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcC
Q psy16204        336 QMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYA  415 (577)
Q Consensus       336 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~  415 (577)
                                                                                       ++.+.+.   .+...
T Consensus       659 -----------------------------------------------------------------~g~l~~~---v~~~p  670 (857)
T PRK10865        659 -----------------------------------------------------------------GGYLTEA---VRRRP  670 (857)
T ss_pred             -----------------------------------------------------------------hHHHHHH---HHhCC
Confidence                                                                             1122222   33445


Q ss_pred             CeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCC-----CCCcCCCceEEEEEecCCchhh
Q psy16204        416 PSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGL-----NSSLYEDKIIMILAATNHPYQL  476 (577)
Q Consensus       416 p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~-----~~~~~~~~~VlIIatTN~p~~L  476 (577)
                      .+|||||||+++.+            .+++.|++.++.-     .+...+..+.+||+|||.....
T Consensus       671 ~~vLllDEieka~~------------~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~  724 (857)
T PRK10865        671 YSVILLDEVEKAHP------------DVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDL  724 (857)
T ss_pred             CCeEEEeehhhCCH------------HHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHH
Confidence            58999999999876            6789999998742     1222455778999999986443

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=9.2e-14  Score=150.73  Aligned_cols=185  Identities=39%  Similarity=0.522  Sum_probs=158.0

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCc
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTT  326 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~  326 (577)
                      +++++++||||+|||++++++|.+ +..++.+++.....+|.|.++..++.+|+.                         
T Consensus        18 ~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------   71 (494)
T COG0464          18 PKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEE-------------------------   71 (494)
T ss_pred             CCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHH-------------------------
Confidence            478999999999999999999999 777788999999999999999999999987                         


Q ss_pred             cchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhh
Q psy16204        327 TFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKN  406 (577)
Q Consensus       327 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  406 (577)
                                                                                                      
T Consensus        72 --------------------------------------------------------------------------------   71 (494)
T COG0464          72 --------------------------------------------------------------------------------   71 (494)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc
Q psy16204        407 SLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI  486 (577)
Q Consensus       407 ~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i  486 (577)
                          ++.+.|+++++||+|.+++.+.. ......+++.+.|+..++++.    ... ++++++||.+..++.++.+...+
T Consensus        72 ----a~~~~~~ii~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~----~~~-v~~~~~~~~~~~~~~a~~~~~~~  141 (494)
T COG0464          72 ----AEKLAPSIIFIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK----RGQ-VIVIGATNRPDGLDPAKRRPGRF  141 (494)
T ss_pred             ----HHHhCCCeEeechhhhcccCccc-cccchhhHHHHHHHHhccccc----CCc-eEEEeecCCccccChhHhCcccc
Confidence                77888899999999999999877 556677899999999999998    335 99999999999988888876544


Q ss_pred             cc---------------------------ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCC
Q psy16204        487 DV---------------------------NLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDI  539 (577)
Q Consensus       487 ~~---------------------------~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~  539 (577)
                      +.                           +.++..++..+.||+++|+..++.++.+.++++..           .....
T Consensus       142 ~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----------~~~~~  210 (494)
T COG0464         142 DREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----------DLVGE  210 (494)
T ss_pred             ceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----------ccCcc
Confidence            43                           33678999999999999999999999999999963           00112


Q ss_pred             CCCCCHHHHHHHHHHhCCC
Q psy16204        540 DLPVTEKDFREAIARCRKS  558 (577)
Q Consensus       540 ~~~It~~df~~Al~~~~ps  558 (577)
                      ...++.+||.++++.+.|+
T Consensus       211 ~~~~~~~~~~~~l~~~~~~  229 (494)
T COG0464         211 YIGVTEDDFEEALKKVLPS  229 (494)
T ss_pred             cccccHHHHHHHHHhcCcc
Confidence            3469999999999998664

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=5.7e-14  Score=145.95  Aligned_cols=83  Identities=28%  Similarity=0.288  Sum_probs=64.1

Q ss_pred             CcccccCcHHHHHHHHHHHHCc---CCC------cccc-ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-cc
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLP---TIM------PEFF-KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KY  287 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~p---l~~------~~~~-k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~  287 (577)
                      .-+-|+||+.+|..|.-++-..   +..      -++. .+|||.||+|+|||.||+-||+-++.||..-++..|++ +|
T Consensus        59 Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGY  138 (408)
T COG1219          59 LDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGY  138 (408)
T ss_pred             hhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccc
Confidence            3456899999999886555221   111      1122 57999999999999999999999999999999999998 89


Q ss_pred             ccchH-HHHHHHHHH
Q psy16204        288 RGESE-KLVRLLFEM  301 (577)
Q Consensus       288 ~G~~e-~~vr~lF~~  301 (577)
                      +|++- ..+..+...
T Consensus       139 VGEDVENillkLlqa  153 (408)
T COG1219         139 VGEDVENILLKLLQA  153 (408)
T ss_pred             cchhHHHHHHHHHHH
Confidence            99994 445566654

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.51  E-value=2e-14  Score=152.68  Aligned_cols=134  Identities=19%  Similarity=0.155  Sum_probs=114.6

Q ss_pred             hhhhcCCCCCcccccCcHHHH---HHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204        210 DILQNNPNVQWNKVAGLTEAK---AILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK  286 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak---~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k  286 (577)
                      +......+.++++++||+...   ..|.+++..     ....+++||||||||||+||+.||...++.|..+++-.-   
T Consensus        13 PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-----~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~---   84 (436)
T COG2256          13 PLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEA-----GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS---   84 (436)
T ss_pred             ChHHHhCCCCHHHhcChHhhhCCCchHHHHHhc-----CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc---
Confidence            344456678899999999876   345555532     223589999999999999999999999999999998643   


Q ss_pred             cccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCccccccc
Q psy16204        287 YRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQ  356 (577)
Q Consensus       287 ~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  356 (577)
                          .-+-+|++|+.|....+. +++|||||++++++..+-++...+..|-+..++.|++|++|++..|.
T Consensus        85 ----gvkdlr~i~e~a~~~~~~-gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~  149 (436)
T COG2256          85 ----GVKDLREIIEEARKNRLL-GRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNP  149 (436)
T ss_pred             ----cHHHHHHHHHHHHHHHhc-CCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecH
Confidence                347899999999888777 99999999999999999999999999999999999999999999977

>KOG2028|consensus

Probab=99.51  E-value=6e-14  Score=147.83  Aligned_cols=131  Identities=19%  Similarity=0.181  Sum_probs=107.4

Q ss_pred             cCCCCCcccccCcHHHHHH---HHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe---EEEEecCcccccc
Q psy16204        214 NNPNVQWNKVAGLTEAKAI---LQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT---FFNVSSSTLTSKY  287 (577)
Q Consensus       214 ~~~~v~~~dIiG~~~ak~~---L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~---fv~v~~s~l~~k~  287 (577)
                      ...+..++|.+||+.....   |+.++.     .....+++||||||||||+|||.|+.....+   |+.+++..-    
T Consensus       131 rmRPktL~dyvGQ~hlv~q~gllrs~ie-----q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a----  201 (554)
T KOG2028|consen  131 RMRPKTLDDYVGQSHLVGQDGLLRSLIE-----QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA----  201 (554)
T ss_pred             hcCcchHHHhcchhhhcCcchHHHHHHH-----cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc----
Confidence            4455667777777665543   333332     2233589999999999999999999998766   777776532    


Q ss_pred             ccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCccccccc
Q psy16204        288 RGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQ  356 (577)
Q Consensus       288 ~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  356 (577)
                         ..+-+|++|++|.+...+++++||||++++++|+..-++-..+..+-+-.+++|++|++|++..|.
T Consensus       202 ---~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~  267 (554)
T KOG2028|consen  202 ---KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNA  267 (554)
T ss_pred             ---chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhH
Confidence               346799999999999999999999999999999999999999999999999999999999999976

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.51  E-value=7.9e-13  Score=144.40  Aligned_cols=61  Identities=18%  Similarity=0.114  Sum_probs=52.5

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .+..++.+..|++|+||+.+...|..++...    .+...+||+||+|||||++|+++|+.+++.
T Consensus         7 ~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956          7 VLSRKYRPQFFRDVIHQDLAIGALQNALKSG----KIGHAYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             hhHHHhCCCCHHHHhChHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            4556788899999999999999999988543    345679999999999999999999998863

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.49  E-value=1.2e-12  Score=144.06  Aligned_cols=60  Identities=17%  Similarity=0.179  Sum_probs=52.3

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      +..++.+.+|++|+|++.+++.|..++..    ..++..+||+||+|||||++|+++|+.++|.
T Consensus         6 l~~kyRP~~f~divGq~~v~~~L~~~~~~----~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (509)
T PRK14958          6 LARKWRPRCFQEVIGQAPVVRALSNALDQ----QYLHHAYLFTGTRGVGKTTISRILAKCLNCE   65 (509)
T ss_pred             HHHHHCCCCHHHhcCCHHHHHHHHHHHHh----CCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            45678899999999999999999999854    3445678999999999999999999999864

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.48  E-value=1.2e-12  Score=142.82  Aligned_cols=59  Identities=19%  Similarity=0.269  Sum_probs=51.2

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      +..++.+.+|++|+|++.+++.|..++..+    .++.++|||||||||||++|+++|+.+++
T Consensus         4 l~~kyRP~~~~divGq~~i~~~L~~~i~~~----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962          4 LYRKYRPKTFSEVVGQDHVKKLIINALKKN----SISHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             hHHHHCCCCHHHccCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            446788899999999999999999887543    45567999999999999999999999875

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.48  E-value=1.4e-12  Score=146.61  Aligned_cols=59  Identities=17%  Similarity=0.235  Sum_probs=52.0

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      +..++.+.+|++|+|++.+++.|.+++...    ++...+||+||+|||||++|++||+.+.|
T Consensus         6 LarKYRPqtFddVIGQe~vv~~L~~al~~g----RLpHA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323          6 LARKWRPRDFTTLVGQEHVVRALTHALEQQ----RLHHAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             HHHHhCCCcHHHHcCcHHHHHHHHHHHHhC----CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            456788899999999999999999998543    45567899999999999999999999887

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.48  E-value=4.5e-13  Score=147.94  Aligned_cols=70  Identities=21%  Similarity=0.347  Sum_probs=58.0

Q ss_pred             HhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEE
Q psy16204        208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFN  277 (577)
Q Consensus       208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~  277 (577)
                      .+++.+.+.+..|++|+|++.+++.|..++..+     ...++||+||||||||++|+++++.+          +.+|+.
T Consensus        52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~-----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~  126 (531)
T TIGR02902        52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCGP-----NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE  126 (531)
T ss_pred             cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence            446777888899999999999999999876433     23589999999999999999998764          368999


Q ss_pred             EecCc
Q psy16204        278 VSSST  282 (577)
Q Consensus       278 v~~s~  282 (577)
                      ++|..
T Consensus       127 id~~~  131 (531)
T TIGR02902       127 IDATT  131 (531)
T ss_pred             Ecccc
Confidence            99874

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.48  E-value=2.2e-12  Score=145.20  Aligned_cols=60  Identities=18%  Similarity=0.251  Sum_probs=52.1

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      +..++.+..|++|+|++.+++.|..++..    ..+...+||+||+|||||++|+++|+.++|.
T Consensus         5 LarKyRPktFddVIGQe~vv~~L~~aI~~----grl~HAyLF~GPpGvGKTTlAriLAK~LnC~   64 (702)
T PRK14960          5 LARKYRPRNFNELVGQNHVSRALSSALER----GRLHHAYLFTGTRGVGKTTIARILAKCLNCE   64 (702)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            44577889999999999999999999853    3455789999999999999999999999873

>KOG1051|consensus

Probab=99.48  E-value=1.5e-13  Score=158.04  Aligned_cols=177  Identities=21%  Similarity=0.185  Sum_probs=139.5

Q ss_pred             ChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcC---CCccccceeEEecCCCCChH
Q psy16204        185 FRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPT---IMPEFFKEALERHSHGTGKT  261 (577)
Q Consensus       185 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl---~~~~~~k~ILL~GPpGtGKT  261 (577)
                      ...++.+.++..+|++.......+...+.......-+.|+||++|...|.++|....   .+++..-.+||.||.|||||
T Consensus       526 ~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt  605 (898)
T KOG1051|consen  526 GESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKT  605 (898)
T ss_pred             CccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHH
Confidence            566788899999999988887777777777777788999999999999999996643   33323346899999999999


Q ss_pred             HHHHHHHHHh---CCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHH
Q psy16204        262 MLAKAVATEC---GTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMN  338 (577)
Q Consensus       262 ~LAkaLA~el---~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (577)
                      .||++||..+   .-.|+.++++++.+                               |+.++++|++|.|+        
T Consensus       606 ~lAkaLA~~~Fgse~~~IriDmse~~e-------------------------------vskligsp~gyvG~--------  646 (898)
T KOG1051|consen  606 ELAKALAEYVFGSEENFIRLDMSEFQE-------------------------------VSKLIGSPPGYVGK--------  646 (898)
T ss_pred             HHHHHHHHHHcCCccceEEechhhhhh-------------------------------hhhccCCCcccccc--------
Confidence            9999999987   25788999987633                               35678899999998        


Q ss_pred             HHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeE
Q psy16204        339 RRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPST  418 (577)
Q Consensus       339 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~I  418 (577)
                                                                                  ++++.+.++   .+....+|
T Consensus       647 ------------------------------------------------------------e~gg~Ltea---vrrrP~sV  663 (898)
T KOG1051|consen  647 ------------------------------------------------------------EEGGQLTEA---VKRRPYSV  663 (898)
T ss_pred             ------------------------------------------------------------hhHHHHHHH---HhcCCceE
Confidence                                                                        233334444   56667799


Q ss_pred             EEEccccccccCCCCCChhHHHHHHHHHHHHHHhC-----CCCCcCCCceEEEEEecCCchh
Q psy16204        419 IFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG-----LNSSLYEDKIIMILAATNHPYQ  475 (577)
Q Consensus       419 IfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~-----~~~~~~~~~~VlIIatTN~p~~  475 (577)
                      |||||||+.++            .+++.|++.+|.     ..+...+.+|++||+|+|.-..
T Consensus       664 VLfdeIEkAh~------------~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~  713 (898)
T KOG1051|consen  664 VLFEEIEKAHP------------DVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSS  713 (898)
T ss_pred             EEEechhhcCH------------HHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchH
Confidence            99999999987            789999999985     2334467789999999887444

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.47  E-value=2e-12  Score=146.99  Aligned_cols=60  Identities=17%  Similarity=0.188  Sum_probs=52.1

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      +.++|.+.+|++|+|++.+++.|..++..    ..+...+||+||+|||||++|++||+.++|.
T Consensus         6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~----gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe   65 (830)
T PRK07003          6 LARKWRPKDFASLVGQEHVVRALTHALDG----GRLHHAYLFTGTRGVGKTTLSRIFAKALNCE   65 (830)
T ss_pred             HHHHhCCCcHHHHcCcHHHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            44678899999999999999999999853    3455678999999999999999999999864

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.46  E-value=2.5e-12  Score=148.20  Aligned_cols=61  Identities=18%  Similarity=0.230  Sum_probs=52.5

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .+..++.+.+|++|+|++.++..|+.++..    .++...+||+||||||||++||++|+.+++.
T Consensus         5 ~LaeKyRP~tFddIIGQe~Iv~~LknaI~~----~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949          5 VLARKWRPATFEQMVGQSHVLHALTNALTQ----QRLHHAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHh----CCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            345678889999999999999999998854    2455678999999999999999999998875

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.46  E-value=2.2e-12  Score=135.82  Aligned_cols=61  Identities=15%  Similarity=0.207  Sum_probs=52.5

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .+.+++.+.+|++|+|++.+++.|..++..    ..++..+||+||||+|||++|+++|+++.+.
T Consensus         5 ~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~----~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~   65 (363)
T PRK14961          5 ILARKWRPQYFRDIIGQKHIVTAISNGLSL----GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQ   65 (363)
T ss_pred             HHHHHhCCCchhhccChHHHHHHHHHHHHc----CCCCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence            345678889999999999999999998854    2455678999999999999999999998764

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.44  E-value=2.8e-12  Score=136.97  Aligned_cols=67  Identities=21%  Similarity=0.225  Sum_probs=56.5

Q ss_pred             hhhcCCCCCcccccCcHHHHHH---HHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAI---LQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~---L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      +.+.+.+.++++++|++.+...   |...+...     ...++||+||||||||++|++||+.++..|+.+++..
T Consensus         2 la~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~-----~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~   71 (413)
T PRK13342          2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAG-----RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT   71 (413)
T ss_pred             hhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcC-----CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence            4556778899999999999766   88887442     2358999999999999999999999999999998864

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.44  E-value=3.3e-12  Score=140.05  Aligned_cols=59  Identities=19%  Similarity=0.210  Sum_probs=51.2

Q ss_pred             hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      ..++.+.+|++|+||+.+++.|..++..    ..++.++||+||+|+|||++|+++|+.++|.
T Consensus         4 a~KyRP~~f~dliGQe~vv~~L~~a~~~----~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~   62 (491)
T PRK14964          4 ALKYRPSSFKDLVGQDVLVRILRNAFTL----NKIPQSILLVGASGVGKTTCARIISLCLNCS   62 (491)
T ss_pred             hHHhCCCCHHHhcCcHHHHHHHHHHHHc----CCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence            3577889999999999999999988854    3456789999999999999999999998763

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.44  E-value=3.4e-13  Score=128.87  Aligned_cols=60  Identities=15%  Similarity=0.267  Sum_probs=47.8

Q ss_pred             EEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC-----CCcCCCceEEEEEecCCchhhHH
Q psy16204        418 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHPYQLLT  478 (577)
Q Consensus       418 IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~-----~~~~~~~~VlIIatTN~p~~L~~  478 (577)
                      |||||||||+++. .+.+.+.....|++.||+.||+-.     +...+.++++||+|+|.-.....
T Consensus        71 VVllDEidKa~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~  135 (171)
T PF07724_consen   71 VVLLDEIDKAHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEII  135 (171)
T ss_dssp             EEEEETGGGCSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHH
T ss_pred             hhhhHHHhhcccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhh
Confidence            9999999999986 566778888999999999998522     22345688999999997665433

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=99.44  E-value=3.9e-12  Score=140.06  Aligned_cols=61  Identities=15%  Similarity=0.174  Sum_probs=53.0

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .+..++.+.+|++++|++.+++.|..++..    ..++.++||+||||||||++|+++|+.+++.
T Consensus        10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~~----~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~   70 (507)
T PRK06645         10 PFARKYRPSNFAELQGQEVLVKVLSYTILN----DRLAGGYLLTGIRGVGKTTSARIIAKAVNCS   70 (507)
T ss_pred             chhhhhCCCCHHHhcCcHHHHHHHHHHHHc----CCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            456778899999999999999999988744    3455789999999999999999999999874

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=99.43  E-value=1.7e-12  Score=149.81  Aligned_cols=60  Identities=18%  Similarity=0.181  Sum_probs=52.2

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      +..+|.+.+|++|+|++.+++.|+.++..    ..+...+||+||+|||||++|++||+.+.|.
T Consensus         5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~----~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~   64 (824)
T PRK07764          5 LYRRYRPATFAEVIGQEHVTEPLSTALDS----GRINHAYLFSGPRGCGKTSSARILARSLNCV   64 (824)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHh----CCCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence            44678899999999999999999999854    3455678999999999999999999999874

>PRK04195 replication factor C large subunit; Provisional

Probab=99.43  E-value=2.3e-12  Score=140.27  Aligned_cols=74  Identities=24%  Similarity=0.185  Sum_probs=64.3

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      .|.+++.+.++++|+|++++++.|...+..-. ....++++||+||||||||++|++||++++..++.+++++..
T Consensus         3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~-~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r   76 (482)
T PRK04195          3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWL-KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR   76 (482)
T ss_pred             CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence            57889999999999999999999999885422 223367899999999999999999999999999999998753

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=99.42  E-value=4.7e-12  Score=143.19  Aligned_cols=60  Identities=18%  Similarity=0.230  Sum_probs=52.7

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      +..++.+.+|++|+|++.+++.|..++..    ..+..++||+||+|||||++|+++|+.+++.
T Consensus         6 LarKYRP~tFddIIGQe~vv~~L~~ai~~----~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~   65 (709)
T PRK08691          6 LARKWRPKTFADLVGQEHVVKALQNALDE----GRLHHAYLLTGTRGVGKTTIARILAKSLNCE   65 (709)
T ss_pred             HHHHhCCCCHHHHcCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence            45678889999999999999999999864    3455789999999999999999999998764

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.41  E-value=3.6e-12  Score=142.05  Aligned_cols=59  Identities=19%  Similarity=0.197  Sum_probs=51.4

Q ss_pred             hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      ..++.+..|++|+|++.+++.|..++..    ..+...+|||||+|+|||++|+++|+.+.+.
T Consensus         7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~----~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~   65 (576)
T PRK14965          7 ARKYRPQTFSDLTGQEHVSRTLQNAIDT----GRVAHAFLFTGARGVGKTSTARILAKALNCE   65 (576)
T ss_pred             HHHhCCCCHHHccCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence            4567889999999999999999999854    3456788999999999999999999998763

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.41  E-value=6.9e-12  Score=140.70  Aligned_cols=61  Identities=25%  Similarity=0.251  Sum_probs=53.0

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .+..++.+.+|++|+|++.+++.|..++..    ..+..++||+||+|||||++|+++|+.+.+.
T Consensus         5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~----~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~   65 (624)
T PRK14959          5 SLTARYRPQTFAEVAGQETVKAILSRAAQE----NRVAPAYLFSGTRGVGKTTIARIFAKALNCE   65 (624)
T ss_pred             hHHHHhCCCCHHHhcCCHHHHHHHHHHHHc----CCCCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence            456778899999999999999999999854    2445689999999999999999999998763

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.41  E-value=5.2e-12  Score=145.81  Aligned_cols=89  Identities=18%  Similarity=0.253  Sum_probs=71.6

Q ss_pred             HhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEE
Q psy16204        208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFN  277 (577)
Q Consensus       208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~  277 (577)
                      ..++......-.++.|+|.++.++.+.+.+...     ..+++||+||||||||++|+.||..+          +..++.
T Consensus       166 ~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~-----~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~  240 (821)
T CHL00095        166 GTNLTKEAIDGNLDPVIGREKEIERVIQILGRR-----TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT  240 (821)
T ss_pred             HHHHHHHHHcCCCCCCCCcHHHHHHHHHHHccc-----ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence            334444445567899999999999999998543     33589999999999999999999987          378899


Q ss_pred             EecCccc--cccccchHHHHHHHHHH
Q psy16204        278 VSSSTLT--SKYRGESEKLVRLLFEM  301 (577)
Q Consensus       278 v~~s~l~--~k~~G~~e~~vr~lF~~  301 (577)
                      ++++.+.  .+|.|+.|..++.+|+.
T Consensus       241 l~~~~l~ag~~~~ge~e~rl~~i~~~  266 (821)
T CHL00095        241 LDIGLLLAGTKYRGEFEERLKRIFDE  266 (821)
T ss_pred             eeHHHHhccCCCccHHHHHHHHHHHH
Confidence            9988776  47888888888888876

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.41  E-value=9.8e-12  Score=139.66  Aligned_cols=59  Identities=15%  Similarity=0.254  Sum_probs=51.7

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      +..++.+.+|++|+|++.+++.|..++...    .+...+||+||+|||||++|+++|+.++|
T Consensus         6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC   64 (618)
T PRK14951          6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ----RLHHAYLFTGTRGVGKTTVSRILAKSLNC   64 (618)
T ss_pred             HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            456788899999999999999999998543    45567899999999999999999999876

>PLN03025 replication factor C subunit; Provisional

Probab=99.40  E-value=8.7e-12  Score=128.62  Aligned_cols=68  Identities=19%  Similarity=0.170  Sum_probs=55.2

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC-----eEEEEecCc
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT-----TFFNVSSST  282 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~-----~fv~v~~s~  282 (577)
                      +|.+++.+.++++++|++++++.|+.++..+    . ..++|||||||||||++|+++|+++.+     .++.+++++
T Consensus         2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~----~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd   74 (319)
T PLN03025          2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDG----N-MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD   74 (319)
T ss_pred             ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcC----C-CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence            4778999999999999999999999887542    2 236999999999999999999999743     345555544

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.40  E-value=5.9e-12  Score=144.31  Aligned_cols=86  Identities=21%  Similarity=0.237  Sum_probs=60.3

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEec
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVSS  280 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~~  280 (577)
                      .......-.++.++|.++..+.+.+.+...     ...++||+||||||||.+|+++|..+          ++.++.++.
T Consensus       176 l~~~a~~g~~~~liGR~~ei~~~i~iL~r~-----~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~  250 (758)
T PRK11034        176 LNQLARVGGIDPLIGREKELERAIQVLCRR-----RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI  250 (758)
T ss_pred             HHHHHHcCCCCcCcCCCHHHHHHHHHHhcc-----CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence            333334456788999999999999988552     23578999999999999999999875          344555554


Q ss_pred             Cccc--cccccchHHHHHHHHHH
Q psy16204        281 STLT--SKYRGESEKLVRLLFEM  301 (577)
Q Consensus       281 s~l~--~k~~G~~e~~vr~lF~~  301 (577)
                      ..+.  .+|.|+.+..++.+|..
T Consensus       251 ~~llaG~~~~Ge~e~rl~~l~~~  273 (758)
T PRK11034        251 GSLLAGTKYRGDFEKRFKALLKQ  273 (758)
T ss_pred             HHHhcccchhhhHHHHHHHHHHH
Confidence            4444  34566666666655544

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.38  E-value=1.3e-11  Score=143.16  Aligned_cols=89  Identities=13%  Similarity=0.220  Sum_probs=68.8

Q ss_pred             HhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC----------CeEEE
Q psy16204        208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG----------TTFFN  277 (577)
Q Consensus       208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~----------~~fv~  277 (577)
                      ..+......+-.++.++|++..+..+.+.+...     ...++||+||||||||++|+.||+.+.          ..++.
T Consensus       174 ~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~-----~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~  248 (852)
T TIGR03345       174 TTDLTAQAREGKIDPVLGRDDEIRQMIDILLRR-----RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS  248 (852)
T ss_pred             hhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcC-----CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence            334445556678899999999988888776432     235899999999999999999999863          45777


Q ss_pred             EecCcccc--ccccchHHHHHHHHHH
Q psy16204        278 VSSSTLTS--KYRGESEKLVRLLFEM  301 (577)
Q Consensus       278 v~~s~l~~--k~~G~~e~~vr~lF~~  301 (577)
                      ++.+.+..  +|.|+.+..++.+|+.
T Consensus       249 l~l~~l~ag~~~~ge~e~~lk~ii~e  274 (852)
T TIGR03345       249 LDLGLLQAGASVKGEFENRLKSVIDE  274 (852)
T ss_pred             eehhhhhcccccchHHHHHHHHHHHH
Confidence            77777653  6888888888888875

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=99.38  E-value=1.4e-11  Score=138.97  Aligned_cols=60  Identities=20%  Similarity=0.255  Sum_probs=51.6

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      +..++.+.+|++|+|++.++..|..++..    ..+...+||+||+|||||++|+++|+.++|.
T Consensus         6 La~KyRP~~f~divGQe~vv~~L~~~l~~----~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~   65 (647)
T PRK07994          6 LARKWRPQTFAEVVGQEHVLTALANALDL----GRLHHAYLFSGTRGVGKTTIARLLAKGLNCE   65 (647)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence            34567889999999999999999998854    2455678999999999999999999998874

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.38  E-value=1.5e-11  Score=136.61  Aligned_cols=60  Identities=22%  Similarity=0.235  Sum_probs=51.6

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      .+..++.+..|++|+|++.+++.|..++...    .+...+||+||+|||||++|+++|+.+.+
T Consensus         5 ~La~KyRP~~f~diiGq~~~v~~L~~~i~~~----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957          5 ALARKYRPQSFAEVAGQQHALNSLVHALETQ----KVHHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             hHHHHHCcCcHHHhcCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3556788899999999999999999988542    44567899999999999999999999876

>KOG0989|consensus

Probab=99.38  E-value=1.8e-11  Score=127.03  Aligned_cols=59  Identities=22%  Similarity=0.246  Sum_probs=52.2

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      .|.++|.+.+++++.||+.+.+.|..++..     .....+|||||||||||+.|+++|.++.+
T Consensus        25 swteKYrPkt~de~~gQe~vV~~L~~a~~~-----~~lp~~LFyGPpGTGKTStalafar~L~~   83 (346)
T KOG0989|consen   25 SWTEKYRPKTFDELAGQEHVVQVLKNALLR-----RILPHYLFYGPPGTGKTSTALAFARALNC   83 (346)
T ss_pred             chHHHhCCCcHHhhcchHHHHHHHHHHHhh-----cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence            477889999999999999999999999954     12248999999999999999999999986

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=99.38  E-value=1.4e-11  Score=126.60  Aligned_cols=61  Identities=20%  Similarity=0.199  Sum_probs=52.6

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      ++..++++..|++|+|++.+++.|.+.+..    ..++..+|||||||+|||++|+++|+.+.+.
T Consensus         3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~----~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~   63 (355)
T TIGR02397         3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKN----GRIAHAYLFSGPRGTGKTSIARIFAKALNCQ   63 (355)
T ss_pred             cHHHHhCCCcHhhccCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            456778889999999999999999998854    3455679999999999999999999998654

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.37  E-value=1.2e-11  Score=138.14  Aligned_cols=58  Identities=19%  Similarity=0.189  Sum_probs=50.9

Q ss_pred             hcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .++.+.+|++|+|++.+++.|+.++..    ..++..+||+||+|||||++|+++|+.+.|.
T Consensus         5 ~kyRP~~f~eivGq~~i~~~L~~~i~~----~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   62 (584)
T PRK14952          5 RKYRPATFAEVVGQEHVTEPLSSALDA----GRINHAYLFSGPRGCGKTSSARILARSLNCA   62 (584)
T ss_pred             HHhCCCcHHHhcCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            567889999999999999999999854    3455678999999999999999999998863

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=99.37  E-value=1.6e-11  Score=137.25  Aligned_cols=60  Identities=20%  Similarity=0.251  Sum_probs=52.7

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      .|.+++.+..|++|+|++.+++.|..++..    ..++.++||+||+|||||++|+++|+.+.|
T Consensus         5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~----~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C   64 (605)
T PRK05896          5 TFYRKYRPHNFKQIIGQELIKKILVNAILN----NKLTHAYIFSGPRGIGKTSIAKIFAKAINC   64 (605)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc----CCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            567788999999999999999999998843    244578999999999999999999999865

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.36  E-value=4.9e-12  Score=146.70  Aligned_cols=88  Identities=19%  Similarity=0.255  Sum_probs=71.2

Q ss_pred             hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEE
Q psy16204        209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNV  278 (577)
Q Consensus       209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v  278 (577)
                      .+......+-.++.|+|++..++.+.+.+...     ...++||+||||||||++|++||..+          +.+++.+
T Consensus       166 ~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~-----~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l  240 (857)
T PRK10865        166 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRR-----TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL  240 (857)
T ss_pred             hhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcC-----CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence            34445555667899999999988888887442     23578999999999999999999998          6788999


Q ss_pred             ecCccc--cccccchHHHHHHHHHH
Q psy16204        279 SSSTLT--SKYRGESEKLVRLLFEM  301 (577)
Q Consensus       279 ~~s~l~--~k~~G~~e~~vr~lF~~  301 (577)
                      +.+.+.  .+|.|+.+..++.+|+.
T Consensus       241 ~l~~l~ag~~~~g~~e~~lk~~~~~  265 (857)
T PRK10865        241 DMGALVAGAKYRGEFEERLKGVLND  265 (857)
T ss_pred             ehhhhhhccchhhhhHHHHHHHHHH
Confidence            888876  46888888888888865

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.36  E-value=1.9e-11  Score=134.62  Aligned_cols=58  Identities=22%  Similarity=0.286  Sum_probs=50.4

Q ss_pred             hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      ..++.+..|++|+|++.+++.|..++..    ..++..+||+||||||||++|+++|+.+.+
T Consensus         5 ~~KyRP~~~~dvvGq~~v~~~L~~~i~~----~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963          5 YQRARPITFDEVVGQEHVKEVLLAALRQ----GRLGHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             HHhhCCCCHHHhcChHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            3578889999999999999999999854    234566799999999999999999999865

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=99.36  E-value=1.6e-11  Score=136.61  Aligned_cols=59  Identities=22%  Similarity=0.205  Sum_probs=51.1

Q ss_pred             hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      ..++.+.+|++|+|++.+++.|+.++..    ..+...+||+||+|||||++|+.+|+++.|.
T Consensus         7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~----~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~   65 (559)
T PRK05563          7 YRKWRPQTFEDVVGQEHITKTLKNAIKQ----GKISHAYLFSGPRGTGKTSAAKIFAKAVNCL   65 (559)
T ss_pred             HHHhCCCcHHhccCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            3567889999999999999999999864    2345679999999999999999999998764

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.36  E-value=1e-11  Score=132.94  Aligned_cols=56  Identities=21%  Similarity=0.262  Sum_probs=47.6

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCC-----ccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIM-----PEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~-----~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .|++|+|++.+++.|+.++..+...     ..++.++||+||+|+|||++|+++|+.+.+.
T Consensus         3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~   63 (394)
T PRK07940          3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT   63 (394)
T ss_pred             hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            4899999999999999999775421     1256789999999999999999999997764

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=99.35  E-value=1.8e-11  Score=139.22  Aligned_cols=61  Identities=18%  Similarity=0.230  Sum_probs=53.5

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .+..++++..|++|+|++.+++.|...+..    ..+...+||+||+|||||++|+++|+.+.|.
T Consensus         7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~----~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~   67 (725)
T PRK07133          7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKS----NKISHAYLFSGPRGTGKTSVAKIFANALNCS   67 (725)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence            456788899999999999999999999854    3456789999999999999999999998774

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.35  E-value=2.5e-11  Score=123.53  Aligned_cols=70  Identities=20%  Similarity=0.217  Sum_probs=58.8

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC-----CeEEEEecCccc
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG-----TTFFNVSSSTLT  284 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~-----~~fv~v~~s~l~  284 (577)
                      .|.+++.+.++++++|++.+++.|..++..+.     ..++||+||||||||++|+++++++.     .++++++++++.
T Consensus         4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~-----~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~   78 (337)
T PRK12402          4 LWTEKYRPALLEDILGQDEVVERLSRAVDSPN-----LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF   78 (337)
T ss_pred             chHHhhCCCcHHHhcCCHHHHHHHHHHHhCCC-----CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence            57788899999999999999999999886531     23699999999999999999999984     356788887653

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=99.35  E-value=6.3e-12  Score=127.89  Aligned_cols=71  Identities=24%  Similarity=0.178  Sum_probs=61.9

Q ss_pred             HhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      +-.|..++.+..+++++|++++++.|...+..    ...+..+||+||||+|||++|++++++++.+++++++++
T Consensus         8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~----~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~   78 (316)
T PHA02544          8 EFMWEQKYRPSTIDECILPAADKETFKSIVKK----GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD   78 (316)
T ss_pred             CCcceeccCCCcHHHhcCcHHHHHHHHHHHhc----CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence            44788899999999999999999999999853    344566777999999999999999999999999998875

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=99.34  E-value=5.4e-11  Score=129.24  Aligned_cols=61  Identities=21%  Similarity=0.218  Sum_probs=52.2

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .+.+++.+.+|++|+|++.++..|...+..    ..++.++|||||+|+|||++|+++|+.+.+.
T Consensus         6 ~~~~kyRP~~~~diiGq~~~v~~L~~~i~~----~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~   66 (451)
T PRK06305          6 VSSRKYRPQTFSEILGQDAVVAVLKNALRF----NRAAHAYLFSGIRGTGKTTLARIFAKALNCQ   66 (451)
T ss_pred             HHHHHhCCCCHHHhcCcHHHHHHHHHHHHc----CCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence            345677889999999999999999999854    3455789999999999999999999998764

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.34  E-value=7.9e-11  Score=130.25  Aligned_cols=60  Identities=18%  Similarity=0.246  Sum_probs=51.5

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      +..++.+..|++|+|++.+++.|..++..    ..+...+||+||+|||||++|+++|+.+++.
T Consensus         6 l~~k~rP~~f~divGq~~v~~~L~~~i~~----~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (527)
T PRK14969          6 LARKWRPKSFSELVGQEHVVRALTNALEQ----QRLHHAYLFTGTRGVGKTTLARILAKSLNCE   65 (527)
T ss_pred             HHHHhCCCcHHHhcCcHHHHHHHHHHHHc----CCCCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            44567788999999999999999998854    3445678999999999999999999998864

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.33  E-value=2.5e-11  Score=126.95  Aligned_cols=61  Identities=18%  Similarity=0.181  Sum_probs=52.8

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .+.+++.+.+|++|+|++.+++.+...+..    ..++.++|||||||+|||++|+++|+.+.++
T Consensus         6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~----~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~   66 (367)
T PRK14970          6 VSARKYRPQTFDDVVGQSHITNTLLNAIEN----NHLAQALLFCGPRGVGKTTCARILARKINQP   66 (367)
T ss_pred             HHHHHHCCCcHHhcCCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            456788899999999999999999999854    3455789999999999999999999998653

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.33  E-value=9.7e-11  Score=122.56  Aligned_cols=65  Identities=18%  Similarity=0.029  Sum_probs=53.0

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCccc
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTLT  284 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l~  284 (577)
                      ..+.++|.++..+.|...+...+. ...+.+++++||||||||++++.+++++     ++.+++++|....
T Consensus        28 ~P~~l~~Re~e~~~l~~~l~~~~~-~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~   97 (394)
T PRK00411         28 VPENLPHREEQIEELAFALRPALR-GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR   97 (394)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHhC-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence            446899999999999998854433 2334679999999999999999999887     5789999998654

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.31  E-value=5.9e-11  Score=126.51  Aligned_cols=60  Identities=13%  Similarity=0.166  Sum_probs=52.0

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      ....+.+..|++|+|++.++..|+.++..    ..++.++||+||||||||++|+++|+.+.+.
T Consensus         6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~----~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955          6 IARKYRPKKFADITAQEHITRTIQNSLRM----GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             HHHhcCCCcHhhccChHHHHHHHHHHHHh----CCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            34577889999999999999999998854    3456789999999999999999999999874

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.30  E-value=1.2e-10  Score=120.36  Aligned_cols=64  Identities=20%  Similarity=0.101  Sum_probs=51.4

Q ss_pred             cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCccc
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---------TTFFNVSSSTLT  284 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~l~  284 (577)
                      .++++|.++.++.|..++...+. ...+.+++++||||||||++++++++++.         +.+++++|....
T Consensus        14 p~~l~gRe~e~~~l~~~l~~~~~-~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~   86 (365)
T TIGR02928        14 PDRIVHRDEQIEELAKALRPILR-GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD   86 (365)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence            35899999999999998854332 23446799999999999999999998763         578999997653

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=99.29  E-value=2.7e-11  Score=133.00  Aligned_cols=143  Identities=23%  Similarity=0.299  Sum_probs=106.9

Q ss_pred             CCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccccccccch
Q psy16204        215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLTSKYRGES  291 (577)
Q Consensus       215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~~k~~G~~  291 (577)
                      ....++++|+|...+...+.+.+..-   ......||+.|.+||||..+|++|.+...   .||+.++|..+-       
T Consensus       239 ~a~y~f~~Iig~S~~m~~~~~~akr~---A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP-------  308 (560)
T COG3829         239 KAKYTFDDIIGESPAMLRVLELAKRI---AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP-------  308 (560)
T ss_pred             ccccchhhhccCCHHHHHHHHHHHhh---cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC-------
Confidence            34568999999999988888877432   23336899999999999999999998874   799999999874       


Q ss_pred             HHHHH-HHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCccc-ccccCCCCccccccccC
Q psy16204        292 EKLVR-LLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTR-AENQESGPSIFSVMVDG  369 (577)
Q Consensus       292 e~~vr-~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~  369 (577)
                      +.++. ++|..                                        .+|||||+... ..|.             
T Consensus       309 e~LlESELFGy----------------------------------------e~GAFTGA~~~GK~Gl-------------  335 (560)
T COG3829         309 ETLLESELFGY----------------------------------------EKGAFTGASKGGKPGL-------------  335 (560)
T ss_pred             HHHHHHHHhCc----------------------------------------CCccccccccCCCCcc-------------
Confidence            34443 55543                                        57999998754 4433             


Q ss_pred             CCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHH
Q psy16204        370 LGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLI  449 (577)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~  449 (577)
                                     |+.+..                          ..||+|||..|..            .++..||.
T Consensus       336 ---------------fE~A~g--------------------------GTLFLDEIgempl------------~LQaKLLR  362 (560)
T COG3829         336 ---------------FELANG--------------------------GTLFLDEIGEMPL------------PLQAKLLR  362 (560)
T ss_pred             ---------------eeeccC--------------------------CeEEehhhccCCH------------HHHHHHHH
Confidence                           344444                          4999999988865            56888888


Q ss_pred             HHh-----CCCCCcCCCceEEEEEecCCc
Q psy16204        450 QMD-----GLNSSLYEDKIIMILAATNHP  473 (577)
Q Consensus       450 ~mD-----~~~~~~~~~~~VlIIatTN~p  473 (577)
                      .+.     .+.+...-.-.|-||||||+.
T Consensus       363 VLQEkei~rvG~t~~~~vDVRIIAATN~n  391 (560)
T COG3829         363 VLQEKEIERVGGTKPIPVDVRIIAATNRN  391 (560)
T ss_pred             HHhhceEEecCCCCceeeEEEEEeccCcC
Confidence            876     355544445679999999975

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=99.29  E-value=5.4e-11  Score=129.58  Aligned_cols=141  Identities=25%  Similarity=0.340  Sum_probs=109.5

Q ss_pred             CCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccccccccchHH
Q psy16204        217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLTSKYRGESEK  293 (577)
Q Consensus       217 ~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~~k~~G~~e~  293 (577)
                      ......|||+..+...+.+.+..-....   ..|||.|.+||||-.+||+|.+...   .||++++|+.+-+       .
T Consensus       219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd---~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe-------s  288 (550)
T COG3604         219 VLEVGGIIGRSPAMRQLLKEIEVVAKSD---STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE-------S  288 (550)
T ss_pred             hcccccceecCHHHHHHHHHHHHHhcCC---CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch-------H
Confidence            4577899999999999999885522211   4799999999999999999998875   6999999998743       3


Q ss_pred             HHH-HHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCC
Q psy16204        294 LVR-LLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGK  372 (577)
Q Consensus       294 ~vr-~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (577)
                      .+. ++|..                                        .+||||++-..+.|.                
T Consensus       289 LlESELFGH----------------------------------------eKGAFTGA~~~r~Gr----------------  312 (550)
T COG3604         289 LLESELFGH----------------------------------------EKGAFTGAINTRRGR----------------  312 (550)
T ss_pred             HHHHHHhcc----------------------------------------cccccccchhccCcc----------------
Confidence            443 56654                                        689999999888866                


Q ss_pred             CCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHh
Q psy16204        373 GPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMD  452 (577)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD  452 (577)
                                  |+.+.+|                          .||+|||..|..            .++..||..+.
T Consensus       313 ------------FElAdGG--------------------------TLFLDEIGelPL------------~lQaKLLRvLQ  342 (550)
T COG3604         313 ------------FELADGG--------------------------TLFLDEIGELPL------------ALQAKLLRVLQ  342 (550)
T ss_pred             ------------eeecCCC--------------------------eEechhhccCCH------------HHHHHHHHHHh
Confidence                        6666666                          999999998876            56777777664


Q ss_pred             -----CCCCCcCCCceEEEEEecCCc
Q psy16204        453 -----GLNSSLYEDKIIMILAATNHP  473 (577)
Q Consensus       453 -----~~~~~~~~~~~VlIIatTN~p  473 (577)
                           .+.++....-.|-||||||+-
T Consensus       343 egEieRvG~~r~ikVDVRiIAATNRD  368 (550)
T COG3604         343 EGEIERVGGDRTIKVDVRVIAATNRD  368 (550)
T ss_pred             hcceeecCCCceeEEEEEEEeccchh
Confidence                 455543344569999999974

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.28  E-value=6.3e-11  Score=133.34  Aligned_cols=61  Identities=18%  Similarity=0.236  Sum_probs=53.1

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      ++..++.+..|++|+|++.+++.|..++...    .+..++||+||+|+|||++|+++|+.+.+.
T Consensus         5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~----rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~   65 (620)
T PRK14948          5 PLHHKYRPQRFDELVGQEAIATTLKNALISN----RIAPAYLFTGPRGTGKTSSARILAKSLNCL   65 (620)
T ss_pred             hHHHHhCCCcHhhccChHHHHHHHHHHHHcC----CCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence            4556788899999999999999999998653    344689999999999999999999999874

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.28  E-value=2.5e-11  Score=140.75  Aligned_cols=87  Identities=18%  Similarity=0.266  Sum_probs=68.2

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVS  279 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~  279 (577)
                      +..+...+-.++.++|++..++.+.+.+...     ...++||+||||||||++|+++|..+          +.+++.++
T Consensus       162 ~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~-----~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~  236 (852)
T TIGR03346       162 DLTERAREGKLDPVIGRDEEIRRTIQVLSRR-----TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD  236 (852)
T ss_pred             hHHHHhhCCCCCcCCCcHHHHHHHHHHHhcC-----CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence            4445555667899999999988888887442     23578999999999999999999986          56788888


Q ss_pred             cCccc--cccccchHHHHHHHHHH
Q psy16204        280 SSTLT--SKYRGESEKLVRLLFEM  301 (577)
Q Consensus       280 ~s~l~--~k~~G~~e~~vr~lF~~  301 (577)
                      .+.+.  .+|.|+.+..++.+|..
T Consensus       237 ~~~l~a~~~~~g~~e~~l~~~l~~  260 (852)
T TIGR03346       237 MGALIAGAKYRGEFEERLKAVLNE  260 (852)
T ss_pred             HHHHhhcchhhhhHHHHHHHHHHH
Confidence            77765  46778878777777765

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=99.28  E-value=4.2e-12  Score=139.66  Aligned_cols=181  Identities=18%  Similarity=0.155  Sum_probs=119.0

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeE--EEEecCccccccc
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTF--FNVSSSTLTSKYR  288 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~f--v~v~~s~l~~k~~  288 (577)
                      ...++.+..|++++||+.+...|..++...    ++..+.||.||.|||||++||.+|+.++|.-  ..-.|.+... ..
T Consensus         6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~----ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~-Ck   80 (515)
T COG2812           6 LARKYRPKTFDDVVGQEHVVKTLSNALENG----RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS-CK   80 (515)
T ss_pred             HHHHhCcccHHHhcccHHHHHHHHHHHHhC----cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh-hH
Confidence            446788899999999999999999998653    4456899999999999999999999998752  1111111100 00


Q ss_pred             cchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccccccc
Q psy16204        289 GESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVD  368 (577)
Q Consensus       289 G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  368 (577)
                      +-.+...-++.+                                                                    
T Consensus        81 ~I~~g~~~DviE--------------------------------------------------------------------   92 (515)
T COG2812          81 EINEGSLIDVIE--------------------------------------------------------------------   92 (515)
T ss_pred             hhhcCCcccchh--------------------------------------------------------------------
Confidence            000000001111                                                                    


Q ss_pred             CCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHH
Q psy16204        369 GLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELL  448 (577)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL  448 (577)
                                -..+++          ..++|...+++++.+......+.|++|||++.|..            ..+|.||
T Consensus        93 ----------iDaASn----------~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~------------~afNALL  140 (515)
T COG2812          93 ----------IDAASN----------TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK------------QAFNALL  140 (515)
T ss_pred             ----------hhhhhc----------cChHHHHHHHHHhccCCccccceEEEEecHHhhhH------------HHHHHHh
Confidence                      111111          13566677777776666677778999999998865            5699999


Q ss_pred             HHHhCCCCCcCCCceEEEEEecCCchhhHHH-hhcCcccc-cccCHHHHHHHcCCC
Q psy16204        449 IQMDGLNSSLYEDKIIMILAATNHPYQLLTL-CLEGVVID-VNLDFHKISKMLEGY  502 (577)
Q Consensus       449 ~~mD~~~~~~~~~~~VlIIatTN~p~~L~~a-llrr~~i~-~~vdl~~LA~~t~G~  502 (577)
                      ..++.-.      .||++|.||..|..|+.. +.|+-.++ ..++.+.|+.+...+
T Consensus       141 KTLEEPP------~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i  190 (515)
T COG2812         141 KTLEEPP------SHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAI  190 (515)
T ss_pred             cccccCc------cCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHH
Confidence            9999765      457777777777775444 44444443 457777777766433

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=99.28  E-value=1e-10  Score=130.37  Aligned_cols=59  Identities=17%  Similarity=0.156  Sum_probs=51.3

Q ss_pred             hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      ..++.+..|++|+|++.+++.|...+..    ..++..+|||||+|+|||++|+++|+.+.+.
T Consensus         7 ~~kyRP~~f~diiGqe~iv~~L~~~i~~----~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~   65 (563)
T PRK06647          7 ATKRRPRDFNSLEGQDFVVETLKHSIES----NKIANAYIFSGPRGVGKTSSARAFARCLNCV   65 (563)
T ss_pred             HHHhCCCCHHHccCcHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence            3567888999999999999999999854    3455789999999999999999999998763

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.27  E-value=1.6e-10  Score=130.04  Aligned_cols=60  Identities=13%  Similarity=0.174  Sum_probs=52.3

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      ..+++.+.+|++|+|++.++..|+.++..    ..++.++||+||+|||||++|+++|+.+.|.
T Consensus         6 l~~kyRP~~f~eivGQe~i~~~L~~~i~~----~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~   65 (620)
T PRK14954          6 IARKYRPSKFADITAQEHITHTIQNSLRM----DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (620)
T ss_pred             HHHHHCCCCHHHhcCcHHHHHHHHHHHHc----CCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            34577889999999999999999998743    3556789999999999999999999999874

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=99.26  E-value=1.2e-10  Score=130.53  Aligned_cols=62  Identities=15%  Similarity=0.122  Sum_probs=53.6

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      .+..++.+..|++|+|++.+++.|..++..    ..++.++||+||+|+|||++|+++|+.+.|..
T Consensus        13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~----gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~   74 (598)
T PRK09111         13 VLARKYRPQTFDDLIGQEAMVRTLTNAFET----GRIAQAFMLTGVRGVGKTTTARILARALNYEG   74 (598)
T ss_pred             hHHhhhCCCCHHHhcCcHHHHHHHHHHHHc----CCCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence            345678889999999999999999998854    34567899999999999999999999998753

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.26  E-value=7.6e-11  Score=101.79  Aligned_cols=57  Identities=42%  Similarity=0.521  Sum_probs=46.1

Q ss_pred             cCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcccc
Q psy16204        224 AGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLTS  285 (577)
Q Consensus       224 iG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~~  285 (577)
                      +|.+.+.+.+..++..+     ....++++||||||||++++.++..+   +.+++.+++.+...
T Consensus         1 ~~~~~~~~~i~~~~~~~-----~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~   60 (151)
T cd00009           1 VGQEEAIEALREALELP-----PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE   60 (151)
T ss_pred             CchHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh
Confidence            36777788888877442     23579999999999999999999998   88999999876543

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.26  E-value=1.4e-10  Score=129.59  Aligned_cols=60  Identities=18%  Similarity=0.222  Sum_probs=51.4

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      +.+++.+.+|++|+|++.+++.|...+...    .+...+||+||+|+|||++|+++|+.+.+.
T Consensus         6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~   65 (585)
T PRK14950          6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEG----RVAHAYLFTGPRGVGKTSTARILAKAVNCT   65 (585)
T ss_pred             HHHHhCCCCHHHhcCCHHHHHHHHHHHHhC----CCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            346788899999999999999999988542    345678999999999999999999998753

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.26  E-value=1.7e-10  Score=126.65  Aligned_cols=60  Identities=22%  Similarity=0.231  Sum_probs=52.0

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      .+..++.+..|++|+|++.+...|...+..    ..+...+|||||+|+|||++|+++|+.+.+
T Consensus         5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~----~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c   64 (486)
T PRK14953          5 PFARKYRPKFFKEVIGQEIVVRILKNAVKL----QRVSHAYIFAGPRGTGKTTIARILAKVLNC   64 (486)
T ss_pred             HHHHhhCCCcHHHccChHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            466778889999999999999999999854    234567899999999999999999999876

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=99.25  E-value=3.4e-10  Score=125.51  Aligned_cols=59  Identities=17%  Similarity=0.131  Sum_probs=51.3

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      +..++.+.+|++|+|++.+++.|...+..    ..++..+|||||+|+|||++|+++|+.+.+
T Consensus         4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~----grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c   62 (535)
T PRK08451          4 LALKYRPKHFDELIGQESVSKTLSLALDN----NRLAHAYLFSGLRGSGKTSSARIFARALVC   62 (535)
T ss_pred             HHHHHCCCCHHHccCcHHHHHHHHHHHHc----CCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            45678889999999999999999999853    345667899999999999999999999854

>KOG0745|consensus

Probab=99.24  E-value=2.2e-11  Score=130.76  Aligned_cols=54  Identities=31%  Similarity=0.455  Sum_probs=48.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-ccccch-HHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRGES-EKLVRLLFEM  301 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~~G~~-e~~vr~lF~~  301 (577)
                      .+|||.||+|+|||+||+-||+.+++||...+|..|+. +|+|++ |..+..|+..
T Consensus       227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~  282 (564)
T KOG0745|consen  227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQE  282 (564)
T ss_pred             ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHH
Confidence            57999999999999999999999999999999999986 899999 6667777765

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.22  E-value=2.5e-10  Score=130.57  Aligned_cols=67  Identities=16%  Similarity=0.220  Sum_probs=55.5

Q ss_pred             hhhhcCCCCCcccccCcHHHHH---HHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKA---ILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~---~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      ++..++.+.++++++|++....   .|.+++..     ....++|||||||||||++|+++|+.++.+|+.+++.
T Consensus        17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~-----~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~   86 (725)
T PRK13341         17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKA-----DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV   86 (725)
T ss_pred             ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-----CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence            5666778889999999999885   56666643     2235799999999999999999999999999888875

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=99.21  E-value=1e-09  Score=110.87  Aligned_cols=59  Identities=22%  Similarity=0.153  Sum_probs=51.1

Q ss_pred             hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ..|.+++.+.+|++++|++++++.|..++..+-     ..++||+||||||||++|+++++++.
T Consensus         5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~-----~~~~ll~G~~G~GKt~~~~~l~~~l~   63 (319)
T PRK00440          5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKN-----MPHLLFAGPPGTGKTTAALALARELY   63 (319)
T ss_pred             CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCC-----CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence            368889999999999999999999999985421     23589999999999999999999974

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.20  E-value=9.5e-10  Score=111.03  Aligned_cols=35  Identities=29%  Similarity=0.283  Sum_probs=32.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      ..+||+||||||||++|++||+.+|.+|+.++|..
T Consensus        22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~   56 (262)
T TIGR02640        22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDA   56 (262)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCc
Confidence            47999999999999999999999999999999875

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=99.20  E-value=2.7e-10  Score=124.17  Aligned_cols=141  Identities=25%  Similarity=0.312  Sum_probs=107.5

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccccccccchHHH
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLTSKYRGESEKL  294 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~~k~~G~~e~~  294 (577)
                      ....+++|...+.+.|.+.+..- .  ..--.||++|++||||-.+||+|.+...   .||+.|+|..+..       .+
T Consensus       138 ~~~~~liG~S~am~~l~~~i~kv-A--~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~-------~l  207 (464)
T COG2204         138 SLGGELVGESPAMQQLRRLIAKV-A--PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE-------NL  207 (464)
T ss_pred             cccCCceecCHHHHHHHHHHHHH-h--CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH-------HH
Confidence            45779999999999999988321 1  1124699999999999999999998875   5999999998743       34


Q ss_pred             HH-HHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCC
Q psy16204        295 VR-LLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKG  373 (577)
Q Consensus       295 vr-~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (577)
                      +. ++|..                                        .+|+||++.....|.                 
T Consensus       208 ~ESELFGh----------------------------------------ekGAFTGA~~~r~G~-----------------  230 (464)
T COG2204         208 LESELFGH----------------------------------------EKGAFTGAITRRIGR-----------------  230 (464)
T ss_pred             HHHHhhcc----------------------------------------cccCcCCcccccCcc-----------------
Confidence            43 46653                                        479999999888866                 


Q ss_pred             CcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHh-
Q psy16204        374 PWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMD-  452 (577)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD-  452 (577)
                                 |+.+.+|                          +||||||..+..            .++..||..+. 
T Consensus       231 -----------fE~A~GG--------------------------TLfLDEI~~mpl------------~~Q~kLLRvLqe  261 (464)
T COG2204         231 -----------FEQANGG--------------------------TLFLDEIGEMPL------------ELQVKLLRVLQE  261 (464)
T ss_pred             -----------eeEcCCc--------------------------eEEeeccccCCH------------HHHHHHHHHHHc
Confidence                       4444444                          999999998876            67888888876 


Q ss_pred             ----CCCCCcCCCceEEEEEecCCch
Q psy16204        453 ----GLNSSLYEDKIIMILAATNHPY  474 (577)
Q Consensus       453 ----~~~~~~~~~~~VlIIatTN~p~  474 (577)
                          .+.++..-.-+|-||+|||..-
T Consensus       262 ~~~~rvG~~~~i~vdvRiIaaT~~dL  287 (464)
T COG2204         262 REFERVGGNKPIKVDVRIIAATNRDL  287 (464)
T ss_pred             CeeEecCCCcccceeeEEEeecCcCH
Confidence                3555443445799999999763

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=99.19  E-value=1.2e-10  Score=111.06  Aligned_cols=58  Identities=26%  Similarity=0.322  Sum_probs=42.3

Q ss_pred             ccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204        223 VAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL  283 (577)
Q Consensus       223 IiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l  283 (577)
                      |+|.+.+.+.+.+.+..-...+   ..|||+|++||||+.+|++|.+...   .||+.|+|+.+
T Consensus         1 liG~s~~m~~~~~~~~~~a~~~---~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~   61 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAASSD---LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL   61 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHTTST---S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS
T ss_pred             CEeCCHHHHHHHHHHHHHhCCC---CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh
Confidence            5677777777776664322222   6799999999999999999998764   79999999977

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.18  E-value=8.3e-11  Score=105.97  Aligned_cols=37  Identities=32%  Similarity=0.387  Sum_probs=32.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      +|||+||||||||++|+.+|+.++.+++.+.++..++
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~   37 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTT   37 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTST
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccc
Confidence            5899999999999999999999999999999986543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.18  E-value=3.7e-09  Score=121.93  Aligned_cols=64  Identities=11%  Similarity=-0.022  Sum_probs=50.2

Q ss_pred             cccccCcHHHHHHHHHHHHCcCCCccccce-eEEecCCCCChHHHHHHHHHHhC----------CeEEEEecCccc
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKE-ALERHSHGTGKTMLAKAVATECG----------TTFFNVSSSTLT  284 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~-ILL~GPpGtGKT~LAkaLA~el~----------~~fv~v~~s~l~  284 (577)
                      -+.|.|.++.++.|..+|.--+... .+.+ ++++|+||||||.+++.+.+++.          +.+++|+|..+.
T Consensus       754 PD~LPhREeEIeeLasfL~paIkgs-gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Ls  828 (1164)
T PTZ00112        754 PKYLPCREKEIKEVHGFLESGIKQS-GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVV  828 (1164)
T ss_pred             CCcCCChHHHHHHHHHHHHHHHhcC-CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccC
Confidence            3689999999999999986555432 2334 46999999999999999987762          567899997653

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.16  E-value=3.5e-10  Score=121.49  Aligned_cols=182  Identities=20%  Similarity=0.219  Sum_probs=128.4

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCccccccccchHH
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----GTTFFNVSSSTLTSKYRGESEK  293 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~l~~k~~G~~e~  293 (577)
                      ..+.+++|.+...+.+.+.+..   .+..-..||++|++||||+.+|++|+...    +.||+.|+|+.+.+..      
T Consensus        75 ~~~~~LIG~~~~~~~~~eqik~---~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~------  145 (403)
T COG1221          75 EALDDLIGESPSLQELREQIKA---YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL------  145 (403)
T ss_pred             hhhhhhhccCHHHHHHHHHHHh---hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCH------
Confidence            4678999999988888888854   22233579999999999999999998554    4699999999986542      


Q ss_pred             HHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCC
Q psy16204        294 LVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKG  373 (577)
Q Consensus       294 ~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (577)
                      ..-++|..                                        .+|+||++.....|.                 
T Consensus       146 ~~~eLFG~----------------------------------------~kGaftGa~~~k~Gl-----------------  168 (403)
T COG1221         146 QEAELFGH----------------------------------------EKGAFTGAQGGKAGL-----------------  168 (403)
T ss_pred             HHHHHhcc----------------------------------------ccceeecccCCcCch-----------------
Confidence            12236654                                        579999987777765                 


Q ss_pred             CcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhC
Q psy16204        374 PWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG  453 (577)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~  453 (577)
                                 |+++.+|                          +||+|||..+..            ..+..||..||.
T Consensus       169 -----------fe~A~GG--------------------------tLfLDEI~~LP~------------~~Q~kLl~~le~  199 (403)
T COG1221         169 -----------FEQANGG--------------------------TLFLDEIHRLPP------------EGQEKLLRVLEE  199 (403)
T ss_pred             -----------heecCCC--------------------------EEehhhhhhCCH------------hHHHHHHHHHHc
Confidence                       4444444                          999999999987            457788888885


Q ss_pred             -----CCCCcCCCceEEEEEecCCc--hhhHH--Hhhc-CcccccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy16204        454 -----LNSSLYEDKIIMILAATNHP--YQLLT--LCLE-GVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRR  521 (577)
Q Consensus       454 -----~~~~~~~~~~VlIIatTN~p--~~L~~--allr-r~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr  521 (577)
                           +++......+|.+|+|||..  +.+..  -+.+ +..+  .|.+..|.++     ..||..++..=.....++
T Consensus       200 g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~--~I~LPpLrER-----~~Di~~L~e~Fl~~~~~~  270 (403)
T COG1221         200 GEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNIL--TITLPPLRER-----KEDILLLAEHFLKSEARR  270 (403)
T ss_pred             CceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCc--eecCCChhhc-----hhhHHHHHHHHHHHHHHH
Confidence                 44444455679999998743  23444  4444 4333  5677777775     467777776554444444

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.16  E-value=8.9e-10  Score=117.15  Aligned_cols=65  Identities=25%  Similarity=0.298  Sum_probs=46.2

Q ss_pred             CCCccc-ccCcHH--HHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCccc
Q psy16204        217 NVQWNK-VAGLTE--AKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTLT  284 (577)
Q Consensus       217 ~v~~~d-IiG~~~--ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l~  284 (577)
                      ..++++ ++|...  +...+.++...|   ...+..++||||+|+|||+|++++++++     +..++++++.++.
T Consensus       106 ~~tfd~fi~g~~n~~a~~~~~~~~~~~---~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~  178 (405)
T TIGR00362       106 KYTFDNFVVGKSNRLAHAAALAVAENP---GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT  178 (405)
T ss_pred             CCcccccccCCcHHHHHHHHHHHHhCc---CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH
Confidence            346666 445433  455555555543   2345679999999999999999999987     5778888876653

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.15  E-value=1e-09  Score=123.65  Aligned_cols=60  Identities=18%  Similarity=0.199  Sum_probs=52.2

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      +..++.+.+|++|+|++.+++.|..++..    ..+...+|||||+|+|||++|+++|+.+.|.
T Consensus         7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~~----~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~   66 (614)
T PRK14971          7 SARKYRPSTFESVVGQEALTTTLKNAIAT----NKLAHAYLFCGPRGVGKTTCARIFAKTINCQ   66 (614)
T ss_pred             HHHHHCCCCHHHhcCcHHHHHHHHHHHHc----CCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            45678889999999999999999999854    3455779999999999999999999998764

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=99.14  E-value=7.1e-10  Score=120.70  Aligned_cols=47  Identities=17%  Similarity=0.168  Sum_probs=39.7

Q ss_pred             cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      ++++.+.++..+.+...+..       .++++|+||||||||++|+.+|..+..
T Consensus       174 l~d~~i~e~~le~l~~~L~~-------~~~iil~GppGtGKT~lA~~la~~l~~  220 (459)
T PRK11331        174 LNDLFIPETTIETILKRLTI-------KKNIILQGPPGVGKTFVARRLAYLLTG  220 (459)
T ss_pred             hhcccCCHHHHHHHHHHHhc-------CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence            56788888888888887753       268999999999999999999998753

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=99.14  E-value=7.2e-10  Score=119.72  Aligned_cols=65  Identities=20%  Similarity=0.218  Sum_probs=46.7

Q ss_pred             CCCcccc-cCc--HHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCccc
Q psy16204        217 NVQWNKV-AGL--TEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTLT  284 (577)
Q Consensus       217 ~v~~~dI-iG~--~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l~  284 (577)
                      ..+|++. +|.  ..+...+.+....|   ...++.++||||+|+|||+|++++++++     +..++++++.+++
T Consensus       118 ~~tfd~fv~g~~n~~a~~~~~~~~~~~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~  190 (450)
T PRK00149        118 KYTFDNFVVGKSNRLAHAAALAVAENP---GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT  190 (450)
T ss_pred             CCcccccccCCCcHHHHHHHHHHHhCc---CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence            3456663 343  33666666666554   2345679999999999999999999997     5668888887654

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.10  E-value=2e-10  Score=119.13  Aligned_cols=57  Identities=26%  Similarity=0.324  Sum_probs=48.5

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      ..++|.++++..+..++...       ..+||.||||||||++|+.+|+.++.+|+++.|..-+
T Consensus        24 ~~~~g~~~~~~~~l~a~~~~-------~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l   80 (329)
T COG0714          24 KVVVGDEEVIELALLALLAG-------GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDL   80 (329)
T ss_pred             CeeeccHHHHHHHHHHHHcC-------CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCC
Confidence            33788888888877777443       5799999999999999999999999999999998543

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.07  E-value=2.2e-09  Score=120.91  Aligned_cols=67  Identities=22%  Similarity=0.283  Sum_probs=54.1

Q ss_pred             hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEecC
Q psy16204        212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVSSS  281 (577)
Q Consensus       212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~~s  281 (577)
                      .....+..+++|+|++.+...+...+..+     .+..+||+||||||||++|++++..+          +.+|+.++|.
T Consensus       145 ~~~~rp~~~~~iiGqs~~~~~l~~~ia~~-----~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~  219 (615)
T TIGR02903       145 QSLLRPRAFSEIVGQERAIKALLAKVASP-----FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGT  219 (615)
T ss_pred             hhhcCcCcHHhceeCcHHHHHHHHHHhcC-----CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEech
Confidence            34456678999999999999888777443     23579999999999999999998765          3578999987


Q ss_pred             cc
Q psy16204        282 TL  283 (577)
Q Consensus       282 ~l  283 (577)
                      .+
T Consensus       220 ~l  221 (615)
T TIGR02903       220 TL  221 (615)
T ss_pred             hc
Confidence            65

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR01817 nifA Nif-specific regulatory protein

Probab=99.06  E-value=2.2e-09  Score=118.30  Aligned_cols=65  Identities=22%  Similarity=0.246  Sum_probs=53.1

Q ss_pred             CCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204        217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT  284 (577)
Q Consensus       217 ~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~  284 (577)
                      ...+++++|...+.+.+.+.+..-..   ....|||+|++||||+++|++|+...   +.||+.++|..+.
T Consensus       192 ~~~~~~liG~s~~~~~~~~~~~~~a~---~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~  259 (534)
T TIGR01817       192 SGKEDGIIGKSPAMRQVVDQARVVAR---SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS  259 (534)
T ss_pred             cCccCceEECCHHHHHHHHHHHHHhC---cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence            35788999999999988888744221   22479999999999999999999885   4799999999773

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=99.04  E-value=4.6e-09  Score=109.91  Aligned_cols=59  Identities=17%  Similarity=0.190  Sum_probs=44.2

Q ss_pred             ccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccc
Q psy16204        223 VAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLT  284 (577)
Q Consensus       223 IiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~  284 (577)
                      |+|...+.+.+.+.+..-.   ..-..|||+|++||||+++|++|.....   .||+.|+|..+.
T Consensus         1 liG~S~~m~~~~~~~~~~a---~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~   62 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRLA---PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALS   62 (329)
T ss_pred             CCcCCHHHHHHHHHHHHHh---CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCC
Confidence            4666666666666653311   1225799999999999999999987764   799999999763

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=6.4e-09  Score=110.67  Aligned_cols=75  Identities=17%  Similarity=0.189  Sum_probs=57.6

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe-----EEEEecCccccccccchHHHH
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT-----FFNVSSSTLTSKYRGESEKLV  295 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~-----fv~v~~s~l~~k~~G~~e~~v  295 (577)
                      +++.+.++.++.|..++.- ......+.++++||+||||||.+++-+++++.-.     +++|+|-.+.+.|     ..+
T Consensus        17 ~~l~~Re~ei~~l~~~l~~-~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~-----~i~   90 (366)
T COG1474          17 EELPHREEEINQLASFLAP-ALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY-----QVL   90 (366)
T ss_pred             ccccccHHHHHHHHHHHHH-HhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH-----HHH
Confidence            4589999999999998754 4444556679999999999999999999998644     8999998764432     344


Q ss_pred             HHHHHH
Q psy16204        296 RLLFEM  301 (577)
Q Consensus       296 r~lF~~  301 (577)
                      ..++.+
T Consensus        91 ~~i~~~   96 (366)
T COG1474          91 SKILNK   96 (366)
T ss_pred             HHHHHH
Confidence            455543

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.03  E-value=5.9e-09  Score=110.43  Aligned_cols=80  Identities=25%  Similarity=0.204  Sum_probs=60.3

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC--CeEEEEecCccccccccchHHHH
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEKLV  295 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l~~k~~G~~e~~v  295 (577)
                      ..-+-++||.+|.+..--.+..-.....--++|||.||||||||.||-+||+++|  .||+.++++++.+.-+..+|.+.
T Consensus        36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~  115 (450)
T COG1224          36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALT  115 (450)
T ss_pred             EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHH
Confidence            3457889999998865444433222222237999999999999999999999998  89999999999776666666554


Q ss_pred             HH
Q psy16204        296 RL  297 (577)
Q Consensus       296 r~  297 (577)
                      +.
T Consensus       116 qa  117 (450)
T COG1224         116 QA  117 (450)
T ss_pred             HH
Confidence            43

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.00  E-value=7.3e-09  Score=112.39  Aligned_cols=64  Identities=17%  Similarity=0.241  Sum_probs=44.5

Q ss_pred             CCCCccccc-CcHH--HHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCcc
Q psy16204        216 PNVQWNKVA-GLTE--AKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTL  283 (577)
Q Consensus       216 ~~v~~~dIi-G~~~--ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l  283 (577)
                      +..+|++.+ |...  +...+.+....|    ..++.++||||+|+|||.|++++|+++     +..++++++.++
T Consensus       100 ~~~tFdnFv~g~~n~~a~~~~~~~~~~~----~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f  171 (440)
T PRK14088        100 PDYTFENFVVGPGNSFAYHAALEVAKNP----GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF  171 (440)
T ss_pred             CCCcccccccCCchHHHHHHHHHHHhCc----CCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence            445677766 5433  334444444332    235689999999999999999999986     457788887654

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=99.00  E-value=1.5e-09  Score=122.01  Aligned_cols=84  Identities=24%  Similarity=0.237  Sum_probs=65.0

Q ss_pred             cCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe----EEEEecCc------c
Q psy16204        214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT----FFNVSSST------L  283 (577)
Q Consensus       214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~----fv~v~~s~------l  283 (577)
                      +.|...+++|+|+++++..|..++..+       .+++|+||||||||++|+++|+.++..    ++++.-+.      +
T Consensus        11 ~~~~~~~~~viG~~~a~~~l~~a~~~~-------~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~   83 (608)
T TIGR00764        11 PVPERLIDQVIGQEEAVEIIKKAAKQK-------RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRI   83 (608)
T ss_pred             CcchhhHhhccCHHHHHHHHHHHHHcC-------CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHH
Confidence            345578999999999999999988653       389999999999999999999999754    22333222      2


Q ss_pred             ccccccchHHHHHHHHHHhhh
Q psy16204        284 TSKYRGESEKLVRLLFEMVSF  304 (577)
Q Consensus       284 ~~k~~G~~e~~vr~lF~~a~~  304 (577)
                      ...+.|..++.++..|..|..
T Consensus        84 ~~v~~~~g~~~~~~~~~~~~~  104 (608)
T TIGR00764        84 VEVPAGEGREIVEDYKKKAFK  104 (608)
T ss_pred             HHHHHhhchHHHHHHHHHhhc
Confidence            335667888999999987643

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>KOG1969|consensus

Probab=98.99  E-value=4.2e-09  Score=118.89  Aligned_cols=86  Identities=19%  Similarity=0.187  Sum_probs=64.8

Q ss_pred             hhhhhcCCCCCcccccCcHHHHHHHHHHHHC------------------------------cCCCccccceeEEecCCCC
Q psy16204        209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVL------------------------------PTIMPEFFKEALERHSHGT  258 (577)
Q Consensus       209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~------------------------------pl~~~~~~k~ILL~GPpGt  258 (577)
                      +.|+.++.+..|.|+.|-+.+-+++.-.|..                              |..+| ..+-+||+||||-
T Consensus       259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP-~kKilLL~GppGl  337 (877)
T KOG1969|consen  259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRP-PKKILLLCGPPGL  337 (877)
T ss_pred             ceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCC-ccceEEeecCCCC
Confidence            4788899999999999988888777665521                              11111 0145799999999


Q ss_pred             ChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHH
Q psy16204        259 GKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM  301 (577)
Q Consensus       259 GKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~  301 (577)
                      |||+||+.||+.+|..+++|++++-.      +...|++..+.
T Consensus       338 GKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~  374 (877)
T KOG1969|consen  338 GKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIEN  374 (877)
T ss_pred             ChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHH
Confidence            99999999999999999999999863      34555554443

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.98  E-value=8.8e-09  Score=106.07  Aligned_cols=51  Identities=20%  Similarity=0.339  Sum_probs=44.3

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      .|++|+|++.+++.|...+..    ..++..+||+||+|+|||++|+++|+.+-|
T Consensus         2 ~~~~i~g~~~~~~~l~~~~~~----~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c   52 (313)
T PRK05564          2 SFHTIIGHENIKNRIKNSIIK----NRFSHAHIIVGEDGIGKSLLAKEIALKILG   52 (313)
T ss_pred             ChhhccCcHHHHHHHHHHHHc----CCCCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence            589999999999999998843    355578899999999999999999998754

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=98.98  E-value=1.3e-08  Score=113.30  Aligned_cols=63  Identities=19%  Similarity=0.289  Sum_probs=51.7

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHH-----------hCCeEEEEecCccc
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATE-----------CGTTFFNVSSSTLT  284 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~e-----------l~~~fv~v~~s~l~  284 (577)
                      .+++|+|...+.+.+.+.+..--   .....|||+|++||||+++|++|...           .+.||+.++|..+.
T Consensus       217 ~f~~iiG~S~~m~~~~~~i~~~A---~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~  290 (538)
T PRK15424        217 VLGDLLGQSPQMEQVRQTILLYA---RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA  290 (538)
T ss_pred             chhheeeCCHHHHHHHHHHHHHh---CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC
Confidence            57889999999998888874311   12257999999999999999999987           45799999999874

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=98.97  E-value=2.3e-09  Score=112.59  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=35.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      +.|||.||||||||++|+.||+.++.++++|++...++
T Consensus        65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~  102 (327)
T TIGR01650        65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVS  102 (327)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            57999999999999999999999999999999987655

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.96  E-value=9.2e-09  Score=99.34  Aligned_cols=62  Identities=18%  Similarity=0.168  Sum_probs=47.6

Q ss_pred             CCccccc--CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204        218 VQWNKVA--GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT  284 (577)
Q Consensus       218 v~~~dIi--G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~  284 (577)
                      .++++++  +.+.+++.+++.+..     .....++|+||+|||||++|+++++++   +.++++++|..+.
T Consensus        12 ~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~   78 (226)
T TIGR03420        12 PTFDNFYAGGNAELLAALRQLAAG-----KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             hhhcCcCcCCcHHHHHHHHHHHhc-----CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence            3455554  567788888887632     234689999999999999999999887   4688888887653

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=98.96  E-value=5.2e-09  Score=105.52  Aligned_cols=49  Identities=24%  Similarity=0.093  Sum_probs=39.0

Q ss_pred             cccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        222 KVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       222 dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      +++|.+.+...+...+..   ..+.+..+||+||||+|||++|.++|+++.+
T Consensus         2 ~~~~~~~~~~~l~~~~~~---~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~   50 (325)
T COG0470           2 ELVPWQEAVKRLLVQALE---SGRLPHALLFYGPPGVGKTTAALALAKELLC   50 (325)
T ss_pred             CcccchhHHHHHHHHHHh---cCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence            577888888887777742   2234457999999999999999999999873

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.96  E-value=1.3e-08  Score=110.69  Aligned_cols=68  Identities=22%  Similarity=0.190  Sum_probs=45.6

Q ss_pred             CCCCccccc-CcH--HHHHHHHHHHHCcCCC-ccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        216 PNVQWNKVA-GLT--EAKAILQEAMVLPTIM-PEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       216 ~~v~~~dIi-G~~--~ak~~L~e~l~~pl~~-~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      +..+|++.+ |..  .+...+.++...+-.. ...++.++||||+|+|||+|++++++++   +..++++++.++
T Consensus       106 ~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f  180 (445)
T PRK12422        106 PLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF  180 (445)
T ss_pred             ccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH
Confidence            445677665 433  2334555554433211 2345789999999999999999999886   577788877654

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=98.95  E-value=5.1e-08  Score=103.77  Aligned_cols=54  Identities=22%  Similarity=0.124  Sum_probs=47.1

Q ss_pred             CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      .+..+++|+|++.+++.|.+++...    .++.++||+||+|+||+++|.++|+.+-|
T Consensus        14 ~P~~~~~iiGq~~~~~~L~~~~~~~----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc   67 (365)
T PRK07471         14 HPRETTALFGHAAAEAALLDAYRSG----RLHHAWLIGGPQGIGKATLAYRMARFLLA   67 (365)
T ss_pred             CCCchhhccChHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence            4568999999999999999998553    45578999999999999999999999754

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=98.94  E-value=5.3e-10  Score=103.69  Aligned_cols=33  Identities=36%  Similarity=0.449  Sum_probs=24.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      +|||+|+||+|||++|+++|+.++..|.+|.+.
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~t   33 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFT   33 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEEEE--
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeEEEec
Confidence            489999999999999999999999999999885

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=98.93  E-value=1.8e-08  Score=111.86  Aligned_cols=64  Identities=16%  Similarity=0.226  Sum_probs=52.2

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT  284 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~  284 (577)
                      ..+++|+|...+.+.+.+.+..--   .....|||+|++||||+++|++|....   +.||+.++|..+.
T Consensus       209 ~~f~~iiG~S~~m~~~~~~i~~~A---~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~  275 (526)
T TIGR02329       209 YRLDDLLGASAPMEQVRALVRLYA---RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA  275 (526)
T ss_pred             cchhheeeCCHHHHHHHHHHHHHh---CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence            458899999999998888874311   122579999999999999999999875   4799999999774

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=98.93  E-value=1.4e-08  Score=106.03  Aligned_cols=62  Identities=18%  Similarity=0.193  Sum_probs=49.5

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL  283 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l  283 (577)
                      .+++++|...+.+.+.+.+..-.   .....|||+|++||||+.+|++|.....   .||+.++|..+
T Consensus         4 ~~~~liG~S~~~~~~~~~i~~~a---~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~   68 (326)
T PRK11608          4 YKDNLLGEANSFLEVLEQVSRLA---PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL   68 (326)
T ss_pred             ccCccEECCHHHHHHHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCC
Confidence            35678999988888888774422   1225799999999999999999997654   69999999976

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=98.92  E-value=3.6e-08  Score=108.48  Aligned_cols=63  Identities=16%  Similarity=0.227  Sum_probs=52.0

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT  284 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~  284 (577)
                      ...+|+|...+.+.+.+.+..--   .....|||+|++||||+.+|++|....   +.+|+.|+|..+.
T Consensus       185 ~~~~iig~s~~~~~~~~~i~~~a---~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~  250 (509)
T PRK05022        185 KEGEMIGQSPAMQQLKKEIEVVA---ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP  250 (509)
T ss_pred             cCCceeecCHHHHHHHHHHHHHh---CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC
Confidence            56789999999998888885421   223579999999999999999999885   4799999999774

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.91  E-value=8.3e-09  Score=87.67  Aligned_cols=38  Identities=29%  Similarity=0.400  Sum_probs=32.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCe---EEEEecCcccc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTT---FFNVSSSTLTS  285 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~---fv~v~~s~l~~  285 (577)
                      ..++|+||||||||++++.+|..+...   ++++++.....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~   43 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE   43 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence            468999999999999999999999875   88888876543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.90  E-value=4.2e-08  Score=95.86  Aligned_cols=64  Identities=17%  Similarity=0.183  Sum_probs=47.1

Q ss_pred             CCCCccccc--CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        216 PNVQWNKVA--GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       216 ~~v~~~dIi--G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      ++.++++++  +.+.+...+++....    ......++|+||+|||||+||+++++++   +.+++++++.++
T Consensus        13 ~~~~~d~f~~~~~~~~~~~l~~~~~~----~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~   81 (227)
T PRK08903         13 PPPTFDNFVAGENAELVARLRELAAG----PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP   81 (227)
T ss_pred             ChhhhcccccCCcHHHHHHHHHHHhc----cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence            345677766  446777777776642    1223579999999999999999999876   567888887653

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.88  E-value=2.1e-08  Score=95.39  Aligned_cols=53  Identities=13%  Similarity=0.191  Sum_probs=40.1

Q ss_pred             CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcc
Q psy16204        415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVV  485 (577)
Q Consensus       415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~  485 (577)
                      ...||||||+|.+..            ..++.||..|+...      +++++|.+||.++.|++++..+..
T Consensus        96 ~~kviiide~~~l~~------------~~~~~Ll~~le~~~------~~~~~il~~~~~~~l~~~i~sr~~  148 (188)
T TIGR00678        96 GRRVVIIEDAERMNE------------AAANALLKTLEEPP------PNTLFILITPSPEKLLPTIRSRCQ  148 (188)
T ss_pred             CeEEEEEechhhhCH------------HHHHHHHHHhcCCC------CCeEEEEEECChHhChHHHHhhcE
Confidence            456999999999865            34678999998744      345677777888889888887664

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=98.88  E-value=8.1e-09  Score=108.76  Aligned_cols=52  Identities=21%  Similarity=0.259  Sum_probs=43.1

Q ss_pred             CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ....|++|+|++++++.|.-++..+-     ..++||+|+||||||++||++|.-+.
T Consensus         3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~-----~~~vLl~G~pG~gKT~lar~la~llP   54 (334)
T PRK13407          3 KPFPFSAIVGQEEMKQAMVLTAIDPG-----IGGVLVFGDRGTGKSTAVRALAALLP   54 (334)
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHhccC-----CCcEEEEcCCCCCHHHHHHHHHHHCC
Confidence            34679999999999998887664321     14799999999999999999999983

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=98.86  E-value=1.6e-08  Score=102.73  Aligned_cols=69  Identities=25%  Similarity=0.270  Sum_probs=55.9

Q ss_pred             cCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      ....+.+++++|.+..|+.|.+-...-+. .....++||||++|||||+++|++..++   |..++.|...++
T Consensus        20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~-G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L   91 (249)
T PF05673_consen   20 HPDPIRLDDLIGIERQKEALIENTEQFLQ-GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL   91 (249)
T ss_pred             CCCCCCHHHhcCHHHHHHHHHHHHHHHHc-CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence            44568899999999999999887754332 3345789999999999999999999876   567788877665

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=98.86  E-value=4.4e-08  Score=108.27  Aligned_cols=66  Identities=15%  Similarity=0.209  Sum_probs=51.3

Q ss_pred             CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccc
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLT  284 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~  284 (577)
                      ....+++++|...+.+.+.+.+..-   ......|||+|++||||+++|+++.....   .||+.++|+.+.
T Consensus       199 ~~~~f~~~ig~s~~~~~~~~~~~~~---A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~  267 (520)
T PRK10820        199 DDSAFSQIVAVSPKMRQVVEQARKL---AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP  267 (520)
T ss_pred             ccccccceeECCHHHHHHHHHHHHH---hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence            4568999999998877777666321   11224699999999999999999987653   699999999764

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=98.85  E-value=2.4e-08  Score=106.56  Aligned_cols=81  Identities=25%  Similarity=0.219  Sum_probs=56.5

Q ss_pred             cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC--CeEEEEecCccccccccchHHHHHH
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEKLVRL  297 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l~~k~~G~~e~~vr~  297 (577)
                      -+.++||.+|++..--.+.+-....---+++||.||||||||.||-++|+++|  +||+.++++++.+.-+..+|. +.+
T Consensus        23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~-L~q  101 (398)
T PF06068_consen   23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEA-LTQ  101 (398)
T ss_dssp             ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHH-HHH
T ss_pred             cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHH-HHH
Confidence            46899999999877665544222222237899999999999999999999998  899999999997765555554 445


Q ss_pred             HHHH
Q psy16204        298 LFEM  301 (577)
Q Consensus       298 lF~~  301 (577)
                      .|..
T Consensus       102 a~Rr  105 (398)
T PF06068_consen  102 AFRR  105 (398)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            5653

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.85  E-value=3.4e-08  Score=111.15  Aligned_cols=67  Identities=25%  Similarity=0.337  Sum_probs=45.4

Q ss_pred             CCCCccccc-CcHH--HHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCcccc
Q psy16204        216 PNVQWNKVA-GLTE--AKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTLTS  285 (577)
Q Consensus       216 ~~v~~~dIi-G~~~--ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l~~  285 (577)
                      +..+|++++ |...  +...+..++..+   ...++.++|||++|+|||.|+.+|++++     +..++++++.++.+
T Consensus       283 ~~~TFDnFvvG~sN~~A~aaa~avae~~---~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~  357 (617)
T PRK14086        283 PKYTFDTFVIGASNRFAHAAAVAVAEAP---AKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN  357 (617)
T ss_pred             CCCCHhhhcCCCccHHHHHHHHHHHhCc---cccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence            345677765 4332  333444444332   2234569999999999999999999987     46788888876643

>PRK06893 DNA replication initiation factor; Validated

Probab=98.85  E-value=6.1e-08  Score=96.06  Aligned_cols=53  Identities=13%  Similarity=0.023  Sum_probs=34.4

Q ss_pred             CCCCCcccccCcHHHHHHHHHHHHCcCCCcccc-ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+..++++++|..... .+..+.....   ... ..++||||||||||.|+.++|+++
T Consensus        10 ~~~~~fd~f~~~~~~~-~~~~~~~~~~---~~~~~~l~l~G~~G~GKThL~~ai~~~~   63 (229)
T PRK06893         10 IDDETLDNFYADNNLL-LLDSLRKNFI---DLQQPFFYIWGGKSSGKSHLLKAVSNHY   63 (229)
T ss_pred             CCcccccccccCChHH-HHHHHHHHhh---ccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3456888888765432 1221111111   112 357999999999999999999986

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=98.85  E-value=5.6e-09  Score=103.50  Aligned_cols=46  Identities=33%  Similarity=0.368  Sum_probs=38.6

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +|++|+||+.+|..|.-+....       .++||+||||||||++|+++..-+
T Consensus         1 Df~dI~GQe~aKrAL~iAAaG~-------h~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen    1 DFSDIVGQEEAKRALEIAAAGG-------HHLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             -TCCSSSTHHHHHHHHHHHHCC---------EEEES-CCCTHHHHHHHHHHCS
T ss_pred             ChhhhcCcHHHHHHHHHHHcCC-------CCeEEECCCCCCHHHHHHHHHHhC
Confidence            4789999999999999998763       599999999999999999999764

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=98.85  E-value=2e-07  Score=98.79  Aligned_cols=54  Identities=24%  Similarity=0.233  Sum_probs=47.3

Q ss_pred             CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      .+..+++|+|++++++.|..++...    ..+..+||+||+|+|||++|+.+|+.+.+
T Consensus        18 ~P~~~~~l~Gh~~a~~~L~~a~~~g----rl~ha~L~~G~~G~GKttlA~~lA~~Llc   71 (351)
T PRK09112         18 SPSENTRLFGHEEAEAFLAQAYREG----KLHHALLFEGPEGIGKATLAFHLANHILS   71 (351)
T ss_pred             CCCchhhccCcHHHHHHHHHHHHcC----CCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence            4467899999999999999998543    45578999999999999999999999876

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=98.82  E-value=9.4e-08  Score=108.60  Aligned_cols=63  Identities=16%  Similarity=0.271  Sum_probs=51.3

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      ..+++++|...+.+.+.+.+..-.   .....|||+|++|||||++|++|....   +.+|+.++|..+
T Consensus       373 ~~~~~liG~S~~~~~~~~~~~~~a---~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~  438 (686)
T PRK15429        373 SEFGEIIGRSEAMYSVLKQVEMVA---QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAM  438 (686)
T ss_pred             ccccceeecCHHHHHHHHHHHHHh---CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccC
Confidence            567899999999998887775321   122479999999999999999999865   479999999876

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=98.81  E-value=2e-08  Score=106.54  Aligned_cols=51  Identities=20%  Similarity=0.244  Sum_probs=44.2

Q ss_pred             CCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       217 ~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ...|++|+||+++|..|.-.+..|.     ..++||.|++|||||++||++++.+.
T Consensus        13 ~~pf~~ivGq~~~k~al~~~~~~p~-----~~~vli~G~~GtGKs~~ar~~~~~l~   63 (350)
T CHL00081         13 VFPFTAIVGQEEMKLALILNVIDPK-----IGGVMIMGDRGTGKSTTIRALVDLLP   63 (350)
T ss_pred             CCCHHHHhChHHHHHHHHHhccCCC-----CCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence            3479999999999999998887653     25899999999999999999988774

>PRK13531 regulatory ATPase RavA; Provisional

Probab=98.81  E-value=3.6e-08  Score=108.41  Aligned_cols=55  Identities=11%  Similarity=0.062  Sum_probs=44.0

Q ss_pred             cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC--eEEEEecC
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT--TFFNVSSS  281 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~--~fv~v~~s  281 (577)
                      -+.|+|++++++.+..++...       .+|||+||||||||++|++||..++.  +|..+.+.
T Consensus        19 ~~~i~gre~vI~lll~aalag-------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~   75 (498)
T PRK13531         19 EKGLYERSHAIRLCLLAALSG-------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR   75 (498)
T ss_pred             hhhccCcHHHHHHHHHHHccC-------CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeee
Confidence            367899999999988888432       47999999999999999999998753  55555443

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.80  E-value=2.7e-08  Score=105.88  Aligned_cols=83  Identities=13%  Similarity=0.003  Sum_probs=67.5

Q ss_pred             Ccc-cccCcHHHHHHHHHHHHCcCCCcc-ccceeEEecCCCCChHHHHHHHHHHhCC-------eEEEEec----Ccccc
Q psy16204        219 QWN-KVAGLTEAKAILQEAMVLPTIMPE-FFKEALERHSHGTGKTMLAKAVATECGT-------TFFNVSS----STLTS  285 (577)
Q Consensus       219 ~~~-dIiG~~~ak~~L~e~l~~pl~~~~-~~k~ILL~GPpGtGKT~LAkaLA~el~~-------~fv~v~~----s~l~~  285 (577)
                      -|+ +++|++++++.|.+++........ ..+.++|+||||+|||+||++||+.++.       +++.+..    |...+
T Consensus        48 ~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e  127 (361)
T smart00763       48 FFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHE  127 (361)
T ss_pred             ccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCcc
Confidence            355 899999999999999865443222 2356899999999999999999999986       9999998    77777


Q ss_pred             ccccchHHHHHHHHHH
Q psy16204        286 KYRGESEKLVRLLFEM  301 (577)
Q Consensus       286 k~~G~~e~~vr~lF~~  301 (577)
                      ...+.....+|..|..
T Consensus       128 ~Pl~l~p~~~r~~~~~  143 (361)
T smart00763      128 DPLHLFPDELREDLED  143 (361)
T ss_pred             CCcccCCHHHHHHHHH
Confidence            7777777888877754

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=98.80  E-value=1.9e-08  Score=113.74  Aligned_cols=47  Identities=26%  Similarity=0.307  Sum_probs=41.0

Q ss_pred             cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      |.+|+||+.++..|.-++..|-     ..+|||+|++|||||++|++|++.+
T Consensus         3 f~~ivGq~~~~~al~~~av~~~-----~g~vli~G~~GtgKs~lar~l~~~l   49 (633)
T TIGR02442         3 FTAIVGQEDLKLALLLNAVDPR-----IGGVLIRGEKGTAKSTAARGLAALL   49 (633)
T ss_pred             cchhcChHHHHHHHHHHhhCCC-----CCeEEEEcCCCCcHHHHHHHHHHhC
Confidence            6799999999998887776552     1479999999999999999999987

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=98.80  E-value=5.6e-08  Score=109.28  Aligned_cols=65  Identities=15%  Similarity=0.122  Sum_probs=51.7

Q ss_pred             CCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccc
Q psy16204        217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLT  284 (577)
Q Consensus       217 ~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~  284 (577)
                      ...+++++|.+.+.+.+.+.+..-..   ....|||+|++||||+++|++|.....   .||+.|+|..+.
T Consensus       321 ~~~~~~l~g~s~~~~~~~~~~~~~a~---~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~  388 (638)
T PRK11388        321 SHTFDHMPQDSPQMRRLIHFGRQAAK---SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYP  388 (638)
T ss_pred             cccccceEECCHHHHHHHHHHHHHhC---cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCC
Confidence            45689999999888877776643221   224699999999999999999998764   799999999763

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1.3e-07  Score=108.65  Aligned_cols=88  Identities=19%  Similarity=0.297  Sum_probs=68.3

Q ss_pred             hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEE
Q psy16204        209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNV  278 (577)
Q Consensus       209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v  278 (577)
                      .+..+....-.++-|||.++.++++.+.|.....     ++-+|.|+||||||.++..+|...          +..++.+
T Consensus       158 ~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~K-----NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL  232 (786)
T COG0542         158 RDLTELAREGKLDPVIGRDEEIRRTIQILSRRTK-----NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL  232 (786)
T ss_pred             hhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCC-----CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence            3444555667899999999999999999865432     466899999999999999999775          3567777


Q ss_pred             ecCcccc--ccccchHHHHHHHHHH
Q psy16204        279 SSSTLTS--KYRGESEKLVRLLFEM  301 (577)
Q Consensus       279 ~~s~l~~--k~~G~~e~~vr~lF~~  301 (577)
                      +.+.+..  +|.|++|..++.+.+.
T Consensus       233 D~g~LvAGakyRGeFEeRlk~vl~e  257 (786)
T COG0542         233 DLGSLVAGAKYRGEFEERLKAVLKE  257 (786)
T ss_pred             cHHHHhccccccCcHHHHHHHHHHH
Confidence            7777654  7888888777766665

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=98.79  E-value=2.9e-07  Score=104.43  Aligned_cols=54  Identities=30%  Similarity=0.337  Sum_probs=46.7

Q ss_pred             hcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      ...++..|++|+|++++++.|..++..+       ..+||+||||||||++|+++++.+.+
T Consensus        23 ~~~~~~~~~~vigq~~a~~~L~~~~~~~-------~~~l~~G~~G~GKttla~~l~~~l~~   76 (637)
T PRK13765         23 IEVPERLIDQVIGQEHAVEVIKKAAKQR-------RHVMMIGSPGTGKSMLAKAMAELLPK   76 (637)
T ss_pred             cccCcccHHHcCChHHHHHHHHHHHHhC-------CeEEEECCCCCcHHHHHHHHHHHcCh
Confidence            3456689999999999999999988653       37999999999999999999998763

>PHA02244 ATPase-like protein

Probab=98.77  E-value=2.9e-07  Score=98.61  Aligned_cols=33  Identities=18%  Similarity=0.367  Sum_probs=30.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSS  280 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~  280 (577)
                      ..|||+||||||||++|++||..++.+|+.++.
T Consensus       120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~  152 (383)
T PHA02244        120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA  152 (383)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence            479999999999999999999999999999873

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=98.73  E-value=1.5e-07  Score=101.14  Aligned_cols=62  Identities=16%  Similarity=0.171  Sum_probs=48.6

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL  283 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l  283 (577)
                      .+.+++|...+.+.+.+.+..-.   .....+|+.|++|||||++|++|+....   .+|+.++|+.+
T Consensus       136 ~~~~lig~s~~~~~l~~~~~~~~---~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~  200 (469)
T PRK10923        136 PTTDIIGEAPAMQDVFRIIGRLS---RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAI  200 (469)
T ss_pred             ccccceecCHHHHHHHHHHHHHh---ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCC
Confidence            35678998888877777664211   1124699999999999999999998864   69999999877

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=98.71  E-value=1.1e-07  Score=89.90  Aligned_cols=45  Identities=24%  Similarity=0.211  Sum_probs=36.4

Q ss_pred             CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        225 GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       225 G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      |++++++.|...+..    ..++..+||+||+|+||+++|+++|+.+-+
T Consensus         1 gq~~~~~~L~~~~~~----~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~   45 (162)
T PF13177_consen    1 GQEEIIELLKNLIKS----GRLPHALLFHGPSGSGKKTLALAFARALLC   45 (162)
T ss_dssp             S-HHHHHHHHHHHHC----TC--SEEEEECSTTSSHHHHHHHHHHHHC-
T ss_pred             CcHHHHHHHHHHHHc----CCcceeEEEECCCCCCHHHHHHHHHHHHcC
Confidence            789999999998854    356678999999999999999999998754

...

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=3.9e-07  Score=99.65  Aligned_cols=47  Identities=32%  Similarity=0.310  Sum_probs=41.8

Q ss_pred             CCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHH
Q psy16204        217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       217 ~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      ..++.||+||+.+|+.|..+....       +++||+||||||||+||+.+..-
T Consensus       175 ~~D~~DV~GQ~~AKrAleiAAAGg-------HnLl~~GpPGtGKTmla~Rl~~l  221 (490)
T COG0606         175 APDFKDVKGQEQAKRALEIAAAGG-------HNLLLVGPPGTGKTMLASRLPGL  221 (490)
T ss_pred             CcchhhhcCcHHHHHHHHHHHhcC-------CcEEEecCCCCchHHhhhhhccc
Confidence            458999999999999999998654       68999999999999999988754

>PRK15115 response regulator GlrR; Provisional

Probab=98.69  E-value=3.6e-07  Score=97.50  Aligned_cols=59  Identities=20%  Similarity=0.240  Sum_probs=42.4

Q ss_pred             cccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204        222 KVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL  283 (577)
Q Consensus       222 dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l  283 (577)
                      .++|.......+.+.+..-.   ..-..++++|++|||||++|+++.....   .+|+.++|..+
T Consensus       135 ~lig~s~~~~~~~~~~~~~a---~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~  196 (444)
T PRK15115        135 AIVTRSPLMLRLLEQARMVA---QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGAL  196 (444)
T ss_pred             cccccCHHHHHHHHHHHhhc---cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCC
Confidence            46666655554444432211   1123689999999999999999998864   79999999976

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.68  E-value=1.8e-06  Score=86.02  Aligned_cols=61  Identities=16%  Similarity=0.086  Sum_probs=42.0

Q ss_pred             CCCCccccc--CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecC
Q psy16204        216 PNVQWNKVA--GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSS  281 (577)
Q Consensus       216 ~~v~~~dIi--G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s  281 (577)
                      +..++++.+  +...+...+......+-     ...++||||+|||||+|++++++++.   ..+.+++..
T Consensus        17 ~~~~fd~f~~~~n~~a~~~l~~~~~~~~-----~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~   82 (235)
T PRK08084         17 DDETFASFYPGDNDSLLAALQNALRQEH-----SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD   82 (235)
T ss_pred             CcCCccccccCccHHHHHHHHHHHhCCC-----CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence            344667666  45667777777654331     24799999999999999999998764   334454443

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=98.68  E-value=8.9e-08  Score=100.08  Aligned_cols=51  Identities=20%  Similarity=0.229  Sum_probs=43.4

Q ss_pred             CcccccC-cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        219 QWNKVAG-LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       219 ~~~dIiG-~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      .|+.|+| ++.+++.|...+..    ..++..+||+||+|+|||++|+++|+.+-+
T Consensus         3 ~~~~i~~~q~~~~~~L~~~~~~----~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c   54 (329)
T PRK08058          3 TWEQLTALQPVVVKMLQNSIAK----NRLSHAYLFEGAKGTGKKATALWLAKSLFC   54 (329)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHc----CCCCceEEEECCCCCCHHHHHHHHHHHHCC
Confidence            4788888 88899999998843    456678899999999999999999999755

>KOG1942|consensus

Probab=98.68  E-value=3.8e-07  Score=95.09  Aligned_cols=84  Identities=24%  Similarity=0.150  Sum_probs=57.9

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC--CeEEEEecCccccccccchHHHHH
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEKLVR  296 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l~~k~~G~~e~~vr  296 (577)
                      .-..++||..|.+..--.+.+-.....--+++||.||||||||.||-+|++++|  .||.-+.++++.+.-+-.+|-+ -
T Consensus        36 ~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEvL-m  114 (456)
T KOG1942|consen   36 VAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEVL-M  114 (456)
T ss_pred             cccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHHH-H
Confidence            456789999998865444332111122236899999999999999999999997  7999888988866544444433 3


Q ss_pred             HHHHHhh
Q psy16204        297 LLFEMVS  303 (577)
Q Consensus       297 ~lF~~a~  303 (577)
                      +-|..|+
T Consensus       115 enfRRaI  121 (456)
T KOG1942|consen  115 ENFRRAI  121 (456)
T ss_pred             HHHHHHh
Confidence            3444443

>TIGR00368 Mg chelatase-related protein

Probab=98.68  E-value=1.3e-07  Score=104.45  Aligned_cols=95  Identities=16%  Similarity=0.157  Sum_probs=64.2

Q ss_pred             CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC-------CCcCCCceEEEEEecCCc------h-------
Q psy16204        415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-------SSLYEDKIIMILAATNHP------Y-------  474 (577)
Q Consensus       415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~-------~~~~~~~~VlIIatTN~p------~-------  474 (577)
                      ...|||||||+.+..            .++..|++.|+.-.       .......++.+|+|+|.-      +       
T Consensus       295 ~~GvLfLDEi~e~~~------------~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c  362 (499)
T TIGR00368       295 HNGVLFLDELPEFKR------------SVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRC  362 (499)
T ss_pred             CCCeEecCChhhCCH------------HHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccC
Confidence            446999999998754            56777887776422       111123568999999852      1       


Q ss_pred             ----------hhHHHhhcCccccc---ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy16204        475 ----------QLLTLCLEGVVIDV---NLDFHKISKMLEGYTGSDIANLARDAAMMSIRR  521 (577)
Q Consensus       475 ----------~L~~allrr~~i~~---~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr  521 (577)
                                .|-..+++||.+..   +++...|.+...|-+-+++..-+..|-.....|
T Consensus       363 ~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R  422 (499)
T TIGR00368       363 SPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIR  422 (499)
T ss_pred             CHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence                      26777888887653   345667776667778888888877775555555

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=98.68  E-value=9.5e-08  Score=99.74  Aligned_cols=52  Identities=15%  Similarity=0.138  Sum_probs=45.4

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .|++|+|++.+++.|..++...    .++.++||+||+|+||+.+|+++|+.+-+.
T Consensus         2 ~f~~iiGq~~~~~~L~~~i~~~----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~   53 (314)
T PRK07399          2 LFANLIGQPLAIELLTAAIKQN----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQ   53 (314)
T ss_pred             cHHHhCCHHHHHHHHHHHHHhC----CCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            5889999999999999998543    455799999999999999999999997553

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=98.68  E-value=9e-08  Score=101.05  Aligned_cols=47  Identities=23%  Similarity=0.328  Sum_probs=40.7

Q ss_pred             cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      |..|+|++++|..|.-.+..|-     ..++||.|++|+|||+++|+++..+
T Consensus         3 f~~ivgq~~~~~al~~~~~~~~-----~g~vli~G~~G~gKttl~r~~~~~~   49 (337)
T TIGR02030         3 FTAIVGQDEMKLALLLNVIDPK-----IGGVMVMGDRGTGKSTAVRALAALL   49 (337)
T ss_pred             ccccccHHHHHHHHHHHhcCCC-----CCeEEEEcCCCCCHHHHHHHHHHhh
Confidence            6789999999998877775542     2479999999999999999999887

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PRK05642 DNA replication initiation factor; Validated

Probab=98.67  E-value=8.1e-07  Score=88.60  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=30.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT  284 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~  284 (577)
                      ..++||||+|||||.|++++++++   +..++++++.++.
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~   85 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL   85 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence            678999999999999999999765   4667777776553

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=98.64  E-value=5.4e-07  Score=96.20  Aligned_cols=62  Identities=15%  Similarity=0.130  Sum_probs=48.0

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL  283 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l  283 (577)
                      .+.+++|.....+.+.+.+..- .  .....++++|++||||+.+|+++.....   .+|+.++|..+
T Consensus       137 ~~~~lig~s~~~~~l~~~i~~~-a--~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~  201 (445)
T TIGR02915       137 ALRGLITSSPGMQKICRTIEKI-A--PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAI  201 (445)
T ss_pred             cccceeecCHHHHHHHHHHHHH-h--CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCC
Confidence            3457888888888777766421 1  1124689999999999999999998764   69999999976

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.64  E-value=2e-06  Score=85.24  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=22.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .++|+||+|+|||++++.++..+.
T Consensus        45 ~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        45 FILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcC
Confidence            588999999999999999999876

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=98.63  E-value=5.2e-07  Score=96.34  Aligned_cols=63  Identities=21%  Similarity=0.274  Sum_probs=45.9

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT  284 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~  284 (577)
                      .+..++|.......+.+.+..-.   ..-..+|++|++||||+++|+++....   +.+|+.++|..+.
T Consensus       141 ~~~~ii~~S~~~~~~~~~~~~~a---~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~  206 (457)
T PRK11361        141 QWGHILTNSPAMMDICKDTAKIA---LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALP  206 (457)
T ss_pred             cccceecccHHHhHHHHHHHHHc---CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCC
Confidence            34567887766666655542211   112479999999999999999998875   4799999999763

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.61  E-value=1.1e-06  Score=96.10  Aligned_cols=64  Identities=19%  Similarity=0.158  Sum_probs=43.2

Q ss_pred             CCccccc-Cc--HHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCccc
Q psy16204        218 VQWNKVA-GL--TEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTLT  284 (577)
Q Consensus       218 v~~~dIi-G~--~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l~  284 (577)
                      .+|++.+ |.  ..+...+..+...|   ...++.++|||++|+|||.|++++++++     +..++++++.++.
T Consensus       112 ~tFdnFv~g~~n~~A~~aa~~~a~~~---~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~  183 (450)
T PRK14087        112 NTFENFVIGSSNEQAFIAVQTVSKNP---GISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA  183 (450)
T ss_pred             cchhcccCCCcHHHHHHHHHHHHhCc---CcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence            4555554 33  22444555544332   2345679999999999999999999965     3677888887654

>PRK04132 replication factor C small subunit; Provisional

Probab=98.61  E-value=1.2e-06  Score=101.92  Aligned_cols=51  Identities=18%  Similarity=0.231  Sum_probs=41.4

Q ss_pred             CeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCc
Q psy16204        416 PSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGV  484 (577)
Q Consensus       416 p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~  484 (577)
                      ..||||||+|.|..            ..++.|+..|+...      .++.+|++||.+..|++.+..|.
T Consensus       631 ~KVvIIDEaD~Lt~------------~AQnALLk~lEep~------~~~~FILi~N~~~kIi~tIrSRC  681 (846)
T PRK04132        631 FKIIFLDEADALTQ------------DAQQALRRTMEMFS------SNVRFILSCNYSSKIIEPIQSRC  681 (846)
T ss_pred             CEEEEEECcccCCH------------HHHHHHHHHhhCCC------CCeEEEEEeCChhhCchHHhhhc
Confidence            35999999999965            45899999999765      34789999999999887766554

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.60  E-value=3.5e-06  Score=88.02  Aligned_cols=58  Identities=21%  Similarity=0.209  Sum_probs=39.6

Q ss_pred             cccCcHHHHH---HHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---------CeEEEEecC
Q psy16204        222 KVAGLTEAKA---ILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---------TTFFNVSSS  281 (577)
Q Consensus       222 dIiG~~~ak~---~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s  281 (577)
                      .-||...+++   .|.+.+..|.  .....++||+|++|.|||++++..+....         +|++.+.+.
T Consensus        35 rWIgY~~A~~~L~~L~~Ll~~P~--~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P  104 (302)
T PF05621_consen   35 RWIGYPRAKEALDRLEELLEYPK--RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP  104 (302)
T ss_pred             CeecCHHHHHHHHHHHHHHhCCc--ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence            3466665555   4555555552  23346899999999999999999997653         455666554

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>KOG0991|consensus

Probab=98.60  E-value=7.7e-08  Score=97.66  Aligned_cols=70  Identities=14%  Similarity=0.070  Sum_probs=56.6

Q ss_pred             hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC-----eEEEEecCcc
Q psy16204        209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT-----TFFNVSSSTL  283 (577)
Q Consensus       209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~-----~fv~v~~s~l  283 (577)
                      ..|+.+|.++.+.||+|.++..+.|.-...-.     -..+++|.||||||||+-+.+||.++=.     .++++++++-
T Consensus        15 l~wVeKYrP~~l~dIVGNe~tv~rl~via~~g-----nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde   89 (333)
T KOG0991|consen   15 LPWVEKYRPSVLQDIVGNEDTVERLSVIAKEG-----NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE   89 (333)
T ss_pred             chHHHhhCchHHHHhhCCHHHHHHHHHHHHcC-----CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence            35889999999999999999999998877432     1237999999999999999999999732     3456666653

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=98.60  E-value=5e-07  Score=94.95  Aligned_cols=53  Identities=13%  Similarity=0.211  Sum_probs=42.3

Q ss_pred             cCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCc
Q psy16204        414 YAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGV  484 (577)
Q Consensus       414 ~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~  484 (577)
                      ....|++|||+|++..            ...|.||..|+.-.      .++++|.+|+.++.|++.++.|.
T Consensus       105 ~~~kv~iI~~a~~m~~------------~aaNaLLK~LEEPp------~~~~fiL~t~~~~~ll~TI~SRc  157 (328)
T PRK05707        105 GGRKVVLIEPAEAMNR------------NAANALLKSLEEPS------GDTVLLLISHQPSRLLPTIKSRC  157 (328)
T ss_pred             CCCeEEEECChhhCCH------------HHHHHHHHHHhCCC------CCeEEEEEECChhhCcHHHHhhc
Confidence            3456999999999976            56899999999865      34788899999999887766543

>smart00350 MCM minichromosome maintenance proteins

Probab=98.56  E-value=9.4e-07  Score=97.63  Aligned_cols=54  Identities=17%  Similarity=0.030  Sum_probs=40.4

Q ss_pred             cccccCcHHHHHHHHHHHHCcCCCc----ccc---ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPTIMP----EFF---KEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl~~~----~~~---k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      --.|.|++.+|..|.-.+.......    ...   .+|||+|+||+|||++||++++....
T Consensus       202 ~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r  262 (509)
T smart00350      202 APSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR  262 (509)
T ss_pred             CccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc
Confidence            3468999999988877775542111    011   26999999999999999999998653

>PRK08727 hypothetical protein; Validated

Probab=98.55  E-value=4e-06  Score=83.52  Aligned_cols=60  Identities=20%  Similarity=0.126  Sum_probs=37.8

Q ss_pred             CCCccccc-CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        217 NVQWNKVA-GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       217 ~v~~~dIi-G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      ..++++.+ |...+...+.....     ......++||||+|||||.|+.+++.++   +...++++..
T Consensus        15 ~~~f~~f~~~~~n~~~~~~~~~~-----~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~   78 (233)
T PRK08727         15 DQRFDSYIAAPDGLLAQLQALAA-----GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ   78 (233)
T ss_pred             cCChhhccCCcHHHHHHHHHHHh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence            34566654 44444444443322     1223569999999999999999998775   3455556543

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=98.54  E-value=1.5e-06  Score=92.29  Aligned_cols=60  Identities=20%  Similarity=0.290  Sum_probs=43.7

Q ss_pred             cccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccc
Q psy16204        222 KVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLT  284 (577)
Q Consensus       222 dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~  284 (577)
                      .++|.......+...+..-   ......++++|.+||||+.+|+++.....   .+|+.++|..+.
T Consensus       140 ~lig~s~~~~~~~~~i~~~---~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~  202 (441)
T PRK10365        140 GMVGKSPAMQHLLSEIALV---APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALN  202 (441)
T ss_pred             ceEecCHHHHHHHHHHhhc---cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCC
Confidence            4666666666665554321   11225799999999999999999987654   799999999763

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=98.48  E-value=2.3e-06  Score=91.68  Aligned_cols=61  Identities=18%  Similarity=0.181  Sum_probs=47.0

Q ss_pred             cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      ...++|...+...+.+.+.. +.  .....+++.|.+||||+++|+++....   +.+|+.++|..+
T Consensus       133 ~~~lig~s~~~~~v~~~i~~-~a--~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~  196 (463)
T TIGR01818       133 SAELIGEAPAMQEVFRAIGR-LS--RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAI  196 (463)
T ss_pred             ccceeecCHHHHHHHHHHHH-Hh--CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCC
Confidence            34688888877777776643 11  112468999999999999999999875   469999999876

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>TIGR00602 rad24 checkpoint protein rad24

Probab=98.48  E-value=6e-07  Score=101.89  Aligned_cols=70  Identities=11%  Similarity=0.057  Sum_probs=55.8

Q ss_pred             HhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      ..+|.+++.+..+++|+|+++.++.|+.++..-......-+.++|+||||||||++++.+|++++..+.+
T Consensus        71 ~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E  140 (637)
T TIGR00602        71 NEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE  140 (637)
T ss_pred             cCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence            3479999999999999999999999998875432211112348999999999999999999998865533

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.48  E-value=1.7e-06  Score=88.25  Aligned_cols=69  Identities=20%  Similarity=0.214  Sum_probs=54.0

Q ss_pred             cCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204        214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL  283 (577)
Q Consensus       214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l  283 (577)
                      ..+.+.+.+|+|.+.+++.|.+-... +.....-++|||||..|+||++|+||+-.+.+   ..+++|+-.++
T Consensus        53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~-F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl  124 (287)
T COG2607          53 DPDPIDLADLVGVDRQKEALVRNTEQ-FAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL  124 (287)
T ss_pred             CCCCcCHHHHhCchHHHHHHHHHHHH-HHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence            34557899999999999998876533 22223347899999999999999999998874   56778877765

>KOG0741|consensus

Probab=98.48  E-value=1.6e-06  Score=95.79  Aligned_cols=148  Identities=21%  Similarity=0.273  Sum_probs=96.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchH----HHHHHHHHHhhhhhccccCcceeeccccCCC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESE----KLVRLLFEMVSFLVGLHSNKTFYLVGVLNGE  323 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e----~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~  323 (577)
                      .++||.||||+|||.||-.+|...+.||+.+=+.+-+   +|-+|    ..++.+|+.                      
T Consensus       539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~~i~k~F~D----------------------  593 (744)
T KOG0741|consen  539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCAHIKKIFED----------------------  593 (744)
T ss_pred             eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHHHHHHHHHH----------------------
Confidence            3689999999999999999999999999998766543   33333    235556654                      


Q ss_pred             CCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhh
Q psy16204        324 PTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRI  403 (577)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  403 (577)
                                                                                                      
T Consensus       594 --------------------------------------------------------------------------------  593 (744)
T KOG0741|consen  594 --------------------------------------------------------------------------------  593 (744)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhh-----HH
Q psy16204        404 NKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQL-----LT  478 (577)
Q Consensus       404 ~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L-----~~  478 (577)
                             |.+..-+||++|+|+.|..--.-++  -.++-++..|+..+.....   ...+.+|++||+....|     ..
T Consensus       594 -------AYkS~lsiivvDdiErLiD~vpIGP--RfSN~vlQaL~VllK~~pp---kg~kLli~~TTS~~~vL~~m~i~~  661 (744)
T KOG0741|consen  594 -------AYKSPLSIIVVDDIERLLDYVPIGP--RFSNLVLQALLVLLKKQPP---KGRKLLIFGTTSRREVLQEMGILD  661 (744)
T ss_pred             -------hhcCcceEEEEcchhhhhcccccCc--hhhHHHHHHHHHHhccCCC---CCceEEEEecccHHHHHHHcCHHH
Confidence                   6666778999999998875321111  2344566666666665543   34678888888876543     22


Q ss_pred             HhhcCccccccc----CHHHHHHHcCCCCHHHHHHHHHH
Q psy16204        479 LCLEGVVIDVNL----DFHKISKMLEGYTGSDIANLARD  513 (577)
Q Consensus       479 allrr~~i~~~v----dl~~LA~~t~G~sgsDI~~l~~~  513 (577)
                      .+.....+. ++    ++.++-..+.-|+..++..+...
T Consensus       662 ~F~~~i~Vp-nl~~~~~~~~vl~~~n~fsd~~~~~~~~~  699 (744)
T KOG0741|consen  662 CFSSTIHVP-NLTTGEQLLEVLEELNIFSDDEVRAIAEQ  699 (744)
T ss_pred             hhhheeecC-ccCchHHHHHHHHHccCCCcchhHHHHHH
Confidence            222222111 11    45566666677887777666544

>PRK12377 putative replication protein; Provisional

Probab=98.47  E-value=1.2e-06  Score=88.89  Aligned_cols=57  Identities=19%  Similarity=0.126  Sum_probs=40.4

Q ss_pred             CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204        225 GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT  284 (577)
Q Consensus       225 G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~  284 (577)
                      |+..++..+..++..-..   -..+++|+||||||||.||.+||+++   +..++++...+++
T Consensus        82 ~~~~a~~~a~~~a~~~~~---~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~  141 (248)
T PRK12377         82 GQRYALSQAKSIADELMT---GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVM  141 (248)
T ss_pred             hHHHHHHHHHHHHHHHHh---cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHH
Confidence            555566666666543211   23689999999999999999999987   4566667666543

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.45  E-value=1.8e-06  Score=85.53  Aligned_cols=66  Identities=24%  Similarity=0.319  Sum_probs=45.6

Q ss_pred             CCCCccccc-C--cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCccc
Q psy16204        216 PNVQWNKVA-G--LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTLT  284 (577)
Q Consensus       216 ~~v~~~dIi-G--~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l~  284 (577)
                      ++-+|++.+ |  .+.+...+......+-   ..+..++||||+|+|||.|..++++++     +..++++++.++.
T Consensus         3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~   76 (219)
T PF00308_consen    3 PKYTFDNFVVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFI   76 (219)
T ss_dssp             TT-SCCCS--TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHH
T ss_pred             CCCccccCCcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHH
Confidence            456777774 5  4555555555554432   244678999999999999999999875     4678888887654

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK06620 hypothetical protein; Validated

Probab=98.42  E-value=3.1e-06  Score=83.80  Aligned_cols=57  Identities=14%  Similarity=0.049  Sum_probs=36.9

Q ss_pred             CCCCcccccCc---HHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        216 PNVQWNKVAGL---TEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       216 ~~v~~~dIiG~---~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      +..++++++--   ..+...+++....+-.. .....++||||||||||+|++++++..+.
T Consensus        11 ~~~tfd~Fvvg~~N~~a~~~~~~~~~~~~~~-~~~~~l~l~Gp~G~GKThLl~a~~~~~~~   70 (214)
T PRK06620         11 SKYHPDEFIVSSSNDQAYNIIKNWQCGFGVN-PYKFTLLIKGPSSSGKTYLTKIWQNLSNA   70 (214)
T ss_pred             CCCCchhhEecccHHHHHHHHHHHHHccccC-CCcceEEEECCCCCCHHHHHHHHHhccCC
Confidence            44466665433   34555666554322111 11257999999999999999999988765

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.42  E-value=2e-06  Score=75.76  Aligned_cols=36  Identities=22%  Similarity=0.261  Sum_probs=29.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh--------CCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC--------GTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el--------~~~fv~v~~s~l  283 (577)
                      +.++++|++|+|||++++.+++.+        ..+++.+++...
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   48 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSS   48 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCC
Confidence            458999999999999999999998        788888888754

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=98.39  E-value=8.8e-07  Score=99.69  Aligned_cols=61  Identities=15%  Similarity=0.189  Sum_probs=45.1

Q ss_pred             CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC-------CCcCCCceEEEEEecCCch---hhHHHhhcCc
Q psy16204        415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-------SSLYEDKIIMILAATNHPY---QLLTLCLEGV  484 (577)
Q Consensus       415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~-------~~~~~~~~VlIIatTN~p~---~L~~allrr~  484 (577)
                      +..|||||||+.+.+            .+++.|++.|+.-.       .......++.||||+|..+   .|...++.||
T Consensus        84 ~~GvL~lDEi~rl~~------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf  151 (589)
T TIGR02031        84 PRGVLYVDMANLLDD------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRL  151 (589)
T ss_pred             CCCcEeccchhhCCH------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhc
Confidence            346999999999976            67888999887422       1112335688999999876   5888899988


Q ss_pred             ccc
Q psy16204        485 VID  487 (577)
Q Consensus       485 ~i~  487 (577)
                      .+.
T Consensus       152 ~l~  154 (589)
T TIGR02031       152 ALH  154 (589)
T ss_pred             cCe
Confidence            773

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PRK08116 hypothetical protein; Validated

Probab=98.39  E-value=9.5e-07  Score=90.21  Aligned_cols=60  Identities=30%  Similarity=0.211  Sum_probs=41.3

Q ss_pred             CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204        225 GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT  284 (577)
Q Consensus       225 G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~  284 (577)
                      +...++..+.+++..-........+++|||++|||||.||.+||+++   +.++++++..+++
T Consensus        92 ~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll  154 (268)
T PRK08116         92 GSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL  154 (268)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            34445566666654211111122479999999999999999999986   6788888876653

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.38  E-value=1.1e-05  Score=89.62  Aligned_cols=48  Identities=27%  Similarity=0.177  Sum_probs=38.3

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ..+.++.|+..+++.+.-.+..       -..++|+||||+|||++++.|+..+.
T Consensus       188 ~d~~~v~Gq~~~~~al~laa~~-------G~~llliG~~GsGKTtLak~L~gllp  235 (506)
T PRK09862        188 HDLSDVIGQEQGKRGLEITAAG-------GHNLLLIGPPGTGKTMLASRINGLLP  235 (506)
T ss_pred             cCeEEEECcHHHHhhhheeccC-------CcEEEEECCCCCcHHHHHHHHhccCC
Confidence            4788999999888876544421       25799999999999999999997653

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=98.37  E-value=1.1e-06  Score=93.05  Aligned_cols=69  Identities=10%  Similarity=0.020  Sum_probs=48.8

Q ss_pred             CcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhH
Q psy16204        398 GHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLL  477 (577)
Q Consensus       398 ~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~  477 (577)
                      ++...+.+.+-........-|++||++|.+..            ...|.||..++.-.      .++++|.+|+.|+.|+
T Consensus       115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~------------~AaNaLLKtLEEPp------~~t~fiL~t~~~~~LL  176 (342)
T PRK06964        115 EQVRALLDFCGVGTHRGGARVVVLYPAEALNV------------AAANALLKTLEEPP------PGTVFLLVSARIDRLL  176 (342)
T ss_pred             HHHHHHHHHhccCCccCCceEEEEechhhcCH------------HHHHHHHHHhcCCC------cCcEEEEEECChhhCc
Confidence            33344443332223334557999999999976            55899999999755      4588999999999988


Q ss_pred             HHhhcCc
Q psy16204        478 TLCLEGV  484 (577)
Q Consensus       478 ~allrr~  484 (577)
                      +.++.|.
T Consensus       177 pTI~SRc  183 (342)
T PRK06964        177 PTILSRC  183 (342)
T ss_pred             HHHHhcC
Confidence            7766553

>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting

Probab=98.36  E-value=2.8e-07  Score=75.40  Aligned_cols=35  Identities=46%  Similarity=0.923  Sum_probs=32.9

Q ss_pred             CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC
Q psy16204        541 LPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG  575 (577)
Q Consensus       541 ~~It~~df~~Al~~~~psv~~~~~~~~~~~~~~~~  575 (577)
                      .+|+.+||.+||++++|||+.+||.+|++|+++||
T Consensus        28 p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG   62 (62)
T PF09336_consen   28 PPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG   62 (62)
T ss_dssp             HHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence            47999999999999999999999999999999999

It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.35  E-value=2.4e-06  Score=86.57  Aligned_cols=64  Identities=17%  Similarity=0.203  Sum_probs=44.1

Q ss_pred             CCccccc----CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204        218 VQWNKVA----GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT  284 (577)
Q Consensus       218 v~~~dIi----G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~  284 (577)
                      .+|++..    ++..++..+.+++...   .....+++|+|+||||||+||.+||.++   +..++.++..++.
T Consensus        69 ~tFdnf~~~~~~q~~al~~a~~~~~~~---~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~  139 (244)
T PRK07952         69 CSFENYRVECEGQMNALSKARQYVEEF---DGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM  139 (244)
T ss_pred             CccccccCCCchHHHHHHHHHHHHHhh---ccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence            4455443    3445666666665321   1123589999999999999999999998   6677777766553

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=98.34  E-value=1.2e-05  Score=87.20  Aligned_cols=50  Identities=28%  Similarity=0.297  Sum_probs=40.9

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ..+.-|.|++..|..|--..+.|.     ..++|+.|+.|+|||+++|+||.-|.
T Consensus        14 ~pf~aivGqd~lk~aL~l~av~P~-----iggvLI~G~kGtaKSt~~Rala~LLp   63 (423)
T COG1239          14 LPFTAIVGQDPLKLALGLNAVDPQ-----IGGALIAGEKGTAKSTLARALADLLP   63 (423)
T ss_pred             cchhhhcCchHHHHHHhhhhcccc-----cceeEEecCCCccHHHHHHHHHHhCC
Confidence            458899999999987765544432     25899999999999999999999885

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=98.31  E-value=1.1e-05  Score=85.10  Aligned_cols=52  Identities=13%  Similarity=0.161  Sum_probs=41.0

Q ss_pred             cCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcC
Q psy16204        414 YAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEG  483 (577)
Q Consensus       414 ~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr  483 (577)
                      ...-|++||++|+|..            ...|.||+.|+.-.      .++++|..|+.++.|++.+..|
T Consensus       107 g~~kV~iI~~ae~m~~------------~AaNaLLKtLEEPp------~~t~fiL~t~~~~~lLpTIrSR  158 (334)
T PRK07993        107 GGAKVVWLPDAALLTD------------AAANALLKTLEEPP------ENTWFFLACREPARLLATLRSR  158 (334)
T ss_pred             CCceEEEEcchHhhCH------------HHHHHHHHHhcCCC------CCeEEEEEECChhhChHHHHhc
Confidence            3456999999999976            55899999999865      4578888888898877665443

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=98.30  E-value=5.7e-06  Score=87.22  Aligned_cols=52  Identities=13%  Similarity=0.146  Sum_probs=40.9

Q ss_pred             cCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcC
Q psy16204        414 YAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEG  483 (577)
Q Consensus       414 ~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr  483 (577)
                      ...-|++||++|+|..            ...|.||..++.-.      .++++|.+|+.++.|++.++.|
T Consensus       106 g~~KV~iI~~a~~m~~------------~AaNaLLKtLEEPp------~~~~fiL~t~~~~~llpTI~SR  157 (325)
T PRK06871        106 GGNKVVYIQGAERLTE------------AAANALLKTLEEPR------PNTYFLLQADLSAALLPTIYSR  157 (325)
T ss_pred             CCceEEEEechhhhCH------------HHHHHHHHHhcCCC------CCeEEEEEECChHhCchHHHhh
Confidence            3446999999999976            55899999999866      4578888888898887665543

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.29  E-value=1.3e-06  Score=80.91  Aligned_cols=59  Identities=17%  Similarity=0.202  Sum_probs=40.7

Q ss_pred             ccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe---EEEEecCcc
Q psy16204        223 VAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT---FFNVSSSTL  283 (577)
Q Consensus       223 IiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~---fv~v~~s~l  283 (577)
                      ++|.++..+.|..++.  .......+.++++|++|+|||+|++++...+...   ++.+++...
T Consensus         2 fvgR~~e~~~l~~~l~--~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~   63 (185)
T PF13191_consen    2 FVGREEEIERLRDLLD--AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS   63 (185)
T ss_dssp             -TT-HHHHHHHHHTTG--GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred             CCCHHHHHHHHHHHHH--HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence            6899999999999985  2333444789999999999999999888777543   777777655

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.29  E-value=7.4e-06  Score=73.15  Aligned_cols=34  Identities=29%  Similarity=0.268  Sum_probs=28.4

Q ss_pred             eEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      ++++|+||+|||+++..++..+   +.++++++....
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~   38 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE   38 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence            6899999999999999999887   467777777543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=98.26  E-value=8.5e-07  Score=80.89  Aligned_cols=56  Identities=23%  Similarity=0.310  Sum_probs=35.1

Q ss_pred             cCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC---eEEEEecCc
Q psy16204        224 AGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT---TFFNVSSST  282 (577)
Q Consensus       224 iG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~---~fv~v~~s~  282 (577)
                      +|...+.+.+.+.+..-.   .....|||+|++||||+++|++|+...+.   +|+.++|..
T Consensus         1 vG~S~~~~~l~~~l~~~a---~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~   59 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERLA---KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCAS   59 (138)
T ss_dssp             --SCHHHHHHHHHHHHHH---CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHC
T ss_pred             CCCCHHHHHHHHHHHHHh---CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhh
Confidence            355555666666553211   12246999999999999999999987653   555555543

>KOG1514|consensus

Probab=98.26  E-value=3.9e-05  Score=87.31  Aligned_cols=65  Identities=14%  Similarity=0.049  Sum_probs=46.1

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC----------CeEEEEecCcccc
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG----------TTFFNVSSSTLTS  285 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~----------~~fv~v~~s~l~~  285 (577)
                      +.+-+.+...+.|..++..-+........+.+.|.||||||.+++.+-+++.          ..|+.|++-.+.+
T Consensus       396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~  470 (767)
T KOG1514|consen  396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLAS  470 (767)
T ss_pred             ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecC
Confidence            4456667777777777755443322234578899999999999999998774          4677788776643

>PRK08181 transposase; Validated

Probab=98.25  E-value=3.1e-06  Score=86.99  Aligned_cols=36  Identities=25%  Similarity=0.266  Sum_probs=29.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      .+++|+||||||||.||.+|+.++   |..+++++..++
T Consensus       107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L  145 (269)
T PRK08181        107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDL  145 (269)
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHH
Confidence            589999999999999999999765   566777776554

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=98.25  E-value=1.2e-05  Score=84.53  Aligned_cols=44  Identities=20%  Similarity=0.061  Sum_probs=35.9

Q ss_pred             cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        226 LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       226 ~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      ++.+.+.|...+.    ...++.++||+||+|+||+++|.++|+.+-|
T Consensus         9 ~~~~~~~l~~~~~----~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC   52 (319)
T PRK08769          9 QQRAYDQTVAALD----AGRLGHGLLICGPEGLGKRAVALALAEHVLA   52 (319)
T ss_pred             HHHHHHHHHHHHH----cCCcceeEeeECCCCCCHHHHHHHHHHHHhC
Confidence            5667777777764    3356678999999999999999999999866

>KOG2680|consensus

Probab=98.24  E-value=1.8e-05  Score=83.12  Aligned_cols=77  Identities=22%  Similarity=0.222  Sum_probs=54.4

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCcc-ccceeEEecCCCCChHHHHHHHHHHhC--CeEEEEecCccccccccchHHHH
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPE-FFKEALERHSHGTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEKLV  295 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~-~~k~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l~~k~~G~~e~~v  295 (577)
                      .-+..+||-.|.+..--.+.. ++..+ --+.+|+.|+||+|||.+|-.+++.+|  .||..+.++++.+--...+|.+.
T Consensus        38 ~s~GmVGQ~~AR~Aagvi~km-i~egkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTEAlt  116 (454)
T KOG2680|consen   38 VSEGMVGQVKARKAAGVILKM-IREGKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEALT  116 (454)
T ss_pred             ccccchhhHHHHHHhHHHHHH-HHcCcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeeecccHHHHHH
Confidence            345678887777643332221 11122 126799999999999999999999998  69999999998765555555544


Q ss_pred             H
Q psy16204        296 R  296 (577)
Q Consensus       296 r  296 (577)
                      +
T Consensus       117 Q  117 (454)
T KOG2680|consen  117 Q  117 (454)
T ss_pred             H
Confidence            3

>KOG2227|consensus

Probab=98.24  E-value=0.00012  Score=80.46  Aligned_cols=65  Identities=20%  Similarity=0.172  Sum_probs=50.5

Q ss_pred             cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC----C-eEEEEecCcccc
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG----T-TFFNVSSSTLTS  285 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~----~-~fv~v~~s~l~~  285 (577)
                      -..+.|.+...+.+++++..++.. +...++.+.|-||+|||.+...+-..+.    . ..++++|..+..
T Consensus       149 p~~l~gRe~e~~~v~~F~~~hle~-~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~  218 (529)
T KOG2227|consen  149 PGTLKGRELEMDIVREFFSLHLEL-NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTE  218 (529)
T ss_pred             CCCccchHHHHHHHHHHHHhhhhc-ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccc
Confidence            467899999999999999887643 2335789999999999999887765553    2 458899987643

>PRK06526 transposase; Provisional

Probab=98.21  E-value=2.1e-06  Score=87.33  Aligned_cols=25  Identities=28%  Similarity=0.268  Sum_probs=22.7

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHh
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      ..+++|+||||||||.||.+|+.++
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a  122 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRA  122 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHH
Confidence            3689999999999999999999875

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.20  E-value=9.4e-06  Score=84.72  Aligned_cols=58  Identities=19%  Similarity=0.094  Sum_probs=39.6

Q ss_pred             CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        225 GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       225 G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      +...+.....+++..... ....+|++|+||+|||||.||.+||+++   |..+..+...++
T Consensus       135 ~~~~~~~~~~~fi~~~~~-~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l  195 (306)
T PRK08939        135 DRLDALMAALDFLEAYPP-GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEF  195 (306)
T ss_pred             HHHHHHHHHHHHHHHhhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHH
Confidence            344444444455432111 1234799999999999999999999998   567777776654

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.19  E-value=9.9e-06  Score=82.35  Aligned_cols=55  Identities=22%  Similarity=0.168  Sum_probs=40.0

Q ss_pred             cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204        226 LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT  284 (577)
Q Consensus       226 ~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~  284 (577)
                      ...+...+..+..+--    ...+++|+||||||||.||-||+.++   |..++.+...+++
T Consensus        88 ~~~~l~~~~~~~~~~~----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~  145 (254)
T COG1484          88 DKKALEDLASLVEFFE----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLL  145 (254)
T ss_pred             hHHHHHHHHHHHHHhc----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            4444555555542211    34799999999999999999999987   5777888877664

>PF13173 AAA_14: AAA domain

Probab=98.18  E-value=7.7e-06  Score=73.69  Aligned_cols=36  Identities=22%  Similarity=0.240  Sum_probs=31.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC--CeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG--TTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l  283 (577)
                      +.++|+||+|||||++++.+++.+.  -.++++++.+.
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~   40 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP   40 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence            3579999999999999999999887  78888888765

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.16  E-value=1.2e-05  Score=84.98  Aligned_cols=55  Identities=20%  Similarity=0.172  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204        227 TEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT  284 (577)
Q Consensus       227 ~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~  284 (577)
                      ..+++....++.....   ...+++|+||+|||||.||.+||+++   |..+++++..++.
T Consensus       166 ~~~~~~~~~f~~~f~~---~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~  223 (329)
T PRK06835        166 EKILEKCKNFIENFDK---NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELI  223 (329)
T ss_pred             HHHHHHHHHHHHHHhc---cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHH
Confidence            3445555555543211   22689999999999999999999987   6778888877653

>PRK09183 transposase/IS protein; Provisional

Probab=98.14  E-value=3.2e-06  Score=85.88  Aligned_cols=36  Identities=28%  Similarity=0.310  Sum_probs=28.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      .+++|+||||||||+||.+|+.++   |..+.++++.++
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l  141 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADL  141 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHH
Confidence            579999999999999999998664   556666665543

>PRK09087 hypothetical protein; Validated

Probab=98.13  E-value=2.2e-05  Score=78.30  Aligned_cols=53  Identities=19%  Similarity=0.180  Sum_probs=34.9

Q ss_pred             CCCCcccccC---cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        216 PNVQWNKVAG---LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       216 ~~v~~~dIiG---~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      +..++++.+.   ...+...+.+.   + ...  ...++||||+|+|||+|++++++..+..
T Consensus        16 ~~~~~~~Fi~~~~N~~a~~~l~~~---~-~~~--~~~l~l~G~~GsGKThLl~~~~~~~~~~   71 (226)
T PRK09087         16 PAYGRDDLLVTESNRAAVSLVDHW---P-NWP--SPVVVLAGPVGSGKTHLASIWREKSDAL   71 (226)
T ss_pred             CCCChhceeecCchHHHHHHHHhc---c-cCC--CCeEEEECCCCCCHHHHHHHHHHhcCCE
Confidence            4457888774   23344433332   2 111  2348999999999999999999886654

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=98.11  E-value=5.9e-06  Score=72.84  Aligned_cols=24  Identities=29%  Similarity=0.271  Sum_probs=21.2

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      |.|+||||+|||++|+.||+.+..
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~   24 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLK   24 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHH
Confidence            579999999999999999987653

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=98.11  E-value=2.8e-05  Score=81.86  Aligned_cols=45  Identities=11%  Similarity=0.018  Sum_probs=36.1

Q ss_pred             cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        226 LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       226 ~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      ++...+.|...+.    ...++.++||+||.|+||+.+|+++|+.+-+.
T Consensus         8 l~~~~~~l~~~~~----~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~   52 (319)
T PRK06090          8 LVPVWQNWKAGLD----AGRIPGALLLQSDEGLGVESLVELFSRALLCQ   52 (319)
T ss_pred             HHHHHHHHHHHHH----cCCcceeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence            4566777777663    34566799999999999999999999998653

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=98.11  E-value=1.2e-05  Score=94.22  Aligned_cols=51  Identities=16%  Similarity=0.047  Sum_probs=38.6

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCc-------------ccc---ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMP-------------EFF---KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~-------------~~~---k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -.|.|.+.+|..|.-.+.......             ...   .+|||+|.||||||.+|+++++..
T Consensus       450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~ls  516 (915)
T PTZ00111        450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLS  516 (915)
T ss_pred             CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhC
Confidence            468999999998877775543210             011   269999999999999999999864

>KOG0990|consensus

Probab=98.10  E-value=7.3e-06  Score=86.30  Aligned_cols=60  Identities=17%  Similarity=0.018  Sum_probs=51.3

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      +|.+.+++..+.+++++++....+.++...+    .. .+.|+|||||+|||....+.|..+-++
T Consensus        30 pwvekyrP~~l~dv~~~~ei~st~~~~~~~~----~l-Ph~L~YgPPGtGktsti~a~a~~ly~~   89 (360)
T KOG0990|consen   30 PWVEKYRPPFLGIVIKQEPIWSTENRYSGMP----GL-PHLLFYGPPGTGKTSTILANARDFYSP   89 (360)
T ss_pred             CCccCCCCchhhhHhcCCchhhHHHHhccCC----CC-CcccccCCCCCCCCCchhhhhhhhcCC
Confidence            6788899999999999999999999986433    22 289999999999999999999987664

>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=98.10  E-value=6e-06  Score=86.48  Aligned_cols=93  Identities=28%  Similarity=0.403  Sum_probs=71.4

Q ss_pred             eeEEecCCCCChHHHHHHHH------HHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCC
Q psy16204        249 EALERHSHGTGKTMLAKAVA------TECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNG  322 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA------~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~  322 (577)
                      .+||.||+|.||+.||+.|-      ..+..+|++|+|..+..    .  ..+..+|..                     
T Consensus       210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrg----d--~amsalfgh---------------------  262 (531)
T COG4650         210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRG----D--TAMSALFGH---------------------  262 (531)
T ss_pred             CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecC----c--hHHHHHHhh---------------------
Confidence            58999999999999999886      34568999999998743    2  344556654                     


Q ss_pred             CCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchh
Q psy16204        323 EPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGR  402 (577)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  402 (577)
                                         ++|+||++...+.|.                                              
T Consensus       263 -------------------vkgaftga~~~r~gl----------------------------------------------  277 (531)
T COG4650         263 -------------------VKGAFTGARESREGL----------------------------------------------  277 (531)
T ss_pred             -------------------hccccccchhhhhhh----------------------------------------------
Confidence                               689999988777766                                              


Q ss_pred             hhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhC
Q psy16204        403 INKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG  453 (577)
Q Consensus       403 ~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~  453 (577)
                              .+.....++|+|||..++..            -+.-||..|+.
T Consensus       278 --------lrsadggmlfldeigelgad------------eqamllkaiee  308 (531)
T COG4650         278 --------LRSADGGMLFLDEIGELGAD------------EQAMLLKAIEE  308 (531)
T ss_pred             --------hccCCCceEehHhhhhcCcc------------HHHHHHHHHHh
Confidence                    66667789999999988651            14567777763

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.05  E-value=6.9e-06  Score=79.15  Aligned_cols=38  Identities=34%  Similarity=0.395  Sum_probs=29.3

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT  284 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~  284 (577)
                      ..+++|+||+|||||.||-++++++   |.++.+++..+++
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~   87 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLL   87 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCcee
Confidence            3689999999999999999999876   6777777776553

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=98.05  E-value=1e-05  Score=85.05  Aligned_cols=52  Identities=13%  Similarity=0.137  Sum_probs=38.7

Q ss_pred             cCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcC
Q psy16204        414 YAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEG  483 (577)
Q Consensus       414 ~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr  483 (577)
                      ....|++||+++.+..            ...+.||..|+....      ++.+|.+|+.++.+++.+..|
T Consensus       112 ~~~kV~iiEp~~~Ld~------------~a~naLLk~LEep~~------~~~~Ilvth~~~~ll~ti~SR  163 (325)
T PRK08699        112 GGLRVILIHPAESMNL------------QAANSLLKVLEEPPP------QVVFLLVSHAADKVLPTIKSR  163 (325)
T ss_pred             CCceEEEEechhhCCH------------HHHHHHHHHHHhCcC------CCEEEEEeCChHhChHHHHHH
Confidence            4456999999999865            458889999987642      255667888888877665544

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=98.01  E-value=9.5e-05  Score=80.33  Aligned_cols=70  Identities=17%  Similarity=0.187  Sum_probs=43.2

Q ss_pred             CCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC-----CeEEEEecCccc
Q psy16204        215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG-----TTFFNVSSSTLT  284 (577)
Q Consensus       215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~-----~~fv~v~~s~l~  284 (577)
                      .+..++++++.-..-......+..++-.....+.-++|||+.|.|||.|++|++++..     ..++++...+++
T Consensus        81 ~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~  155 (408)
T COG0593          81 NPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT  155 (408)
T ss_pred             CCCCchhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH
Confidence            3445677765433322222222222222222457799999999999999999998874     356777766553

>KOG2170|consensus

Probab=97.96  E-value=7.3e-05  Score=78.48  Aligned_cols=51  Identities=24%  Similarity=0.170  Sum_probs=41.4

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCccccce--eEEecCCCCChHHHHHHHHHHh
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMPEFFKE--ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~--ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      ..+.||.-+++.+..++..-+..+..-|.  +=|+|++||||..+++.||+.+
T Consensus        82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~  134 (344)
T KOG2170|consen   82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL  134 (344)
T ss_pred             HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence            46799999999999998766555543343  4589999999999999999874

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=97.95  E-value=0.00014  Score=68.93  Aligned_cols=44  Identities=25%  Similarity=0.179  Sum_probs=34.1

Q ss_pred             cCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        224 AGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       224 iG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +|.++..+.|.+.+...     ....++++||.|+|||+|++.+...+.
T Consensus         2 ~gR~~el~~l~~~l~~~-----~~~~~~l~G~rg~GKTsLl~~~~~~~~   45 (234)
T PF01637_consen    2 FGREKELEKLKELLESG-----PSQHILLYGPRGSGKTSLLKEFINELK   45 (234)
T ss_dssp             -S-HHHHHHHHHCHHH-------SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHhh-----cCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence            67788888888877432     235799999999999999999999984

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PF05729 NACHT: NACHT domain

Probab=97.92  E-value=0.00013  Score=65.91  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=21.2

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -++++|+||+|||++++.++..+.
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~   25 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLA   25 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHH
Confidence            378999999999999999997763

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.90  E-value=0.00023  Score=66.68  Aligned_cols=33  Identities=27%  Similarity=0.227  Sum_probs=26.8

Q ss_pred             eEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      +|++||||+|||+++..++.+.   |.++++++..+
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~   37 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE   37 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            6899999999999999887654   56777777653

A related protein is found in archaea.

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=97.87  E-value=0.00013  Score=78.22  Aligned_cols=66  Identities=20%  Similarity=0.267  Sum_probs=47.5

Q ss_pred             CCCCcccccCcHHHHHHHHHHH-HCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcccc
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAM-VLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLTS  285 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l-~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~~  285 (577)
                      ....|+.|++.....+.+.+.. ...    .+-..+|+.|.+||||-.+||+.....   ..||+-++|..+-+
T Consensus       199 ~~~~F~~~v~~S~~mk~~v~qA~k~A----mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe  268 (511)
T COG3283         199 DVSGFEQIVAVSPKMKHVVEQAQKLA----MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE  268 (511)
T ss_pred             cccchHHHhhccHHHHHHHHHHHHhh----ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence            3456788888777666555443 221    111358999999999999999887665   47999999998754

>PRK06921 hypothetical protein; Provisional

Probab=97.85  E-value=8.8e-05  Score=75.92  Aligned_cols=37  Identities=24%  Similarity=0.160  Sum_probs=30.3

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCcc
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATEC----GTTFFNVSSSTL  283 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~l  283 (577)
                      ..+++|+|+||+|||.||.+||+++    +..++++...++
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l  157 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG  157 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHH
Confidence            4689999999999999999999986    456677766443

>PF14516 AAA_35: AAA-like domain

Probab=97.84  E-value=0.00052  Score=72.15  Aligned_cols=67  Identities=18%  Similarity=0.124  Sum_probs=45.9

Q ss_pred             cCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccccccccchHHHHH
Q psy16204        224 AGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLTSKYRGESEKLVR  296 (577)
Q Consensus       224 iG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~~k~~G~~e~~vr  296 (577)
                      +....+-+.+.+.+..|      ..-+.+.||..+|||+|..++.+.+   |...+++++..+-.......+..++
T Consensus        14 i~R~~~e~~~~~~i~~~------G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~   83 (331)
T PF14516_consen   14 IERPPAEQECYQEIVQP------GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLR   83 (331)
T ss_pred             cCchHHHHHHHHHHhcC------CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHH
Confidence            34445667777776442      1357899999999999999887665   6888899998764433333344444

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=97.84  E-value=0.00015  Score=75.75  Aligned_cols=50  Identities=14%  Similarity=0.137  Sum_probs=39.1

Q ss_pred             CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhc
Q psy16204        415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLE  482 (577)
Q Consensus       415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allr  482 (577)
                      ...|++||++|++..            ...|.||..++.-.      .++++|..|+.++.|++.+..
T Consensus        95 ~~kv~ii~~ad~mt~------------~AaNaLLK~LEEPp------~~~~fiL~~~~~~~ll~TI~S  144 (290)
T PRK05917         95 PYKIYIIHEADRMTL------------DAISAFLKVLEDPP------QHGVIILTSAKPQRLPPTIRS  144 (290)
T ss_pred             CceEEEEechhhcCH------------HHHHHHHHHhhcCC------CCeEEEEEeCChhhCcHHHHh
Confidence            346999999999976            55899999999866      447788888888887755443

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.81  E-value=2.1e-05  Score=68.85  Aligned_cols=31  Identities=26%  Similarity=0.404  Sum_probs=28.2

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFNVSS  280 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~  280 (577)
                      |++.|+||||||++|+.||+.++++++.++.
T Consensus         2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~   32 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERLGFPVISMDD   32 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence            6899999999999999999999998876665

...

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.80  E-value=3e-05  Score=83.71  Aligned_cols=109  Identities=18%  Similarity=0.148  Sum_probs=72.8

Q ss_pred             CCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhH
Q psy16204        359 GPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHE  438 (577)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~  438 (577)
                      -++-+.|+|||+||+..+.....++...|.+-....+.+-|...+++++-.........|||||||+.+....       
T Consensus        48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-------  120 (436)
T COG2256          48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-------  120 (436)
T ss_pred             CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh-------
Confidence            4667789999999999988888887777766655555554544444444222222335899999999997632       


Q ss_pred             HHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchh-hHHHhhcCccc
Q psy16204        439 ASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQ-LLTLCLEGVVI  486 (577)
Q Consensus       439 ~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~-L~~allrr~~i  486 (577)
                           +..||..|+.-       ..++|-|||..|.- |-.+++.|..+
T Consensus       121 -----QD~lLp~vE~G-------~iilIGATTENPsF~ln~ALlSR~~v  157 (436)
T COG2256         121 -----QDALLPHVENG-------TIILIGATTENPSFELNPALLSRARV  157 (436)
T ss_pred             -----hhhhhhhhcCC-------eEEEEeccCCCCCeeecHHHhhhhhe
Confidence                 66788888742       22444455666654 77788777655

>KOG1970|consensus

Probab=97.76  E-value=0.00032  Score=78.40  Aligned_cols=72  Identities=14%  Similarity=0.124  Sum_probs=52.8

Q ss_pred             HhhhhhcCCCCCcccccCcHHHHHHHHHHHHC-cCCCcccc-ceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVL-PTIMPEFF-KEALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~-pl~~~~~~-k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      .+.|..++.+.+.+++.=...=+..|+..+.. -...+++. +-+||+||+|||||+.++.|++++|..+.+-.
T Consensus        69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~  142 (634)
T KOG1970|consen   69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS  142 (634)
T ss_pred             cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence            34788888888888887766666666666640 01122232 34789999999999999999999999887755

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.76  E-value=2.9e-05  Score=86.58  Aligned_cols=71  Identities=14%  Similarity=0.023  Sum_probs=56.6

Q ss_pred             HhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      ...|.+++.+.+.+++.-...-.+.|+..+..-+......+-+||+||+|||||++++.||+++|..+.+-
T Consensus         6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew   76 (519)
T PF03215_consen    6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW   76 (519)
T ss_pred             cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence            45789999999999999988777777777754333322234578999999999999999999999888764

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=97.73  E-value=0.00063  Score=67.91  Aligned_cols=41  Identities=22%  Similarity=0.209  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHH
Q psy16204        227 TEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       227 ~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      +..++.|.+.+...-   .-.+-|.++|++|+|||+||+.+++.
T Consensus         2 e~~~~~l~~~L~~~~---~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen    2 EKEIEKLKDWLLDNS---NEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             HHHHHHHHHHHHTTT---TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhCCC---CCeEEEEEEcCCcCCcceeeeecccc
Confidence            456677777775422   33357899999999999999999987

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]

Probab=97.73  E-value=7.6e-05  Score=84.10  Aligned_cols=37  Identities=27%  Similarity=0.453  Sum_probs=33.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC--CeEEEEecCcccc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG--TTFFNVSSSTLTS  285 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l~~  285 (577)
                      .+|+.|.|||||-.+||+|.+..+  .||+-|+|..+.+
T Consensus       338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~  376 (606)
T COG3284         338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPE  376 (606)
T ss_pred             CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchH
Confidence            589999999999999999998765  7999999998754

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.71  E-value=0.00013  Score=73.20  Aligned_cols=32  Identities=25%  Similarity=0.128  Sum_probs=24.0

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATECGTTFFNVSS  280 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~  280 (577)
                      +..+||||+||+|||++|+.++.  ...++..+.
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~   43 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM   43 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence            35699999999999999999962  244444444

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=97.67  E-value=0.00035  Score=74.79  Aligned_cols=30  Identities=27%  Similarity=0.150  Sum_probs=26.0

Q ss_pred             ccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        244 PEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       244 ~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      ...++|+.|||++|+|||+|.-.....+..
T Consensus        59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~   88 (362)
T PF03969_consen   59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPI   88 (362)
T ss_pred             CCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence            345799999999999999999999887654

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.66  E-value=7.2e-05  Score=84.44  Aligned_cols=62  Identities=15%  Similarity=0.116  Sum_probs=48.0

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCC-ccccceeEEecCCCCChHHHHHHHHHHhC-CeEEEEec
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIM-PEFFKEALERHSHGTGKTMLAKAVATECG-TTFFNVSS  280 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~-~~~~k~ILL~GPpGtGKT~LAkaLA~el~-~~fv~v~~  280 (577)
                      -|+++.|++++++++.+++...... ...-..++|.||||+|||+||++||+.+. .+++.+.+
T Consensus        74 fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg  137 (644)
T PRK15455         74 AFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA  137 (644)
T ss_pred             chhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence            4779999999999999988322111 12224689999999999999999999886 57777665

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.64  E-value=0.0018  Score=70.23  Aligned_cols=75  Identities=13%  Similarity=0.083  Sum_probs=43.8

Q ss_pred             hhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHH----HC--cCCCccccceeEEecCCCCChHHHHHHH
Q psy16204        194 FYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAM----VL--PTIMPEFFKEALERHSHGTGKTMLAKAV  267 (577)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l----~~--pl~~~~~~k~ILL~GPpGtGKT~LAkaL  267 (577)
                      ....++.+.+++.+-.......   ..+++...+.+++.|.+.+    ..  |......+..++|+||+|+|||+++.-|
T Consensus       118 L~~~dv~~~~~~~i~~~~~~~~---~~~~~~~~~~v~~~l~~~l~~~i~~~~~~~~~~~~~vi~lvGptGvGKTTT~aKL  194 (388)
T PRK12723        118 LRENDFSESYIKDINEFIKKEF---SLSDLDDYDKVRDSVIIYIAKTIKCSGSIIDNLKKRVFILVGPTGVGKTTTIAKL  194 (388)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHh---hhhhcCCHHHHHHHHHHHHHHHhhccCccccCCCCeEEEEECCCCCCHHHHHHHH
Confidence            3457788877776655443322   2223333444554444333    21  1111122356899999999999999999


Q ss_pred             HHHh
Q psy16204        268 ATEC  271 (577)
Q Consensus       268 A~el  271 (577)
                      |..+
T Consensus       195 A~~~  198 (388)
T PRK12723        195 AAIY  198 (388)
T ss_pred             HHHH
Confidence            8765

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.62  E-value=0.0021  Score=70.35  Aligned_cols=85  Identities=14%  Similarity=0.049  Sum_probs=50.8

Q ss_pred             hhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCC----ccccceeEEecCCCCChHHHHHHHHH
Q psy16204        194 FYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIM----PEFFKEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~----~~~~k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      ....++.+.++..+-+........   ........+++.+.+.+...+..    ...++.|+|.||+|+|||+++..||.
T Consensus       187 L~~~dV~~~~~~~ll~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA~  263 (436)
T PRK11889        187 LEQNDVEQYFIHAYAEKLKVKFEN---ATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAW  263 (436)
T ss_pred             HHHCCCCHHHHHHHHHHHHhhhcc---cccCCHHHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHHH
Confidence            445778888877665544332221   12233355666666555321211    12235689999999999999999997


Q ss_pred             HhC---CeEEEEecC
Q psy16204        270 ECG---TTFFNVSSS  281 (577)
Q Consensus       270 el~---~~fv~v~~s  281 (577)
                      .+.   ..+..+++.
T Consensus       264 ~L~~~GkkVglI~aD  278 (436)
T PRK11889        264 QFHGKKKTVGFITTD  278 (436)
T ss_pred             HHHHcCCcEEEEecC
Confidence            763   344455554

>PHA00729 NTP-binding motif containing protein

Probab=97.61  E-value=0.00074  Score=68.32  Aligned_cols=25  Identities=32%  Similarity=0.262  Sum_probs=23.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .+++|+|+||||||+||.+||.+++
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4899999999999999999999876

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.60  E-value=0.0035  Score=68.95  Aligned_cols=37  Identities=24%  Similarity=0.173  Sum_probs=29.5

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      +..++|+|++|+|||+++..||..+   |..+..+++..+
T Consensus        95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~  134 (437)
T PRK00771         95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY  134 (437)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence            4678999999999999999999776   456666666543

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=97.59  E-value=0.0021  Score=67.17  Aligned_cols=51  Identities=20%  Similarity=0.216  Sum_probs=39.6

Q ss_pred             CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcC
Q psy16204        415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEG  483 (577)
Q Consensus       415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr  483 (577)
                      ...|++||++|.+..            ...|.||..++.-..      ++++|.+|+.++.|++.+..|
T Consensus       104 ~~kV~II~~ad~m~~------------~AaNaLLKtLEEPp~------~t~~iL~t~~~~~lLpTI~SR  154 (290)
T PRK07276        104 KQQVFIIKDADKMHV------------NAANSLLKVIEEPQS------EIYIFLLTNDENKVLPTIKSR  154 (290)
T ss_pred             CcEEEEeehhhhcCH------------HHHHHHHHHhcCCCC------CeEEEEEECChhhCchHHHHc
Confidence            346999999999976            458999999998663      467778887788766666554

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=97.56  E-value=0.00095  Score=75.68  Aligned_cols=66  Identities=12%  Similarity=0.077  Sum_probs=46.3

Q ss_pred             cCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCC-------CCCcCCCceEEEEEecCCc---hhhHHHhhcC
Q psy16204        414 YAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGL-------NSSLYEDKIIMILAATNHP---YQLLTLCLEG  483 (577)
Q Consensus       414 ~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~-------~~~~~~~~~VlIIatTN~p---~~L~~allrr  483 (577)
                      .+..||||||+..+.+            .+++.|++-|+.-       ........++++||+-|..   +.|..++++|
T Consensus        92 Ah~GvL~lDe~n~~~~------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDR  159 (584)
T PRK13406         92 ADGGVLVLAMAERLEP------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADR  159 (584)
T ss_pred             ccCCEEEecCcccCCH------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhh
Confidence            3456999999988865            7899999999852       1112234568888874433   2388889999


Q ss_pred             cccccccC
Q psy16204        484 VVIDVNLD  491 (577)
Q Consensus       484 ~~i~~~vd  491 (577)
                      |.+..+++
T Consensus       160 f~l~v~v~  167 (584)
T PRK13406        160 LAFHLDLD  167 (584)
T ss_pred             eEEEEEcC
Confidence            98865553

>PLN03210 Resistant to P

Probab=97.55  E-value=0.0055  Score=74.23  Aligned_cols=72  Identities=24%  Similarity=0.372  Sum_probs=51.9

Q ss_pred             chhhhHHHhhhhhcC---CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        201 PSLIETLEKDILQNN---PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       201 ~~~~~~~~~~~~~~~---~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      ..+|+..-+++....   +...+++++|.+...+.|...+....   +-.+-|-++|++|+|||+||++++..+...|
T Consensus       161 ~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~---~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F  235 (1153)
T PLN03210        161 AKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES---EEVRMVGIWGSSGIGKTTIARALFSRLSRQF  235 (1153)
T ss_pred             HHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc---CceEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence            344555555554443   33467899999999999998875432   2235678999999999999999998875443

syringae 6; Provisional

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.54  E-value=0.00034  Score=65.12  Aligned_cols=52  Identities=19%  Similarity=0.133  Sum_probs=42.5

Q ss_pred             cccccCcHHHHHHHHHHHHCcCCCccccce--eEEecCCCCChHHHHHHHHHHh
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKE--ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~--ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -.++.||.-|.+.|..++..-+..+...+.  +-|+|+||||||.+++.||+.+
T Consensus        24 ~~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   24 QRNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             HHHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            457899999999999998776655443344  5599999999999999999985

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.52  E-value=0.0016  Score=70.31  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=21.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      ..++|.||+|||||+++..||..+
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999764

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=97.50  E-value=0.00074  Score=70.63  Aligned_cols=52  Identities=12%  Similarity=0.171  Sum_probs=39.0

Q ss_pred             CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCc
Q psy16204        415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGV  484 (577)
Q Consensus       415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~  484 (577)
                      ..-|++||++|++..            ...+.||..|+....      ++++|.+|+.++.|++.+..|.
T Consensus        90 ~~KvvII~~~e~m~~------------~a~NaLLK~LEEPp~------~t~~il~~~~~~kll~TI~SRc  141 (299)
T PRK07132         90 QKKILIIKNIEKTSN------------SLLNALLKTIEEPPK------DTYFLLTTKNINKVLPTIVSRC  141 (299)
T ss_pred             CceEEEEecccccCH------------HHHHHHHHHhhCCCC------CeEEEEEeCChHhChHHHHhCe
Confidence            446999999988854            457899999998664      4677777778888887655443

>PRK08118 topology modulation protein; Reviewed

Probab=97.50  E-value=0.00016  Score=68.81  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=30.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      +.|++.||||+|||++|+.|++.++.+++.++.-
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l   35 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL   35 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence            3589999999999999999999999999888754

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.50  E-value=0.0004  Score=66.93  Aligned_cols=35  Identities=17%  Similarity=0.235  Sum_probs=28.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      .-++++||||+|||+++..++.+.   +...++++...
T Consensus        13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237        13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            347999999999999999988654   56788888864

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.48  E-value=0.00012  Score=70.22  Aligned_cols=27  Identities=33%  Similarity=0.379  Sum_probs=22.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---CCeE
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---GTTF  275 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---~~~f  275 (577)
                      .++|.|+||+|||++++.+.+.+   +.++
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v   30 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV   30 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence            47999999999999999999998   5554

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.47  E-value=0.00063  Score=83.18  Aligned_cols=40  Identities=33%  Similarity=0.347  Sum_probs=36.4

Q ss_pred             ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        246 FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       246 ~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      +.+++||-|.||+|||+|..+||+..|-.+++++.++.++
T Consensus      1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTd 1581 (4600)
T COG5271        1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTD 1581 (4600)
T ss_pred             cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccch
Confidence            3478999999999999999999999999999999997654

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.46  E-value=0.00011  Score=67.59  Aligned_cols=31  Identities=19%  Similarity=0.339  Sum_probs=28.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      ..|+|+|+||||||++|+.||+.++.+|+..
T Consensus         5 ~~i~l~G~~GsGKstla~~La~~l~~~~~d~   35 (175)
T PRK00131          5 PNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT   35 (175)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence            4789999999999999999999999988753

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=97.46  E-value=0.00036  Score=70.36  Aligned_cols=38  Identities=24%  Similarity=0.160  Sum_probs=32.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      .+..++||+|||||+++|.+|+.+|.+++.++|++.++
T Consensus        33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~   70 (231)
T PF12774_consen   33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD   70 (231)
T ss_dssp             TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-
T ss_pred             CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc
Confidence            36678999999999999999999999999999998654

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.45  E-value=0.0012  Score=72.37  Aligned_cols=35  Identities=29%  Similarity=0.302  Sum_probs=29.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      .-+|++|+||+|||+|+..+|...   +.++++++..+
T Consensus        81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee  118 (446)
T PRK11823         81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE  118 (446)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence            357999999999999999998765   56788887643

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.44  E-value=0.00054  Score=66.63  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=22.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      ..+.+.|+||+|||+++.-||..+.-
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~~   31 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLRE   31 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHh
Confidence            36899999999999999999988753

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.44  E-value=0.00085  Score=65.65  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=28.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      .-++++|+||+|||++|..+|.++   +..++++++.
T Consensus        24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            347999999999999999999755   6778888775

>PRK13947 shikimate kinase; Provisional

Probab=97.43  E-value=0.00012  Score=68.03  Aligned_cols=41  Identities=32%  Similarity=0.318  Sum_probs=32.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGE  290 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~  290 (577)
                      ++|+|.|+||||||++|+.||+.++.+|+..+  .+.....|.
T Consensus         2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d--~~~~~~~g~   42 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTD--KEIEKMTGM   42 (171)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECc--hhhhhhcCC
Confidence            36899999999999999999999999986544  344444443

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.36  E-value=0.0014  Score=64.25  Aligned_cols=53  Identities=17%  Similarity=0.191  Sum_probs=35.7

Q ss_pred             cchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC
Q psy16204        399 HSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN  455 (577)
Q Consensus       399 d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~  455 (577)
                      +...+...+...++...+.+++||-+..+.. .   ......++++..|...+....
T Consensus        99 ~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~-~---~~~~~~r~~l~~l~~~l~~~~  151 (226)
T PF06745_consen   99 DLEELLSKIREAIEELKPDRVVIDSLSALLL-Y---DDPEELRRFLRALIKFLKSRG  151 (226)
T ss_dssp             CHHHHHHHHHHHHHHHTSSEEEEETHHHHTT-S---SSGGGHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECHHHHhh-c---CCHHHHHHHHHHHHHHHHHCC
Confidence            4455555555557778889999999999922 1   223445677788888776544

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=97.36  E-value=0.00018  Score=65.35  Aligned_cols=31  Identities=23%  Similarity=0.379  Sum_probs=27.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      +|+|+|+||+|||++|+.||+.++.+++..+
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d   31 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD   31 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence            4789999999999999999999999877544

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK03839 putative kinase; Provisional

Probab=97.35  E-value=0.00017  Score=68.24  Aligned_cols=31  Identities=23%  Similarity=0.364  Sum_probs=28.0

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      .|+|.|+||+|||++++.||+.++.+|+.++
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d   32 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT   32 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence            3789999999999999999999999987654

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=97.35  E-value=0.0041  Score=61.12  Aligned_cols=34  Identities=21%  Similarity=0.178  Sum_probs=28.0

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC----GTTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~  282 (577)
                      -+++.|+||+|||+++..++..+    +.+++++++..
T Consensus        15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~   52 (242)
T cd00984          15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM   52 (242)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence            47999999999999999887654    67888888754

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.34  E-value=0.0037  Score=67.28  Aligned_cols=34  Identities=29%  Similarity=0.303  Sum_probs=27.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      .-+|++|+||+|||+|+..+|..+   +.++++++..
T Consensus        83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E  119 (372)
T cd01121          83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE  119 (372)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            357999999999999999998765   3567777764

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.31  E-value=0.00021  Score=64.12  Aligned_cols=31  Identities=29%  Similarity=0.367  Sum_probs=25.7

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      |++.||||+|||++|+.+++.++  +..++...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~   32 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDE   32 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST--EEEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHH
Confidence            68999999999999999999999  44455443

...

>KOG2035|consensus

Probab=97.28  E-value=0.0044  Score=65.04  Aligned_cols=56  Identities=14%  Similarity=0.097  Sum_probs=47.2

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      |+..+.+.+++.+++..+....|.....     ..-+.++|+|||+|+||-+.+.+|-+++
T Consensus         3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~-----~~d~PHll~yGPSGaGKKTrimclL~el   58 (351)
T KOG2035|consen    3 WVDKYRPKSLDELIYHEELANLLKSLSS-----TGDFPHLLVYGPSGAGKKTRIMCLLREL   58 (351)
T ss_pred             chhhcCcchhhhcccHHHHHHHHHHhcc-----cCCCCeEEEECCCCCCchhhHHHHHHHH
Confidence            6677888889999999999998888763     2334589999999999999999999887

>PRK14974 cell division protein FtsY; Provisional

Probab=97.28  E-value=0.0073  Score=64.34  Aligned_cols=35  Identities=20%  Similarity=0.077  Sum_probs=26.4

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      +.-++|.|++|+|||+++..+|..+   +..+..+.+.
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D  177 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD  177 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence            3568999999999999888888765   3455555544

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=97.26  E-value=0.0005  Score=70.73  Aligned_cols=35  Identities=23%  Similarity=0.298  Sum_probs=25.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCC-e--EEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGT-T--FFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~-~--fv~v~~s~  282 (577)
                      +.+||+||+|||||.+++.+-..+.- .  ...+.++.
T Consensus        34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~   71 (272)
T PF12775_consen   34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSA   71 (272)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-T
T ss_pred             CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccC
Confidence            57999999999999999987665542 2  33455543

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=97.24  E-value=0.00027  Score=63.35  Aligned_cols=30  Identities=23%  Similarity=0.416  Sum_probs=28.0

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      |++.|+||||||++|+.||+.++.+++..+
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~   31 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG   31 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence            679999999999999999999999988776

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.22  E-value=0.01  Score=59.23  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=28.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH---hCCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE---CGTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e---l~~~fv~v~~s~  282 (577)
                      ..+|++||||+|||.+|-.++.+   .|-+.++++..+
T Consensus        22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee   59 (237)
T TIGR03877        22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE   59 (237)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence            56899999999999999877654   266788888754

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK00625 shikimate kinase; Provisional

Probab=97.22  E-value=0.0003  Score=67.86  Aligned_cols=31  Identities=26%  Similarity=0.281  Sum_probs=28.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      .|+|.|.||+|||++++.||+.++.+|+.++
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D   32 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD   32 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence            5899999999999999999999999987765

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.20  E-value=0.0075  Score=59.58  Aligned_cols=35  Identities=23%  Similarity=0.442  Sum_probs=28.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      ..++++|+||+|||+++.+++.+.   +.++++++..+
T Consensus        26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~   63 (234)
T PRK06067         26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN   63 (234)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence            458999999999999999997653   67888888753

>PRK07261 topology modulation protein; Provisional

Probab=97.20  E-value=0.00056  Score=65.22  Aligned_cols=35  Identities=14%  Similarity=0.264  Sum_probs=30.2

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      -|++.|+||+|||+||+.|+..++.+++.++.-..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~   36 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF   36 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence            47899999999999999999999999887765433

>PRK14532 adenylate kinase; Provisional

Probab=97.20  E-value=0.00033  Score=66.58  Aligned_cols=35  Identities=20%  Similarity=0.200  Sum_probs=28.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      .|+|.||||+|||++|+.||+.+|+++  ++..+++.
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr   36 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLR   36 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHH
Confidence            489999999999999999999998655  55655544

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.18  E-value=0.0061  Score=61.04  Aligned_cols=34  Identities=26%  Similarity=0.301  Sum_probs=25.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      ..+++.|+||||||++|..++..+   |...+++...
T Consensus        25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e   61 (230)
T PRK08533         25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ   61 (230)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence            358999999999999986655443   4566777754

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=97.17  E-value=0.0075  Score=60.47  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=27.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC----GTTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~  282 (577)
                      -++|.|+||+|||+++..+|..+    +.++++++...
T Consensus        32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~   69 (271)
T cd01122          32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE   69 (271)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence            47899999999999999887664    66777777653

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=97.16  E-value=0.008  Score=58.65  Aligned_cols=33  Identities=30%  Similarity=0.430  Sum_probs=23.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      -+++.|+||||||++++.++..+   +..++.+...
T Consensus        20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT   55 (196)
T PF13604_consen   20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT   55 (196)
T ss_dssp             EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence            46789999999999999988665   4455555443

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=97.15  E-value=0.00039  Score=63.48  Aligned_cols=32  Identities=28%  Similarity=0.472  Sum_probs=26.8

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      ++|.|+||+|||++|+.|++.++..++  +...+
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~   33 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDL   33 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCccc
Confidence            689999999999999999999887665  44444

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.15  E-value=0.00038  Score=65.45  Aligned_cols=34  Identities=18%  Similarity=0.245  Sum_probs=28.4

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      |++.|+||+|||++|+.||+.+++  ..++.++++.
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr   35 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLR   35 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHH
Confidence            689999999999999999999985  5666666543

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK13949 shikimate kinase; Provisional

Probab=97.11  E-value=0.00041  Score=66.22  Aligned_cols=32  Identities=34%  Similarity=0.482  Sum_probs=29.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      +.|+|.|+||+|||++++.||+.++.+|+..+
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D   33 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD   33 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence            46899999999999999999999999987765

>PRK06217 hypothetical protein; Validated

Probab=97.09  E-value=0.00047  Score=65.82  Aligned_cols=31  Identities=19%  Similarity=0.267  Sum_probs=28.2

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      .|+|.|++|+|||++|++|++.++.+++..+
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D   33 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIPHLDTD   33 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence            5899999999999999999999999877655

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.09  E-value=0.024  Score=62.39  Aligned_cols=37  Identities=22%  Similarity=0.132  Sum_probs=29.1

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      +.-|+|+|++|+|||+++..||..+   |..+..+++..+
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~  139 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF  139 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence            3458999999999999999999776   566666666543

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.09  E-value=0.00047  Score=65.04  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=27.4

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      |++.|+||+|||++|+.||+.+++.+  ++..+++
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~--i~~~~l~   34 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPH--ISTGDLL   34 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeE--EECcHHH
Confidence            78999999999999999999988765  4455443

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=97.08  E-value=0.002  Score=66.59  Aligned_cols=52  Identities=15%  Similarity=0.125  Sum_probs=41.5

Q ss_pred             CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCc
Q psy16204        415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGV  484 (577)
Q Consensus       415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~  484 (577)
                      +.-|++||++|++..            ...|.||..++.-.      .++++|..|+.++.|++.+..|.
T Consensus        88 ~~KV~II~~ae~m~~------------~AaNaLLK~LEEPp------~~t~fiLit~~~~~lLpTI~SRC  139 (261)
T PRK05818         88 GKKIYIIYGIEKLNK------------QSANSLLKLIEEPP------KNTYGIFTTRNENNILNTILSRC  139 (261)
T ss_pred             CCEEEEeccHhhhCH------------HHHHHHHHhhcCCC------CCeEEEEEECChHhCchHhhhhe
Confidence            356999999999976            56899999999865      45788888888888777666653

>PRK10867 signal recognition particle protein; Provisional

Probab=97.07  E-value=0.052  Score=59.87  Aligned_cols=37  Identities=19%  Similarity=0.119  Sum_probs=28.6

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCcc
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATEC----GTTFFNVSSSTL  283 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~l  283 (577)
                      +.-++|+|++|+|||+++-.||..+    |..+..+++..+
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~  140 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY  140 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence            4568999999999999777777654    566777777654

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.07  E-value=0.0048  Score=59.99  Aligned_cols=35  Identities=23%  Similarity=0.279  Sum_probs=27.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---C------CeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---G------TTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~------~~fv~v~~s~  282 (577)
                      .-++|+||||+|||++|..+|..+   +      ..+++++..+
T Consensus        20 ~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~   63 (226)
T cd01393          20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG   63 (226)
T ss_pred             cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence            347899999999999999998764   2      5667777653

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.07  E-value=0.0059  Score=59.84  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=19.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      +-++|.||.|+|||+++|.|+.
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHH
Confidence            4578999999999999999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=97.05  E-value=0.00062  Score=63.64  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=28.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      +.++|+|++|+|||++|+.||+.+|.+|+..+
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D   34 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD   34 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence            35889999999999999999999999987554

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.04  E-value=0.0081  Score=57.13  Aligned_cols=23  Identities=26%  Similarity=0.170  Sum_probs=20.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||.|+|||+|++.|+...
T Consensus        27 ~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          27 IVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999764

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG1485 Predicted ATPase [General function prediction only]

Probab=97.03  E-value=0.012  Score=63.14  Aligned_cols=30  Identities=20%  Similarity=0.081  Sum_probs=25.2

Q ss_pred             ccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        244 PEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       244 ~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      +..++|+.|||+-|+|||+|.-..-..+-.
T Consensus        62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~   91 (367)
T COG1485          62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPG   91 (367)
T ss_pred             CCCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence            456699999999999999999888776543

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.02  E-value=0.00056  Score=63.42  Aligned_cols=32  Identities=28%  Similarity=0.433  Sum_probs=26.7

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      |+|.||+|+|||++|+.|++.++..++  +..++
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~   32 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL   32 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence            578999999999999999999997665  44444

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=97.02  E-value=0.00046  Score=65.31  Aligned_cols=35  Identities=11%  Similarity=0.262  Sum_probs=30.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      -|+|.|+||+|||++|+.|++.++.+++.++...+
T Consensus         4 ~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~   38 (175)
T cd00227           4 IIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF   38 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence            58999999999999999999999888877665543

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>cd01394 radB RadB

Probab=97.02  E-value=0.01  Score=57.68  Aligned_cols=33  Identities=27%  Similarity=0.297  Sum_probs=27.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      -++++|+||+|||++|..+|.++   +.++++++..
T Consensus        21 i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e   56 (218)
T cd01394          21 VTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE   56 (218)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            48999999999999999999776   4677778764

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK14530 adenylate kinase; Provisional

Probab=97.00  E-value=0.00072  Score=66.16  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=26.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      .|+|.||||+|||++|+.||+.++.+++.+
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~   34 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT   34 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence            589999999999999999999998766533

>TIGR02012 tigrfam_recA protein RecA

Probab=96.99  E-value=0.0032  Score=66.67  Aligned_cols=35  Identities=23%  Similarity=0.167  Sum_probs=27.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      .-++++||||+|||+||-.++.++   +.+++++++..
T Consensus        56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~   93 (321)
T TIGR02012        56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH   93 (321)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence            357899999999999998777655   46677777654

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=96.98  E-value=0.021  Score=56.82  Aligned_cols=21  Identities=29%  Similarity=0.256  Sum_probs=18.8

Q ss_pred             eEEecCCCCChHHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .+|+||||+|||+|+-.+|-.
T Consensus         4 ~ll~g~~G~GKS~lal~la~~   24 (239)
T cd01125           4 SALVAPGGTGKSSLLLVLALA   24 (239)
T ss_pred             eEEEcCCCCCHHHHHHHHHHH
Confidence            489999999999999988865

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=96.97  E-value=0.0053  Score=57.99  Aligned_cols=62  Identities=19%  Similarity=0.218  Sum_probs=29.2

Q ss_pred             hhhhhHHHHHh-cCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCC
Q psy16204        403 INKNSLFQARC-YAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH  472 (577)
Q Consensus       403 ~~~~~~~~a~~-~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~  472 (577)
                      .++.+...+.. +.+.+|+||-+..+... +.+. ......+++.|....+..+      -.|+++.-+|+
T Consensus       128 ~~~~l~~~~~~~~~~~lvviD~l~~~~~~-~~~~-~~~~~~~~~~l~~la~~~~------~~vi~v~H~~K  190 (193)
T PF13481_consen  128 DLEELEAALKELYGPDLVVIDPLQSLHDG-DENS-NSAVAQLMQELKRLAKEYG------VAVILVHHTNK  190 (193)
T ss_dssp             HHHHHHHHHTT----SEEEEE-GGGG--S--TT--HHHHHHHHHHHHHHHHHH--------EEEEEEEE--
T ss_pred             HHHHHHHHHhhcCCCcEEEEcCHHHHhcC-CCCC-HHHHHHHHHHHHHHHHHcC------CEEEEEECCCC
Confidence            34455555666 67899999999999985 2222 2222455555554444333      23666665654

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=96.97  E-value=0.0062  Score=58.56  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=29.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      .+|+.|+||+|||++|..++.+++.+++++....
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~   36 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ   36 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence            4799999999999999999999988877776654

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=96.96  E-value=0.0015  Score=71.09  Aligned_cols=25  Identities=28%  Similarity=0.303  Sum_probs=22.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      -.|++||||||||+|++.|++....
T Consensus       171 R~lIvgppGvGKTTLaK~Ian~I~~  195 (416)
T PRK09376        171 RGLIVAPPKAGKTVLLQNIANSITT  195 (416)
T ss_pred             eEEEeCCCCCChhHHHHHHHHHHHh
Confidence            3799999999999999999998754

>PRK14531 adenylate kinase; Provisional

Probab=96.96  E-value=0.00073  Score=64.62  Aligned_cols=34  Identities=24%  Similarity=0.250  Sum_probs=28.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      .|++.||||+|||++++.||+.+|.++  +++.+++
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g~~~--is~gd~l   37 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHGLRH--LSTGDLL   37 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCe--EecccHH
Confidence            589999999999999999999998765  4555543

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=96.96  E-value=0.0092  Score=57.48  Aligned_cols=33  Identities=21%  Similarity=0.306  Sum_probs=28.8

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      +|++|++|+|||++|..++...+.+.+++....
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~   34 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAE   34 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccC
Confidence            589999999999999999998888888886554

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=96.94  E-value=0.00023  Score=74.89  Aligned_cols=60  Identities=20%  Similarity=0.120  Sum_probs=34.5

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCccc----c---ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMPEF----F---KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~~~----~---k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      -.|.|.+.+|..|.=.+..+......    .   -++||.|.||+|||.|.+.+++-.... +++++.
T Consensus        24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~   90 (331)
T PF00493_consen   24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGK   90 (331)
T ss_dssp             STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECC
T ss_pred             CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCce-EEECCC
Confidence            36788888776554444333222110    1   369999999999999999876544333 344443

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>KOG2543|consensus

Probab=96.93  E-value=0.0066  Score=65.84  Aligned_cols=66  Identities=14%  Similarity=-0.014  Sum_probs=53.8

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      +....+.+.+.++..|...+-. ... ..+..+.|||-.|||||.+.|.+-+.++.+.+.++|-+...
T Consensus         3 ~l~~~v~~Re~qi~~L~~Llg~-~~~-~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft   68 (438)
T KOG2543|consen    3 VLEPNVPCRESQIRRLKSLLGN-NSC-TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFT   68 (438)
T ss_pred             ccccCccchHHHHHHHHHHhCC-CCc-ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhcc
Confidence            3456788899999999988732 222 35667899999999999999999999999999999987643

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=96.91  E-value=0.0056  Score=61.26  Aligned_cols=32  Identities=16%  Similarity=0.255  Sum_probs=26.5

Q ss_pred             eEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      |+|.|+||+|||++|+.|++.+   +..++.++..
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D   36 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTD   36 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccH
Confidence            6899999999999999999987   4556666553

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=96.91  E-value=0.0012  Score=75.97  Aligned_cols=55  Identities=18%  Similarity=0.024  Sum_probs=41.0

Q ss_pred             cccccCcHHHHHHHHHHHHCcCCCccc----c---ceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPTIMPEF----F---KEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~----~---k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .-.|.|.+.+|..|.=.+..+......    .   -+|||.|.||||||.|.|.+++.+-..
T Consensus       285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~  346 (682)
T COG1241         285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRG  346 (682)
T ss_pred             cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCce
Confidence            456899999999887777543322111    1   369999999999999999999887544

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.91  E-value=0.0035  Score=63.65  Aligned_cols=42  Identities=21%  Similarity=0.282  Sum_probs=29.9

Q ss_pred             hhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC
Q psy16204        403 INKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN  455 (577)
Q Consensus       403 ~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~  455 (577)
                      .-+-+|.+|-+..|.|++|||.-+...           -.+..+.|..|..+.
T Consensus       142 qQRVAIARALaM~P~vmLFDEPTSALD-----------PElv~EVL~vm~~LA  183 (240)
T COG1126         142 QQRVAIARALAMDPKVMLFDEPTSALD-----------PELVGEVLDVMKDLA  183 (240)
T ss_pred             HHHHHHHHHHcCCCCEEeecCCcccCC-----------HHHHHHHHHHHHHHH
Confidence            445567778889999999999876543           145666676766655

>PRK06762 hypothetical protein; Provisional

Probab=96.90  E-value=0.00081  Score=62.55  Aligned_cols=33  Identities=30%  Similarity=0.374  Sum_probs=27.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSS  280 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~  280 (577)
                      .-|+|.|+||+|||++|+.|++.++..++.++.
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~   35 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ   35 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH
Confidence            347899999999999999999999655666654

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.90  E-value=0.014  Score=57.91  Aligned_cols=22  Identities=23%  Similarity=0.258  Sum_probs=19.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      +.++|.||.|+|||++.|.++.
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHH
Confidence            5689999999999999999983

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.89  E-value=0.00095  Score=62.54  Aligned_cols=32  Identities=19%  Similarity=0.253  Sum_probs=26.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      -+++.|+||+|||++|+.|++.+|...  +++.+
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~   36 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGD   36 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHH
Confidence            578999999999999999999988654  44443

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=96.89  E-value=0.0018  Score=66.51  Aligned_cols=25  Identities=24%  Similarity=0.182  Sum_probs=22.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.|+.||||||||++.|-||..+.
T Consensus       138 lntLiigpP~~GKTTlLRdiaR~~s  162 (308)
T COG3854         138 LNTLIIGPPQVGKTTLLRDIARLLS  162 (308)
T ss_pred             eeeEEecCCCCChHHHHHHHHHHhh
Confidence            3689999999999999999998764

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.89  E-value=0.022  Score=62.44  Aligned_cols=82  Identities=21%  Similarity=0.214  Sum_probs=47.6

Q ss_pred             hhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHC--cCCCccc---cceeEEecCCCCChHHHHHHHH
Q psy16204        194 FYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVL--PTIMPEF---FKEALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~--pl~~~~~---~k~ILL~GPpGtGKT~LAkaLA  268 (577)
                      ....|+.+.+++.+-............       .+.+.+.+.+..  +......   .+.++|.||+|||||+++..||
T Consensus       170 L~~~gv~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~L~~~l~~~~~~~~~~~~~i~~vGptGvGKTTt~~kLA  242 (424)
T PRK05703        170 LKRSGLSPEIAEKLLKLLLEHMPPRER-------TAWRYLLELLANMIPVRVEDILKQGGVVALVGPTGVGKTTTLAKLA  242 (424)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHHhCccccccccCCcEEEEECCCCCCHHHHHHHHH
Confidence            346788888887766655433221111       234444444322  1111111   2468999999999999988887


Q ss_pred             HHh-----CCeEEEEecCc
Q psy16204        269 TEC-----GTTFFNVSSST  282 (577)
Q Consensus       269 ~el-----~~~fv~v~~s~  282 (577)
                      ..+     +..+..+++..
T Consensus       243 ~~~~~~~~g~~V~li~~D~  261 (424)
T PRK05703        243 ARYALLYGKKKVALITLDT  261 (424)
T ss_pred             HHHHHhcCCCeEEEEECCc
Confidence            654     24566666654

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=96.88  E-value=0.0034  Score=68.98  Aligned_cols=65  Identities=20%  Similarity=0.277  Sum_probs=43.1

Q ss_pred             CCCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChH
Q psy16204        182 DGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKT  261 (577)
Q Consensus       182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT  261 (577)
                      ..-+.+++...+..+.|++|+..+                    .......|...+.+  .  +...++++.||+|||||
T Consensus       168 ~~FT~dEWid~LlrSiG~~P~~~~--------------------~r~k~~~L~rl~~f--v--e~~~Nli~lGp~GTGKT  223 (449)
T TIGR02688       168 KEFTLEEWIDVLIRSIGYEPEGFE--------------------ARQKLLLLARLLPL--V--EPNYNLIELGPKGTGKS  223 (449)
T ss_pred             hhcCHHHHHHHHHHhcCCCcccCC--------------------hHHHHHHHHhhHHH--H--hcCCcEEEECCCCCCHH
Confidence            345577888888899999876432                    12222233332211  1  12258999999999999


Q ss_pred             HHHHHHHHH
Q psy16204        262 MLAKAVATE  270 (577)
Q Consensus       262 ~LAkaLA~e  270 (577)
                      .||.+|+..
T Consensus       224 hla~~l~~~  232 (449)
T TIGR02688       224 YIYNNLSPY  232 (449)
T ss_pred             HHHHHHhHH
Confidence            999998876

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=96.88  E-value=0.0016  Score=67.85  Aligned_cols=37  Identities=19%  Similarity=0.278  Sum_probs=31.3

Q ss_pred             CccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        243 MPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       243 ~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      .......|.|.|++|||||++++.||+.+|++|+.++
T Consensus       129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D  165 (309)
T PRK08154        129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN  165 (309)
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence            3344467999999999999999999999999998443

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=96.88  E-value=0.0007  Score=65.96  Aligned_cols=49  Identities=20%  Similarity=0.282  Sum_probs=38.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM  301 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~  301 (577)
                      .+|.|.|++|+|||++.|+||+.++.+|+-.+.  ++++..|   ..+.++|+.
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~--~Ie~~~g---~sI~eIF~~   51 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ--EIEKRTG---MSIAEIFEE   51 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH--HHHHHHC---cCHHHHHHH
Confidence            468999999999999999999999999976553  4554444   446666664

>KOG3347|consensus

Probab=96.88  E-value=0.00077  Score=64.99  Aligned_cols=32  Identities=31%  Similarity=0.516  Sum_probs=28.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      .+||+.|.||||||+++.+||...+.+++.++
T Consensus         8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is   39 (176)
T KOG3347|consen    8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS   39 (176)
T ss_pred             CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence            48999999999999999999999998876554

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=96.87  E-value=0.0038  Score=61.07  Aligned_cols=34  Identities=18%  Similarity=0.150  Sum_probs=26.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~  282 (577)
                      -+.|+||||+|||++|..++..+         +...++++..+
T Consensus        21 i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~   63 (235)
T cd01123          21 ITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG   63 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence            47899999999999999998553         24667777654

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.86  E-value=0.019  Score=62.60  Aligned_cols=87  Identities=11%  Similarity=0.046  Sum_probs=56.6

Q ss_pred             hhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCc-----cccceeEEecCCCCChHHHHHHHH
Q psy16204        194 FYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMP-----EFFKEALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~-----~~~k~ILL~GPpGtGKT~LAkaLA  268 (577)
                      ....|+.+..+..+-+......+....   .+.+++...+.+.+..-+..+     ...+.++|.||+|||||+++..||
T Consensus       151 L~~~gV~~~~~~~l~~~~~~~~~~~~~---~~~~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvGKTTt~akLA  227 (407)
T PRK12726        151 LKGRGISDTYVADFMQAGRKQFKQVET---AHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLG  227 (407)
T ss_pred             HHHcCCCHHHHHHHHHHHHHhcccccc---ccHHHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCCHHHHHHHHH
Confidence            345777877777776666555444332   335778888888775422111     112458999999999999999998


Q ss_pred             HHh---CCeEEEEecCcc
Q psy16204        269 TEC---GTTFFNVSSSTL  283 (577)
Q Consensus       269 ~el---~~~fv~v~~s~l  283 (577)
                      ..+   +..+..+++..+
T Consensus       228 ~~l~~~g~~V~lItaDty  245 (407)
T PRK12726        228 WQLLKQNRTVGFITTDTF  245 (407)
T ss_pred             HHHHHcCCeEEEEeCCcc
Confidence            765   445555666543

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.85  E-value=0.043  Score=53.81  Aligned_cols=34  Identities=24%  Similarity=0.233  Sum_probs=26.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      ..++++|+||+|||+++..++.+.   +.+.++++..
T Consensus        21 ~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e   57 (229)
T TIGR03881        21 FFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE   57 (229)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            468999999999999999877543   5567777764

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK13946 shikimate kinase; Provisional

Probab=96.85  E-value=0.00089  Score=64.20  Aligned_cols=33  Identities=21%  Similarity=0.396  Sum_probs=29.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSS  280 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~  280 (577)
                      +.|+|.|.+|||||++++.||+.+|.+|+..+.
T Consensus        11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~   43 (184)
T PRK13946         11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT   43 (184)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence            579999999999999999999999999876653

>KOG2383|consensus

Probab=96.84  E-value=0.015  Score=63.62  Aligned_cols=27  Identities=33%  Similarity=0.222  Sum_probs=22.8

Q ss_pred             ccccceeEEecCCCCChHHHHHHHHHH
Q psy16204        244 PEFFKEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       244 ~~~~k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      +..++|+.|||.-|||||+|.-..-.+
T Consensus       111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~  137 (467)
T KOG2383|consen  111 PGPPKGLYLYGSVGCGKTMLMDLFYDA  137 (467)
T ss_pred             CCCCceEEEecccCcchhHHHHHHhhc
Confidence            455799999999999999998876544

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.00039  Score=74.60  Aligned_cols=90  Identities=11%  Similarity=-0.001  Sum_probs=75.7

Q ss_pred             cccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCccc---
Q psy16204        318 GVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQ---  394 (577)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  394 (577)
                      +.+.+.-.+++|-..++.++++++.-+-+++.-++..|++||.|.++|++||+||+..+.+-+..+..+|....+.+   
T Consensus       144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq  223 (406)
T COG1222         144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ  223 (406)
T ss_pred             cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence            34557777888899999999999999999999999999999999999999999999998888888888888777654   


Q ss_pred             CCCCcchhhhhhh
Q psy16204        395 SHEGHSGRINKNS  407 (577)
Q Consensus       395 ~~~~d~~~~~~~~  407 (577)
                      .|+|+.-++.+++
T Consensus       224 KYiGEGaRlVRel  236 (406)
T COG1222         224 KYIGEGARLVREL  236 (406)
T ss_pred             HHhccchHHHHHH
Confidence            3466655555555

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.83  E-value=0.002  Score=65.72  Aligned_cols=26  Identities=23%  Similarity=0.267  Sum_probs=23.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      ..++|.||+|||||+|++.+++.+..
T Consensus        17 qr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          17 QRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccc
Confidence            35899999999999999999998765

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.83  E-value=0.00097  Score=58.02  Aligned_cols=22  Identities=32%  Similarity=0.286  Sum_probs=20.9

Q ss_pred             eEEecCCCCChHHHHHHHHHHh
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      |+|.|+||||||++|+.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999997

...

>KOG0477|consensus

Probab=96.82  E-value=0.0012  Score=74.87  Aligned_cols=58  Identities=16%  Similarity=0.063  Sum_probs=45.1

Q ss_pred             cccCcHHHHHHHHHHHHCcCCCcccc-------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        222 KVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       222 dIiG~~~ak~~L~e~l~~pl~~~~~~-------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      .|.|...+|..+.-++..+..+..--       -++||+|.|||||+.+.|.+++.....++...
T Consensus       450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTG  514 (854)
T KOG0477|consen  450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTG  514 (854)
T ss_pred             hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEecc
Confidence            68999999999998886644332111       35999999999999999999998877665543

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.81  E-value=0.016  Score=54.28  Aligned_cols=33  Identities=30%  Similarity=0.283  Sum_probs=27.7

Q ss_pred             eEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      +++.|+||+|||+++..+|..+   +..+..+++..
T Consensus         3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~   38 (173)
T cd03115           3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT   38 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence            6899999999999999998876   56677777764

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=96.81  E-value=0.017  Score=58.95  Aligned_cols=53  Identities=15%  Similarity=0.066  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe------EEEEecCcc
Q psy16204        229 AKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT------FFNVSSSTL  283 (577)
Q Consensus       229 ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~------fv~v~~s~l  283 (577)
                      ..+.|.+++..+-.  ..+..|.|+|+=|+|||++.+.+-+++.-.      ++++++-.+
T Consensus         4 ~a~~la~~I~~~~~--~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~   62 (325)
T PF07693_consen    4 YAKALAEIIKNPDS--DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEY   62 (325)
T ss_pred             HHHHHHHHHhccCC--CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccC
Confidence            34556666654321  334578999999999999999999888644      666766543

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>PRK04328 hypothetical protein; Provisional

Probab=96.81  E-value=0.037  Score=55.94  Aligned_cols=35  Identities=20%  Similarity=0.223  Sum_probs=27.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH---hCCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE---CGTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e---l~~~fv~v~~s~  282 (577)
                      ..+|++|+||+|||.+|-.++.+   .|-+.++++..+
T Consensus        24 s~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee   61 (249)
T PRK04328         24 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE   61 (249)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence            45899999999999999876654   256777777654

>PRK10536 hypothetical protein; Provisional

Probab=96.81  E-value=0.0053  Score=63.49  Aligned_cols=46  Identities=24%  Similarity=0.199  Sum_probs=36.2

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHH
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      ..+.-|-+.......+..++..       ..-+++.||+|||||+||.++|.+
T Consensus        52 ~~~~~i~p~n~~Q~~~l~al~~-------~~lV~i~G~aGTGKT~La~a~a~~   97 (262)
T PRK10536         52 RDTSPILARNEAQAHYLKAIES-------KQLIFATGEAGCGKTWISAAKAAE   97 (262)
T ss_pred             cCCccccCCCHHHHHHHHHHhc-------CCeEEEECCCCCCHHHHHHHHHHH
Confidence            4566777888777777776632       136889999999999999999985

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.79  E-value=0.002  Score=62.78  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=20.9

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +++.||+|+|||+++++++..+.
T Consensus         4 ilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            78999999999999999988764

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK02496 adk adenylate kinase; Provisional

Probab=96.77  E-value=0.0012  Score=62.70  Aligned_cols=29  Identities=17%  Similarity=0.131  Sum_probs=25.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      -+++.||||+|||++|+.||+.++++.+.
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~   31 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS   31 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence            48899999999999999999999876543

>PRK14528 adenylate kinase; Provisional

Probab=96.77  E-value=0.0013  Score=63.42  Aligned_cols=30  Identities=20%  Similarity=0.193  Sum_probs=26.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      +.+++.||||+|||++|+.||+.++.+.+.
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is   31 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS   31 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence            468999999999999999999999977644

>KOG1968|consensus

Probab=96.76  E-value=0.0022  Score=75.71  Aligned_cols=39  Identities=31%  Similarity=0.296  Sum_probs=35.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKY  287 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~  287 (577)
                      .+|++||||+|||+.|..+|+++|..++++++++..+++
T Consensus       359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~  397 (871)
T KOG1968|consen  359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKK  397 (871)
T ss_pred             HHHhcCCCCCCchhhHhhhhhhcccceeecCcccccccc
Confidence            369999999999999999999999999999999886654

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.76  E-value=0.0062  Score=64.71  Aligned_cols=35  Identities=23%  Similarity=0.190  Sum_probs=28.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      .-++++||||+|||+||-.++.++   +...++++...
T Consensus        56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~   93 (325)
T cd00983          56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH   93 (325)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence            347899999999999999887654   56777888754

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.75  E-value=0.0014  Score=62.63  Aligned_cols=33  Identities=15%  Similarity=0.400  Sum_probs=29.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSS  280 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~  280 (577)
                      +.|+|.|++|+|||++++.||..++.+|+..+.
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~   37 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ   37 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence            468999999999999999999999999877664

>KOG0652|consensus

Probab=96.75  E-value=0.00068  Score=70.53  Aligned_cols=90  Identities=12%  Similarity=0.062  Sum_probs=80.9

Q ss_pred             cccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccC--
Q psy16204        318 GVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQS--  395 (577)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  395 (577)
                      +.+....++++|..+++.++.++++-+-.+...++..|+.||-|.+.|+|||+|++.++.+-...++.+|++--++|.  
T Consensus       164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ  243 (424)
T KOG0652|consen  164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ  243 (424)
T ss_pred             cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence            445677888899999999999999999999999999999999999999999999999999999999999999988874  


Q ss_pred             -CCCcchhhhhhh
Q psy16204        396 -HEGHSGRINKNS  407 (577)
Q Consensus       396 -~~~d~~~~~~~~  407 (577)
                       |+||.-++.+++
T Consensus       244 MfIGdGAkLVRDA  256 (424)
T KOG0652|consen  244 MFIGDGAKLVRDA  256 (424)
T ss_pred             hhhcchHHHHHHH
Confidence             477777777766

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.74  E-value=0.01  Score=57.66  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=21.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +-++|.||+|+|||+|++.|.+...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~~   29 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEHP   29 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4588999999999999999988753

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.72  E-value=0.0014  Score=66.08  Aligned_cols=33  Identities=12%  Similarity=0.192  Sum_probs=27.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      .|+|.||||+|||++|+.||+.++++++  +..++
T Consensus         8 rIvl~G~PGsGK~T~a~~La~~~g~~~i--s~gdl   40 (229)
T PTZ00088          8 KIVLFGAPGVGKGTFAEILSKKENLKHI--NMGNI   40 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEE--ECChH
Confidence            4899999999999999999999987654  44444

>TIGR01351 adk adenylate kinases

Probab=96.71  E-value=0.0013  Score=64.04  Aligned_cols=32  Identities=28%  Similarity=0.351  Sum_probs=26.7

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      |++.||||+|||++|+.||+.+|++.+  ++.++
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~i--s~gdl   33 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHI--STGDL   33 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCee--ehhHH
Confidence            789999999999999999999987654  44444

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=96.70  E-value=0.036  Score=54.34  Aligned_cols=35  Identities=20%  Similarity=0.174  Sum_probs=28.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      ..+++.|+||+|||.+|..++.+.   +.+.++++..+
T Consensus        17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~   54 (224)
T TIGR03880        17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE   54 (224)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            458999999999999999887553   67788887764

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK13808 adenylate kinase; Provisional

Probab=96.70  E-value=0.0051  Score=65.55  Aligned_cols=34  Identities=18%  Similarity=0.287  Sum_probs=27.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      .|||+||||+|||++++.||+.++++  .++..+++
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~--~is~gdlL   35 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIV--QLSTGDML   35 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc--eecccHHH
Confidence            37999999999999999999999874  45555554

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.70  E-value=0.03  Score=55.10  Aligned_cols=34  Identities=24%  Similarity=0.206  Sum_probs=23.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      +-++|.||+|||||+.+--||..+   +..+--+.+.
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D   38 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD   38 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence            568999999999999888787665   3444444443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK06696 uridine kinase; Validated

Probab=96.69  E-value=0.0042  Score=61.33  Aligned_cols=55  Identities=18%  Similarity=0.108  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204        228 EAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT  284 (577)
Q Consensus       228 ~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~  284 (577)
                      +.++.|.+.+.-.  ....+.-|.+.|++|+|||++|+.|+..+   |.+++.++..++.
T Consensus         5 ~~~~~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~   62 (223)
T PRK06696          5 QLIKELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH   62 (223)
T ss_pred             HHHHHHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence            4455555555321  12233468899999999999999999999   6788888887763

>PRK04182 cytidylate kinase; Provisional

Probab=96.68  E-value=0.0016  Score=60.48  Aligned_cols=29  Identities=24%  Similarity=0.298  Sum_probs=26.2

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .|+|.|++|+|||++|+.||+.+|.+++.
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~~id   30 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLKHVS   30 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence            37899999999999999999999988754

>PRK13948 shikimate kinase; Provisional

Probab=96.68  E-value=0.0018  Score=63.10  Aligned_cols=42  Identities=14%  Similarity=0.120  Sum_probs=33.8

Q ss_pred             ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccccc
Q psy16204        246 FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRG  289 (577)
Q Consensus       246 ~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G  289 (577)
                      .+..|+|.|.+|+|||++++.||+.++.+|+..+  .+..+..|
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g   50 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG   50 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence            3467999999999999999999999999998544  45444444

>PRK00279 adk adenylate kinase; Reviewed

Probab=96.68  E-value=0.0015  Score=63.83  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=27.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      -|++.||||+|||++|+.||+.++++.  ++..++.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~--is~~dl~   35 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPH--ISTGDML   35 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcE--EECCccH
Confidence            379999999999999999999998654  4555553

>PLN02200 adenylate kinase family protein

Probab=96.66  E-value=0.0022  Score=64.49  Aligned_cols=37  Identities=16%  Similarity=0.168  Sum_probs=30.8

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      +.-|++.|+||+|||++|+.||+.+|++  .++++++..
T Consensus        43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR   79 (234)
T PLN02200         43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR   79 (234)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence            3568999999999999999999999865  577776643

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.63  E-value=0.008  Score=60.95  Aligned_cols=23  Identities=35%  Similarity=0.398  Sum_probs=21.8

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      |+|.|+||+|||++|+.||+++.
T Consensus         4 iIlTGyPgsGKTtfakeLak~L~   26 (261)
T COG4088           4 IILTGYPGSGKTTFAKELAKELR   26 (261)
T ss_pred             EEEecCCCCCchHHHHHHHHHHH
Confidence            78999999999999999999985

>TIGR00959 ffh signal recognition particle protein

Probab=96.63  E-value=0.095  Score=57.71  Aligned_cols=37  Identities=22%  Similarity=0.152  Sum_probs=29.2

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCcc
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATEC----GTTFFNVSSSTL  283 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~l  283 (577)
                      +.-++|.|++|+|||++|..+|..+    |..+..++|..+
T Consensus        99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~  139 (428)
T TIGR00959        99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY  139 (428)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence            4568999999999999988887663    467777777653

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=96.62  E-value=0.031  Score=54.21  Aligned_cols=21  Identities=14%  Similarity=0.134  Sum_probs=19.4

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -++|.||.|+|||++.+.|+.
T Consensus        31 ~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          31 LLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             EEEEECCCCCccHHHHHHHHH
Confidence            489999999999999999994

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK06547 hypothetical protein; Provisional

Probab=96.61  E-value=0.0018  Score=62.44  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=28.3

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      ..-|++.|++|+|||++|+.|++.++.+++.++
T Consensus        15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d   47 (172)
T PRK06547         15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD   47 (172)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence            356889999999999999999999988876543

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=96.61  E-value=0.013  Score=60.65  Aligned_cols=25  Identities=24%  Similarity=0.175  Sum_probs=23.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ++++++||+|+|||++.+.++..+.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~  136 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILS  136 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccC
Confidence            6899999999999999999998875

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=96.61  E-value=0.026  Score=54.32  Aligned_cols=19  Identities=16%  Similarity=0.204  Sum_probs=18.0

Q ss_pred             eEEecCCCCChHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA  268 (577)
                      ++|+||.|.|||++.|.++
T Consensus         2 ~~ltG~N~~GKst~l~~i~   20 (185)
T smart00534        2 VIITGPNMGGKSTYLRQVG   20 (185)
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            6899999999999999998

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.60  E-value=0.069  Score=53.08  Aligned_cols=32  Identities=28%  Similarity=0.342  Sum_probs=24.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      -++|.||+|+||++|+++|-+.. --.+.|+..
T Consensus         6 l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~T   37 (191)
T COG0194           6 LIVLSGPSGVGKSTLVKALLEDD-KLRFSVSAT   37 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc-CeEEEEEec
Confidence            36789999999999999999887 333445544

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.60  E-value=0.032  Score=56.80  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=26.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      ..+|++|+||+|||++|-.+|.+.   |-+.++++..
T Consensus        37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E   73 (259)
T TIGR03878        37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE   73 (259)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            358999999999999999887653   4566666653

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK04296 thymidine kinase; Provisional

Probab=96.59  E-value=0.013  Score=56.84  Aligned_cols=31  Identities=13%  Similarity=0.051  Sum_probs=24.0

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---CCeEEEEe
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVS  279 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~  279 (577)
                      -+|++||+|+|||+++..++..+   +..++.+.
T Consensus         4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k   37 (190)
T PRK04296          4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK   37 (190)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            36899999999999999888776   44555553

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.57  E-value=0.1  Score=55.20  Aligned_cols=91  Identities=14%  Similarity=0.161  Sum_probs=50.6

Q ss_pred             hHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCC-------C-ccccceeEEecCCCC
Q psy16204        187 QDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTI-------M-PEFFKEALERHSHGT  258 (577)
Q Consensus       187 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~-------~-~~~~k~ILL~GPpGt  258 (577)
                      +++++.+ ...++.+++.+.+-+.+......   .++...+.+++.|.+.+..-+.       . ...+.-++|.||+|+
T Consensus        50 ~~l~~~L-~~~dv~~~~a~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGs  125 (318)
T PRK10416         50 EELEELL-IEADVGVETTEEIIEELRERVKR---KNLKDPEELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGV  125 (318)
T ss_pred             HHHHHHH-HHCCCCHHHHHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCC
Confidence            3443333 45677777766655544333211   1222334455555554432111       1 112345889999999


Q ss_pred             ChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        259 GKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       259 GKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      |||+++..||..+   +..+..+++.
T Consensus       126 GKTTt~~kLA~~l~~~g~~V~Li~~D  151 (318)
T PRK10416        126 GKTTTIGKLAHKYKAQGKKVLLAAGD  151 (318)
T ss_pred             cHHHHHHHHHHHHHhcCCeEEEEecC
Confidence            9999999999876   3445555543

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=96.56  E-value=0.037  Score=53.69  Aligned_cols=21  Identities=19%  Similarity=0.186  Sum_probs=19.4

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .++|.||.|+|||++.|.|+.
T Consensus        30 ~~~ltG~Ng~GKStll~~i~~   50 (200)
T cd03280          30 VLVITGPNAGGKTVTLKTLGL   50 (200)
T ss_pred             EEEEECCCCCChHHHHHHHHH
Confidence            489999999999999999983

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.56  E-value=0.13  Score=53.23  Aligned_cols=36  Identities=22%  Similarity=0.214  Sum_probs=27.6

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      ++-++|.||+|+|||+++..||..+   |..+.-+++..
T Consensus        72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~  110 (272)
T TIGR00064        72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT  110 (272)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            3568889999999999999888766   45566666553

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.56  E-value=0.0028  Score=63.76  Aligned_cols=51  Identities=18%  Similarity=0.090  Sum_probs=35.4

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ++++++-.....+.+.+++....+   ...++|+.|++|+|||++++++...+.
T Consensus       102 sle~l~~~~~~~~~~~~~l~~~v~---~~~~ili~G~tGSGKTT~l~all~~i~  152 (270)
T PF00437_consen  102 SLEDLGESGSIPEEIAEFLRSAVR---GRGNILISGPTGSGKTTLLNALLEEIP  152 (270)
T ss_dssp             CHCCCCHTHHCHHHHHHHHHHCHH---TTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred             cHhhccCchhhHHHHHHHHhhccc---cceEEEEECCCccccchHHHHHhhhcc
Confidence            455555544444556666544321   226899999999999999999998864

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>KOG0482|consensus

Probab=96.55  E-value=0.0035  Score=69.93  Aligned_cols=53  Identities=15%  Similarity=0.041  Sum_probs=40.6

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCcc----cc---ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMPE----FF---KEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~~----~~---k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      -+|.|..++|..|.-.++....+..    ..   -+|||.|.||+-|+.|.+.|.+-.-.
T Consensus       342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapR  401 (721)
T KOG0482|consen  342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPR  401 (721)
T ss_pred             hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcc
Confidence            4789999999999888866432211    11   25899999999999999999876543

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=96.54  E-value=0.0021  Score=62.68  Aligned_cols=28  Identities=25%  Similarity=0.341  Sum_probs=25.7

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      |-+.||||||||++|+.||+.+|.+++.
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~gl~~vs   30 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLGLKLVS   30 (179)
T ss_pred             EEeccCCCCChhHHHHHHHHHhCCceee
Confidence            5688999999999999999999999865

>KOG1051|consensus

Probab=96.54  E-value=0.024  Score=67.10  Aligned_cols=76  Identities=22%  Similarity=0.293  Sum_probs=48.7

Q ss_pred             cccccCc-HHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC----------CeEEEEecCcccc--c
Q psy16204        220 WNKVAGL-TEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG----------TTFFNVSSSTLTS--K  286 (577)
Q Consensus       220 ~~dIiG~-~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~----------~~fv~v~~s~l~~--k  286 (577)
                      ++-++|. ++..+++.+.+.....     ++-+|.|.||+|||.++.-+|+...          ..++.++...+..  +
T Consensus       185 ldPvigr~deeirRvi~iL~Rrtk-----~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~  259 (898)
T KOG1051|consen  185 LDPVIGRHDEEIRRVIEILSRKTK-----NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAK  259 (898)
T ss_pred             CCCccCCchHHHHHHHHHHhccCC-----CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcc
Confidence            5667777 7777777777744222     5779999999999999999997752          2344444443332  4


Q ss_pred             cccchHHHHHHHHH
Q psy16204        287 YRGESEKLVRLLFE  300 (577)
Q Consensus       287 ~~G~~e~~vr~lF~  300 (577)
                      +.|+.|..++.+..
T Consensus       260 ~rge~E~rlk~l~k  273 (898)
T KOG1051|consen  260 RRGEFEERLKELLK  273 (898)
T ss_pred             cchHHHHHHHHHHH
Confidence            44455555444443

>PRK04040 adenylate kinase; Provisional

Probab=96.54  E-value=0.0027  Score=61.88  Aligned_cols=29  Identities=17%  Similarity=0.172  Sum_probs=25.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh--CCeEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC--GTTFF  276 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el--~~~fv  276 (577)
                      +-|+++|+||||||++++.+++.+  +..++
T Consensus         3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~   33 (188)
T PRK04040          3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV   33 (188)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence            468999999999999999999999  55554

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.54  E-value=0.022  Score=58.08  Aligned_cols=160  Identities=15%  Similarity=0.130  Sum_probs=83.1

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC-CeE------EEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG-TTF------FNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNG  322 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~-~~f------v~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~  322 (577)
                      .-|.||+|||||++.|.+-.-.. .+-      +.+++.++.+.  .-+-..+|.-..|              +.-.+|-
T Consensus        36 TAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~--~~d~~~lRr~vGM--------------VFQkPnP   99 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP--KVDVVELRRRVGM--------------VFQKPNP   99 (253)
T ss_pred             EEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC--CCCHHHHHHHhee--------------eccCCCC
Confidence            46889999999999999865433 222      23334444332  1122334433332              3345788


Q ss_pred             CCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcc----hhhhhhhhcccCCCCccc--CC
Q psy16204        323 EPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWS----MVAVVATHFTWGKKGTCQ--SH  396 (577)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~  396 (577)
                      ||-++.+|                                +.|++---|...-.    +...+..-.=|.+.+..+  +-
T Consensus       100 Fp~SIydN--------------------------------VayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa  147 (253)
T COG1117         100 FPMSIYDN--------------------------------VAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSA  147 (253)
T ss_pred             CCchHHHH--------------------------------HHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCc
Confidence            88888776                                11111111111111    111222222344444333  22


Q ss_pred             CCcchh-hhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCc
Q psy16204        397 EGHSGR-INKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP  473 (577)
Q Consensus       397 ~~d~~~-~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p  473 (577)
                      .+-+|+ .-+=++.++-...|.||++||--+...        .....-+.+|+..+..        +-.+||.|-|..
T Consensus       148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALD--------PIsT~kIEeLi~eLk~--------~yTIviVTHnmq  209 (253)
T COG1117         148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD--------PISTLKIEELITELKK--------KYTIVIVTHNMQ  209 (253)
T ss_pred             cCCChhHHHHHHHHHHHhcCCcEEEecCcccccC--------chhHHHHHHHHHHHHh--------ccEEEEEeCCHH
Confidence            443333 445578888889999999999754432        1222335566665552        224777776643

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=96.53  E-value=0.044  Score=60.71  Aligned_cols=35  Identities=23%  Similarity=0.213  Sum_probs=28.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC----GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~  282 (577)
                      ..+|++|+||+|||++|..++.+.    |-+.++++..+
T Consensus        32 s~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee   70 (509)
T PRK09302         32 RPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE   70 (509)
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence            458999999999999999877542    56788887764

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=96.51  E-value=0.0024  Score=58.90  Aligned_cols=28  Identities=25%  Similarity=0.313  Sum_probs=25.6

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      |.+.|++|+|||++|+.||+.++.+++.
T Consensus         3 I~i~G~~GSGKstia~~la~~lg~~~~~   30 (171)
T TIGR02173         3 ITISGPPGSGKTTVAKILAEKLSLKLIS   30 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence            6899999999999999999999988654

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.51  E-value=0.011  Score=61.76  Aligned_cols=24  Identities=42%  Similarity=0.490  Sum_probs=22.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +++|+.|++|+|||+++++|...+
T Consensus       133 ~~ilI~G~tGSGKTTll~al~~~i  156 (299)
T TIGR02782       133 KNILVVGGTGSGKTTLANALLAEI  156 (299)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999999886

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=96.50  E-value=0.0019  Score=59.51  Aligned_cols=31  Identities=29%  Similarity=0.333  Sum_probs=25.6

Q ss_pred             EecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        252 ERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       252 L~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      +.||||+|||++|+.||+.+|.  +.++..+++
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ll   31 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLL   31 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcCc--ceechHHHH
Confidence            5799999999999999999975  456665554

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.48  E-value=0.031  Score=57.90  Aligned_cols=34  Identities=18%  Similarity=0.092  Sum_probs=26.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      ..++|+|++|+|||++++.|+..+   +.....+++.
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D  112 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD  112 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecC
Confidence            468999999999999999998876   2344445443

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.47  E-value=0.039  Score=53.49  Aligned_cols=21  Identities=19%  Similarity=0.188  Sum_probs=18.7

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -+.|.||.|+|||+|.+++..
T Consensus        23 ~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          23 LVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            378999999999999999864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=96.45  E-value=0.0028  Score=64.47  Aligned_cols=34  Identities=26%  Similarity=0.284  Sum_probs=26.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh-CCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC-GTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el-~~~fv~v~~s~l  283 (577)
                      .-++|.|+||||||++|+.|++.+ +..+  ++...+
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~~~~~--l~~D~~   37 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNPKAVN--VNRDDL   37 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCCEE--EeccHH
Confidence            357899999999999999999998 5544  444433

>PRK08233 hypothetical protein; Provisional

Probab=96.45  E-value=0.0033  Score=58.64  Aligned_cols=32  Identities=16%  Similarity=0.141  Sum_probs=25.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC-CeEEEEec
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG-TTFFNVSS  280 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~-~~fv~v~~  280 (577)
                      -|.+.|+||+|||++|+.|+..++ ..++.++.
T Consensus         5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~   37 (182)
T PRK08233          5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFDR   37 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence            467889999999999999999986 44544443

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.43  E-value=0.016  Score=59.75  Aligned_cols=79  Identities=22%  Similarity=0.173  Sum_probs=47.0

Q ss_pred             hhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCC----Cc---cccceeEEecCCCCChHHHHHHH
Q psy16204        195 YSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTI----MP---EFFKEALERHSHGTGKTMLAKAV  267 (577)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~----~~---~~~k~ILL~GPpGtGKT~LAkaL  267 (577)
                      ...|+++.+++.+.+.+...         ...+.+...+.+.|..-+.    ..   .....++|.||+|+|||+++..|
T Consensus       144 ~~~gv~~~la~~L~~~l~~~---------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kL  214 (282)
T TIGR03499       144 LRAGVSPELARELLEKLPER---------ADAEDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKL  214 (282)
T ss_pred             HHCCCCHHHHHHHHHHhhcc---------CCHHHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHH
Confidence            35678887777666544321         2233344444444422111    11   12246889999999999999999


Q ss_pred             HHHh----C-CeEEEEecCc
Q psy16204        268 ATEC----G-TTFFNVSSST  282 (577)
Q Consensus       268 A~el----~-~~fv~v~~s~  282 (577)
                      |..+    + ..+..+.+..
T Consensus       215 a~~~~~~~g~~~V~li~~D~  234 (282)
T TIGR03499       215 AARFVLEHGNKKVALITTDT  234 (282)
T ss_pred             HHHHHHHcCCCeEEEEECCc
Confidence            8765    3 5666666554

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.43  E-value=0.02  Score=53.88  Aligned_cols=23  Identities=22%  Similarity=0.193  Sum_probs=20.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+.|.||.|+|||+|.+.|+...
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14527 adenylate kinase; Provisional

Probab=96.42  E-value=0.0021  Score=61.64  Aligned_cols=28  Identities=29%  Similarity=0.253  Sum_probs=25.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      .-+++.||||+|||++|+.||+.++...
T Consensus         7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~   34 (191)
T PRK14527          7 KVVIFLGPPGAGKGTQAERLAQELGLKK   34 (191)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence            4589999999999999999999988654

>KOG0480|consensus

Probab=96.41  E-value=0.011  Score=67.31  Aligned_cols=57  Identities=18%  Similarity=0.067  Sum_probs=42.1

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccc----c---ceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEF----F---KEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~----~---k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      -.+-.|.|.+.+|.-|.=.+-.+......    .   -+||+.|.||+||+.+.++++.-+-..
T Consensus       342 Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~  405 (764)
T KOG0480|consen  342 SLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS  405 (764)
T ss_pred             hhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcc
Confidence            45678999999999877766543322111    1   369999999999999999998766544

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.41  E-value=0.0039  Score=59.07  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=17.2

Q ss_pred             eEEecCCCCChHHHHHHHHHHh
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+++||||||||+++..++..+
T Consensus        20 ~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   20 TLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             EEEE-STTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHh
Confidence            7999999999998766666665

>PRK01184 hypothetical protein; Provisional

Probab=96.40  E-value=0.003  Score=59.88  Aligned_cols=29  Identities=24%  Similarity=0.221  Sum_probs=24.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      -|+|.|+||+|||++++ +++++|++++..
T Consensus         3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~   31 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM   31 (184)
T ss_pred             EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence            57899999999999998 788999877544

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=96.40  E-value=0.015  Score=62.26  Aligned_cols=35  Identities=14%  Similarity=0.205  Sum_probs=29.5

Q ss_pred             eEEecCCCCChHHHHHHHHHHh----CCeEEEEecCccc
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC----GTTFFNVSSSTLT  284 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~l~  284 (577)
                      +.|.|+||+|||+++++|+..+    |..+..++..+++
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i   40 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII   40 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence            4689999999999999999665    4678888888876

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.39  E-value=0.0027  Score=61.67  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=26.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      .|+|.||||+|||++|+.||+.  .++..++..++
T Consensus         2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~   34 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDI   34 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHH
Confidence            4799999999999999999999  44555655443

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.39  E-value=0.018  Score=59.04  Aligned_cols=49  Identities=20%  Similarity=0.221  Sum_probs=36.9

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ..+++++-.....+.|.+++..+      ...+|+.||+|+|||++++++...+.
T Consensus        57 ~~l~~lg~~~~~~~~l~~~~~~~------~GlilisG~tGSGKTT~l~all~~i~  105 (264)
T cd01129          57 LDLEKLGLKPENLEIFRKLLEKP------HGIILVTGPTGSGKTTTLYSALSELN  105 (264)
T ss_pred             CCHHHcCCCHHHHHHHHHHHhcC------CCEEEEECCCCCcHHHHHHHHHhhhC
Confidence            45677776777777777776432      12489999999999999999987763

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>KOG0478|consensus

Probab=96.38  E-value=0.0055  Score=70.24  Aligned_cols=52  Identities=19%  Similarity=0.059  Sum_probs=38.2

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCcc----cc---ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMPE----FF---KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~~----~~---k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -.|.|++++|.-|.=.|....+...    .+   -+|||+|.||||||.|.+.+++-+-
T Consensus       429 PsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~p  487 (804)
T KOG0478|consen  429 PSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLP  487 (804)
T ss_pred             hhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCC
Confidence            3678889988877666644432211    12   3699999999999999999998754

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.38  E-value=0.063  Score=50.88  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=20.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+.+.||.|+|||+|++.|+...
T Consensus        30 ~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          30 KIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            47899999999999999999764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.37  E-value=0.16  Score=56.22  Aligned_cols=85  Identities=13%  Similarity=0.078  Sum_probs=46.7

Q ss_pred             hhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcC--CCc-------cccceeEEecCCCCChHHHHH
Q psy16204        195 YSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPT--IMP-------EFFKEALERHSHGTGKTMLAK  265 (577)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl--~~~-------~~~k~ILL~GPpGtGKT~LAk  265 (577)
                      ...|+.+.+++.+-..........   +....+++...|.+.+...+  ...       ....-++|.||+|||||+++.
T Consensus       165 l~~gV~~~la~~Li~~l~~~~~~~---~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGvGKTTtaa  241 (432)
T PRK12724        165 VREGMSQSYVEEMASKLEERLSPV---DQGRNHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTTSIA  241 (432)
T ss_pred             HHCCCCHHHHHHHHHHHHHhhccc---cccchHHHHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCCCHHHHHH
Confidence            457778776665544433222111   11223444555555443211  110       012348899999999999999


Q ss_pred             HHHHHh----CCeEEEEecCc
Q psy16204        266 AVATEC----GTTFFNVSSST  282 (577)
Q Consensus       266 aLA~el----~~~fv~v~~s~  282 (577)
                      .||..+    |..+..+++..
T Consensus       242 KLA~~~~~~~G~~V~Lit~Dt  262 (432)
T PRK12724        242 KLAAKYFLHMGKSVSLYTTDN  262 (432)
T ss_pred             HHHHHHHHhcCCeEEEecccc
Confidence            999754    34455555543

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.37  E-value=0.056  Score=59.38  Aligned_cols=71  Identities=20%  Similarity=0.199  Sum_probs=40.7

Q ss_pred             hhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc---cceeEEecCCCCChHHHHHHHHHHh
Q psy16204        195 YSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF---FKEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~---~k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      ...|+.+.+...+-........   .+  -..+.+++.|.+.+.. +.....   ..-+.|.||+|+|||++++.||..+
T Consensus       142 ~~~~v~~~la~~l~~~~~~~~~---~~--~~~~~~~~~l~~~l~~-~~~~~~~~~g~vi~lvGpnG~GKTTtlakLA~~~  215 (420)
T PRK14721        142 LSAGFSPLLSRHLLEKLPADRD---FE--QSLKKTISLLTLNLRT-IGGDEIIEQGGVYALIGPTGVGKTTTTAKLAARA  215 (420)
T ss_pred             HHCCCCHHHHHHHHHHHHHHhh---hh--hHHHHHHHHHHHHHHh-cCCccccCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3467777776655443322111   11  1244455555555432 111111   2358999999999999999998764

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.36  E-value=0.007  Score=58.78  Aligned_cols=24  Identities=29%  Similarity=0.284  Sum_probs=21.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .+.|.||.|+|||+|++.|+....
T Consensus        35 ~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          35 MVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             EEEEECCCCCCHHHHHHHhcccCC
Confidence            478999999999999999998753

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=96.35  E-value=0.011  Score=61.43  Aligned_cols=63  Identities=27%  Similarity=0.216  Sum_probs=40.2

Q ss_pred             hhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhh
Q psy16204        404 NKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCL  481 (577)
Q Consensus       404 ~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~all  481 (577)
                      .+-.+.+|-.+.|.++|+||--.        +-+...+..+.++|..+..-.       ++.|+.+|..++.+...|-
T Consensus       143 qrl~ia~aL~~~P~lliLDEPt~--------GLDp~~~~~~~~~l~~l~~~g-------~~tvlissH~l~e~~~~~d  205 (293)
T COG1131         143 QRLSIALALLHDPELLILDEPTS--------GLDPESRREIWELLRELAKEG-------GVTILLSTHILEEAEELCD  205 (293)
T ss_pred             HHHHHHHHHhcCCCEEEECCCCc--------CCCHHHHHHHHHHHHHHHhCC-------CcEEEEeCCcHHHHHHhCC
Confidence            34445567889999999999532        233444444555555444322       2578889999988877733

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.33  E-value=0.0031  Score=58.72  Aligned_cols=26  Identities=31%  Similarity=0.355  Sum_probs=20.9

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFF  276 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv  276 (577)
                      |.|.|+||||||+|++.|++. |.+++
T Consensus         2 I~i~G~~stGKTTL~~~L~~~-g~~~v   27 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR-GYPVV   27 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred             EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence            689999999999999999998 87765

>TIGR00416 sms DNA repair protein RadA

Probab=96.33  E-value=0.061  Score=59.48  Aligned_cols=34  Identities=26%  Similarity=0.226  Sum_probs=27.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      .-+|+.|+||+|||+|+..+|..+   +.++++++..
T Consensus        95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E  131 (454)
T TIGR00416        95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE  131 (454)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc
Confidence            347999999999999999998765   3467777764

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.32  E-value=0.0025  Score=62.45  Aligned_cols=30  Identities=23%  Similarity=0.298  Sum_probs=26.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      .|++.|.||||||++++.|+ ++|.+++.++
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~   31 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN   31 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence            47899999999999999999 9998876655

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=96.30  E-value=0.016  Score=59.95  Aligned_cols=51  Identities=24%  Similarity=0.229  Sum_probs=31.1

Q ss_pred             eEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc-c--cc-ccchHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT-S--KY-RGESEKLVRLLFE  300 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~-~--k~-~G~~e~~vr~lF~  300 (577)
                      |+|+|.||+|||++|+.|++.+   +..+..++...+. .  .| ....|+.+|..+.
T Consensus         4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~   61 (270)
T PF08433_consen    4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLK   61 (270)
T ss_dssp             EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHH
Confidence            6899999999999999999875   4667777755443 1  12 2234666665544

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.30  E-value=0.015  Score=62.27  Aligned_cols=21  Identities=24%  Similarity=0.302  Sum_probs=19.1

Q ss_pred             eEEecCCCCChHHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      +.|.||+|||||++.|.||--
T Consensus        32 ~vllGPSGcGKSTlLr~IAGL   52 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGL   52 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999943

>PRK05973 replicative DNA helicase; Provisional

Probab=96.30  E-value=0.04  Score=56.17  Aligned_cols=34  Identities=29%  Similarity=0.280  Sum_probs=27.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      .-+|+.|+||+|||+++-.++.+.   |.+.++++..
T Consensus        65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE  101 (237)
T PRK05973         65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE  101 (237)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence            348999999999999999887654   6677777664

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.29  E-value=0.38  Score=53.25  Aligned_cols=37  Identities=27%  Similarity=0.196  Sum_probs=28.5

Q ss_pred             ccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        246 FFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       246 ~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      .+.-||+.|--|+|||+.|--||..+   +.....|.|..
T Consensus        99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~  138 (451)
T COG0541          99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADT  138 (451)
T ss_pred             CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEeccc
Confidence            34568999999999999988888776   45666666654

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.29  E-value=0.097  Score=59.35  Aligned_cols=24  Identities=21%  Similarity=0.123  Sum_probs=20.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      ..+.|+||+|+|||+++..||..+
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa~l  374 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQRF  374 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            458899999999999999988764

>PRK09354 recA recombinase A; Provisional

Probab=96.29  E-value=0.023  Score=60.99  Aligned_cols=35  Identities=23%  Similarity=0.175  Sum_probs=28.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      .-++++||+|||||+||-.++.++   |...++++...
T Consensus        61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~   98 (349)
T PRK09354         61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH   98 (349)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence            347899999999999999777554   56778888764

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.29  E-value=0.011  Score=55.88  Aligned_cols=23  Identities=22%  Similarity=0.215  Sum_probs=20.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||.|+|||+|++.|+...
T Consensus        30 ~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          30 SLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            47899999999999999999765

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.28  E-value=0.012  Score=55.82  Aligned_cols=23  Identities=22%  Similarity=0.196  Sum_probs=20.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||.|+|||+|+++|+...
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          28 IVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46799999999999999999654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=96.27  E-value=0.02  Score=59.72  Aligned_cols=35  Identities=14%  Similarity=0.147  Sum_probs=28.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~  282 (577)
                      .-++++||||+|||.++-.+|..+         +...++++..+
T Consensus       103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~  146 (317)
T PRK04301        103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG  146 (317)
T ss_pred             cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence            347899999999999999998764         23678888754

>PHA02624 large T antigen; Provisional

Probab=96.24  E-value=0.0066  Score=69.26  Aligned_cols=35  Identities=31%  Similarity=0.392  Sum_probs=31.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      +.+||+||||||||+++.+|++.++...+.|+++.
T Consensus       432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt  466 (647)
T PHA02624        432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP  466 (647)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence            46899999999999999999999987777788664

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=96.24  E-value=0.034  Score=57.55  Aligned_cols=35  Identities=14%  Similarity=0.161  Sum_probs=28.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG---------TTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~  282 (577)
                      .-++++||||+|||+++-.+|..+.         ...++|+..+
T Consensus        96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~  139 (310)
T TIGR02236        96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN  139 (310)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence            3478999999999999999987742         3678887754

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=96.22  E-value=0.011  Score=63.48  Aligned_cols=81  Identities=17%  Similarity=0.091  Sum_probs=56.4

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCcccc-ceeEEecCCCCChHHHHHHHHHHhC-CeEEEEecCccccccccchHHHHHHH
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMPEFF-KEALERHSHGTGKTMLAKAVATECG-TTFFNVSSSTLTSKYRGESEKLVRLL  298 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~-k~ILL~GPpGtGKT~LAkaLA~el~-~~fv~v~~s~l~~k~~G~~e~~vr~l  298 (577)
                      +++.|+++++++|.+++...-.+.+.- +-++|.||+|+|||+|++.|.+-+. .+++.+..|-.-+.-.+..-..+|..
T Consensus        61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~~~r~~  140 (358)
T PF08298_consen   61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPKELRRE  140 (358)
T ss_pred             ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCHhHHHH
Confidence            489999999999999986543333333 4578999999999999999998885 45666655544443333334445555


Q ss_pred             HHH
Q psy16204        299 FEM  301 (577)
Q Consensus       299 F~~  301 (577)
                      |..
T Consensus       141 ~~~  143 (358)
T PF08298_consen  141 FED  143 (358)
T ss_pred             HHH
Confidence            543

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=96.22  E-value=0.055  Score=52.88  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=20.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -++|+||.|+|||+|+++|+-.++
T Consensus        24 ~~~i~G~nGsGKStll~al~~l~~   47 (197)
T cd03278          24 LTAIVGPNGSGKSNIIDAIRWVLG   47 (197)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhc
Confidence            357999999999999999987653

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=96.20  E-value=0.0074  Score=61.56  Aligned_cols=55  Identities=16%  Similarity=0.131  Sum_probs=32.9

Q ss_pred             HHhcCCeEEEEccccccccCCC-CCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEe
Q psy16204        411 ARCYAPSTIFIDEVDSLCSMRG-SDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAA  469 (577)
Q Consensus       411 a~~~~p~IIfIDEID~l~~~r~-~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIat  469 (577)
                      .....-.+|+||-|-.+....- +.++.......+..++..|..+...    .++.||.|
T Consensus       129 l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~----~~iaVvvT  184 (256)
T PF08423_consen  129 LSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARK----YNIAVVVT  184 (256)
T ss_dssp             HHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHH----TT-EEEEE
T ss_pred             ccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHh----CCceEEee
Confidence            3445668999999999876432 2223344456677777667665532    33556555

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=96.20  E-value=0.005  Score=57.38  Aligned_cols=32  Identities=19%  Similarity=0.366  Sum_probs=27.0

Q ss_pred             eEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      ++|.|+||+|||++|+.|+..+   +...+.++..
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d   36 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGD   36 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCH
Confidence            6899999999999999999998   6666666543

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=96.18  E-value=0.015  Score=61.77  Aligned_cols=43  Identities=23%  Similarity=0.276  Sum_probs=31.5

Q ss_pred             ccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        223 VAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       223 IiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ++......+-|..++...       +++|+.|++|+|||+++++|.....
T Consensus       143 ~~~~~~~~~~L~~~v~~~-------~nili~G~tgSGKTTll~aL~~~ip  185 (332)
T PRK13900        143 LLAEKKIKEFLEHAVISK-------KNIIISGGTSTGKTTFTNAALREIP  185 (332)
T ss_pred             hhhhHHHHHHHHHHHHcC-------CcEEEECCCCCCHHHHHHHHHhhCC
Confidence            344444455555555332       6899999999999999999998875

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.17  E-value=0.01  Score=57.27  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=21.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      ..+.|.||.|+|||+|.+.|+...
T Consensus        36 e~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          36 ELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999999765

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot)

Probab=96.17  E-value=0.014  Score=56.66  Aligned_cols=59  Identities=20%  Similarity=0.159  Sum_probs=32.6

Q ss_pred             CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCc
Q psy16204        415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGV  484 (577)
Q Consensus       415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~  484 (577)
                      ..++|+|||+....+.+...+.  .    ....++.+....     ..++-||.+|-.|..|++.+++..
T Consensus        79 ~~~liviDEa~~~~~~r~~~~~--~----~~~~~~~l~~hR-----h~g~diiliTQ~~~~id~~ir~lv  137 (193)
T PF05707_consen   79 KGSLIVIDEAQNFFPSRSWKGK--K----VPEIIEFLAQHR-----HYGWDIILITQSPSQIDKFIRDLV  137 (193)
T ss_dssp             TT-EEEETTGGGTSB---T-T----------HHHHGGGGCC-----CTT-EEEEEES-GGGB-HHHHCCE
T ss_pred             CCcEEEEECChhhcCCCccccc--c----chHHHHHHHHhC-----cCCcEEEEEeCCHHHHhHHHHHHH
Confidence            4589999999999998765211  0    122233333322     134678899999999999887643

Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.

>PTZ00035 Rad51 protein; Provisional

Probab=96.15  E-value=0.039  Score=58.70  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=25.4

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG---------TTFFNVSSST  282 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~  282 (577)
                      +.++|+||+|||+++..++-.+.         ...++++...
T Consensus       121 teI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~  162 (337)
T PTZ00035        121 TELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG  162 (337)
T ss_pred             EEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence            68999999999999999886543         3456666543

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.15  E-value=0.074  Score=58.95  Aligned_cols=35  Identities=20%  Similarity=0.209  Sum_probs=28.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      ..+|+.||||+|||+|+-.++.+.   |-+.++++..+
T Consensus       264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE  301 (484)
T TIGR02655       264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEE  301 (484)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence            458999999999999999888765   55777777654

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=96.14  E-value=0.015  Score=61.32  Aligned_cols=30  Identities=20%  Similarity=0.115  Sum_probs=26.6

Q ss_pred             ccceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        246 FFKEALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       246 ~~k~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      .+-.||+.|++|||||++|..||..++.+.
T Consensus        91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~  120 (301)
T PRK04220         91 EPIIILIGGASGVGTSTIAFELASRLGIRS  120 (301)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            345689999999999999999999998873

>PRK14526 adenylate kinase; Provisional

Probab=96.14  E-value=0.005  Score=61.23  Aligned_cols=34  Identities=24%  Similarity=0.280  Sum_probs=27.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      .++|.||||+|||++++.||+.++.++  +++.+++
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~ll   35 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYH--ISTGDLF   35 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCce--eecChHH
Confidence            378999999999999999999988654  5555553

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.13  E-value=0.062  Score=49.74  Aligned_cols=23  Identities=26%  Similarity=0.268  Sum_probs=20.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .++|.|+.|+|||+|+++|+..+
T Consensus        27 ~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          27 IVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998765

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.11  E-value=0.011  Score=62.59  Aligned_cols=25  Identities=16%  Similarity=0.139  Sum_probs=22.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ..+|+.||+|+|||++++++...+.
T Consensus       123 g~ili~G~tGSGKTT~l~al~~~i~  147 (343)
T TIGR01420       123 GLILVTGPTGSGKSTTLASMIDYIN  147 (343)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhC
Confidence            4589999999999999999998764

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.10  E-value=0.058  Score=56.14  Aligned_cols=53  Identities=19%  Similarity=0.098  Sum_probs=32.2

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCe--EEEEecCccccccccchHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTT--FFNVSSSTLTSKYRGESEKLVRLLFEM  301 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~--fv~v~~s~l~~k~~G~~e~~vr~lF~~  301 (577)
                      .+-|.|.+|||||+++|.|..-..-.  -+.+++.++......+-...+.++.+.
T Consensus        41 ~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~   95 (268)
T COG4608          41 TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEK   95 (268)
T ss_pred             EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHH
Confidence            46799999999999999999765421  244454444332211223445555554

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.09  E-value=0.089  Score=52.30  Aligned_cols=23  Identities=30%  Similarity=0.225  Sum_probs=20.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+++.||+||||++|.|++|.-.
T Consensus        31 ~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhcc
Confidence            48999999999999999999764

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=96.09  E-value=0.028  Score=59.98  Aligned_cols=27  Identities=26%  Similarity=0.234  Sum_probs=23.5

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      +..+.+.|+.|||||++.++|...+..
T Consensus        22 ~~~~fv~G~~GtGKs~l~~~i~~~~~~   48 (364)
T PF05970_consen   22 GLNFFVTGPAGTGKSFLIKAIIDYLRS   48 (364)
T ss_pred             CcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence            357889999999999999999988753

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.07  E-value=0.012  Score=55.56  Aligned_cols=23  Identities=26%  Similarity=0.102  Sum_probs=20.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+.+.||.|+|||+|++.|+..+
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          28 IYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.07  E-value=0.024  Score=58.66  Aligned_cols=35  Identities=17%  Similarity=0.125  Sum_probs=27.6

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCC--eEEEEecCccc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGT--TFFNVSSSTLT  284 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~--~fv~v~~s~l~  284 (577)
                      +.+.||.|||||+|.|+|+.-+..  --+.++..++.
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~   67 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA   67 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchh
Confidence            679999999999999999987752  34666666553

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.04  E-value=0.098  Score=50.60  Aligned_cols=23  Identities=17%  Similarity=0.026  Sum_probs=20.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||.|+|||+|++.|+...
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          28 IFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00767 rho transcription termination factor Rho

Probab=96.03  E-value=0.014  Score=63.93  Aligned_cols=26  Identities=23%  Similarity=0.253  Sum_probs=22.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      -+++.||+|+|||+|++.|++.....
T Consensus       170 ~~~IvG~~g~GKTtL~~~i~~~I~~n  195 (415)
T TIGR00767       170 RGLIVAPPKAGKTVLLQKIAQAITRN  195 (415)
T ss_pred             EEEEECCCCCChhHHHHHHHHhhccc
Confidence            48999999999999999999986543

Members of this family differ in the specificity of RNA binding.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=96.02  E-value=0.033  Score=59.63  Aligned_cols=33  Identities=15%  Similarity=0.133  Sum_probs=25.7

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG---------TTFFNVSSST  282 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~  282 (577)
                      ..|+|+||||||.|+..+|-.+.         ...++++...
T Consensus       129 tEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~  170 (344)
T PLN03187        129 TEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG  170 (344)
T ss_pred             EEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence            68999999999999998875432         4667777643

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.02  E-value=0.014  Score=55.98  Aligned_cols=57  Identities=25%  Similarity=0.321  Sum_probs=40.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcccccccc---ch----HHHHHHHHHHhhhh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLTSKYRG---ES----EKLVRLLFEMVSFL  305 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~~k~~G---~~----e~~vr~lF~~a~~~  305 (577)
                      -|.|.|.+|+|||+||++|.+.+   |.+.+.+++..+...+..   -+    ..+++.+.+.|..+
T Consensus         4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll   70 (156)
T PF01583_consen    4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLL   70 (156)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999887   689999998877654321   11    35556555555444

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>KOG0058|consensus

Probab=96.02  E-value=0.027  Score=65.04  Aligned_cols=23  Identities=17%  Similarity=0.146  Sum_probs=20.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+-|.||.|.|||++|..|-+-.
T Consensus       496 ~vALVGPSGsGKSTiasLL~rfY  518 (716)
T KOG0058|consen  496 VVALVGPSGSGKSTIASLLLRFY  518 (716)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            47999999999999999998765

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=96.02  E-value=0.095  Score=52.80  Aligned_cols=36  Identities=31%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      +.+|++|+||||||.++..++.+.   |-++++|+..+.
T Consensus        24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~   62 (260)
T COG0467          24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES   62 (260)
T ss_pred             cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence            568999999999999999877554   678888887643

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.01  E-value=0.0083  Score=49.13  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=20.5

Q ss_pred             eEEecCCCCChHHHHHHHHHHh
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +.+.|++|+|||++++++++.+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999996

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PLN02674 adenylate kinase

Probab=96.00  E-value=0.0088  Score=61.14  Aligned_cols=35  Identities=14%  Similarity=0.206  Sum_probs=29.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      ..|+|.||||+||+++|+.||+.+++  ..++..+++
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~~~~--~his~Gdll   66 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDEYCL--CHLATGDML   66 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcCC--cEEchhHHH
Confidence            56999999999999999999999885  455666553

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=95.99  E-value=0.032  Score=58.82  Aligned_cols=34  Identities=12%  Similarity=0.076  Sum_probs=26.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~  282 (577)
                      -++++|+||+|||.++..+|-.+         +...++++...
T Consensus        98 iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~  140 (313)
T TIGR02238        98 ITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG  140 (313)
T ss_pred             EEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence            46899999999999999887533         34677777653

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.98  E-value=0.16  Score=49.00  Aligned_cols=23  Identities=35%  Similarity=0.278  Sum_probs=20.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||.|+|||+|++.|+...
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=95.96  E-value=0.11  Score=52.30  Aligned_cols=23  Identities=26%  Similarity=0.291  Sum_probs=20.7

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +.+.||+|.|||++.|.|..+..
T Consensus        31 ~fl~GpSGAGKSTllkLi~~~e~   53 (223)
T COG2884          31 VFLTGPSGAGKSTLLKLIYGEER   53 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHhhhc
Confidence            67899999999999999998764

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3

Probab=95.96  E-value=0.019  Score=52.62  Aligned_cols=52  Identities=23%  Similarity=0.230  Sum_probs=38.5

Q ss_pred             cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        226 LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       226 ~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      |.++.+.+.+.+...    ...+.+||.+|+|+|||.++-.++.++..+++.+-..
T Consensus         8 Q~~ai~~i~~~~~~~----~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~   59 (184)
T PF04851_consen    8 QQEAIARIINSLENK----KEERRVLLNAPTGSGKTIIALALILELARKVLIVAPN   59 (184)
T ss_dssp             HHHHHHHHHHHHHTT----SGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESS
T ss_pred             HHHHHHHHHHHHHhc----CCCCCEEEEECCCCCcChhhhhhhhccccceeEecCH
Confidence            566677777766443    2236899999999999999998777776677776543

1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=95.96  E-value=0.0062  Score=58.32  Aligned_cols=28  Identities=21%  Similarity=0.185  Sum_probs=24.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFF  276 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv  276 (577)
                      .++|.||+|+|||+|++.|+..++..|+
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~   31 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQREQTQLL   31 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence            4789999999999999999998876543

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=95.95  E-value=0.0086  Score=60.76  Aligned_cols=35  Identities=31%  Similarity=0.328  Sum_probs=28.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      -++++||+|||||.+|-++|+..|.|++..+.-.+
T Consensus         3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~   37 (233)
T PF01745_consen    3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC   37 (233)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred             EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence            46899999999999999999999999999887654

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=95.94  E-value=0.11  Score=57.50  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=27.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH----hCCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE----CGTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e----l~~~fv~v~~s  281 (577)
                      ..+|+.|+||||||++|..++.+    .|-+.++|...
T Consensus        22 ~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e   59 (484)
T TIGR02655        22 RSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE   59 (484)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            56899999999999999988543    25788888875

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.94  E-value=0.11  Score=50.20  Aligned_cols=65  Identities=11%  Similarity=0.096  Sum_probs=38.4

Q ss_pred             hhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204        401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC  480 (577)
Q Consensus       401 ~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~al  480 (577)
                      |...+-++.++-...|.++++||-..-        .+...+..+..+|..+....        ..||.+|..++.+...+
T Consensus       139 G~~qrv~la~al~~~p~llllDEP~~~--------LD~~~~~~l~~~l~~~~~~~--------~tvi~~sh~~~~~~~~~  202 (213)
T cd03262         139 GQQQRVAIARALAMNPKVMLFDEPTSA--------LDPELVGEVLDVMKDLAEEG--------MTMVVVTHEMGFAREVA  202 (213)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccC--------CCHHHHHHHHHHHHHHHHcC--------CEEEEEeCCHHHHHHhC
Confidence            334455566677889999999996432        23333444445555443211        24667778777765544


Q ss_pred             h
Q psy16204        481 L  481 (577)
Q Consensus       481 l  481 (577)
                      -
T Consensus       203 d  203 (213)
T cd03262         203 D  203 (213)
T ss_pred             C
Confidence            3

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=95.94  E-value=0.067  Score=61.19  Aligned_cols=24  Identities=33%  Similarity=0.354  Sum_probs=21.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      ..+|+.|++|||||+|.|+||.-.
T Consensus       420 ~~llI~G~SG~GKTsLlRaiaGLW  443 (604)
T COG4178         420 ERLLITGESGAGKTSLLRALAGLW  443 (604)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccC
Confidence            358999999999999999999653

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=95.93  E-value=0.024  Score=55.42  Aligned_cols=23  Identities=17%  Similarity=0.120  Sum_probs=21.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||.|+|||+|++.|+...
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          28 ITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            47899999999999999999876

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.93  E-value=0.15  Score=49.91  Aligned_cols=66  Identities=11%  Similarity=0.001  Sum_probs=40.3

Q ss_pred             hhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204        401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC  480 (577)
Q Consensus       401 ~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~al  480 (577)
                      +...+-++.++-...|.++++||-..-        -+...++.+.++|..+..-.        ..||.+|...+.+...+
T Consensus       141 G~~qrv~laral~~~p~llllDEPt~~--------LD~~~~~~l~~~l~~~~~~~--------~tiii~sH~~~~~~~~~  204 (214)
T PRK13543        141 GQKKRLALARLWLSPAPLWLLDEPYAN--------LDLEGITLVNRMISAHLRGG--------GAALVTTHGAYAAPPVR  204 (214)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccc--------CCHHHHHHHHHHHHHHHhCC--------CEEEEEecChhhhhhhc
Confidence            344555666777889999999997532        23333444555555443211        24667888887777665


Q ss_pred             hc
Q psy16204        481 LE  482 (577)
Q Consensus       481 lr  482 (577)
                      -+
T Consensus       205 ~~  206 (214)
T PRK13543        205 TR  206 (214)
T ss_pred             ce
Confidence            44

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=95.92  E-value=0.1  Score=50.54  Aligned_cols=23  Identities=22%  Similarity=0.114  Sum_probs=20.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+.|.||.|+|||+|++.|+..+
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          28 FVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999765

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.91  E-value=0.06  Score=55.49  Aligned_cols=36  Identities=19%  Similarity=0.134  Sum_probs=25.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC--CeEEEEecCccc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG--TTFFNVSSSTLT  284 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l~  284 (577)
                      .+=+.|++|||||+|+|+||.-..  .--+.+++..+.
T Consensus        35 ~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~   72 (252)
T COG1124          35 TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLA   72 (252)
T ss_pred             EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccC
Confidence            356999999999999999996543  223455554443

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=95.91  E-value=0.008  Score=59.22  Aligned_cols=28  Identities=18%  Similarity=0.158  Sum_probs=25.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      .-+++.|+||+|||++|+.||..++..+
T Consensus         4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~   31 (197)
T PRK12339          4 TIHFIGGIPGVGKTSISGYIARHRAIDI   31 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence            3578999999999999999999988754

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=95.90  E-value=0.016  Score=62.58  Aligned_cols=24  Identities=33%  Similarity=0.564  Sum_probs=21.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .+|+.||+|+|||++++++...+.
T Consensus       151 lilI~G~TGSGKTT~l~al~~~i~  174 (372)
T TIGR02525       151 LGLICGETGSGKSTLAASIYQHCG  174 (372)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999988763

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=95.90  E-value=0.13  Score=55.56  Aligned_cols=23  Identities=22%  Similarity=0.091  Sum_probs=20.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||+|||||+|.|.||.-.
T Consensus        47 ~~~llGpsGsGKSTLLr~IaGl~   69 (377)
T PRK11607         47 IFALLGASGCGKSTLLRMLAGFE   69 (377)
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999999654

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=95.90  E-value=0.12  Score=52.30  Aligned_cols=70  Identities=13%  Similarity=0.051  Sum_probs=40.2

Q ss_pred             hhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhh
Q psy16204        402 RINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCL  481 (577)
Q Consensus       402 ~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~all  481 (577)
                      ...+-++..+-...|.+|++||-..-.        +...+..+..+|..+-.-.       ..-||.+|..++.+...+-
T Consensus       125 q~qrv~laral~~~p~lllLDEPt~~L--------D~~~~~~l~~~L~~~~~~~-------g~tiiivsH~~~~i~~~~d  189 (251)
T PRK09544        125 ETQRVLLARALLNRPQLLVLDEPTQGV--------DVNGQVALYDLIDQLRREL-------DCAVLMVSHDLHLVMAKTD  189 (251)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCcCC--------CHHHHHHHHHHHHHHHHhc-------CCEEEEEecCHHHHHHhCC
Confidence            344445666777899999999975332        2333333444444332111       1357778888887776665


Q ss_pred             cCccc
Q psy16204        482 EGVVI  486 (577)
Q Consensus       482 rr~~i  486 (577)
                      +-+.+
T Consensus       190 ~i~~l  194 (251)
T PRK09544        190 EVLCL  194 (251)
T ss_pred             EEEEE
Confidence            54433

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=95.90  E-value=0.092  Score=50.84  Aligned_cols=64  Identities=14%  Similarity=0.163  Sum_probs=38.1

Q ss_pred             hhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204        401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC  480 (577)
Q Consensus       401 ~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~al  480 (577)
                      |...+-++.++-...|.+|++||-..-.        +...+..+..+|..+....        ..||.+|..++.+...+
T Consensus       141 G~~qrl~la~al~~~p~lllLDEPt~~L--------D~~~~~~l~~~l~~~~~~~--------~tii~~tH~~~~~~~~~  204 (214)
T TIGR02673       141 GEQQRVAIARAIVNSPPLLLADEPTGNL--------DPDLSERILDLLKRLNKRG--------TTVIVATHDLSLVDRVA  204 (214)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHHHcC--------CEEEEEeCCHHHHHHhc
Confidence            3445556666778899999999974332        3333444445554442211        35667777777666544

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PF13245 AAA_19: Part of AAA domain

Probab=95.89  E-value=0.013  Score=49.58  Aligned_cols=31  Identities=29%  Similarity=0.367  Sum_probs=21.3

Q ss_pred             eEEecCCCCChH-HHHHHHHHHh------CCeEEEEec
Q psy16204        250 ALERHSHGTGKT-MLAKAVATEC------GTTFFNVSS  280 (577)
Q Consensus       250 ILL~GPpGtGKT-~LAkaLA~el------~~~fv~v~~  280 (577)
                      +++.|||||||| +++..++..+      +..++.+..
T Consensus        13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~   50 (76)
T PF13245_consen   13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP   50 (76)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence            556999999999 5666666665      344555544

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.88  E-value=0.14  Score=49.69  Aligned_cols=23  Identities=17%  Similarity=0.137  Sum_probs=20.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||.|+|||+|++.|+...
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999764

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=95.88  E-value=0.12  Score=55.72  Aligned_cols=23  Identities=22%  Similarity=0.072  Sum_probs=20.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||+|||||+|.+.||...
T Consensus        42 ~~~LlGpsGsGKSTLLr~IaGl~   64 (375)
T PRK09452         42 FLTLLGPSGCGKTTVLRLIAGFE   64 (375)
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999999754

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.86  E-value=0.17  Score=49.44  Aligned_cols=23  Identities=22%  Similarity=0.134  Sum_probs=20.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+.|.||.|+|||+|++.|+...
T Consensus        32 ~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          32 FVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.85  E-value=0.063  Score=55.48  Aligned_cols=44  Identities=23%  Similarity=0.299  Sum_probs=30.5

Q ss_pred             hhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhC
Q psy16204        402 RINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG  453 (577)
Q Consensus       402 ~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~  453 (577)
                      =.++.++.+|-...|.+||+||=..        +.+.....++.+|+..+..
T Consensus       150 M~KRvaLARAialdPell~~DEPts--------GLDPI~a~~~~~LI~~L~~  193 (263)
T COG1127         150 MRKRVALARAIALDPELLFLDEPTS--------GLDPISAGVIDELIRELND  193 (263)
T ss_pred             HHHHHHHHHHHhcCCCEEEecCCCC--------CCCcchHHHHHHHHHHHHH
Confidence            3567788889999999999999532        2233444667777766653

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=95.85  E-value=0.023  Score=53.64  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=21.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .+.+.||.|+|||+|.+.|+....
T Consensus        30 ~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          30 KVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            478999999999999999998753

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=95.84  E-value=0.007  Score=56.97  Aligned_cols=25  Identities=16%  Similarity=0.098  Sum_probs=22.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      -+++.||+|+|||+++++|+..++.
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~~   27 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLAG   27 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCc
Confidence            3689999999999999999998753

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.83  E-value=0.017  Score=55.59  Aligned_cols=22  Identities=27%  Similarity=0.252  Sum_probs=19.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -+.|.||.|+|||+|++.|+..
T Consensus        35 ~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          35 LTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999953

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12608 transcription termination factor Rho; Provisional

Probab=95.83  E-value=0.011  Score=63.95  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=22.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      ..+|+.||||||||+|++.+++.+..
T Consensus       134 QR~LIvG~pGtGKTTLl~~la~~i~~  159 (380)
T PRK12608        134 QRGLIVAPPRAGKTVLLQQIAAAVAA  159 (380)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999998743

>PRK13975 thymidylate kinase; Provisional

Probab=95.82  E-value=0.01  Score=56.44  Aligned_cols=28  Identities=25%  Similarity=0.209  Sum_probs=24.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFF  276 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv  276 (577)
                      -|.|.|++|+|||++++.||+.++..+.
T Consensus         4 ~I~ieG~~GsGKtT~~~~L~~~l~~~~~   31 (196)
T PRK13975          4 FIVFEGIDGSGKTTQAKLLAEKLNAFWT   31 (196)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence            4789999999999999999999986443

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.82  E-value=0.2  Score=49.38  Aligned_cols=23  Identities=22%  Similarity=0.121  Sum_probs=20.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||.|+|||+|++.|+..+
T Consensus        37 ~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         37 MMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999764

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=95.81  E-value=0.096  Score=51.72  Aligned_cols=23  Identities=22%  Similarity=0.172  Sum_probs=20.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+.|.||.|+|||+|++.|+...
T Consensus        50 ~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          50 RIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999754

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=95.81  E-value=0.12  Score=51.06  Aligned_cols=21  Identities=19%  Similarity=0.162  Sum_probs=19.0

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -++|.||.|+|||++.+.++.
T Consensus        31 ~~~l~G~n~~GKstll~~i~~   51 (204)
T cd03282          31 FHIITGPNMSGKSTYLKQIAL   51 (204)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999873

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00889 adenylylsulfate kinase; Provisional

Probab=95.79  E-value=0.012  Score=55.43  Aligned_cols=35  Identities=23%  Similarity=0.244  Sum_probs=27.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      .-+.|.|+||+|||++|+.|+..+   +..+..++...
T Consensus         5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~   42 (175)
T PRK00889          5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA   42 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence            357899999999999999999987   34566666543

>PRK05541 adenylylsulfate kinase; Provisional

Probab=95.78  E-value=0.009  Score=56.31  Aligned_cols=25  Identities=28%  Similarity=0.205  Sum_probs=23.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .-|+|.|++|+|||++|+.|+..+.
T Consensus         8 ~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          8 YVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999986

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.77  E-value=0.03  Score=54.37  Aligned_cols=65  Identities=12%  Similarity=0.052  Sum_probs=38.0

Q ss_pred             hhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhh
Q psy16204        402 RINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCL  481 (577)
Q Consensus       402 ~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~all  481 (577)
                      ...+-++.++-...|.+|++||--.-.        +...+..+..+|..+.. .       ...||.+|..++.+...+-
T Consensus       137 ~~qrv~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~-~-------~~tiii~sH~~~~~~~~~d  200 (222)
T cd03224         137 EQQMLAIARALMSRPKLLLLDEPSEGL--------APKIVEEIFEAIRELRD-E-------GVTILLVEQNARFALEIAD  200 (222)
T ss_pred             HHHHHHHHHHHhcCCCEEEECCCcccC--------CHHHHHHHHHHHHHHHH-C-------CCEEEEEeCCHHHHHHhcc
Confidence            344555666777899999999974322        33333444444444432 1       1357777777776665444


Q ss_pred             c
Q psy16204        482 E  482 (577)
Q Consensus       482 r  482 (577)
                      +
T Consensus       201 ~  201 (222)
T cd03224         201 R  201 (222)
T ss_pred             E
Confidence            3

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=95.77  E-value=0.019  Score=53.83  Aligned_cols=27  Identities=26%  Similarity=0.356  Sum_probs=24.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .-++|.|+.|+|||+++|.+++.++..
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            358899999999999999999999864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=95.76  E-value=0.15  Score=54.59  Aligned_cols=23  Identities=26%  Similarity=0.170  Sum_probs=20.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||+|+|||+|.+.||...
T Consensus        32 ~~~llG~sGsGKSTLLr~iaGl~   54 (356)
T PRK11650         32 FIVLVGPSGCGKSTLLRMVAGLE   54 (356)
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            36799999999999999999764

>PRK05480 uridine/cytidine kinase; Provisional

Probab=95.75  E-value=0.013  Score=56.82  Aligned_cols=36  Identities=19%  Similarity=0.218  Sum_probs=28.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC-CeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG-TTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~-~~fv~v~~s~l  283 (577)
                      .-|.|.|++|||||+|+++|++.++ ..+..++..++
T Consensus         7 ~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~   43 (209)
T PRK05480          7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY   43 (209)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence            4588999999999999999999984 34555555544

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=95.75  E-value=0.035  Score=58.93  Aligned_cols=34  Identities=29%  Similarity=0.378  Sum_probs=27.3

Q ss_pred             HHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204        231 AILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       231 ~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +.|..++...       +++|+.|++|+|||+++++|...+
T Consensus       135 ~~L~~~v~~~-------~nilI~G~tGSGKTTll~aL~~~i  168 (323)
T PRK13833        135 SVIRSAIDSR-------LNIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             HHHHHHHHcC-------CeEEEECCCCCCHHHHHHHHHHHH
Confidence            4455555432       589999999999999999999876

>PRK14529 adenylate kinase; Provisional

Probab=95.74  E-value=0.0077  Score=60.72  Aligned_cols=35  Identities=17%  Similarity=0.210  Sum_probs=28.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      .|+|.||||+|||++++.||+.++.+.  ++..+++.
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~--is~gdllr   36 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAH--IESGAIFR   36 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCC--cccchhhh
Confidence            478999999999999999999998765  44455543

>PLN02199 shikimate kinase

Probab=95.73  E-value=0.0093  Score=62.87  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=29.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      ++|+|.|.+|+|||++++.||+.+|++|+..+
T Consensus       103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD  134 (303)
T PLN02199        103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD  134 (303)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence            48999999999999999999999999987655

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=95.73  E-value=0.036  Score=57.77  Aligned_cols=25  Identities=28%  Similarity=0.396  Sum_probs=22.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .++++.||+|+|||+++++++..+.
T Consensus       145 ~~ili~G~tGsGKTTll~al~~~~~  169 (308)
T TIGR02788       145 KNIIISGGTGSGKTTFLKSLVDEIP  169 (308)
T ss_pred             CEEEEECCCCCCHHHHHHHHHccCC
Confidence            5899999999999999999997753

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.72  E-value=0.071  Score=49.35  Aligned_cols=23  Identities=30%  Similarity=0.280  Sum_probs=20.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+.+.||.|+|||+|+++|+...
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999998764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.72  E-value=0.033  Score=54.71  Aligned_cols=23  Identities=17%  Similarity=0.059  Sum_probs=20.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+.|.||.|+|||+|++.|+..+
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          33 IFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999765

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=95.72  E-value=0.035  Score=54.02  Aligned_cols=65  Identities=29%  Similarity=0.263  Sum_probs=39.2

Q ss_pred             hhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204        401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC  480 (577)
Q Consensus       401 ~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~al  480 (577)
                      |...+-++.++-...|.+|++||-..-.        +......+..+|..+..        . ..||.+|..++.+...+
T Consensus       137 G~~qrv~la~al~~~p~llllDEP~~~L--------D~~~~~~l~~~l~~~~~--------~-~tii~~sH~~~~~~~~~  199 (220)
T cd03263         137 GMKRKLSLAIALIGGPSVLLLDEPTSGL--------DPASRRAIWDLILEVRK--------G-RSIILTTHSMDEAEALC  199 (220)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECCCCCCC--------CHHHHHHHHHHHHHHhc--------C-CEEEEEcCCHHHHHHhc
Confidence            3445556667778899999999975433        22233333344443322        1 36788888888776654


Q ss_pred             hc
Q psy16204        481 LE  482 (577)
Q Consensus       481 lr  482 (577)
                      -+
T Consensus       200 d~  201 (220)
T cd03263         200 DR  201 (220)
T ss_pred             CE
Confidence            43

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=95.71  E-value=0.022  Score=61.78  Aligned_cols=37  Identities=19%  Similarity=0.082  Sum_probs=31.2

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      .++++||.+||||++++.+.+...-.+++++.++...
T Consensus        39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~   75 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRL   75 (398)
T ss_pred             EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhc
Confidence            7899999999999999999988766577777777643

>PRK04132 replication factor C small subunit; Provisional

Probab=95.70  E-value=0.0063  Score=71.77  Aligned_cols=52  Identities=17%  Similarity=0.178  Sum_probs=43.7

Q ss_pred             HHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHH
Q psy16204        207 LEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTML  263 (577)
Q Consensus       207 ~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~L  263 (577)
                      ++++|..++.+..|+||+|++.+++.|+.++...     ...++||+||||+||+..
T Consensus         5 ~~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~-----~i~h~l~~g~~g~~~cl~   56 (846)
T PRK04132          5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKCLT   56 (846)
T ss_pred             hcccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcC-----CCCeEEEECCCCCCcccc
Confidence            4568889999999999999999999999999652     234588999999999643

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.69  E-value=0.12  Score=52.00  Aligned_cols=65  Identities=20%  Similarity=0.269  Sum_probs=38.7

Q ss_pred             hhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204        401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC  480 (577)
Q Consensus       401 ~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~al  480 (577)
                      |...+-++.++-...|.|+++||-..-.        +...+..+..+|..+.. .        ..||.+|++++.+...+
T Consensus       159 Gq~qrv~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~-~--------~tiiivtH~~~~~~~~~  221 (259)
T PRK14274        159 GQQQRLCIARALATNPDVLLMDEPTSAL--------DPVSTRKIEELILKLKE-K--------YTIVIVTHNMQQAARVS  221 (259)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCcccC--------CHHHHHHHHHHHHHHhc-C--------CEEEEEEcCHHHHHHhC
Confidence            3344555666778899999999975433        22333334444444421 1        35777788877766654


Q ss_pred             hc
Q psy16204        481 LE  482 (577)
Q Consensus       481 lr  482 (577)
                      -+
T Consensus       222 d~  223 (259)
T PRK14274        222 DQ  223 (259)
T ss_pred             CE
Confidence            44

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=95.69  E-value=0.2  Score=49.56  Aligned_cols=67  Identities=13%  Similarity=0.098  Sum_probs=41.2

Q ss_pred             hhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204        401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC  480 (577)
Q Consensus       401 ~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~al  480 (577)
                      |...+-++.++-...|.+|++||-..-.        +...+..+.++|..+.. .        ..||.+|..++.+...+
T Consensus       147 Ge~qrv~laral~~~p~~lllDEPt~~L--------D~~~~~~l~~~l~~~~~-~--------~tii~~sH~~~~~~~~~  209 (242)
T TIGR03411       147 GQKQWLEIGMLLMQDPKLLLLDEPVAGM--------TDEETEKTAELLKSLAG-K--------HSVVVVEHDMEFVRSIA  209 (242)
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCccCC--------CHHHHHHHHHHHHHHhc-C--------CEEEEEECCHHHHHHhC
Confidence            3445556677888899999999975332        33334444555554432 1        36778888888766655


Q ss_pred             hcCc
Q psy16204        481 LEGV  484 (577)
Q Consensus       481 lrr~  484 (577)
                      -+..
T Consensus       210 d~i~  213 (242)
T TIGR03411       210 DKVT  213 (242)
T ss_pred             CEEE
Confidence            4433

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=95.69  E-value=0.042  Score=58.76  Aligned_cols=34  Identities=18%  Similarity=0.214  Sum_probs=26.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG---------TTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~  282 (577)
                      -++++|+||+|||.++..+|..+.         ...++++...
T Consensus       125 i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~  167 (342)
T PLN03186        125 ITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG  167 (342)
T ss_pred             EEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence            368999999999999998885432         2577777754

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.68  E-value=0.018  Score=54.79  Aligned_cols=24  Identities=25%  Similarity=0.026  Sum_probs=21.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .+.|.||.|+|||+|++.|+....
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          28 IVGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999997753

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=95.68  E-value=0.11  Score=48.84  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=21.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +-.++.||.|+|||.+.++++-.+.
T Consensus        22 ~~~~i~G~NgsGKS~~l~~i~~~~~   46 (162)
T cd03227          22 SLTIITGPNGSGKSTILDAIGLALG   46 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3678999999999999999886654

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=95.67  E-value=0.18  Score=53.84  Aligned_cols=23  Identities=26%  Similarity=0.138  Sum_probs=20.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||+|||||+|.+.||...
T Consensus        34 ~~~llGpsGsGKSTLLr~IaGl~   56 (351)
T PRK11432         34 MVTLLGPSGCGKTTVLRLVAGLE   56 (351)
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            47899999999999999999765

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=95.67  E-value=0.14  Score=50.98  Aligned_cols=23  Identities=22%  Similarity=0.049  Sum_probs=20.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+.|.|+.|+|||+|++.|+...
T Consensus        49 ~~~i~G~NGsGKSTLl~~i~Gl~   71 (236)
T cd03267          49 IVGFIGPNGAGKTTTLKILSGLL   71 (236)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            47899999999999999999754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=95.66  E-value=0.01  Score=62.53  Aligned_cols=34  Identities=24%  Similarity=0.207  Sum_probs=29.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      +-+++.||+|||||+||..||++++..++..++-
T Consensus         5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             eEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            4578999999999999999999999887766653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	577
2qp9_X	355	Crystal Structure Of S.Cerevisiae Vps4 Length = 355		1e-20
3eih_A	340	Crystal Structure Of S.Cerevisiae Vps4 In The Prese		1e-20
3d8b_A	357	Crystal Structure Of Human Fidgetin-Like Protein 1		1e-20
3eie_A	322	Crystal Structure Of S.Cerevisiae Vps4 In The So4-B		1e-20
3vfd_A	389	Human Spastin Aaa Domain Length = 389		2e-20
2rko_A	331	Crystal Structure Of The Vps4p-Dimer Length = 331		5e-20
3b9p_A	297	Spastin Length = 297		8e-20
3b9p_A	297	Spastin Length = 297		2e-19
2zam_A	444	Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt		3e-18
2zam_A	444	Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt		4e-15
1xwi_A	322	Crystal Structure Of Vps4b Length = 322		4e-17
1xwi_A	322	Crystal Structure Of Vps4b Length = 322		2e-16
2x8a_A	274	Human Nuclear Valosin Containing Protein Like (Nvl)		9e-12
3h4m_A	285	Aaa Atpase Domain Of The Proteasome- Activating Nuc		2e-10
3h4m_A	285	Aaa Atpase Domain Of The Proteasome- Activating Nuc		4e-05
4b4t_H	467	Near-Atomic Resolution Structural Model Of The Yeas		3e-10
4b4t_L	437	Near-Atomic Resolution Structural Model Of The Yeas		7e-10
1r7r_A	816	The Crystal Structure Of Murine P97VCP AT 3.6A Leng		2e-09
1r7r_A	816	The Crystal Structure Of Murine P97VCP AT 3.6A Leng		2e-09
3cf1_A	806	Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len		2e-09
3cf1_A	806	Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len		2e-09
3hu1_A	489	Structure Of P97 N-D1 R95g Mutant In Complex With A		2e-09
3hu3_A	489	Structure Of P97 N-D1 R155h Mutant In Complex With		2e-09
3hu2_A	489	Structure Of P97 N-D1 R86a Mutant In Complex With A		2e-09
3cf0_A	301	Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH		2e-09
3cf0_A	301	Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH		2e-07
2r62_A	268	Crystal Structure Of Helicobacter Pylori Atp Depend		2e-09
1e32_A	458	Structure Of The N-Terminal Domain And The D1 Aaa D		3e-09
2ce7_A	476	Edta Treated Length = 476		3e-09
4b4t_J	405	Near-Atomic Resolution Structural Model Of The Yeas		3e-09
4b4t_J	405	Near-Atomic Resolution Structural Model Of The Yeas		3e-08
3kds_E	465	Apo-ftsh Crystal Structure Length = 465		3e-09
4b4t_K	428	Near-Atomic Resolution Structural Model Of The Yeas		2e-08
4b4t_K	428	Near-Atomic Resolution Structural Model Of The Yeas		1e-05
4b4t_I	437	Near-Atomic Resolution Structural Model Of The Yeas		2e-08
1lv7_A	257	Crystal Structure Of The Aaa Domain Of Ftsh Length		2e-08
4b4t_M	434	Near-Atomic Resolution Structural Model Of The Yeas		2e-07
4b4t_M	434	Near-Atomic Resolution Structural Model Of The Yeas		7e-06
2qz4_A	262	Human Paraplegin, Aaa Domain In Complex With Adp Le		3e-05
1iy2_A	278	Crystal Structure Of The Ftsh Atpase Domain From Th		5e-05
4eiw_A	508	Whole Cytosolic Region Of Atp-Dependent Metalloprot		6e-05
2dhr_A	499	Whole Cytosolic Region Of Atp-Dependent Metalloprot		6e-05
1ixz_A	254	Crystal Structure Of The Ftsh Atpase Domain From Th		8e-05

>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 105/232 (45%), Gaps = 56/232 (24%)
Query: 398 GHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS 457
           G S ++ K     AR   PS IFID+VD+L   RG + E EASRR K ELL+QM+G+ + 
Sbjct: 126 GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGN- 183
Query: 458 LYEDKIIMILAATNHPYQLLT----------------LCLEGVVIDVNL----------D 491
             + + +++L ATN P+QL +                L     + ++N+          D
Sbjct: 184 --DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKED 241
Query: 492 FHKISKMLEGYTGSDIANLARDAAMMSIR------------------RKIMGQTPAQIKE 533
           +  +  M EGY+GSDIA + +DA M  IR                  RK+   +P     
Sbjct: 242 YRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGA 301
Query: 534 IKQEDIDLPVTE--------KDFREAIARCRKSVTAHDLSKYDSWMNEFGSH 577
           I+    D+   E        KDF +AI   R +V   DL K + +  +FG  
Sbjct: 302 IEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 353

>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 161/388 (41%), Gaps = 88/388 (22%)
Query: 207 LEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH-------GTG 259
           L   IL   PNV+W  VAGL  AK  L+EA++LP   P  FK   +  S        GTG
Sbjct: 22  LSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTG 81
Query: 260 KTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGV 319
           K+ LAKAVATE  +TFF+VSSS L SK+ GESEKLV+ LF M         NK       
Sbjct: 82  KSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA------RENK------- 128
Query: 320 LNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESG--PSIFSVMVDGLGKGPWSM 377
               P+  F     I Q++      ALT      E++ S    +   V ++G+G     +
Sbjct: 129 ----PSIIF-----IDQVD------ALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 173
Query: 378 VAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAP-------STIF-IDEVDSLCS 429
           + + AT+  W      +              F+ R Y P       +T+F I+  D+ C 
Sbjct: 174 LVLGATNIPWQLDSAIRRR------------FERRIYIPLPDLAARTTMFEINVGDTPCV 221
Query: 430 MRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVN 489
           +   D            L    +G + S   D  +++  A   P + +         DV+
Sbjct: 222 LTKEDYRT---------LGAMTEGYSGS---DIAVVVKDALMQPIRKIQSATH--FKDVS 267
Query: 490 LDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFR 549
            +  +  K+     G D A               M  T  +  E+K+ D+    T KDF 
Sbjct: 268 TEDDETRKLTPCSPGDDGAIE-------------MSWTDIEADELKEPDL----TIKDFL 310
Query: 550 EAIARCRKSVTAHDLSKYDSWMNEFGSH 577
           +AI   R +V   DL K + +  +FG  
Sbjct: 311 KAIKSTRPTVNEDDLLKQEQFTRDFGQE 338

>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 104/224 (46%), Gaps = 42/224 (18%)
Query: 382 ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASR 441
           AT F+           G   ++ +     ARC  P+ IFIDE+DSL S RG D EHE+SR
Sbjct: 143 ATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRG-DGEHESSR 201
Query: 442 RFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVV---------------I 486
           R K E L+Q+DG  +S  ED+ I+++ ATN P ++       +V               I
Sbjct: 202 RIKTEFLVQLDGATTS-SEDR-ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQI 259
Query: 487 DVNL-----------DFHKISKMLEGYTGSDIANLARDAAMMSIRR----KIMGQTPAQI 531
            +NL           +  +I +  + ++G+D+  L R+A++  IR      I   TP Q+
Sbjct: 260 VINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQV 319
Query: 532 KEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 575
           +         P+   DF  A    R SV+  DL  Y++W   FG
Sbjct: 320 R---------PIAYIDFENAFRTVRPSVSPKDLELYENWNKTFG 354

>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 160/384 (41%), Gaps = 88/384 (22%)
Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH-------GTGKTML 263
           IL   PNV+W  VAGL  AK  L+EA++LP   P  FK   +  S        GTGK+ L
Sbjct: 8   ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67
Query: 264 AKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGE 323
           AKAVATE  +TFF+VSSS L SK+ GESEKLV+ LF M         NK           
Sbjct: 68  AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA------RENK----------- 110
Query: 324 PTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESG--PSIFSVMVDGLGKGPWSMVAVV 381
           P+  F     I Q++      ALT      E++ S    +   V ++G+G     ++ + 
Sbjct: 111 PSIIF-----IDQVD------ALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLG 159
Query: 382 ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAP-------STIF-IDEVDSLCSMRGS 433
           AT+  W      +              F+ R Y P       +T+F I+  D+ C +   
Sbjct: 160 ATNIPWQLDSAIRRR------------FERRIYIPLPDLAARTTMFEINVGDTPCVLTKE 207
Query: 434 DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFH 493
           D            L    +G + S   D  +++  A   P + +         DV+ +  
Sbjct: 208 DYRT---------LGAMTEGYSGS---DIAVVVKDALMQPIRKIQSATH--FKDVSTEDD 253
Query: 494 KISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIA 553
           +  K+     G D A               M  T  +  E+K+ D+    T KDF +AI 
Sbjct: 254 ETRKLTPCSPGDDGAIE-------------MSWTDIEADELKEPDL----TIKDFLKAIK 296
Query: 554 RCRKSVTAHDLSKYDSWMNEFGSH 577
             R +V   DL K + +  +FG  
Sbjct: 297 STRPTVNEDDLLKQEQFTRDFGQE 320

>pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 36/221 (16%)
Query: 382 ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSL-CSMRGSDSEHEAS 440
           AT F          + G   ++ +     AR   PS IFID+VDSL C  R  + EH+AS
Sbjct: 174 ATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERR--EGEHDAS 231
Query: 441 RRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL---------- 490
           RR K E LI+ DG+ S+   D  ++++ ATN P +L    L   +  V +          
Sbjct: 232 RRLKTEFLIEFDGVQSA--GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLL 289
Query: 491 ----------------DFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 534
                           +  ++++M +GY+GSD+  LA+DAA+  IR       P Q+K +
Sbjct: 290 LLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE----LKPEQVKNM 345
Query: 535 KQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 575
              ++   +   DF E++ + ++SV+   L  Y  W  +FG
Sbjct: 346 SASEMR-NIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFG 385

>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 154/381 (40%), Gaps = 84/381 (22%)
Query: 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH-------GTGKTMLA 264
           L   PNV+W  VAGL  AK  L+EA++LP   P  FK   +  S        GTGK+ LA
Sbjct: 18  LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 77
Query: 265 KAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEP 324
           KAVATE  +TFF+VSSS L SK+ GESEKLV+ LF M         NK           P
Sbjct: 78  KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA------RENK-----------P 120
Query: 325 TTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATH 384
           +  F      L   R    G   +  +R    E       V ++G+G     ++ + AT+
Sbjct: 121 SIIFIDEVDALTGTR----GEGESEASRRIKTE-----LLVQMNGVGNDSQGVLVLGATN 171
Query: 385 FTWGKKGTCQSHEGHSGRINKNSLFQARCYAP-------STIF-IDEVDSLCSMRGSDSE 436
             W      +              F+ R Y P       +T+F I+  D+ C +   D  
Sbjct: 172 IPWQLDSAIRRR------------FERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYR 219
Query: 437 HEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDFHKIS 496
                     L    +G + S   D  +++  A   P + +         DV+ +  +  
Sbjct: 220 T---------LGAMTEGYSGS---DIAVVVKDALMQPIRKIQSATH--FKDVSTEDDETR 265
Query: 497 KMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 556
           K+     G D A               M  T  +  E+K+ D+    T KDF +AI   R
Sbjct: 266 KLTPCSPGDDGAIE-------------MSWTDIEADELKEPDL----TIKDFLKAIKSTR 308
Query: 557 KSVTAHDLSKYDSWMNEFGSH 577
            +V   DL K + +  +FG  
Sbjct: 309 PTVNEDDLLKQEQFTRDFGQE 329

>pdb|3B9P|A Chain A, Spastin Length = 297

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 7/104 (6%)
Query: 203 LIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHS 255
           L++ +  +I++    V+W  +AG   AK  LQE ++LP++ PE F       K  L    
Sbjct: 3   LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGP 62
Query: 256 HGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLF 299
            G GKT+LA+AVATEC  TF N+S+++LTSKY G+ EKLVR LF
Sbjct: 63  PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALF 106

>pdb|3B9P|A Chain A, Spastin Length = 297

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 39/223 (17%)
Query: 382 ATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASR 441
           AT            + G   ++ +     AR   PS IFIDEVDSL S R S SEHEASR
Sbjct: 80  ATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-SEHEASR 138
Query: 442 RFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCL-------------------- 481
           R K E L++ DGL  +   D+I+ +LAATN P +L    L                    
Sbjct: 139 RLKTEFLVEFDGLPGNPDGDRIV-VLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELL 197
Query: 482 -------EGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 534
                  +G  +D      +++K+ +GY+GSD+  LA+DAA+  IR          ++++
Sbjct: 198 LNRLLQKQGSPLDTEA-LRRLAKITDGYSGSDLTALAKDAALEPIRE-------LNVEQV 249
Query: 535 KQEDIDL--PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 575
           K  DI     +TE+DF  ++ R R+SV    L+ Y+ W  ++G
Sbjct: 250 KCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYG 292

>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 76/136 (55%), Gaps = 16/136 (11%)
Query: 174 VSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAIL 233
           V  + N+ DG    D  EK          L   L+  I+   PNV+W+ VAGL  AK  L
Sbjct: 95  VDEKGNDSDGEAESDDPEK--------KKLQNQLQGAIVIERPNVKWSDVAGLEGAKEAL 146
Query: 234 QEAMVLPTIMPEFF-------KEALERHSHGTGKTMLAKAVATEC-GTTFFNVSSSTLTS 285
           +EA++LP   P  F       +  L     GTGK+ LAKAVATE   +TFF++SSS L S
Sbjct: 147 KEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206
Query: 286 KYRGESEKLVRLLFEM 301
           K+ GESEKLV+ LF++
Sbjct: 207 KWLGESEKLVKNLFQL 222

>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 32/151 (21%)
Query: 398 GHSGRINKNSLFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNS 456
           G S ++ KN LFQ AR   PS IFIDE+DSLC  R S++E EA+RR K E L+QM G+  
Sbjct: 210 GESEKLVKN-LFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVG- 266
Query: 457 SLYEDKIIMILAATNHPYQLLTLC----------------LEGVVIDVNL---------- 490
              ++  I++L ATN P+ L +                      +  ++L          
Sbjct: 267 --VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEA 324
Query: 491 DFHKISKMLEGYTGSDIANLARDAAMMSIRR 521
           DF ++ +  +GY+G+DI+ + RDA M  +R+
Sbjct: 325 DFQELGRKTDGYSGADISIIVRDALMQPVRK 355

>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 64/99 (64%), Gaps = 8/99 (8%)
Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSHGTGKTML 263
           I+   PNV+W+ VAGL  AK  L+EA++LP   P  F       +  L     GTGK+ L
Sbjct: 2   IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61
Query: 264 AKAVATECG-TTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           AKAVATE   +TFF++SSS L SK+ GESEKLV+ LF++
Sbjct: 62  AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQL 100

>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 108/237 (45%), Gaps = 64/237 (27%)
Query: 398 GHSGRINKNSLFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNS 456
           G S ++ KN LFQ AR   PS IFIDE+DSLC  R S++E EA+RR K E L+QM G+  
Sbjct: 88  GESEKLVKN-LFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVG- 144
Query: 457 SLYEDKIIMILAATNHPYQLLTLC----------------LEGVVIDVNL---------- 490
              ++  I++L ATN P+ L +                      +  ++L          
Sbjct: 145 --VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEA 202
Query: 491 DFHKISKMLEGYTGSDIANLARDAAMMSIR--------RKIMGQ---------------- 526
           DF ++ +  +GY+G+DI+ + RDA M  +R        +K+ G                 
Sbjct: 203 DFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPC 262
Query: 527 TPAQIKEIKQEDIDLP--------VTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 575
           +P     I+   +D+P        V+  D   +++  + +V  HDL K   +  +FG
Sbjct: 263 SPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFG 319

>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 43/200 (21%)
Query: 396 HEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN 455
           + G S R  +    +A+  AP  IF DEVD+LC  R SD E  AS R   +LL +MDGL 
Sbjct: 84  YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR-SDRETGASVRVVNQLLTEMDGLE 142
Query: 456 SSLYEDKIIMILAATNHP----------------------------YQLLTLCLEG---- 483
           +     + + I+AATN P                              L T+   G    
Sbjct: 143 AR----QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPP 198
Query: 484 VVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPV 543
           +  DVNL+        + YTG+D++ L R+A++ ++R+++  Q          E  +L V
Sbjct: 199 LDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSG------NEKGELKV 252
Query: 544 TEKDFREAIARCRKSVTAHD 563
           + K F EA  + R S++  D
Sbjct: 253 SHKHFEEAFKKVRSSISKKD 272

>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTML 263
           +   PNV++  + GL +    ++E + LP   PE F        K  L     GTGKT+L
Sbjct: 8   VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67
Query: 264 AKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           AKAVATE   TF  V  S L  K+ GE   LV+ +F++
Sbjct: 68  AKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKL 105

>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 39/155 (25%)
Query: 398 GHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMR-----GSDSEHEASRRFKAELLIQMD 452
           G    + K+    A+  APS IFIDE+D++ + R     G D E    +R   +LL +MD
Sbjct: 93  GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDRE---VQRTLMQLLAEMD 149
Query: 453 GLNSSLYEDKIIMILAATNHP---------------------------YQLLTLCLEGVV 485
           G ++       + I+ ATN P                            ++L +    + 
Sbjct: 150 GFDAR----GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN 205
Query: 486 IDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIR 520
           +  +++  +I+KM EG  G+++  +  +A M +IR
Sbjct: 206 LAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIR 240

>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTML 263
           ++  P+V ++ V G  +    L+E + LP + PE F        K  L     GTGKT+ 
Sbjct: 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259
Query: 264 AKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           A+AVA     TF  V  S L  KY GE  ++VR LFEM
Sbjct: 260 ARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEM 297

>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 36/176 (20%)
Query: 376 SMVAVVATHFTWG-KKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMR--- 431
           ++ A +  +F +    G    + G S RI +     A+ + P  IF+DEVD++   R   
Sbjct: 234 AVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSE 293
Query: 432 GSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNL- 490
           G+ ++ E  R    ELL QMDG + +L + KIIM   ATN P  L    L    +D  + 
Sbjct: 294 GTSADREIQRTL-MELLTQMDGFD-NLGQTKIIM---ATNRPDTLDPALLRPGRLDRKVE 348
Query: 491 --------------------------DFHKISKMLEGYTGSDIANLARDAAMMSIR 520
                                     DF    KM +G+ G+DI N A +A   +IR
Sbjct: 349 IPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404

>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAV 267
           P V W  + GL + K  LQE +  P   P+ F        K  L     G GKT+LAKA+
Sbjct: 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 531
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
           A EC   F ++    L + + GESE  VR +F+
Sbjct: 532 ANECQANFISIKGPELLTMWFGESEANVREIFD 564

>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 44/187 (23%)
Query: 405 KNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKII 464
           + +  +A   AP+ IFIDE+D++   R   +  E  RR  ++LL  MDGL    +    +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGLKQRAH----V 341
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
           +++AATN P                            ++L +  + + +  ++D  +++ 
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
Query: 498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID------LPVTEKDFREA 551
              G+ G+D+A L  +AA+ +IR+K+       + +++ E ID      L VT  DFR A
Sbjct: 402 ETHGHVGADLAALCSEAALQAIRKKM------DLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 552 IARCRKS 558
           +++   S
Sbjct: 456 LSQSNPS 462

>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAV 267
           P V W  + GL + K  LQE +  P   P+ F        K  L     G GKT+LAKA+
Sbjct: 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 531
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
           A EC   F ++    L + + GESE  VR +F+
Sbjct: 532 ANECQANFISIKGPELLTMWFGESEANVREIFD 564

>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 44/187 (23%)
Query: 405 KNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKII 464
           + +  +A   AP+ IFIDE+D++   R   +  E  RR  ++LL  MDGL    +    +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGLKQRAH----V 341
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
           +++AATN P                            ++L +  + + +  ++D  +++ 
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
Query: 498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID------LPVTEKDFREA 551
              G+ G+D+A L  +AA+ +IR+K+       + +++ E ID      L VT  DFR A
Sbjct: 402 ETHGHVGADLAALCSEAALQAIRKKM------DLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 552 IARCRKS 558
           +++   S
Sbjct: 456 LSQSNPS 462

>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 44/187 (23%)
Query: 405 KNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKII 464
           + +  +A   AP+ IFIDE+D++   R   +  E  RR  ++LL  MDGL    +    +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGLKQRAH----V 341
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
           +++AATN P                            ++L +  + + +  ++D  +++ 
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
Query: 498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID------LPVTEKDFREA 551
              G+ G+D+A L  +AA+ +IR+K+       + +++ E ID      L VT  DFR A
Sbjct: 402 ETHGHVGADLAALCSEAALQAIRKKM------DLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 552 IARCRKS 558
           +++   S
Sbjct: 456 LSQSNPS 462

>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 44/187 (23%)
Query: 405 KNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKII 464
           + +  +A   AP+ IFIDE+D++   R   +  E  RR  ++LL  MDGL    +    +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGLKQRAH----V 341
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
           +++AATN P                            ++L +  + + +  ++D  +++ 
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
Query: 498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID------LPVTEKDFREA 551
              G+ G+D+A L  +AA+ +IR+K+       + +++ E ID      L VT  DFR A
Sbjct: 402 ETHGHVGADLAALCSEAALQAIRKKM------DLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 552 IARCRKS 558
           +++   S
Sbjct: 456 LSQSNPS 462

>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 44/187 (23%)
Query: 405 KNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKII 464
           + +  +A   AP+ IFIDE+D++   R   +  E  RR  ++LL  MDGL    +    +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGLKQRAH----V 341
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
           +++AATN P                            ++L +  + + +  ++D  +++ 
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
Query: 498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID------LPVTEKDFREA 551
              G+ G+D+A L  +AA+ +IR+K+       + +++ E ID      L VT  DFR A
Sbjct: 402 ETHGHVGADLAALCSEAALQAIRKKM------DLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 552 IARCRKS 558
           +++   S
Sbjct: 456 LSQSNPS 462

>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAV 267
           P V W  + GL + K  LQE +  P   P+ F        K  L     G GKT+LAKA+
Sbjct: 10  PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 69
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
           A EC   F ++    L + + GESE  VR +F+
Sbjct: 70  ANECQANFISIKGPELLTMWFGESEANVREIFD 102

>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 48/208 (23%)
Query: 404 NKNSLF-QARCYAPSTIFIDEVDSLCSMR--GSDSEHEASRRFKAELLIQMDGLNSSLYE 460
           N   +F +AR  AP  +F DE+DS+   R         A+ R   ++L +MDG+++    
Sbjct: 96  NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--- 152
Query: 461 DKIIMILAATNHP-------------YQLLTLCLEG----------------VVIDVNLD 491
            K + I+ ATN P              QL+ + L                  V  DV+L+
Sbjct: 153 -KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLE 211
Query: 492 FHKISKMLEGYTGSDIANLARDAAMMS--------IRRKIMGQTPAQIKEIKQEDIDLPV 543
           F  ++KM  G++G+D+  + + A  ++        IRR+   QT     E++++D  +P 
Sbjct: 212 F--LAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDD-PVPE 268
Query: 544 TEKD-FREAIARCRKSVTAHDLSKYDSW 570
             +D F EA+   R+SV+ +D+ KY+ +
Sbjct: 269 IRRDHFEEAMRFARRSVSDNDIRKYEMF 296

>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 97/221 (43%), Gaps = 47/221 (21%)
Query: 330 YNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGK 389
           Y ++   +  ++ KG L   P       +G ++ +  V G    P+         F+ G 
Sbjct: 32  YPERYANLGAKIPKGVLLVGPPG-----TGKTLLAKAVAGEAHVPF---------FSMGG 77
Query: 390 KGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMR---GSDSEHEASRRFKAE 446
               +   G      ++    A+  APS IFIDE+D++   R   G  S ++   +   +
Sbjct: 78  SSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQ 137
Query: 447 LLIQMDGLNSSLYEDKIIMILAATNHP---------------------------YQLLTL 479
           LL +MDG  S   E+  +++LAATN P                            ++L +
Sbjct: 138 LLAEMDGFGS---ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKV 194
Query: 480 CLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIR 520
            ++GV +  +++  +++K+  G  G+D+AN+  +AA+++ R
Sbjct: 195 HIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235

>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 44/183 (24%)
Query: 405 KNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKII 464
           + +  +A   AP+ IFIDE+D++   R   +  E  RR  ++LL  MDGL    +    +
Sbjct: 287 RKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGLKQRAH----V 341
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
           +++AATN P                            ++L +  + + +  ++D  +++ 
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
Query: 498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID------LPVTEKDFREA 551
              G+ G+D+A L  +AA+ +IR+K+       + +++ E ID      L VT  DFR A
Sbjct: 402 ETHGHVGADLAALCSEAALQAIRKKM------DLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 552 IAR 554
           +++
Sbjct: 456 LSQ 458

>pdb|2CE7|A Chain A, Edta Treated Length = 476

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 54/177 (30%)
Query: 410 QARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMIL 467
           QA+ +AP  +FIDE+D++   RG+     H+   +   +LL++MDG +S     + I+++
Sbjct: 103 QAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK----EGIIVM 158
Query: 468 AATNHPYQLLTLCL------EGVVI-----------------------DVNLDFHKISKM 498
           AATN P  L    L      + +V+                       DVNL+   I+K 
Sbjct: 159 AATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEI--IAKR 216
Query: 499 LEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 555
             G+ G+D+ NL  +AA+++ R    G+                +T KDF EAI R 
Sbjct: 217 TPGFVGADLENLVNEAALLAARE---GRD--------------KITMKDFEEAIDRV 256

>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTM 262
           +++  P+  ++ V GLT+    ++E + LP   PE F        K  +     GTGKT+
Sbjct: 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTL 197
Query: 263 LAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           LA+AVA      F  VS + L  KY GE  ++VR LF M
Sbjct: 198 LARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVM 236

>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 49/184 (26%)
Query: 393 CQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMR-----GSDSEHEASRRFKAEL 447
            Q + G   R+ +     AR +APS IF+DE+DS+ S R     G DSE    +R   EL
Sbjct: 219 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSE---VQRTMLEL 275
Query: 448 LIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDF--------------- 492
           L Q+DG  +S    K I I+ ATN    L    L    ID  ++F               
Sbjct: 276 LNQLDGFETS----KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIH 331
Query: 493 ------------HKISKMLEGYTGSDIANLARDAAMMSIR-RKIMGQTPAQIKEIKQEDI 539
                        K+++ + G +G+D+  +  +A M ++R R+I          + QED 
Sbjct: 332 SRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRI---------HVTQEDF 382
Query: 540 DLPV 543
           +L V
Sbjct: 383 ELAV 386

>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 54/177 (30%)
Query: 410 QARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMIL 467
           QA+ +AP  +FIDE+D++   RG+     H+   +   +LL++MDG +S     + I+++
Sbjct: 103 QAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK----EGIIVM 158
Query: 468 AATNHPYQLLTLCL------EGVVI-----------------------DVNLDFHKISKM 498
           AATN P  L    L      + +V+                       DVNL+   I+K 
Sbjct: 159 AATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEI--IAKR 216
Query: 499 LEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 555
             G+ G+D+ NL  +AA+++ R    G+                +T KDF EAI R 
Sbjct: 217 TPGFVGADLENLVNEAALLAARE---GRD--------------KITMKDFEEAIDRV 256

>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
           P+V +  V GL   K  ++EA+ LP +  + +++         L     GTGKTML KAV
Sbjct: 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAV 226
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           A      F  V+ S    KY GE  ++VR +F +
Sbjct: 227 ANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRL 260

>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 393 CQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMR-----GSDSEHEASRRFKAEL 447
              + G   R+ ++    AR  APS IFIDEVDS+ + R     GSD E +   R   EL
Sbjct: 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQ---RILIEL 299
Query: 448 LIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVNLDF 492
           L QMDG + S    K+IM   ATN    L    L    +D  ++F
Sbjct: 300 LTQMDGFDQS-TNVKVIM---ATNRADTLDPALLRPGRLDRKIEF 340

>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTML 263
           +  +P   ++ + GL      ++E++ LP   PE ++E         +   + GTGKT+L
Sbjct: 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLL 232
Query: 264 AKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           AKAVA +   TF  +  S L  KY G+  +L R +F++
Sbjct: 233 AKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKV 270

>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 92/214 (42%), Gaps = 47/214 (21%)
Query: 336 QMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQS 395
           ++  ++ KG L   P       +G ++ +  + G  K P+         FT       + 
Sbjct: 39  KLGGKIPKGVLMVGPP-----GTGKTLLAKAIAGEAKVPF---------FTISGSDFVEM 84
Query: 396 HEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDG 453
             G      ++   QA+  AP  IFIDE+D++   RG+     H+   +   ++L++MDG
Sbjct: 85  FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG 144
Query: 454 LNSSLYEDKIIMILAATNHP---------------------------YQLLTLCLEGVVI 486
                  ++ I+++AATN P                            Q+L + +  V +
Sbjct: 145 FEG----NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL 200
Query: 487 DVNLDFHKISKMLEGYTGSDIANLARDAAMMSIR 520
             ++D   I++   G++G+D+ANL  +AA+ + R
Sbjct: 201 APDIDAAIIARGTPGFSGADLANLVNEAALFAAR 234

>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
           P   ++ V GL +    L EA+VLP    + FK+        AL     GTGKT+LA+A 
Sbjct: 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARAC 235
Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           A +   TF  +++  L   Y GE  KLVR  F +
Sbjct: 236 AAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFAL 269

>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 59/229 (25%)
Query: 369 GLGKGPWSMVAVVATHFTWGKKGT---CQSHEGHSGRINKNSLFQARCYAPSTIFIDEVD 425
           G GK   +      T+ T+ K       Q + G   ++ +++   A+  AP+ IFIDE+D
Sbjct: 225 GTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELD 284
Query: 426 SLCSMRGSDSEHEASR---RFKAELLIQMDGLNSSLYEDKIIMILAATNH---------- 472
           ++ + R  DSE    R   R   ELL Q+DG +S    D  + +LAATN           
Sbjct: 285 AIGTKR-FDSEKSGDREVQRTMLELLNQLDGFSS----DDRVKVLAATNRVDVLDPALLR 339
Query: 473 ----------PY-------QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAA 515
                     P        Q+L +    +  D ++++ ++++  + + G+ +  +  +A 
Sbjct: 340 SGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAG 399
Query: 516 MMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAI----ARCRKSVT 560
           M+++R    GQ+               V  +DF E I    AR  KSV+
Sbjct: 400 MIALRN---GQS--------------SVKHEDFVEGISEVQARKSKSVS 431

>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 58/225 (25%)
Query: 332 KQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKG 391
           ++ LQ+  +V KGAL   P        G ++ +  V    + P+  +A+    F     G
Sbjct: 29  ERFLQLGAKVPKGALLLGPPGC-----GKTLLAKAVATEAQVPF--LAMAGAEFVEVIGG 81
Query: 392 TCQSHEGHSGRINKNSLF-QARCYAPSTIFIDEVDSLCSMRG------SDSEHEASRRFK 444
                    G     SLF +AR  AP  ++IDE+D++   R       S++E E +    
Sbjct: 82  L--------GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLN-- 131
Query: 445 AELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID--VNLDF---------- 492
            +LL++MDG+ ++   D +I +LA+TN    L    +    +D  V +D           
Sbjct: 132 -QLLVEMDGMGTT---DHVI-VLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIF 186
Query: 493 -----------------HKISKMLEGYTGSDIANLARDAAMMSIR 520
                             +++++  G++G+DIAN+  +AA+ + R
Sbjct: 187 EQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAR 231

>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 34/129 (26%)
Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKA--ELLIQMDGLNSSLYEDKII 464
           LF+ A+ +AP  +FIDE+D++   RGS        R +   +LL++MDG      +D  I
Sbjct: 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE----KDTAI 179
Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
           +++AATN P                            Q+L +   G  +  ++D   ++K
Sbjct: 180 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAK 239
Query: 498 MLEGYTGSD 506
              G+ G+D
Sbjct: 240 RTPGFVGAD 248

>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 34/136 (25%)
Query: 401 GRINKNSLFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKA--ELLIQMDGLNSS 457
           G      LF+ A+ +AP  +FIDE+D++   RGS        R +   +LL++MDG    
Sbjct: 117 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-- 174
Query: 458 LYEDKIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNL 490
             +D  I+++AATN P                            Q+L +   G  +  ++
Sbjct: 175 --KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV 232
Query: 491 DFHKISKMLEGYTGSD 506
           D   ++K   G+ G+D
Sbjct: 233 DLALLAKRTPGFVGAD 248

>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 34/136 (25%)
Query: 401 GRINKNSLFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKA--ELLIQMDGLNSS 457
           G      LF+ A+ +AP  +FIDE+D++   RGS        R +   +LL++MDG    
Sbjct: 108 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-- 165
Query: 458 LYEDKIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNL 490
             +D  I+++AATN P                            Q+L +   G  +  ++
Sbjct: 166 --KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV 223
Query: 491 DFHKISKMLEGYTGSD 506
           D   ++K   G+ G+D
Sbjct: 224 DLALLAKRTPGFVGAD 239

>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 34/130 (26%)
Query: 407 SLFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKA--ELLIQMDGLNSSLYEDKI 463
            LF+ A+ +AP  +FIDE+D++   RGS        R +   +LL++MDG      +D  
Sbjct: 99  DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE----KDTA 154
Query: 464 IMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKIS 496
           I+++AATN P                            Q+L +   G  +  ++D   ++
Sbjct: 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLA 214
Query: 497 KMLEGYTGSD 506
           K   G+ G+D
Sbjct: 215 KRTPGFVGAD 224

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	577
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	7e-56
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	1e-40
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	2e-54
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	2e-43
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	6e-54
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	3e-46
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	6e-53
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	4e-38
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	3e-52
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	4e-39
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	1e-50
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	1e-37
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	1e-48
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	7e-36
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	3e-32
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	5e-22
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	8e-32
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	1e-23
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	6e-22
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	3e-18
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	9e-28
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	3e-22
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	5e-25
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	1e-17
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	4e-20
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	9e-20
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	6e-15
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	7e-11
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	2e-12
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	1e-07
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	4e-12
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	2e-08
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	2e-11
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	8e-09
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	3e-11
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	1e-08
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	3e-11
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	3e-08
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	5e-10
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	1e-08
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	2e-06
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	2e-08
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	1e-06
2krk_A	86	26S protease regulatory subunit 8; structural geno	5e-07
3kw6_A	78	26S protease regulatory subunit 8; structural geno	5e-07
3aji_B	83	S6C, proteasome (prosome, macropain) 26S subunit,	2e-06
3vlf_B	88	26S protease regulatory subunit 7 homolog; heat re	3e-06
2dzn_B	82	26S protease regulatory subunit 6B homolog; ankyri	1e-05

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297

 Score =  189 bits (482), Expect = 7e-56
 Identities = 69/196 (35%), Positives = 100/196 (51%), Gaps = 34/196 (17%)

Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMI 466
           LF  AR   PS IFIDEVDSL S R S SEHEASRR K E L++ DGL  +  +   I++
Sbjct: 105 LFAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGN-PDGDRIVV 162

Query: 467 LAATNHPYQL-------------------------LTLCLEGVVIDVN-LDFHKISKMLE 500
           LAATN P +L                         L   L+     ++     +++K+ +
Sbjct: 163 LAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITD 222

Query: 501 GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVT 560
           GY+GSD+  LA+DAA+  IR         Q+K +    +   +TE+DF  ++ R R+SV 
Sbjct: 223 GYSGSDLTALAKDAALEPIRELN----VEQVKCLDISAMR-AITEQDFHSSLKRIRRSVA 277

Query: 561 AHDLSKYDSWMNEFGS 576
              L+ Y+ W  ++G 
Sbjct: 278 PQSLNSYEKWSQDYGD 293

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297

 Score =  148 bits (375), Expect = 1e-40
 Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 7/106 (6%)

Query: 203 LIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH------ 256
           L++ +  +I++    V+W  +AG   AK  LQE ++LP++ PE F               
Sbjct: 3   LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGP 62

Query: 257 -GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
            G GKT+LA+AVATEC  TF N+S+++LTSKY G+ EKLVR LF +
Sbjct: 63  PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAV 108

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357

 Score =  187 bits (477), Expect = 2e-54
 Identities = 59/197 (29%), Positives = 92/197 (46%), Gaps = 35/197 (17%)

Query: 407 SLFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIM 465
           +LF  ARC  P+ IFIDE+DSL S RG   EHE+SRR K E L+Q+DG  +S   +  I+
Sbjct: 167 ALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTS--SEDRIL 223

Query: 466 ILAATNHPYQL-------------------------LTLCLEGVVIDV-NLDFHKISKML 499
           ++ ATN P ++                         +   +      +   +  +I +  
Sbjct: 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQS 283

Query: 500 EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSV 559
           + ++G+D+  L R+A++  IR        A I  I  + +  P+   DF  A    R SV
Sbjct: 284 DAFSGADMTQLCREASLGPIRSLQ----TADIATITPDQVR-PIAYIDFENAFRTVRPSV 338

Query: 560 TAHDLSKYDSWMNEFGS 576
           +  DL  Y++W   FG 
Sbjct: 339 SPKDLELYENWNKTFGC 355

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357

 Score =  157 bits (399), Expect = 2e-43
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 10/167 (5%)

Query: 142 SNTSASSTKKERKLGFKPAVKKIIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEP 201
           S+     T+        P + K      +                  + E++      EP
Sbjct: 8   SSGVDLGTENLYFQSMVPPIPKQDGGEQNGGMQCKPYGAGPTEPAHPVDERL---KNLEP 64

Query: 202 SLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHS------ 255
            +IE +  +I+ + P V W  +AG+  AKA ++E +V P + P+ F              
Sbjct: 65  KMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFG 124

Query: 256 -HGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
             GTGKT++ K +A++ G TFF++S+S+LTSK+ GE EK+VR LF +
Sbjct: 125 PPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAV 171

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389

 Score =  186 bits (475), Expect = 6e-54
 Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 35/196 (17%)

Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMI 466
           LF  AR   PS IFID+VDSL   R    EH+ASRR K E LI+ DG+ S+   D  +++
Sbjct: 199 LFAVARELQPSIIFIDQVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSA--GDDRVLV 255

Query: 467 LAATNHPYQL-------------------------LTLCLEGVVIDV-NLDFHKISKMLE 500
           + ATN P +L                         L   L      +   +  ++++M +
Sbjct: 256 MGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTD 315

Query: 501 GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVT 560
           GY+GSD+  LA+DAA+  IR       P Q+K +   ++   +   DF E++ + ++SV+
Sbjct: 316 GYSGSDLTALAKDAALGPIRELK----PEQVKNMSASEMR-NIRLSDFTESLKKIKRSVS 370

Query: 561 AHDLSKYDSWMNEFGS 576
              L  Y  W  +FG 
Sbjct: 371 PQTLEAYIRWNKDFGD 386

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389

 Score =  166 bits (422), Expect = 3e-46
 Identities = 55/192 (28%), Positives = 82/192 (42%), Gaps = 7/192 (3%)

Query: 117 PAIIPSRSRSCSHPTTLKKTTRSFGSNTSASSTKKERKLGFKPAVKKIIAANASENSVSH 176
           P    S S   S       +    G + + S +      G K         +      + 
Sbjct: 11  PLTHTSNSLPRSKTVMKTGSAGLSGHHRAPSYSGLSMVSGVKQGSGPAPTTHKGTPKTNR 70

Query: 177 EANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEA 236
                        ++ +      + +L   +  +I+ N   V+++ +AG   AK  LQE 
Sbjct: 71  TNKPSTPTTATRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEI 130

Query: 237 MVLPTIMPEFFKEALERHS-------HGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRG 289
           ++LP++ PE F                G GKTMLAKAVA E   TFFN+S+++LTSKY G
Sbjct: 131 VILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVG 190

Query: 290 ESEKLVRLLFEM 301
           E EKLVR LF +
Sbjct: 191 EGEKLVRALFAV 202

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322

 Score =  182 bits (464), Expect = 6e-53
 Identities = 59/228 (25%), Positives = 93/228 (40%), Gaps = 63/228 (27%)

Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMI 466
           LFQ AR   PS IFIDE+DSLC  R  ++E EA+RR K E L+QM G+      +  I++
Sbjct: 97  LFQLARENKPSIIFIDEIDSLCGSRS-ENESEAARRIKTEFLVQMQGVGVD---NDGILV 152

Query: 467 LAATNHPYQL-------------------------LTLCLEGVVIDV-NLDFHKISKMLE 500
           L ATN P+ L                           L L      +   DF ++ +  +
Sbjct: 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTD 212

Query: 501 GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL------------------- 541
           GY+G+DI+ + RDA M  +R+        +++   + D +                    
Sbjct: 213 GYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEM 272

Query: 542 -------------PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
                         V+  D   +++  + +V  HDL K   +  +FG 
Sbjct: 273 TWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 320

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322

 Score =  142 bits (359), Expect = 4e-38
 Identities = 48/99 (48%), Positives = 62/99 (62%), Gaps = 8/99 (8%)

Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH-------GTGKTML 263
           I+   PNV+W+ VAGL  AK  L+EA++LP   P  F                GTGK+ L
Sbjct: 2   IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61

Query: 264 AKAVATECG-TTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           AKAVATE   +TFF++SSS L SK+ GESEKLV+ LF++
Sbjct: 62  AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQL 100

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322

 Score =  180 bits (459), Expect = 3e-52
 Identities = 65/222 (29%), Positives = 94/222 (42%), Gaps = 57/222 (25%)

Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMI 466
           LF  AR   PS IFID+VD+L   RG + E EASRR K ELL+QM+G+ +   + + +++
Sbjct: 102 LFAMARENKPSIIFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGN---DSQGVLV 157

Query: 467 LAATNHPYQL-------------------------LTLCLEGVVIDVN-LDFHKISKMLE 500
           L ATN P+QL                           + +      +   D+  +  M E
Sbjct: 158 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTE 217

Query: 501 GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL------------------- 541
           GY+GSDIA + +DA M  IR+         +     E   L                   
Sbjct: 218 GYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIE 277

Query: 542 -------PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
                   +T KDF +AI   R +V   DL K + +  +FG 
Sbjct: 278 ADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 319

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322

 Score =  145 bits (367), Expect = 4e-39
 Identities = 53/98 (54%), Positives = 63/98 (64%), Gaps = 7/98 (7%)

Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH-------GTGKTML 263
           IL   PNV+W  VAGL  AK  L+EA++LP   P  FK   +  S        GTGK+ L
Sbjct: 8   ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67

Query: 264 AKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           AKAVATE  +TFF+VSSS L SK+ GESEKLV+ LF M
Sbjct: 68  AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAM 105

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355

 Score =  177 bits (450), Expect = 1e-50
 Identities = 65/222 (29%), Positives = 98/222 (44%), Gaps = 57/222 (25%)

Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMI 466
           LF  AR   PS IFID+VD+L   RG + E EASRR K ELL+QM+G+ +   + + +++
Sbjct: 135 LFAMARENKPSIIFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGN---DSQGVLV 190

Query: 467 LAATNHPYQL-------------------------LTLCLEGVV-IDVNLDFHKISKMLE 500
           L ATN P+QL                           + +     +    D+  +  M E
Sbjct: 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTE 250

Query: 501 GYTGSDIANLARDAAMMSIRRKI-------------------------MGQTPAQIKEIK 535
           GY+GSDIA + +DA M  IR+                            G       +I+
Sbjct: 251 GYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIE 310

Query: 536 QEDIDL-PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
            +++    +T KDF +AI   R +V   DL K + +  +FG 
Sbjct: 311 ADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355

 Score =  141 bits (358), Expect = 1e-37
 Identities = 57/134 (42%), Positives = 68/134 (50%), Gaps = 7/134 (5%)

Query: 175 SHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQ 234
           S  +    G  +    E           L   L   IL   PNV+W  VAGL  AK  L+
Sbjct: 5   SAGSGSNGGNKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALK 64

Query: 235 EAMVLPTIMPEFF-------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKY 287
           EA++LP   P  F          L     GTGK+ LAKAVATE  +TFF+VSSS L SK+
Sbjct: 65  EAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 124

Query: 288 RGESEKLVRLLFEM 301
            GESEKLV+ LF M
Sbjct: 125 MGESEKLVKQLFAM 138

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444

 Score =  174 bits (442), Expect = 1e-48
 Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 63/228 (27%)

Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMI 466
           LFQ AR   PS IFIDE+DSLC  R  ++E EA+RR K E L+QM G+     ++  I++
Sbjct: 219 LFQLARENKPSIIFIDEIDSLCGSRS-ENESEAARRIKTEFLVQMQGVGV---DNDGILV 274

Query: 467 LAATNHPYQL-------------------------LTLCLEGVVIDV-NLDFHKISKMLE 500
           L ATN P+ L                           L L      +   DF ++ +  +
Sbjct: 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTD 334

Query: 501 GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL------------------- 541
           GY+G+DI+ + RDA M  +R+        +++   + D +                    
Sbjct: 335 GYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEM 394

Query: 542 -------------PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 576
                         V+  D   +++  + +V   DL K   +  +FG 
Sbjct: 395 TWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQ 442

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444

 Score =  138 bits (350), Expect = 7e-36
 Identities = 60/182 (32%), Positives = 88/182 (48%), Gaps = 16/182 (8%)

Query: 128 SHPTTLKKTTRSFGSNTSASSTKKERKLGFKPAVKKIIAANASENSVSHEANEKDGVFRQ 187
           +     K++ R+  +     + K +  L  K    +          V  + N+ DG    
Sbjct: 49  AQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQKPVKEEQSGPVDEKGNDSDG---- 104

Query: 188 DIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF 247
               +       +  L   L+  I+   PNV+W+ VAGL  AK  L+EA++LP   P  F
Sbjct: 105 ----EAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLF 160

Query: 248 -------KEALERHSHGTGKTMLAKAVATECG-TTFFNVSSSTLTSKYRGESEKLVRLLF 299
                  +  L     GTGK+ LAKAVATE   +TFF++SSS L SK+ GESEKLV+ LF
Sbjct: 161 TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLF 220

Query: 300 EM 301
           ++
Sbjct: 221 QL 222

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301

 Score =  125 bits (315), Expect = 3e-32
 Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 42/205 (20%)

Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDS--EHEASRRFKAELLIQMDGLNSSLYEDKII 464
           +F  AR  AP  +F DE+DS+   RG +      A+ R   ++L +MDG+++     K +
Sbjct: 100 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK----KNV 155

Query: 465 MILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISK 497
            I+ ATN P                             +L   L    +  ++D   ++K
Sbjct: 156 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK 215

Query: 498 MLEGYTGSDIANLARDAAMMSIRRKI--------MGQTPAQIKEIKQEDIDLPVTEKDFR 549
           M  G++G+D+  + + A  ++IR  I          QT     E++++D    +    F 
Sbjct: 216 MTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFE 275

Query: 550 EAIARCRKSVTAHDLSKYDSWMNEF 574
           EA+   R+SV+ +D+ KY+ +    
Sbjct: 276 EAMRFARRSVSDNDIRKYEMFAQTL 300

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301

 Score = 95.8 bits (239), Expect = 5e-22
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH--------GTGKTMLAKAV 267
           P V W  + GL + K  LQE +  P   P+ F +     S         G GKT+LAKA+
Sbjct: 10  PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 69

Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
           A EC   F ++    L + + GESE  VR +F+
Sbjct: 70  ANECQANFISIKGPELLTMWFGESEANVREIFD 102

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274

 Score =  111 bits (281), Expect = 9e-28
 Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 44/189 (23%)

Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMI 466
           +FQ A+  AP  IF DEVD+LC  R       AS R   +LL +MDGL +     + + I
Sbjct: 95  VFQRAKNSAPCVIFFDEVDALCPRRSDRE-TGASVRVVNQLLTEMDGLEAR----QQVFI 149

Query: 467 LAATNHP------------------------------YQLLTLCLEGVVIDVNLDFHKIS 496
           +AATN P                               + +T       +D +++   I+
Sbjct: 150 MAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIA 209

Query: 497 KML--EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554
             L  + YTG+D++ L R+A++ ++R+++        ++   E  +L V+ K F EA  +
Sbjct: 210 GDLRCDCYTGADLSALVREASICALRQEM------ARQKSGNEKGELKVSHKHFEEAFKK 263

Query: 555 CRKSVTAHD 563
            R S++  D
Sbjct: 264 VRSSISKKD 272

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274

 Score = 96.1 bits (240), Expect = 3e-22
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHG--------TGKTMLAKAV 267
           PNV W  +  L + +  L  A++ P   P+ FK        G         GKT+LAKAV
Sbjct: 5   PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV 64

Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
           A E G  F +V    L + Y GESE+ VR +F+
Sbjct: 65  ANESGLNFISVKGPELLNMYVGESERAVRQVFQ 97

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score =  107 bits (269), Expect = 5e-25
 Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 34/177 (19%)

Query: 410 QARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAA 469
           +A   AP+ IFIDE+D++   R      E  RR  ++LL  MDGL         ++++AA
Sbjct: 292 EAEKNAPAIIFIDELDAIAPKREKTHG-EVERRIVSQLLTLMDGLKQR----AHVIVMAA 346

Query: 470 TNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISKMLEGY 502
           TN P                            ++L +  + + +  ++D  +++    G+
Sbjct: 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406

Query: 503 TGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID-LPVTEKDFREAIARCRKS 558
            G+D+A L  +AA+ +IR+K M     + + I  E ++ L VT  DFR A+++   S
Sbjct: 407 VGADLAALCSEAALQAIRKK-MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHG--------TGK 260
           +D  ++   V ++ + G  +  A ++E + LP   P  FK    +   G        TGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251

Query: 261 TMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
           T++A+AVA E G  FF ++   + SK  GESE  +R  FE
Sbjct: 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFE 291

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285

 Score = 89.6 bits (223), Expect = 4e-20
 Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 8/94 (8%)

Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
           PNV++  + GL +    ++E + LP   PE F++         L     GTGKT+LAKAV
Sbjct: 12  PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV 71

Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           ATE   TF  V  S L  K+ GE   LV+ +F++
Sbjct: 72  ATETNATFIRVVGSELVKKFIGEGASLVKDIFKL 105

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285

 Score = 88.9 bits (221), Expect = 9e-20
 Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 53/182 (29%)

Query: 408 LFQ-ARCYAPSTIFIDEVDSLCSMRGSDSEHEASR---RFKAELLIQMDGLNSSLYEDKI 463
           +F+ A+  APS IFIDE+D++ + R  D+     R   R   +LL +MDG ++      +
Sbjct: 102 IFKLAKEKAPSIIFIDEIDAIAAKRT-DALTGGDREVQRTLMQLLAEMDGFDAR---GDV 157

Query: 464 IMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKIS 496
            +I  ATN P                            ++L +    + +  +++  +I+
Sbjct: 158 KII-GATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIA 216

Query: 497 KMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 556
           KM EG  G+++  +  +A M +IR                      VT  DFR+A+ +  
Sbjct: 217 KMTEGCVGAELKAICTEAGMNAIRELRD-----------------YVTMDDFRKAVEKIM 259

Query: 557 KS 558
           + 
Sbjct: 260 EK 261

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293

 Score = 74.8 bits (184), Expect = 6e-15
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSH--------GTGKTMLAKAVATECG 272
           NK+ G   A A + + +V  T    F K    +           G GK+   + V  + G
Sbjct: 4   NKLDGFYIAPAFMDKLVVHIT--KNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMG 61

Query: 273 TTFFNVSSSTLTSKYRGESEKLVRLLFE 300
                +S+  L S   GE  KL+R  + 
Sbjct: 62  INPIMMSAGELESGNAGEPAKLIRQRYR 89

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293

 Score = 62.5 bits (152), Expect = 7e-11
 Identities = 25/190 (13%), Positives = 57/190 (30%), Gaps = 43/190 (22%)

Query: 411 ARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELL---------IQMDGLNSSLYED 461
            R      +FI+++D+     G  +++  + +     L         +Q+ G+  +  E+
Sbjct: 95  IRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY-NKQEN 153

Query: 462 KIIMILAATNHPYQL---------------------LTLCLEGVVIDVNLDFHKISKMLE 500
             + I+   N    L                           G+    N+    + K+++
Sbjct: 154 ARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVD 213

Query: 501 GYTGSDIAN---LARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRK 557
            + G  I     L        +R+ + G    +I +              F       + 
Sbjct: 214 NFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGD---------KLLNSFDGPPTFEQP 264

Query: 558 SVTAHDLSKY 567
            +T   L +Y
Sbjct: 265 KMTIEKLLEY 274

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 60/183 (32%)

Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRG------SDSEHEASRRFKAELLIQMDGLNSSLYE 460
           LF +AR  AP  ++IDE+D++   R       S++E E +     +LL++MDG+ ++   
Sbjct: 90  LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLN---QLLVEMDGMGTT--- 143

Query: 461 DKIIMILAATNHP---------------------------YQLLTLCLEGVVI--DVNLD 491
           D +I +LA+TN                              ++    L+ + +       
Sbjct: 144 DHVI-VLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFY 202

Query: 492 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREA 551
             +++++  G++G+DIAN+  +AA+ + R                      V   +F  A
Sbjct: 203 SQRLAELTPGFSGADIANICNEAALHAAREG---------HTS--------VHTLNFEYA 245

Query: 552 IAR 554
           + R
Sbjct: 246 VER 248

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 21/99 (21%)

Query: 217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------------ALERHSHGTGKTM 262
            V +  VAG+ EAK  ++E +       ++ K               AL     G GKT+
Sbjct: 2   GVSFKDVAGMHEAKLEVREFV-------DYLKSPERFLQLGAKVPKGALLLGPPGCGKTL 54

Query: 263 LAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           LAKAVATE    F  ++ +       G     VR LF+ 
Sbjct: 55  LAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKE 93

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268

 Score = 66.1 bits (162), Expect = 4e-12
 Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 57/181 (31%)

Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRGSDS------EHEASRRFKAELLIQMDGLNSSLYE 460
           LF  A+  APS IFIDE+D++   R +        E E +     +LL +MDG  S    
Sbjct: 95  LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLN---QLLAEMDGFGSE--N 149

Query: 461 DKIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFH 493
             +I++ AATN P                            ++L + ++GV +  +++  
Sbjct: 150 APVIVL-AATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQ 208

Query: 494 KISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIA 553
           +++K+  G  G+D+AN+  +AA+++ R              ++E     V ++  +EA+ 
Sbjct: 209 EVAKLTAGLAGADLANIINEAALLAGRNN------------QKE-----VRQQHLKEAVE 251

Query: 554 R 554
           R
Sbjct: 252 R 252

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 21/102 (20%)

Query: 213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------------ALERHSHGT 258
              PNV++  +AG  EAK  + E +       +F K                L     GT
Sbjct: 3   AEKPNVRFKDMAGNEEAKEEVVEIV-------DFLKYPERYANLGAKIPKGVLLVGPPGT 55

Query: 259 GKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
           GKT+LAKAVA E    FF++  S+    + G     VR LFE
Sbjct: 56  GKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFE 97

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 48/170 (28%)

Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRGS-----DSEHEASRRFKAELLIQMDGLNSSLYED 461
           LF  A+ +AP  +FIDE+D++   RGS     + E E +     +LL++MDG        
Sbjct: 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN---QLLVEMDGFEKD---T 153

Query: 462 KIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHK 494
            I+++ AATN P                            Q+L +   G  +  ++D   
Sbjct: 154 AIVVM-AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLAL 212

Query: 495 ISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVT 544
           ++K   G+ G+D+ NL  +AA+++ R           ++I  +D++   +
Sbjct: 213 LAKRTPGFVGADLENLLNEAALLAAREG--------RRKITMKDLEEAAS 254

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 21/106 (19%)

Query: 209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------------ALERH 254
             +L   P V +  VAG  EAK  L+E +       EF K                L   
Sbjct: 4   GSVLTEAPKVTFKDVAGAEEAKEELKEIV-------EFLKNPSRFHEMGARIPKGVLLVG 56

Query: 255 SHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
             G GKT LA+AVA E    F   S S     + G     VR LFE
Sbjct: 57  PPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFE 102

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 48/170 (28%)

Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRGS-----DSEHEASRRFKAELLIQMDGLNSSLYED 461
           LF  A+ +AP  +FIDE+D++   RGS     + E E +     +LL++MDG        
Sbjct: 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN---QLLVEMDGFEKD---T 177

Query: 462 KIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHK 494
            I+++ AATN P                            Q+L +   G  +  ++D   
Sbjct: 178 AIVVM-AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLAL 236

Query: 495 ISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVT 544
           ++K   G+ G+D+ NL  +AA+++ R           ++I  +D++   +
Sbjct: 237 LAKRTPGFVGADLENLLNEAALLAAREG--------RRKITMKDLEEAAS 278

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 34/104 (32%), Positives = 40/104 (38%), Gaps = 21/104 (20%)

Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------------ALERHSH 256
           +L   P V +  VAG  EAK  L+E +       EF K                L     
Sbjct: 30  VLTEAPKVTFKDVAGAEEAKEELKEIV-------EFLKNPSRFHEMGARIPKGVLLVGPP 82

Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
           G GKT LA+AVA E    F   S S     + G     VR LFE
Sbjct: 83  GVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFE 126

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 40/147 (27%)

Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRGS-----DSEHEASRRFKAELLIQMDGLNSSLYED 461
           +F QA+  AP  IFIDE+D++   RG+       E E +     ++L++MDG   +   +
Sbjct: 96  MFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN---QMLVEMDGFEGN---E 149

Query: 462 KIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFHK 494
            II+I AATN P                            Q+L + +  V +  ++D   
Sbjct: 150 GIIVI-AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAI 208

Query: 495 ISKMLEGYTGSDIANLARDAAMMSIRR 521
           I++   G++G+D+ANL  +AA+ + R 
Sbjct: 209 IARGTPGFSGADLANLVNEAALFAARG 235

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 21/102 (20%)

Query: 213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------------ALERHSHGT 258
           ++     +  VAG  EAK  + E +       E+ +E               L     GT
Sbjct: 4   EDQIKTTFADVAGCDEAKEEVAELV-------EYLREPSRFQKLGGKIPKGVLMVGPPGT 56

Query: 259 GKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 300
           GKT+LAKA+A E    FF +S S     + G     VR +FE
Sbjct: 57  GKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFE 98

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 20/172 (11%), Positives = 52/172 (30%), Gaps = 34/172 (19%)

Query: 397 EGHSGRINKNSLF-QARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN 455
                 + K  +F  A     S + +D+++ L            S      LL+ +    
Sbjct: 107 TAKCQAMKK--IFDDAYKSQLSCVVVDDIERLLDYVPIG--PRFSNLVLQALLVLLKKAP 162

Query: 456 SSLYEDKIIMILAATNHPYQLLTLCLEG---VVIDV--------------------NLDF 492
               + + ++I+  T+    L  + +       I V                    + + 
Sbjct: 163 P---QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKER 219

Query: 493 HKISKMLEGYT---GSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL 541
             I++ ++G     G     +  + ++       + +  A ++E     +D 
Sbjct: 220 TTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGASPLDF 271

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEA-----LERHSHGTGKTMLAKAVATE 270
            +   N +    +    + +   L     +          L      +GKT LA  +A E
Sbjct: 28  ASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87

Query: 271 CGTTFFNVSSSTLTSKYRGESE-KLVRLLFE 300
               F  + S      +   ++ + ++ +F+
Sbjct: 88  SNFPFIKICSPDKMIGFSETAKCQAMKKIFD 118

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 8e-09
 Identities = 62/498 (12%), Positives = 124/498 (24%), Gaps = 186/498 (37%)

Query: 177 EANEKDGVFRQDIREKIFYSTGFEPSLIETLE-KDILQNNPNVQWNKVAGLTEAKAILQE 235
           E  E    ++ DI         FE + ++  + KD+     ++   +     E   I+  
Sbjct: 10  ETGEHQYQYK-DILSV------FEDAFVDNFDCKDVQDMPKSILSKE-----EIDHIIMS 57

Query: 236 AMVL--------------PTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS 281
              +                ++ +F +E L           L   + TE          S
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR-----INYKFLMSPIKTEQ------RQPS 106

Query: 282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRV 341
            +T  Y  + ++L                N+ F               YN     ++R  
Sbjct: 107 MMTRMYIEQRDRLYN-------------DNQVF--------AK-----YN-----VSRLQ 135

Query: 342 LKGALTTAPTRAENQESGPSIFSVMVDG-LGKGPWSMVAVVA------THFT----WGKK 390
               L  A           ++    +DG LG G   +   V               W   
Sbjct: 136 PYLKLRQA---LLELRPAKNVL---IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 391 GTCQSHEG------------------------------HSGRINKNSLFQARCYAPSTIF 420
             C S E                               HS +     L +++ Y    + 
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 421 IDEV---------DSLCSM----RGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMIL 467
           +  V         +  C +    R    +            I +D  + +L  D++  +L
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 468 --------------AATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARD 513
                           T +P     L +    I   L         + +      ++  D
Sbjct: 308 LKYLDCRPQDLPREVLTTNP---RRLSIIAESIRDGLA------TWDNW-----KHVNCD 353

Query: 514 AAMMSIRRKIMGQTPAQIKE------IKQEDIDLP----------VTEKDFREAIARCRK 557
                I   +    PA+ ++      +      +P          V + D    + +  K
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 558 -----------SVTAHDL 564
                      +++   +
Sbjct: 414 YSLVEKQPKESTISIPSI 431

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 71/499 (14%), Positives = 144/499 (28%), Gaps = 140/499 (28%)

Query: 182 DGVFRQD---IREKIFYSTGFEPSLIETL---EKDILQNNPNV--QWN-----KVAGLTE 228
           + V R +   +   I      +PS++  +   ++D L N+  V  ++N         L +
Sbjct: 84  EEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 229 AKAILQEAMVLPTI----MPEFFKEALERHSHGTGKTMLAKAVATECGTT---FFNVSSS 281
           A   L E      +    +             G+GKT +A  V           F +   
Sbjct: 143 A---LLELRPAKNVLIDGVL------------GSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 282 TLTSKYRGES--EKLVRLLFEMVSFLVGL--HSNKTFYLVGVLNGEPTTTFA-------- 329
            L +    E+  E L +LL+++         HS+     +  +  E              
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 330 ------YNKQILQM---NRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKG------- 373
                  N +       + ++L   LTT   +  +  S  +   + +D            
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 374 --------------PWSM-------VAVVATHF-----TWG--KKGTCQSHEGHSGRINK 405
                         P  +       ++++A        TW   K   C         I +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT----TIIE 360

Query: 406 NSL-------FQARCYAPSTIFIDEVD---SLCSMRGSDSEHEASRRFKAEL----LIQM 451
           +SL       ++ + +   ++F         L S+   D           +L    L++ 
Sbjct: 361 SSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 452 DGLNSSLYEDKIIMILAAT-NHPYQLLTLCLEGVVIDVNLDFHKISK-MLEGYTGSDI-- 507
               S++    I + L     + Y L    ++   I    D   +    L+ Y  S I  
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 508 ----ANLARDAAMMS--------IRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 555
                       +          + +KI   + A        +     T +  +      
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-----TLQQLK----FY 530

Query: 556 RKSVTAHDLSKYDSWMNEF 574
           +  +  +D  KY+  +N  
Sbjct: 531 KPYICDND-PKYERLVNAI 548

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 6e-04
 Identities = 36/304 (11%), Positives = 76/304 (25%), Gaps = 109/304 (35%)

Query: 332 KQILQMNRRVLKGA----LTTAPTRAE-----------NQESGPSIFSVMVDGLGKG-PW 375
           K +  M + +L       +  +                 QE     F  + + L     +
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF--VEEVLRINYKF 93

Query: 376 SMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPS---TIFIDEVDSLCSMRG 432
            M                             S  +     PS    ++I++ D L +   
Sbjct: 94  LM-----------------------------SPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 433 SDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEG--------V 484
             +++  SR    +  ++   L  +L E +                + ++G        V
Sbjct: 125 VFAKYNVSRL---QPYLK---LRQALLELR--------PAKN----VLIDGVLGSGKTWV 166

Query: 485 VIDVNLDFHKISKMLE--------GYTGSD------IANLARDAA-MMSIRRKIMGQTPA 529
            +DV    +K+   ++            S       +  L        + R         
Sbjct: 167 ALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 530 QIKEIKQEDIDLPVTEKDFREAI----------------ARCRKSVTAHDLSKYDSWMNE 573
           +I  I+ E   L +  K +   +                  C+  +T       D     
Sbjct: 226 RIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 574 FGSH 577
             +H
Sbjct: 285 TTTH 288

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 59/181 (32%)

Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRGS------DSEHEASRRFKAELLIQMDGLNSSLYE 460
           LF QA+ +AP  +FIDE+D++   RG+      D E E +     +LL++MDG +S    
Sbjct: 100 LFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHD-EREQTLN---QLLVEMDGFDSK--- 152

Query: 461 DKIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFH 493
           + II++ AATN P                            ++L +      +  +++  
Sbjct: 153 EGIIVM-AATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLE 211

Query: 494 KISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIA 553
            I+K   G+ G+D+ NL  +AA+++ R              + +     +T KDF EAI 
Sbjct: 212 IIAKRTPGFVGADLENLVNEAALLAAREG------------RDK-----ITMKDFEEAID 254

Query: 554 R 554
           R
Sbjct: 255 R 255

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 21/82 (25%)

Query: 214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------------ALERHSHGTG 259
            N  V +  V G  EA   L+E       + EF K+               L     GTG
Sbjct: 9   GNKRVTFKDVGGAEEAIEELKE-------VVEFLKDPSKFNRIGARMPKGILLVGPPGTG 61

Query: 260 KTMLAKAVATECGTTFFNVSSS 281
           KT+LA+AVA E    FF++S S
Sbjct: 62  KTLLARAVAGEANVPFFHISGS 83

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 50/167 (29%)

Query: 408 LF-QARCYAPSTIFIDEVDSLCSMRGS------DSEHEASRRFKAELLIQMDGLNSSLYE 460
           LF  A+ +AP  +FIDE+D++   RGS      D E E +     +LL++MDG       
Sbjct: 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGND-EREQTLN---QLLVEMDGFEKD--- 167

Query: 461 DKIIMILAATNHP---------------------------YQLLTLCLEGVVIDVNLDFH 493
             I+++ AATN P                            Q+L +   G  +  ++D  
Sbjct: 168 TAIVVM-AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLA 226

Query: 494 KISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID 540
            ++K   G+ G+D+ NL  +AA+++ R           ++I  +D++
Sbjct: 227 LLAKRTPGFVGADLENLLNEAALLAAREG--------RRKITMKDLE 265

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 21/85 (24%)

Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------------ALERHSH 256
           +L   P V +  VAG  EAK  L+E       + EF K                L     
Sbjct: 21  VLTEAPKVTFKDVAGAEEAKEELKE-------IVEFLKNPSRFHEMGARIPKGVLLVGPP 73

Query: 257 GTGKTMLAKAVATECGTTFFNVSSS 281
           G GKT LA+AVA E    F   S S
Sbjct: 74  GVGKTHLARAVAGEARVPFITASGS 98

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86

 Score = 46.7 bits (112), Expect = 5e-07
 Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 19/68 (27%)

Query: 487 DVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEK 546
            +NL   KI++++ G +G+++  +  +A M ++R + +                  VT++
Sbjct: 32  GINLR--KIAELMPGASGAEVKGVCTEAGMYALRERRV-----------------HVTQE 72

Query: 547 DFREAIAR 554
           DF  A+A+
Sbjct: 73  DFEMAVAK 80

>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Length = 78

 Score = 46.3 bits (111), Expect = 5e-07
 Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 19/68 (27%)

Query: 487 DVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEK 546
            +NL   KI++++ G +G+++  +  +A M ++R + +                  VT++
Sbjct: 24  GINLR--KIAELMPGASGAEVKGVCTEAGMYALRERRV-----------------HVTQE 64

Query: 547 DFREAIAR 554
           DF  A+A+
Sbjct: 65  DFEMAVAK 72

>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Length = 83

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 19/72 (26%)

Query: 487 DVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEK 546
           +V+L+        +  +G+DI ++ +++ M+++R                      V  K
Sbjct: 22  EVDLE--DYVARPDKISGADINSICQESGMLAVRENRY-----------------IVLAK 62

Query: 547 DFREAIARCRKS 558
           DF +A     K 
Sbjct: 63  DFEKAYKTVIKK 74

>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Length = 88

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 22/83 (26%)

Query: 483 GVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLP 542
            + ++  + +  IS++    TG+++ ++  +A M +IR +         +++        
Sbjct: 16  SMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR---------RKV-------- 58

Query: 543 VTEKDFREAIARC-----RKSVT 560
            TEKDF +A+ +      + S T
Sbjct: 59  ATEKDFLKAVDKVISGYKKFSST 81

>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Length = 82

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 19/68 (27%)

Query: 487 DVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEK 546
           + +LD   +    +  +G+ IA + ++A + ++R+                     + + 
Sbjct: 19  EADLD--SLIIRNDSLSGAVIAAIMQEAGLRAVRKNRY-----------------VILQS 59

Query: 547 DFREAIAR 554
           D  EA A 
Sbjct: 60  DLEEAYAT 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	577
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	100.0
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	100.0
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	100.0
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	100.0
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	100.0
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	100.0
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	100.0
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	100.0
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	100.0
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	100.0
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	100.0
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	100.0
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	100.0
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	100.0
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	100.0
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	100.0
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.98
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.97
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.96
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.96
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.96
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.95
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.93
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.93
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.93
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.91
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.88
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.88
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.87
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.86
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.75
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.75
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.74
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.73
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.72
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.72
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.7
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.69
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.65
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.64
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.61
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.61
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.6
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.6
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.6
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.58
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	99.57
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.56
3pvs_A	447	Replication-associated recombination protein A; ma	99.56
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.52
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.5
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.5
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.49
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.48
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.47
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.46
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.46
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.45
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.44
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.44
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.43
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.43
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.42
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.42
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.42
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.41
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.41
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.41
3bos_A	242	Putative DNA replication factor; P-loop containing	99.41
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.4
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.4
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.38
3co5_A	143	Putative two-component system transcriptional RES	99.36
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	99.35
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.35
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.32
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	99.3
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.28
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.27
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.25
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.25
3vlf_B	88	26S protease regulatory subunit 7 homolog; heat re	99.19
3aji_B	83	S6C, proteasome (prosome, macropain) 26S subunit,	99.18
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	99.11
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	99.08
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.07
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	99.06
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.98
2dzn_B	82	26S protease regulatory subunit 6B homolog; ankyri	98.97
2krk_A	86	26S protease regulatory subunit 8; structural geno	98.94
3kw6_A	78	26S protease regulatory subunit 8; structural geno	98.83
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	98.79
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.73
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.53
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.52
2qgz_A	308	Helicase loader, putative primosome component; str	98.48
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.41
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.32
2fna_A	357	Conserved hypothetical protein; structural genomic	98.32
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	98.19
3f8t_A	506	Predicted ATPase involved in replication control,	98.17
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	98.12
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.06
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.93
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.82
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.81
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.72
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.65
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.61
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.53
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.44
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.44
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	97.41
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.36
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.32
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.31
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.31
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.3
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.29
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.25
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.24
1via_A	175	Shikimate kinase; structural genomics, transferase	97.23
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.23
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.22
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.21
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.21
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.2
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.2
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.19
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.17
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.16
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.15
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.1
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.1
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.1
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.09
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.07
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.04
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.03
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.03
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.03
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.02
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.02
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.01
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.0
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.0
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.99
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.98
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.97
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.96
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.96
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.95
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.93
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.92
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.92
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.92
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.91
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.9
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.9
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.9
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.9
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	96.9
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.89
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.88
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.86
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.84
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.83
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.83
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.82
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.78
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.78
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.77
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.76
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.74
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.74
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.74
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.72
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.69
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.68
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.64
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.64
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.63
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.63
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.63
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.62
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.61
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.6
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.57
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.55
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.55
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.54
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.53
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.5
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.49
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.43
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	96.39
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.37
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.34
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.33
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.33
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.29
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.28
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.27
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.23
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.21
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	96.2
3io5_A	333	Recombination and repair protein; storage dimer, i	96.17
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.14
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.11
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.08
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.05
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.04
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.04
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.03
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.03
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.02
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.99
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.98
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.98
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.97
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.94
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.89
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.88
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.87
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.87
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.86
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.85
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.85
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	95.85
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.84
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.84
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.84
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	95.79
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.77
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.74
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.74
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	95.74
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.67
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.62
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.61
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.6
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.55
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.53
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.53
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.51
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.51
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.5
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.48
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.47
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.46
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.43
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.31
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.31
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.31
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.29
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.26
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.24
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.23
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.23
3bor_A	237	Human initiation factor 4A-II; translation initiat	95.23
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.22
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.17
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.17
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	95.13
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.1
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.06
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	95.05
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	94.93
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.93
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.91
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	94.76
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.74
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	94.7
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.7
2z0m_A	337	337AA long hypothetical ATP-dependent RNA helicase	94.69
1hv8_A	367	Putative ATP-dependent RNA helicase MJ0669; RNA-bi	94.61
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.6
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.57
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	94.57
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	94.55
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.52
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	94.4
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.39
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	94.37
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	94.35
3ice_A	422	Transcription termination factor RHO; transcriptio	94.32
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.22
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	94.16
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	94.15
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	94.11
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	94.09
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	94.05
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.02
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	93.91
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	93.9
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	93.88
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	93.84
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	93.81
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	93.81
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	93.79
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	93.77
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	93.66
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	93.62
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	93.6
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	93.55
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	93.48
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	93.42
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	93.42
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	93.4
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	93.37
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	93.36
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.33
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	93.31
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	93.31
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.21
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	93.2
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	93.19
2fwr_A	472	DNA repair protein RAD25; DNA unwinding, XPB, DNA	93.1
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	93.09
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	93.07
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	93.06
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.06
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	93.05
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	92.99
2eyu_A	261	Twitching motility protein PILT; pilus retraction	92.96
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	92.88
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	92.86
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	92.83
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	92.76
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	92.76
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	92.74
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	92.74
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	92.67
1p9r_A	418	General secretion pathway protein E; bacterial typ	92.66
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	92.62
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	92.6
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	92.51
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	92.46
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	92.44
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	92.44
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	92.39
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	92.36
1nrj_B	218	SR-beta, signal recognition particle receptor beta	92.34
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	92.32
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	92.31
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	92.27
3tbk_A	555	RIG-I helicase domain; DECH helicase, ATP binding,	92.2
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	92.19
2wji_A	165	Ferrous iron transport protein B homolog; membrane	92.19
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	92.19
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.14
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	92.08
2oca_A	510	DAR protein, ATP-dependent DNA helicase UVSW; ATP-	92.07
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	92.05
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	92.02
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	92.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	91.99
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	91.97
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	91.96
3i5x_A	563	ATP-dependent RNA helicase MSS116; protein-RNA com	91.95
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	91.95
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	91.93
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	91.92
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	91.92
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	91.92
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	91.91
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	91.9
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	91.89
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	91.86
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	91.86
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	91.85
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	91.82
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	91.77
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	91.72
1wrb_A	253	DJVLGB; RNA helicase, DEAD BOX, VASA, structural g	91.7
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	91.68
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	91.64
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	91.62
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	91.6
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	91.6
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	91.6
2ewv_A	372	Twitching motility protein PILT; pilus retraction	91.59
2og2_A	359	Putative signal recognition particle receptor; nuc	91.57
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	91.57
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	91.55
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	91.55
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	91.55
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	91.52
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	91.51
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	91.49
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	91.48
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	91.47
2db3_A	434	ATP-dependent RNA helicase VASA; DEAD-BOX, protein	91.46
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	91.46
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	91.43
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	91.42
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	91.41
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	91.4
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	91.39
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	91.39
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	91.38
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	91.37
3sqw_A	579	ATP-dependent RNA helicase MSS116, mitochondrial;	91.37
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	91.35
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	91.34
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	91.32
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	91.31
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	91.3
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	91.28
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	91.25
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.2
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	91.17
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	91.12
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	91.07
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	91.04
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	91.02
2p6r_A	702	Afuhel308 helicase; protein-DNA complex, SF2 helic	90.99
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	90.94
2hf9_A	226	Probable hydrogenase nickel incorporation protein	90.89
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	90.85
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	90.84
1b0u_A	262	Histidine permease; ABC transporter, transport pro	90.79
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	90.79
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	90.71
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	90.7
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	90.67
1g6h_A	257	High-affinity branched-chain amino acid transport	90.67
4a2p_A	556	RIG-I, retinoic acid inducible protein I; hydrolas	90.66
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	90.66
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	90.65
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	90.58
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	90.57
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	90.55
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	90.54
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	90.54
1ji0_A	240	ABC transporter; ATP binding protein, structural g	90.54
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	90.54
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	90.52
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	90.52
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	90.51
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	90.5
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	90.5
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	90.5
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	90.48
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	90.43
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	90.43
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	90.42
1sgw_A	214	Putative ABC transporter; structural genomics, P p	90.4
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	90.31
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	90.3
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	90.29
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	90.29
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	90.24
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	90.21
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	90.16
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	90.16
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	90.13
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	90.13
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	90.12
2ghi_A	260	Transport protein; multidrug resistance protein, M	90.1
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	90.09
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	90.08
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	90.07
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	90.06
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	90.05
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	90.04
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	90.03
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	90.02
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	90.01
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	89.99
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	89.98
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	89.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	89.89
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	89.87
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	89.87
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	89.85
3oiy_A	414	Reverse gyrase helicase domain; topoisomerase, DNA	89.84
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	89.82
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	89.79
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	89.74
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	89.71
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	89.71
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	89.65
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	89.62
1oyw_A	523	RECQ helicase, ATP-dependent DNA helicase; winged	89.6
2fh5_B	214	SR-beta, signal recognition particle receptor beta	89.53
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	89.47
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	89.47
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	89.39
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	89.39
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	89.38
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	89.34
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	89.31
4f92_B	1724	U5 small nuclear ribonucleoprotein 200 kDa helica;	89.27
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	89.27
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	89.23
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	89.22
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	89.18
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	89.13
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	89.11

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=100.00  E-value=5.1e-48  Score=437.99  Aligned_cols=360  Identities=24%  Similarity=0.336  Sum_probs=248.1

Q ss_pred             hcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      ...+.+.|+||+|++++++.|++.+.+|+.+|+++        +|||||||||||||+|||+||++++++|+.++++++.
T Consensus       196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~  275 (806)
T 3cf2_A          196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM  275 (806)
T ss_dssp             CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred             ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence            34678999999999999999999999999988765        6899999999999999999999999999999999999


Q ss_pred             cccccchHHHHHHHHHHhhhh------------------------------------hccccCcceee------------
Q psy16204        285 SKYRGESEKLVRLLFEMVSFL------------------------------------VGLHSNKTFYL------------  316 (577)
Q Consensus       285 ~k~~G~~e~~vr~lF~~a~~~------------------------------------~~~~~~~~~~~------------  316 (577)
                      ++|.|++++.++.+|+.|...                                    .+...+..|++            
T Consensus       276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~  355 (806)
T 3cf2_A          276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP  355 (806)
T ss_dssp             SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCT
T ss_pred             cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCH
Confidence            999999999999999854311                                    11111112211            


Q ss_pred             --------------------------------------------------------------------------------
Q psy16204        317 --------------------------------------------------------------------------------  316 (577)
Q Consensus       317 --------------------------------------------------------------------------------  316 (577)
                                                                                                      
T Consensus       356 ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~  435 (806)
T 3cf2_A          356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE  435 (806)
T ss_dssp             TTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCC
T ss_pred             HHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccccc
Confidence                                                                                            


Q ss_pred             ---------------------------------ccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccc
Q psy16204        317 ---------------------------------VGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIF  363 (577)
Q Consensus       317 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  363 (577)
                                                       +..++..|.++.|....+.++.+.+.++-..+..+...+..+|.+++
T Consensus       436 ~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvL  515 (806)
T 3cf2_A          436 TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVL  515 (806)
T ss_dssp             CCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCE
T ss_pred             ccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEE
Confidence                                             22233456666666777777778888888888888889999999999


Q ss_pred             cccccCCCCCCcchhhhhhhhcccCCCCccc---CCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhH
Q psy16204        364 SVMVDGLGKGPWSMVAVVATHFTWGKKGTCQ---SHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHE  438 (577)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~  438 (577)
                      .|+++||||+..+.+.+.+..+++.......   .++|+.++.++.+|..|+.+.||||||||||.+++.|+..  +.+.
T Consensus       516 l~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~  595 (806)
T 3cf2_A          516 FYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG  595 (806)
T ss_dssp             EESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC------------
T ss_pred             EecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCch
Confidence            9999999999888877888888887777665   5699999999999999999999999999999999998643  3456


Q ss_pred             HHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccC
Q psy16204        439 ASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLD  491 (577)
Q Consensus       439 ~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vd  491 (577)
                      ..++++++||.+||++...    .+|+||||||+|+.|+++++|+++++.                           ++|
T Consensus       596 ~~~rv~~~lL~~mdg~~~~----~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d  671 (806)
T 3cf2_A          596 AADRVINQILTEMDGMSTK----KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD  671 (806)
T ss_dssp             --CHHHHHHHHHHHSSCSS----SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC--
T ss_pred             HHHHHHHHHHHHHhCCCCC----CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC
Confidence            7789999999999999864    679999999999999999999544432                           458


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHH--------hhhhccCCCCCCCHHHHHHHHHHhCCCCCHHH
Q psy16204        492 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQI--------KEIKQEDIDLPVTEKDFREAIARCRKSVTAHD  563 (577)
Q Consensus       492 l~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~--------~~~~~~~~~~~It~~df~~Al~~~~psv~~~~  563 (577)
                      ++.||+.|+||||+||.++|++|++.++|+.+........        ......+....|+++||++|++.++|||++++
T Consensus       672 l~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~  751 (806)
T 3cf2_A          672 LEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDND  751 (806)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC-----------
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHH
Confidence            9999999999999999999999999999998753211110        01111223457999999999999999999999


Q ss_pred             HHHHHHHHHhhCC
Q psy16204        564 LSKYDSWMNEFGS  576 (577)
Q Consensus       564 ~~~~~~~~~~~~~  576 (577)
                      +.+|++|.++|+.
T Consensus       752 l~~y~~~~~~f~~  764 (806)
T 3cf2_A          752 IRKYEMFAQTLQQ  764 (806)
T ss_dssp             ----CCCC-----
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998863

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-44  Score=377.24  Aligned_cols=231  Identities=34%  Similarity=0.511  Sum_probs=199.9

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      ....+.|+++|+||+|++++|+.|++++.+|+.+|+.|        +|+|||||||||||+||++||.+++++|+.++++
T Consensus       137 ~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s  216 (405)
T 4b4t_J          137 MMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA  216 (405)
T ss_dssp             CEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred             ccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhH
Confidence            55667899999999999999999999999999998765        7899999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204        282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS  361 (577)
Q Consensus       282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  361 (577)
                      ++.++|+|++++++|.+|..                                                            
T Consensus       217 ~l~sk~vGese~~vr~lF~~------------------------------------------------------------  236 (405)
T 4b4t_J          217 ELVQKYIGEGSRMVRELFVM------------------------------------------------------------  236 (405)
T ss_dssp             GGSCSSTTHHHHHHHHHHHH------------------------------------------------------------
T ss_pred             HhhccccchHHHHHHHHHHH------------------------------------------------------------
Confidence            99999999999999999987                                                            


Q ss_pred             cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHH
Q psy16204        362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEA  439 (577)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~  439 (577)
                                                                       |+.++||||||||||.+++.|+.+  +.+..
T Consensus       237 -------------------------------------------------Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~  267 (405)
T 4b4t_J          237 -------------------------------------------------AREHAPSIIFMDEIDSIGSTRVEGSGGGDSE  267 (405)
T ss_dssp             -------------------------------------------------HHHTCSEEEEEESSSCCTTSCSCSSSGGGGH
T ss_pred             -------------------------------------------------HHHhCCceEeeecchhhccCCCCCCCCCcHH
Confidence                                                             888999999999999999988543  33556


Q ss_pred             HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCH
Q psy16204        440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDF  492 (577)
Q Consensus       440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl  492 (577)
                      .++++++||.+||++...    .+|+||||||+|+.||++++|+++++.                           ++|+
T Consensus       268 ~~~~l~~lL~~lDg~~~~----~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl  343 (405)
T 4b4t_J          268 VQRTMLELLNQLDGFETS----KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL  343 (405)
T ss_dssp             HHHHHHHHHHHHHTTTCC----CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH
T ss_pred             HHHHHHHHHHhhhccCCC----CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH
Confidence            788999999999998854    679999999999999999999655442                           4589


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy16204        493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSW  570 (577)
Q Consensus       493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~~~~~  570 (577)
                      +.||+.|+||||+||.++|++|++.|+|+..                 ..||.+||+.|+.++.+......++.++.|
T Consensus       344 ~~lA~~t~G~SGADi~~l~~eA~~~Air~~~-----------------~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~  404 (405)
T 4b4t_J          344 RKVAEKMNGCSGADVKGVCTEAGMYALRERR-----------------IHVTQEDFELAVGKVMNKNQETAISVAKLF  404 (405)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC-----------------SBCCHHHHHHHHHHHHHHHTCC--------
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CCcCHHHHHHHHHHHhCccccccchhHhhh
Confidence            9999999999999999999999999998742                 469999999999998766555555555555

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-42  Score=367.66  Aligned_cols=226  Identities=29%  Similarity=0.489  Sum_probs=200.9

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      ....+.|+++|+||+|++++|+.|++.+.+|+.+|+.|        +|||||||||||||+||++||.+++++|+.++++
T Consensus       171 ~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s  250 (437)
T 4b4t_I          171 MKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS  250 (437)
T ss_dssp             CEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred             eeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence            34567899999999999999999999999999988765        7899999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204        282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS  361 (577)
Q Consensus       282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  361 (577)
                      ++.++|+|+++++++.+|..                                                            
T Consensus       251 ~l~sk~vGesek~ir~lF~~------------------------------------------------------------  270 (437)
T 4b4t_I          251 ELIQKYLGDGPRLCRQIFKV------------------------------------------------------------  270 (437)
T ss_dssp             GGCCSSSSHHHHHHHHHHHH------------------------------------------------------------
T ss_pred             HhhhccCchHHHHHHHHHHH------------------------------------------------------------
Confidence            99999999999999999987                                                            


Q ss_pred             cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC--hhHH
Q psy16204        362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS--EHEA  439 (577)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~--~~~~  439 (577)
                                                                       |+.++||||||||||.++..|..++  .+..
T Consensus       271 -------------------------------------------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~  301 (437)
T 4b4t_I          271 -------------------------------------------------AGENAPSIVFIDEIDAIGTKRYDSNSGGERE  301 (437)
T ss_dssp             -------------------------------------------------HHHTCSEEEEEEEESSSSCCCSCSSCSSCCH
T ss_pred             -------------------------------------------------HHhcCCcEEEEehhhhhcccCCCCCCCccHH
Confidence                                                             8889999999999999999985433  2446


Q ss_pred             HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCH
Q psy16204        440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDF  492 (577)
Q Consensus       440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl  492 (577)
                      ..++++.||..||++...    .+|+||||||+|+.||++++|+++++                           .++|+
T Consensus       302 ~~~~l~~LL~~lDg~~~~----~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl  377 (437)
T 4b4t_I          302 IQRTMLELLNQLDGFDDR----GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL  377 (437)
T ss_dssp             HHHHHHHHHHHHHHCCCS----SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH
T ss_pred             HHHHHHHHHHHhhCcCCC----CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH
Confidence            678899999999998754    67999999999999999999855443                           35689


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHH
Q psy16204        493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLS  565 (577)
Q Consensus       493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~  565 (577)
                      +.||+.|+||||+||.++|++|++.|+|+..                 ..||.+||++|++++.|+.+.++++
T Consensus       378 ~~LA~~T~GfSGADI~~l~~eA~~~Air~~~-----------------~~It~eDf~~Al~rv~~~~~~e~le  433 (437)
T 4b4t_I          378 ETLVTTKDDLSGADIQAMCTEAGLLALRERR-----------------MQVTAEDFKQAKERVMKNKVEENLE  433 (437)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC-----------------SCBCHHHHHHHHHHHHHHHCCCSSS
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CccCHHHHHHHHHHHhCCCChhhHH
Confidence            9999999999999999999999999998743                 4699999999999998887766553

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-41  Score=361.75  Aligned_cols=226  Identities=33%  Similarity=0.468  Sum_probs=198.8

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      ..+...|+++|+||+|++++|+.|.+.+.+|+.+|+.|        +|||||||||||||+||++||.+++++|+.++++
T Consensus       170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s  249 (437)
T 4b4t_L          170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS  249 (437)
T ss_dssp             CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred             eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence            45567899999999999999999999999999998765        7999999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204        282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS  361 (577)
Q Consensus       282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  361 (577)
                      ++.++|+|+++++++.+|..                                                            
T Consensus       250 ~l~sk~~Gese~~ir~~F~~------------------------------------------------------------  269 (437)
T 4b4t_L          250 GIVDKYIGESARIIREMFAY------------------------------------------------------------  269 (437)
T ss_dssp             GTCCSSSSHHHHHHHHHHHH------------------------------------------------------------
T ss_pred             hhccccchHHHHHHHHHHHH------------------------------------------------------------
Confidence            99999999999999999987                                                            


Q ss_pred             cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC--hhHH
Q psy16204        362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS--EHEA  439 (577)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~--~~~~  439 (577)
                                                                       |+.+.||||||||||.++..|.+++  .+..
T Consensus       270 -------------------------------------------------A~~~~P~IifiDEiDai~~~R~~~~~~~~~~  300 (437)
T 4b4t_L          270 -------------------------------------------------AKEHEPCIIFMDEVDAIGGRRFSEGTSADRE  300 (437)
T ss_dssp             -------------------------------------------------HHHSCSEEEEEECCCSSSCCCSSSCCSSTTH
T ss_pred             -------------------------------------------------HHhcCCceeeeecccccccccccCCCCcchH
Confidence                                                             8889999999999999999885433  3456


Q ss_pred             HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------------ccCH
Q psy16204        440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------------NLDF  492 (577)
Q Consensus       440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------------~vdl  492 (577)
                      ..++++.||.+||++.+.    .+|+||||||+|+.||++++|+++|+.                           ++|+
T Consensus       301 ~~~~l~~lL~~lDg~~~~----~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl  376 (437)
T 4b4t_L          301 IQRTLMELLTQMDGFDNL----GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF  376 (437)
T ss_dssp             HHHHHHHHHHHHHSSSCT----TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH
T ss_pred             HHHHHHHHHHHhhcccCC----CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH
Confidence            778999999999998854    679999999999999999998765432                           4589


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHH
Q psy16204        493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLS  565 (577)
Q Consensus       493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~  565 (577)
                      ..||+.|+||||+||.++|++|++.|+|+..                 ..|+.+||.+|+.++.|+...+...
T Consensus       377 ~~lA~~t~G~sGADi~~l~~eA~~~air~~~-----------------~~i~~~d~~~Al~~v~~~~k~e~~~  432 (437)
T 4b4t_L          377 EAAVKMSDGFNGADIRNCATEAGFFAIRDDR-----------------DHINPDDLMKAVRKVAEVKKLEGTI  432 (437)
T ss_dssp             HHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC-----------------SSBCHHHHHHHHHHHHHTCC-----
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CCCCHHHHHHHHHHHHhccCcccch
Confidence            9999999999999999999999999998743                 3699999999999998876554433

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-41  Score=362.30  Aligned_cols=232  Identities=33%  Similarity=0.487  Sum_probs=196.1

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      +.+.+.|+++|+||+|++++|+.|++.+.+|+.+|+.+        +|||||||||||||+||++||.+++++|+.++++
T Consensus       198 m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s  277 (467)
T 4b4t_H          198 MTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGS  277 (467)
T ss_dssp             CEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred             eeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhH
Confidence            34567899999999999999999999999999888754        7999999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204        282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS  361 (577)
Q Consensus       282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  361 (577)
                      ++.++|+|+++++++.+|..                                                            
T Consensus       278 ~L~sk~vGesek~ir~lF~~------------------------------------------------------------  297 (467)
T 4b4t_H          278 ELVQKYVGEGARMVRELFEM------------------------------------------------------------  297 (467)
T ss_dssp             GGCCCSSSHHHHHHHHHHHH------------------------------------------------------------
T ss_pred             HhhcccCCHHHHHHHHHHHH------------------------------------------------------------
Confidence            99999999999999999987                                                            


Q ss_pred             cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHH
Q psy16204        362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEA  439 (577)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~  439 (577)
                                                                       |+.++||||||||||.++..|+.+  +.+..
T Consensus       298 -------------------------------------------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~  328 (467)
T 4b4t_H          298 -------------------------------------------------ARTKKACIIFFDEIDAVGGARFDDGAGGDNE  328 (467)
T ss_dssp             -------------------------------------------------HHHTCSEEEEEECCTTTSBCCSSSSCGGGGH
T ss_pred             -------------------------------------------------HHhcCCceEeecccccccccccCcCCCccHH
Confidence                                                             888999999999999999988643  34556


Q ss_pred             HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCH
Q psy16204        440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDF  492 (577)
Q Consensus       440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl  492 (577)
                      ..++++.||.+||++...    .+|+||||||+|+.|+++++|+.+|+                           .++|+
T Consensus       329 ~~~~l~~lL~~lDg~~~~----~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl  404 (467)
T 4b4t_H          329 VQRTMLELITQLDGFDPR----GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW  404 (467)
T ss_dssp             HHHHHHHHHHHHHSSCCT----TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH
T ss_pred             HHHHHHHHHHHhhccCCC----CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH
Confidence            778999999999998754    67999999999999999999854443                           24589


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCC-HHHHHHHHHHH
Q psy16204        493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVT-AHDLSKYDSWM  571 (577)
Q Consensus       493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~-~~~~~~~~~~~  571 (577)
                      +.||+.|+||||+||.+||++|++.|+|+..                 ..||.+||.+|++++.+... .....+|.+|.
T Consensus       405 ~~LA~~T~GfSGADI~~l~~eAa~~Air~~~-----------------~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n  467 (467)
T 4b4t_H          405 ELISRLCPNSTGAELRSVCTEAGMFAIRARR-----------------KVATEKDFLKAVDKVISGYKKFSSTSRYMQYN  467 (467)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC-----------------SSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence            9999999999999999999999999998853                 46999999999999854332 23456777774

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-41  Score=360.07  Aligned_cols=222  Identities=31%  Similarity=0.476  Sum_probs=198.3

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      ......|+++|+||+|++++|+.|.+.+.+|+.+|+.|        +|||||||||||||++|++||.+++++|+.++++
T Consensus       170 ~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s  249 (434)
T 4b4t_M          170 MEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAP  249 (434)
T ss_dssp             CEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred             cccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence            34457899999999999999999999999999988764        7899999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204        282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS  361 (577)
Q Consensus       282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  361 (577)
                      ++.++|+|+++++++.+|..                                                            
T Consensus       250 ~l~~~~vGese~~ir~lF~~------------------------------------------------------------  269 (434)
T 4b4t_M          250 QLVQMYIGEGAKLVRDAFAL------------------------------------------------------------  269 (434)
T ss_dssp             GGCSSCSSHHHHHHHHHHHH------------------------------------------------------------
T ss_pred             hhhhcccchHHHHHHHHHHH------------------------------------------------------------
Confidence            99999999999999999987                                                            


Q ss_pred             cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCCh--hHH
Q psy16204        362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSE--HEA  439 (577)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~--~~~  439 (577)
                                                                       |+.++||||||||||.++..|..+..  +..
T Consensus       270 -------------------------------------------------A~~~aP~IifiDEiDal~~~R~~~~~~~~~~  300 (434)
T 4b4t_M          270 -------------------------------------------------AKEKAPTIIFIDELDAIGTKRFDSEKSGDRE  300 (434)
T ss_dssp             -------------------------------------------------HHHHCSEEEEEECTHHHHCCCSSGGGGTTHH
T ss_pred             -------------------------------------------------HHhcCCeEEeecchhhhhhccCCCCCCCchH
Confidence                                                             88899999999999999999865332  345


Q ss_pred             HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCH
Q psy16204        440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDF  492 (577)
Q Consensus       440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl  492 (577)
                      ..++++.||..||++.+.    .+|+||||||+|+.||++++|+++++                           .++|+
T Consensus       301 ~~~~~~~lL~~ldg~~~~----~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl  376 (434)
T 4b4t_M          301 VQRTMLELLNQLDGFSSD----DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW  376 (434)
T ss_dssp             HHHHHHHHHHHHTTSCSS----CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH
T ss_pred             HHHHHHHHHHHhhccCCC----CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH
Confidence            667899999999998864    67999999999999999998855443                           35689


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCH
Q psy16204        493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTA  561 (577)
Q Consensus       493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~  561 (577)
                      +.||+.|+||||+||.++|++|++.|+|+..                 ..|+.+||.+|+++++|+.+.
T Consensus       377 ~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~-----------------~~i~~~Df~~Al~~v~~~~~~  428 (434)
T 4b4t_M          377 QELARSTDEFNGAQLKAVTVEAGMIALRNGQ-----------------SSVKHEDFVEGISEVQARKSK  428 (434)
T ss_dssp             HHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC-----------------SSBCHHHHHHHHHSCSSSCCC
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CCcCHHHHHHHHHHHhCCCCc
Confidence            9999999999999999999999999998853                 479999999999999998763

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-41  Score=357.76  Aligned_cols=225  Identities=32%  Similarity=0.469  Sum_probs=198.2

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      ......|+++|+||+|++++|+.|.+.+.+|+.+|+.+        +|+|||||||||||++|++||.+++++|+.++++
T Consensus       161 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~  240 (428)
T 4b4t_K          161 MGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS  240 (428)
T ss_dssp             CEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred             ccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence            34457889999999999999999999999999888654        7899999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCc
Q psy16204        282 TLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPS  361 (577)
Q Consensus       282 ~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  361 (577)
                      ++.++|+|+++.+|+.+|..                                                            
T Consensus       241 ~l~~~~~Ge~e~~ir~lF~~------------------------------------------------------------  260 (428)
T 4b4t_K          241 EFVHKYLGEGPRMVRDVFRL------------------------------------------------------------  260 (428)
T ss_dssp             GTCCSSCSHHHHHHHHHHHH------------------------------------------------------------
T ss_pred             hhhccccchhHHHHHHHHHH------------------------------------------------------------
Confidence            99999999999999999987                                                            


Q ss_pred             cccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHH
Q psy16204        362 IFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEA  439 (577)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~  439 (577)
                                                                       |+.++||||||||+|.++..|+..  +.+..
T Consensus       261 -------------------------------------------------A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~  291 (428)
T 4b4t_K          261 -------------------------------------------------ARENAPSIIFIDEVDSIATKRFDAQTGSDRE  291 (428)
T ss_dssp             -------------------------------------------------HHHTCSEEEEEECTHHHHCSCSSSCSCCCCH
T ss_pred             -------------------------------------------------HHHcCCCeeechhhhhhhccccCCCCCCChH
Confidence                                                             888999999999999999988443  33456


Q ss_pred             HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc----------------------------ccC
Q psy16204        440 SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV----------------------------NLD  491 (577)
Q Consensus       440 ~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~----------------------------~vd  491 (577)
                      ..+++++||.+||++.+.    .+|+||||||+|+.||++++|+++++.                            ++|
T Consensus       292 ~~r~l~~lL~~ldg~~~~----~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d  367 (428)
T 4b4t_K          292 VQRILIELLTQMDGFDQS----TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD  367 (428)
T ss_dssp             HHHHHHHHHHHHHHSCSS----CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC
T ss_pred             HHHHHHHHHHHhhCCCCC----CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC
Confidence            778999999999998854    679999999999999999999654432                            348


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHH-hCCCCCHHHH
Q psy16204        492 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR-CRKSVTAHDL  564 (577)
Q Consensus       492 l~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~-~~psv~~~~~  564 (577)
                      ++.||..|+||||+||.++|++|++.|+|+..                 ..|+.+||++|+.+ ++++.+.+++
T Consensus       368 l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~-----------------~~i~~~d~~~A~~~~~~~~~~~~~~  424 (428)
T 4b4t_K          368 LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-----------------YVILQSDLEEAYATQVKTDNTVDKF  424 (428)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC-----------------SSBCHHHHHHHHHHHSCSCCCSSCC
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-----------------CCCCHHHHHHHHHHhhCccCCccHh
Confidence            99999999999999999999999999998843                 46999999999987 5676665443

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.5e-39  Score=328.02  Aligned_cols=252  Identities=40%  Similarity=0.656  Sum_probs=212.8

Q ss_pred             hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc-------ceeEEecCCCCChHHHHHHHHHHh-CCeEEEEecCcc
Q psy16204        212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSHGTGKTMLAKAVATEC-GTTFFNVSSSTL  283 (577)
Q Consensus       212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-------k~ILL~GPpGtGKT~LAkaLA~el-~~~fv~v~~s~l  283 (577)
                      +...++++|++|+|++++|+.|++.+.+|+.+++.+       +++|||||||||||+||+++|+++ +.+|+.++++++
T Consensus         3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l   82 (322)
T 1xwi_A            3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL   82 (322)
T ss_dssp             EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred             eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence            346788999999999999999999999988877653       689999999999999999999999 899999999999


Q ss_pred             ccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccc
Q psy16204        284 TSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIF  363 (577)
Q Consensus       284 ~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  363 (577)
                      .++|.|+.+..++.+|..                                                              
T Consensus        83 ~~~~~g~~~~~~~~lf~~--------------------------------------------------------------  100 (322)
T 1xwi_A           83 VSKWLGESEKLVKNLFQL--------------------------------------------------------------  100 (322)
T ss_dssp             CCSSCCSCHHHHHHHHHH--------------------------------------------------------------
T ss_pred             HhhhhhHHHHHHHHHHHH--------------------------------------------------------------
Confidence            999999999999999976                                                              


Q ss_pred             cccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHH
Q psy16204        364 SVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRF  443 (577)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v  443 (577)
                                                                     ++...|+||||||||.++..+... .....+++
T Consensus       101 -----------------------------------------------a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~  132 (322)
T 1xwi_A          101 -----------------------------------------------ARENKPSIIFIDEIDSLCGSRSEN-ESEAARRI  132 (322)
T ss_dssp             -----------------------------------------------HHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHH
T ss_pred             -----------------------------------------------HHhcCCcEEEeecHHHhccccccc-cchHHHHH
Confidence                                                           677789999999999999987654 35667889


Q ss_pred             HHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc--------------------------cccCHHHHHH
Q psy16204        444 KAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID--------------------------VNLDFHKISK  497 (577)
Q Consensus       444 ~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~--------------------------~~vdl~~LA~  497 (577)
                      ++.||..|+++..   ...+|+||+|||.|+.|++++++|+...                          .+.++..||+
T Consensus       133 ~~~ll~~ld~~~~---~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~  209 (322)
T 1xwi_A          133 KTEFLVQMQGVGV---DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGR  209 (322)
T ss_dssp             HHHHHHHHHCSSS---CCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHH
T ss_pred             HHHHHHHHhcccc---cCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence            9999999999764   2367999999999999999999887321                          1236789999


Q ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHHHhcCChh-------------------------------HHhhhhccC-CCCCCCH
Q psy16204        498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPA-------------------------------QIKEIKQED-IDLPVTE  545 (577)
Q Consensus       498 ~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~-------------------------------~~~~~~~~~-~~~~It~  545 (577)
                      .++||+|+||.+||++|++.++|+........                               .+..+..+. ...+|++
T Consensus       210 ~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  289 (322)
T 1xwi_A          210 KTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSM  289 (322)
T ss_dssp             TCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCH
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCH
Confidence            99999999999999999999999976321000                               000111111 2358999


Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q psy16204        546 KDFREAIARCRKSVTAHDLSKYDSWMNEFGS  576 (577)
Q Consensus       546 ~df~~Al~~~~psv~~~~~~~~~~~~~~~~~  576 (577)
                      +||.+|++.++||++++++.+|++|.++||+
T Consensus       290 ~df~~al~~~~ps~~~~~~~~~~~~~~~~~~  320 (322)
T 1xwi_A          290 SDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ  320 (322)
T ss_dssp             HHHHHHHHTCCCSCCHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999996

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=100.00  E-value=9e-39  Score=322.81  Aligned_cols=254  Identities=44%  Similarity=0.652  Sum_probs=210.6

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc-------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF-------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~-------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      .++..++++.|++|+|++++++.|.+++.+|+.+++.       .+++|||||||||||++|++||++++.+|+.+++++
T Consensus         7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~   86 (322)
T 3eie_A            7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD   86 (322)
T ss_dssp             CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred             ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence            4567889999999999999999999999888777654       368999999999999999999999999999999999


Q ss_pred             cccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcc
Q psy16204        283 LTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSI  362 (577)
Q Consensus       283 l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  362 (577)
                      +.++|.|+.+..++.+|..                                                             
T Consensus        87 l~~~~~g~~~~~~~~~f~~-------------------------------------------------------------  105 (322)
T 3eie_A           87 LVSKWMGESEKLVKQLFAM-------------------------------------------------------------  105 (322)
T ss_dssp             HHTTTGGGHHHHHHHHHHH-------------------------------------------------------------
T ss_pred             HhhcccchHHHHHHHHHHH-------------------------------------------------------------
Confidence            9999999999999999976                                                             


Q ss_pred             ccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHH
Q psy16204        363 FSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRR  442 (577)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~  442 (577)
                                                                      ++...|+||||||||.++..++.+ .+...++
T Consensus       106 ------------------------------------------------a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~  136 (322)
T 3eie_A          106 ------------------------------------------------ARENKPSIIFIDQVDALTGTRGEG-ESEASRR  136 (322)
T ss_dssp             ------------------------------------------------HHHTSSEEEEEECGGGGSCC-------CCTHH
T ss_pred             ------------------------------------------------HHhcCCeEEEechhhhhhccCCCC-cchHHHH
Confidence                                                            777889999999999999877543 3456778


Q ss_pred             HHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc--------------------------cccCHHHHH
Q psy16204        443 FKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID--------------------------VNLDFHKIS  496 (577)
Q Consensus       443 v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~--------------------------~~vdl~~LA  496 (577)
                      +++.||..|++...   ...+|+||+|||.|+.|++++++||...                          .+.++..||
T Consensus       137 ~~~~ll~~l~~~~~---~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la  213 (322)
T 3eie_A          137 IKTELLVQMNGVGN---DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLG  213 (322)
T ss_dssp             HHHHHHHHHGGGGT---SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHhccccc---cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence            99999999998753   2367999999999999999998876321                          123678999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhH-------------------------Hhhhhcc-CCCCCCCHHHHHH
Q psy16204        497 KMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQ-------------------------IKEIKQE-DIDLPVTEKDFRE  550 (577)
Q Consensus       497 ~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~-------------------------~~~~~~~-~~~~~It~~df~~  550 (577)
                      ..++||+|+||.++|++|++.++|+.........                         +..+..+ ....+||.+||.+
T Consensus       214 ~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~  293 (322)
T 3eie_A          214 AMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLK  293 (322)
T ss_dssp             HTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHH
Confidence            9999999999999999999999999864321110                         0111111 1236799999999


Q ss_pred             HHHHhCCCCCHHHHHHHHHHHHhhCC
Q psy16204        551 AIARCRKSVTAHDLSKYDSWMNEFGS  576 (577)
Q Consensus       551 Al~~~~psv~~~~~~~~~~~~~~~~~  576 (577)
                      |++.++||++.+++.+|++|.++||+
T Consensus       294 al~~~~ps~~~~~~~~~~~~~~~~~~  319 (322)
T 3eie_A          294 AIKSTRPTVNEDDLLKQEQFTRDFGQ  319 (322)
T ss_dssp             HHHHSCCSSCTTHHHHHHHHHHHHC-
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999996

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=100.00  E-value=1.2e-37  Score=320.53  Aligned_cols=254  Identities=45%  Similarity=0.664  Sum_probs=199.8

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCcccc-------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFF-------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      .+....+++.|++|+|++.+++.|.+++.+|+..++.+       +++|||||||||||+||++||++++.+|+.+++++
T Consensus        40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~  119 (355)
T 2qp9_X           40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD  119 (355)
T ss_dssp             -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred             hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHH
Confidence            44556788999999999999999999998887776543       57999999999999999999999999999999999


Q ss_pred             cccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcc
Q psy16204        283 LTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSI  362 (577)
Q Consensus       283 l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  362 (577)
                      +..+|.|+.+..++.+|..                                                             
T Consensus       120 l~~~~~g~~~~~~~~~f~~-------------------------------------------------------------  138 (355)
T 2qp9_X          120 LVSKWMGESEKLVKQLFAM-------------------------------------------------------------  138 (355)
T ss_dssp             HHSCC---CHHHHHHHHHH-------------------------------------------------------------
T ss_pred             HhhhhcchHHHHHHHHHHH-------------------------------------------------------------
Confidence            9999999999999988876                                                             


Q ss_pred             ccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHH
Q psy16204        363 FSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRR  442 (577)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~  442 (577)
                                                                      ++...|+||||||||.++..++.+ .+...++
T Consensus       139 ------------------------------------------------a~~~~~~vl~iDEid~l~~~r~~~-~~~~~~~  169 (355)
T 2qp9_X          139 ------------------------------------------------ARENKPSIIFIDQVDALTGTRGEG-ESEASRR  169 (355)
T ss_dssp             ------------------------------------------------HHHTSSEEEEEECGGGGTC-------CTHHHH
T ss_pred             ------------------------------------------------HHHcCCeEEEEechHhhcccCCCC-cchHHHH
Confidence                                                            677789999999999999877543 4566788


Q ss_pred             HHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc--------------------------cccCHHHHH
Q psy16204        443 FKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID--------------------------VNLDFHKIS  496 (577)
Q Consensus       443 v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~--------------------------~~vdl~~LA  496 (577)
                      +++.||..|+++..   ...+|+||+|||.|+.|++++++||...                          .+.++..||
T Consensus       170 ~~~~ll~~l~~~~~---~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la  246 (355)
T 2qp9_X          170 IKTELLVQMNGVGN---DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLG  246 (355)
T ss_dssp             HHHHHHHHHHHCC------CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHH
T ss_pred             HHHHHHHHhhcccc---cCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHH
Confidence            99999999998764   2356999999999999999999877321                          123678999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHhcCCh------------------h-------HHhhhhcc-CCCCCCCHHHHHH
Q psy16204        497 KMLEGYTGSDIANLARDAAMMSIRRKIMGQTP------------------A-------QIKEIKQE-DIDLPVTEKDFRE  550 (577)
Q Consensus       497 ~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~------------------~-------~~~~~~~~-~~~~~It~~df~~  550 (577)
                      ..++||+|+||.++|++|++.++++.......                  .       .+..+... ....+|+.+||.+
T Consensus       247 ~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~  326 (355)
T 2qp9_X          247 AMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLK  326 (355)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHH
Confidence            99999999999999999999999997532100                  0       00011111 1235799999999


Q ss_pred             HHHHhCCCCCHHHHHHHHHHHHhhCC
Q psy16204        551 AIARCRKSVTAHDLSKYDSWMNEFGS  576 (577)
Q Consensus       551 Al~~~~psv~~~~~~~~~~~~~~~~~  576 (577)
                      ||+.++||++.+++.+|++|.++||+
T Consensus       327 Al~~~~ps~~~~~~~~~~~~~~~~~~  352 (355)
T 2qp9_X          327 AIKSTRPTVNEDDLLKQEQFTRDFGQ  352 (355)
T ss_dssp             HHHHSCCSSCHHHHHHHHHHHHHTC-
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999996

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=100.00  E-value=4.7e-37  Score=325.54  Aligned_cols=257  Identities=40%  Similarity=0.649  Sum_probs=202.7

Q ss_pred             HHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc-------cceeEEecCCCCChHHHHHHHHHHh-CCeEEEE
Q psy16204        207 LEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF-------FKEALERHSHGTGKTMLAKAVATEC-GTTFFNV  278 (577)
Q Consensus       207 ~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~-------~k~ILL~GPpGtGKT~LAkaLA~el-~~~fv~v  278 (577)
                      +...+....+++.|++|+|++.+++.|.+++.+|+.++..       ++++||+||||||||+||++||.++ +.+|+.+
T Consensus       120 ~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v  199 (444)
T 2zan_A          120 LQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI  199 (444)
T ss_dssp             ----CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEE
T ss_pred             hhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEE
Confidence            3445666788999999999999999999999887766654       3689999999999999999999999 8999999


Q ss_pred             ecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCC
Q psy16204        279 SSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQES  358 (577)
Q Consensus       279 ~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  358 (577)
                      +++++.++|.|+.+..++.+|..                                                         
T Consensus       200 ~~~~l~~~~~g~~~~~~~~~f~~---------------------------------------------------------  222 (444)
T 2zan_A          200 SSSDLVSKWLGESEKLVKNLFQL---------------------------------------------------------  222 (444)
T ss_dssp             CCC---------CCCTHHHHHHH---------------------------------------------------------
T ss_pred             eHHHHHhhhcchHHHHHHHHHHH---------------------------------------------------------
Confidence            99999999988888888888865                                                         


Q ss_pred             CCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhH
Q psy16204        359 GPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHE  438 (577)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~  438 (577)
                                                                          ++...|+||||||||.+++.++.. ...
T Consensus       223 ----------------------------------------------------a~~~~~~vl~iDEid~l~~~~~~~-~~~  249 (444)
T 2zan_A          223 ----------------------------------------------------ARENKPSIIFIDEIDSLCGSRSEN-ESE  249 (444)
T ss_dssp             ----------------------------------------------------HHHSCSEEEEESCTTTTCCCSSCC-CCG
T ss_pred             ----------------------------------------------------HHHcCCeEEEEechHhhccCCCCc-ccc
Confidence                                                                677789999999999999877554 456


Q ss_pred             HHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc--------------------------cccCH
Q psy16204        439 ASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID--------------------------VNLDF  492 (577)
Q Consensus       439 ~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~--------------------------~~vdl  492 (577)
                      ..+++++.||..|+++..   ...+|+||+|||.|+.|++++++||...                          .+.++
T Consensus       250 ~~~~~~~~lL~~l~~~~~---~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l  326 (444)
T 2zan_A          250 AARRIKTEFLVQMQGVGV---DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADF  326 (444)
T ss_dssp             GGHHHHHHHHTTTTCSSC---CCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHH
T ss_pred             HHHHHHHHHHHHHhCccc---CCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHH
Confidence            678899999999998753   2367999999999999999999987321                          12367


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCC------------------------hhHH-------hhhhcc-CCC
Q psy16204        493 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQT------------------------PAQI-------KEIKQE-DID  540 (577)
Q Consensus       493 ~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~------------------------~~~~-------~~~~~~-~~~  540 (577)
                      ..||..++||+|+||..+|++|++.++|+......                        +...       ..+... ...
T Consensus       327 ~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (444)
T 2zan_A          327 QELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLE  406 (444)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccC
Confidence            89999999999999999999999999999764210                        0000       001111 123


Q ss_pred             CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q psy16204        541 LPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS  576 (577)
Q Consensus       541 ~~It~~df~~Al~~~~psv~~~~~~~~~~~~~~~~~  576 (577)
                      .+||++||.+||+.++|||+.+++.+|++|.++||+
T Consensus       407 ~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~~~  442 (444)
T 2zan_A          407 PVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQ  442 (444)
T ss_dssp             CCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSCTT
T ss_pred             CccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcC
Confidence            589999999999999999999999999999999996

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=100.00  E-value=3.3e-36  Score=301.91  Aligned_cols=250  Identities=31%  Similarity=0.546  Sum_probs=201.8

Q ss_pred             hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc--------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF--------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~--------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      ....+.+.|++|+|++++++.|.+++.+|+.+++.        .+++||+||||||||++|++||.+++.+|+.++++++
T Consensus         6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l   85 (301)
T 3cf0_A            6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL   85 (301)
T ss_dssp             CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred             cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence            45678899999999999999999999988776653        3679999999999999999999999999999999999


Q ss_pred             ccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccc
Q psy16204        284 TSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIF  363 (577)
Q Consensus       284 ~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  363 (577)
                      .++|.|+.+..++.+|..                                                              
T Consensus        86 ~~~~~g~~~~~~~~~f~~--------------------------------------------------------------  103 (301)
T 3cf0_A           86 LTMWFGESEANVREIFDK--------------------------------------------------------------  103 (301)
T ss_dssp             HHHHHTTCTTHHHHHHHH--------------------------------------------------------------
T ss_pred             HhhhcCchHHHHHHHHHH--------------------------------------------------------------
Confidence            888888888888877765                                                              


Q ss_pred             cccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC--hhHHHH
Q psy16204        364 SVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS--EHEASR  441 (577)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~--~~~~~~  441 (577)
                                                                     +....|+||||||||.++..++...  ......
T Consensus       104 -----------------------------------------------a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~  136 (301)
T 3cf0_A          104 -----------------------------------------------ARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD  136 (301)
T ss_dssp             -----------------------------------------------HHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCC
T ss_pred             -----------------------------------------------HHhcCCeEEEEEChHHHhhccCCCcCCcchHHH
Confidence                                                           6777899999999999998764321  123345


Q ss_pred             HHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhc--Ccc-------------------------cccccCHHH
Q psy16204        442 RFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLE--GVV-------------------------IDVNLDFHK  494 (577)
Q Consensus       442 ~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allr--r~~-------------------------i~~~vdl~~  494 (577)
                      ++++.||..|+++..    ..+|+||+|||+++.|++++++  +|.                         +..+++++.
T Consensus       137 ~~~~~lL~~l~~~~~----~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~  212 (301)
T 3cf0_A          137 RVINQILTEMDGMST----KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEF  212 (301)
T ss_dssp             HHHHHHHHHHHSSCT----TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHH
T ss_pred             HHHHHHHHHhhcccC----CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHH
Confidence            788999999998764    3679999999999998888887  431                         122457899


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChh-HHh-------hhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHH
Q psy16204        495 ISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPA-QIK-------EIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSK  566 (577)
Q Consensus       495 LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~-~~~-------~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~  566 (577)
                      +|..++||+|+||.++|++|++.++++.+...... ...       .......-..|+.+||.+||+.++||++.+++.+
T Consensus       213 la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~  292 (301)
T 3cf0_A          213 LAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRK  292 (301)
T ss_dssp             HHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHH
Confidence            99999999999999999999999998875321100 000       0000111257999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy16204        567 YDSWMNEF  574 (577)
Q Consensus       567 ~~~~~~~~  574 (577)
                      |++|.++|
T Consensus       293 ~~~~~~~~  300 (301)
T 3cf0_A          293 YEMFAQTL  300 (301)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999998

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.5e-35  Score=300.30  Aligned_cols=263  Identities=39%  Similarity=0.679  Sum_probs=213.3

Q ss_pred             cCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc-------cceeEEecCCCCChHHHHHHHHH
Q psy16204        197 TGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF-------FKEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~-------~k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .++++.+++.....+....+++.|++|+|++.+++.|.+.+.+|+..+..       .+++||+||||||||++|++||+
T Consensus        60 ~~~~~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A           60 KNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             TTSCHHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred             ccCChHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            45677777777888888899999999999999999999999887665553       46899999999999999999999


Q ss_pred             HhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCC
Q psy16204        270 ECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTA  349 (577)
Q Consensus       270 el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  349 (577)
                      +++.+|+.++++++..+|.|+.+..++.+|..                                                
T Consensus       140 ~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~------------------------------------------------  171 (357)
T 3d8b_A          140 QSGATFFSISASSLTSKWVGEGEKMVRALFAV------------------------------------------------  171 (357)
T ss_dssp             HTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHH------------------------------------------------
T ss_pred             HcCCeEEEEehHHhhccccchHHHHHHHHHHH------------------------------------------------
Confidence            99999999999999999999998888888865                                                


Q ss_pred             cccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEcccccccc
Q psy16204        350 PTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCS  429 (577)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~  429 (577)
                                                                                   +....|+||||||||.++.
T Consensus       172 -------------------------------------------------------------a~~~~~~vl~iDEid~l~~  190 (357)
T 3d8b_A          172 -------------------------------------------------------------ARCQQPAVIFIDEIDSLLS  190 (357)
T ss_dssp             -------------------------------------------------------------HHHTCSEEEEEETHHHHTB
T ss_pred             -------------------------------------------------------------HHhcCCeEEEEeCchhhhc
Confidence                                                                         6677899999999999998


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc---------------------
Q psy16204        430 MRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV---------------------  488 (577)
Q Consensus       430 ~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~---------------------  488 (577)
                      .+.. +.+....++++.||..+++....  ...+|+||+|||.++.|++++++|+....                     
T Consensus       191 ~~~~-~~~~~~~~~~~~lL~~l~~~~~~--~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~  267 (357)
T 3d8b_A          191 QRGD-GEHESSRRIKTEFLVQLDGATTS--SEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKE  267 (357)
T ss_dssp             C-------CHHHHHHHHHHHHHHC------CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTS
T ss_pred             cCCC-CcchHHHHHHHHHHHHHhccccc--CCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhc
Confidence            7643 33556778999999999987632  33679999999999999999998874211                     


Q ss_pred             -----ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHH
Q psy16204        489 -----NLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHD  563 (577)
Q Consensus       489 -----~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~  563 (577)
                           +.++..|++.++||+++||..||++|++.++|+....    ....+ .......|+.+||.+|++.++|+++.++
T Consensus       268 ~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~----~~~~~-~~~~~~~i~~~d~~~al~~~~ps~~~~~  342 (357)
T 3d8b_A          268 QCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTA----DIATI-TPDQVRPIAYIDFENAFRTVRPSVSPKD  342 (357)
T ss_dssp             CBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC---------------CCCBCHHHHHHHHHHHGGGCCCCC
T ss_pred             CCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhh----hhccc-cccccCCcCHHHHHHHHHhcCCCCCHHH
Confidence                 1146789999999999999999999999999874211    11111 1112357999999999999999999999


Q ss_pred             HHHHHHHHHhhCC
Q psy16204        564 LSKYDSWMNEFGS  576 (577)
Q Consensus       564 ~~~~~~~~~~~~~  576 (577)
                      +++|++|.+.||+
T Consensus       343 ~~~~~~~~~~~g~  355 (357)
T 3d8b_A          343 LELYENWNKTFGC  355 (357)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999999997

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=3.4e-34  Score=282.42  Aligned_cols=258  Identities=43%  Similarity=0.711  Sum_probs=200.2

Q ss_pred             hhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc-------cceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        203 LIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF-------FKEALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~-------~k~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      +++.....+...++++.|++|+|++.+++.|.+.+..|+.+++.       .+++||+||||||||++|+++|++++.+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~   82 (297)
T 3b9p_A            3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF   82 (297)
T ss_dssp             HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence            44455567777889999999999999999999999887665543       36899999999999999999999999999


Q ss_pred             EEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccc
Q psy16204        276 FNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAEN  355 (577)
Q Consensus       276 v~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  355 (577)
                      +.++++++...+.|..+..++.+|..                                                      
T Consensus        83 ~~i~~~~l~~~~~~~~~~~~~~~~~~------------------------------------------------------  108 (297)
T 3b9p_A           83 LNISAASLTSKYVGDGEKLVRALFAV------------------------------------------------------  108 (297)
T ss_dssp             EEEESTTTSSSSCSCHHHHHHHHHHH------------------------------------------------------
T ss_pred             EEeeHHHHhhcccchHHHHHHHHHHH------------------------------------------------------
Confidence            99999999999999888888888865                                                      


Q ss_pred             cCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC
Q psy16204        356 QESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS  435 (577)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~  435 (577)
                                                                             +....|+||||||+|.+...+... 
T Consensus       109 -------------------------------------------------------~~~~~~~vl~iDEid~l~~~~~~~-  132 (297)
T 3b9p_A          109 -------------------------------------------------------ARHMQPSIIFIDEVDSLLSERSSS-  132 (297)
T ss_dssp             -------------------------------------------------------HHHTCSEEEEEETGGGTSBCC----
T ss_pred             -------------------------------------------------------HHHcCCcEEEeccHHHhccccccC-
Confidence                                                                   667789999999999999876432 


Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccccc--------------------------c
Q psy16204        436 EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDV--------------------------N  489 (577)
Q Consensus       436 ~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~--------------------------~  489 (577)
                      .+....++++.||..+++..... ...+++||+|||.|+.|++++++++....                          +
T Consensus       133 ~~~~~~~~~~~ll~~l~~~~~~~-~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~  211 (297)
T 3b9p_A          133 EHEASRRLKTEFLVEFDGLPGNP-DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDT  211 (297)
T ss_dssp             --CCSHHHHHHHHHHHHHCC-------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCH
T ss_pred             cchHHHHHHHHHHHHHhcccccC-CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCH
Confidence            23445678899999999876421 22569999999999998888887653211                          1


Q ss_pred             cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy16204        490 LDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDS  569 (577)
Q Consensus       490 vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~~~~  569 (577)
                      .++..|+..+.||+++||..+|++|++.++|+....    ....+. ......|+.+||..|+..++||++.+++..|++
T Consensus       212 ~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~----~~~~~~-~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~  286 (297)
T 3b9p_A          212 EALRRLAKITDGYSGSDLTALAKDAALEPIRELNVE----QVKCLD-ISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEK  286 (297)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh----hccccc-ccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            246789999999999999999999999999874211    111111 112357999999999999999999999999999


Q ss_pred             HHHhhCC
Q psy16204        570 WMNEFGS  576 (577)
Q Consensus       570 ~~~~~~~  576 (577)
                      |.+.||+
T Consensus       287 ~~~~~~~  293 (297)
T 3b9p_A          287 WSQDYGD  293 (297)
T ss_dssp             HC-----
T ss_pred             HHHHhCC
Confidence            9999996

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=100.00  E-value=2.3e-33  Score=290.10  Aligned_cols=259  Identities=41%  Similarity=0.656  Sum_probs=199.5

Q ss_pred             chhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccc-------cceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        201 PSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF-------FKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~-------~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      ..+.+.....++..++.+.|++|+|++.+++.|.+++.+|+.+++.       .+++|||||||||||++|++||.+++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~  174 (389)
T 3vfd_A           95 SNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA  174 (389)
T ss_dssp             --CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC
Confidence            3344455667888899999999999999999999999887665543       368999999999999999999999999


Q ss_pred             eEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccc
Q psy16204        274 TFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRA  353 (577)
Q Consensus       274 ~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  353 (577)
                      +|++++|+++...|.|..+..++.+|..                                                    
T Consensus       175 ~~~~v~~~~l~~~~~g~~~~~~~~~~~~----------------------------------------------------  202 (389)
T 3vfd_A          175 TFFNISAASLTSKYVGEGEKLVRALFAV----------------------------------------------------  202 (389)
T ss_dssp             EEEEECSCCC-------CHHHHHHHHHH----------------------------------------------------
T ss_pred             cEEEeeHHHhhccccchHHHHHHHHHHH----------------------------------------------------
Confidence            9999999999999999998888888876                                                    


Q ss_pred             cccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC
Q psy16204        354 ENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS  433 (577)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~  433 (577)
                                                                               ++...|+||||||||.++..+..
T Consensus       203 ---------------------------------------------------------a~~~~~~il~iDEid~l~~~~~~  225 (389)
T 3vfd_A          203 ---------------------------------------------------------ARELQPSIIFIDQVDSLLCERRE  225 (389)
T ss_dssp             ---------------------------------------------------------HHHSSSEEEEEETGGGGC-----
T ss_pred             ---------------------------------------------------------HHhcCCeEEEEECchhhcccCCC
Confidence                                                                     67778999999999999886643


Q ss_pred             CChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccccc------------------------
Q psy16204        434 DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVN------------------------  489 (577)
Q Consensus       434 ~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~------------------------  489 (577)
                       +.+....++++.||..+++....  ...+|+||+|||.++.|+.++++||.....                        
T Consensus       226 -~~~~~~~~~~~~ll~~l~~~~~~--~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l  302 (389)
T 3vfd_A          226 -GEHDASRRLKTEFLIEFDGVQSA--GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL  302 (389)
T ss_dssp             ----CTHHHHHHHHHHHHHHHC-------CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS
T ss_pred             -ccchHHHHHHHHHHHHhhccccc--CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC
Confidence             33455678999999999986642  236799999999999999999998742111                        


Q ss_pred             --cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHHHHH
Q psy16204        490 --LDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKY  567 (577)
Q Consensus       490 --vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~~~~  567 (577)
                        .++..|+..+.||+++||..||+.|+..++|+...    ..+..+. ......|+.+||..|++.++|+++.+++..|
T Consensus       303 ~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~----~~~~~~~-~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~  377 (389)
T 3vfd_A          303 TQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKP----EQVKNMS-ASEMRNIRLSDFTESLKKIKRSVSPQTLEAY  377 (389)
T ss_dssp             CHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCC----C---CCS-SSCCCCCCHHHHHHHHHHCCCSSCHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh----hhhhccc-hhhcCCcCHHHHHHHHHHcCCCCCHHHHHHH
Confidence              14678999999999999999999999999887431    1111111 1123579999999999999999999999999


Q ss_pred             HHHHHhhCC
Q psy16204        568 DSWMNEFGS  576 (577)
Q Consensus       568 ~~~~~~~~~  576 (577)
                      ++|..+||+
T Consensus       378 ~~~~~~~g~  386 (389)
T 3vfd_A          378 IRWNKDFGD  386 (389)
T ss_dssp             HHHHHHCC-
T ss_pred             HHHHHHhCC
Confidence            999999996

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.5e-33  Score=277.31  Aligned_cols=231  Identities=36%  Similarity=0.575  Sum_probs=174.6

Q ss_pred             cCCCCCcccccCcHHHHHHHHHHHHCcCCCccc--------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF--------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~--------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      ..|+++|+||+|++++|+.|.+++.+|+.+++.        ++|+||+||||||||+||++||.+++.+++.+++.++.+
T Consensus         3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~   82 (274)
T 2x8a_A            3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN   82 (274)
T ss_dssp             ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred             CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence            357799999999999999999999888877654        368999999999999999999999999999999999999


Q ss_pred             ccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccc
Q psy16204        286 KYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSV  365 (577)
Q Consensus       286 k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  365 (577)
                      +|.|+.++.++.+|+.                                                                
T Consensus        83 ~~~~~~~~~i~~vf~~----------------------------------------------------------------   98 (274)
T 2x8a_A           83 MYVGESERAVRQVFQR----------------------------------------------------------------   98 (274)
T ss_dssp             STTHHHHHHHHHHHHH----------------------------------------------------------------
T ss_pred             hhhhHHHHHHHHHHHH----------------------------------------------------------------
Confidence            9999999999988876                                                                


Q ss_pred             cccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHH
Q psy16204        366 MVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKA  445 (577)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~  445 (577)
                                                                   ++...|+++|+||||.++..++.. ......++.+
T Consensus        99 ---------------------------------------------a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~  132 (274)
T 2x8a_A           99 ---------------------------------------------AKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVN  132 (274)
T ss_dssp             ---------------------------------------------HHHTCSEEEEEETCTTTCC----------CTTHHH
T ss_pred             ---------------------------------------------HHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHH
Confidence                                                         666789999999999998766432 2233457889


Q ss_pred             HHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc------------------------------ccccCHHHH
Q psy16204        446 ELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI------------------------------DVNLDFHKI  495 (577)
Q Consensus       446 ~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i------------------------------~~~vdl~~L  495 (577)
                      .++..|++....    ..++++|+||+|+.|+++++|+.++                              ..++|+..|
T Consensus       133 ~~l~~Lsgg~~~----~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~l  208 (274)
T 2x8a_A          133 QLLTEMDGLEAR----QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAI  208 (274)
T ss_dssp             HHHHHHHTCCST----TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHH
T ss_pred             HHHHhhhccccc----CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHH
Confidence            999999987643    6799999999999999999984322                              235688999


Q ss_pred             HHHc--CCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCHHHH
Q psy16204        496 SKML--EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDL  564 (577)
Q Consensus       496 A~~t--~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~~~~  564 (577)
                      |..+  +||||+||.++|++|++.++|+.......      ........|+.+||++|+++++||++.+++
T Consensus       209 a~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~------~~~~~~~~i~~~df~~al~~~~ps~~~~~~  273 (274)
T 2x8a_A          209 AGDLRCDCYTGADLSALVREASICALRQEMARQKS------GNEKGELKVSHKHFEEAFKKVRSSISKKDQ  273 (274)
T ss_dssp             HTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred             HHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc------cccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence            9874  59999999999999999999986422110      011123579999999999999999998875

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.97  E-value=9.5e-30  Score=248.84  Aligned_cols=235  Identities=34%  Similarity=0.484  Sum_probs=180.9

Q ss_pred             hcCCCCCcccccCcHHHHHHHHHHHHCcCCCcc--------ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPE--------FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~--------~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      ...+.+.|++|+|++++++.|.+++..++..++        ..+++||+||||||||++|+++|++++.+|+.++++++.
T Consensus         9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~   88 (285)
T 3h4m_A            9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV   88 (285)
T ss_dssp             ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred             cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence            456778999999999999999999988766543        336899999999999999999999999999999999999


Q ss_pred             cccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccc
Q psy16204        285 SKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFS  364 (577)
Q Consensus       285 ~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  364 (577)
                      ..+.|..+..++.+|..                                                               
T Consensus        89 ~~~~~~~~~~~~~~~~~---------------------------------------------------------------  105 (285)
T 3h4m_A           89 KKFIGEGASLVKDIFKL---------------------------------------------------------------  105 (285)
T ss_dssp             CCSTTHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred             HhccchHHHHHHHHHHH---------------------------------------------------------------
Confidence            99999988888888876                                                               


Q ss_pred             ccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC--hhHHHHH
Q psy16204        365 VMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS--EHEASRR  442 (577)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~--~~~~~~~  442 (577)
                                                                    +....|+||||||||.++..+.+..  .......
T Consensus       106 ----------------------------------------------~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~  139 (285)
T 3h4m_A          106 ----------------------------------------------AKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQR  139 (285)
T ss_dssp             ----------------------------------------------HHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHH
T ss_pred             ----------------------------------------------HHHcCCeEEEEECHHHhcccCccccCCccHHHHH
Confidence                                                          6777899999999999998775432  2334556


Q ss_pred             HHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhc--Ccc-------------------------cccccCHHHH
Q psy16204        443 FKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLE--GVV-------------------------IDVNLDFHKI  495 (577)
Q Consensus       443 v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allr--r~~-------------------------i~~~vdl~~L  495 (577)
                      .+..++..+++....    .+++||+|||.++.|++++++  +|.                         +..++++..+
T Consensus       140 ~l~~ll~~~~~~~~~----~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l  215 (285)
T 3h4m_A          140 TLMQLLAEMDGFDAR----GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEI  215 (285)
T ss_dssp             HHHHHHHHHHTTCSS----SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHH
T ss_pred             HHHHHHHHhhCCCCC----CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHH
Confidence            777888888876643    569999999999999888887  441                         1224478999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCC--CCCHHHHHHHHHHHHh
Q psy16204        496 SKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRK--SVTAHDLSKYDSWMNE  573 (577)
Q Consensus       496 A~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~p--sv~~~~~~~~~~~~~~  573 (577)
                      +..+.||+++||..+|+.|+..++++..                 ..|+.+||.+|+.++.+  +.....-..|..|...
T Consensus       216 ~~~~~g~~~~~i~~l~~~a~~~a~~~~~-----------------~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~  278 (285)
T 3h4m_A          216 AKMTEGCVGAELKAICTEAGMNAIRELR-----------------DYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRL  278 (285)
T ss_dssp             HHHCTTCCHHHHHHHHHHHHHHHHHTTC-----------------SSBCHHHHHHHHHHHHHHHCCC-------------
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------CcCCHHHHHHHHHHHHhccccccCCchHHHHHHHH
Confidence            9999999999999999999999987742                 36999999999998743  2444557789999999


Q ss_pred             hCCC
Q psy16204        574 FGSH  577 (577)
Q Consensus       574 ~~~~  577 (577)
                      ||+|
T Consensus       279 ~~~~  282 (285)
T 3h4m_A          279 EHHH  282 (285)
T ss_dssp             ----
T ss_pred             hccC
Confidence            9875

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.96  E-value=1.2e-29  Score=273.47  Aligned_cols=230  Identities=32%  Similarity=0.431  Sum_probs=186.1

Q ss_pred             CCCCCcccccCcHHHHHHHHHHHHCcCCCccc--------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204        215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF--------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK  286 (577)
Q Consensus       215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~--------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k  286 (577)
                      .+.+.|++|+|++.+++.|.+.+..++.+++.        +.++||+||||||||++|++||++++.+|+.++|+++.+.
T Consensus       198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~  277 (489)
T 3hu3_A          198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK  277 (489)
T ss_dssp             HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred             cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence            35678999999999999999999888666543        3689999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccccc
Q psy16204        287 YRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVM  366 (577)
Q Consensus       287 ~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  366 (577)
                      |.|+.+..++.+|..                                                                 
T Consensus       278 ~~g~~~~~~~~~f~~-----------------------------------------------------------------  292 (489)
T 3hu3_A          278 LAGESESNLRKAFEE-----------------------------------------------------------------  292 (489)
T ss_dssp             CTTHHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred             hcchhHHHHHHHHHH-----------------------------------------------------------------
Confidence            999999988888876                                                                 


Q ss_pred             ccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHH
Q psy16204        367 VDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAE  446 (577)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~  446 (577)
                                                                  +....|+||||||||.++..+... ..+...++++.
T Consensus       293 --------------------------------------------A~~~~p~iLfLDEId~l~~~~~~~-~~~~~~~~~~~  327 (489)
T 3hu3_A          293 --------------------------------------------AEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQ  327 (489)
T ss_dssp             --------------------------------------------HHHTCSEEEEEESHHHHCBCTTSC-CCHHHHHHHHH
T ss_pred             --------------------------------------------HHhcCCcEEEecchhhhccccccc-cchHHHHHHHH
Confidence                                                        777789999999999999977543 34566789999


Q ss_pred             HHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc---------------------------ccccCHHHHHHHc
Q psy16204        447 LLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI---------------------------DVNLDFHKISKML  499 (577)
Q Consensus       447 LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i---------------------------~~~vdl~~LA~~t  499 (577)
                      ||..|++...    ..+|+||+|||+++.|++++.++.++                           ..++++..++..+
T Consensus       328 LL~~ld~~~~----~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t  403 (489)
T 3hu3_A          328 LLTLMDGLKQ----RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANET  403 (489)
T ss_dssp             HHHHHHHSCT----TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTC
T ss_pred             HHHHhhcccc----CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHc
Confidence            9999998764    36799999999999988888874332                           2244789999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCC
Q psy16204        500 EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS  558 (577)
Q Consensus       500 ~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ps  558 (577)
                      .||+++||..||++|++.++++............-........|+.+||++|++.++|+
T Consensus       404 ~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps  462 (489)
T 3hu3_A          404 HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS  462 (489)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCch
Confidence            99999999999999999999986532221100000000012479999999999988754

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.96  E-value=9.6e-28  Score=258.56  Aligned_cols=212  Identities=35%  Similarity=0.509  Sum_probs=175.0

Q ss_pred             CCCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204        215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK  286 (577)
Q Consensus       215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k  286 (577)
                      .+.+.|++|+|++++++.|.+.+.. +..+        ..++++||+||||||||+||++||.+++.+|+.++++++.+.
T Consensus        10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~   88 (476)
T 2ce7_A           10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL   88 (476)
T ss_dssp             SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred             CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence            5678999999999999999998754 2222        345789999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccccc
Q psy16204        287 YRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVM  366 (577)
Q Consensus       287 ~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  366 (577)
                      +.|..+..++.+|..                                                                 
T Consensus        89 ~~g~~~~~~r~lf~~-----------------------------------------------------------------  103 (476)
T 2ce7_A           89 FVGVGAARVRDLFAQ-----------------------------------------------------------------  103 (476)
T ss_dssp             CTTHHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred             HhcccHHHHHHHHHH-----------------------------------------------------------------
Confidence            999888888888876                                                                 


Q ss_pred             ccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC--CChhHHHHHHH
Q psy16204        367 VDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFK  444 (577)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~--~~~~~~~~~v~  444 (577)
                                                                  +....||||||||||.++..++.  ++.+....+++
T Consensus       104 --------------------------------------------A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l  139 (476)
T 2ce7_A          104 --------------------------------------------AKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTL  139 (476)
T ss_dssp             --------------------------------------------HHHTCSEEEEEETGGGTCCC---------CHHHHHH
T ss_pred             --------------------------------------------HHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHH
Confidence                                                        77788999999999999988753  23345567889


Q ss_pred             HHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc---------------------------ccccCHHHHHH
Q psy16204        445 AELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI---------------------------DVNLDFHKISK  497 (577)
Q Consensus       445 ~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i---------------------------~~~vdl~~LA~  497 (577)
                      +.||..||++...    .+|+||+|||+|+.|+++++++.++                           ..++++..+|.
T Consensus       140 ~~LL~~ld~~~~~----~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~  215 (476)
T 2ce7_A          140 NQLLVEMDGFDSK----EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAK  215 (476)
T ss_dssp             HHHHHHHHHSCGG----GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHH
T ss_pred             HHHHHHHhccCCC----CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence            9999999987643    5699999999999988888873322                           23457899999


Q ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCC
Q psy16204        498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRK  557 (577)
Q Consensus       498 ~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~p  557 (577)
                      .+.||+|+||.++|++|+..+.++.                 ...|+.+||.+|+.++.+
T Consensus       216 ~t~G~sgadL~~lv~~Aal~A~~~~-----------------~~~I~~~dl~~al~~v~~  258 (476)
T 2ce7_A          216 RTPGFVGADLENLVNEAALLAAREG-----------------RDKITMKDFEEAIDRVIA  258 (476)
T ss_dssp             TCTTCCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHHHHHC-
T ss_pred             hcCCCcHHHHHHHHHHHHHHHHHcC-----------------CCeecHHHHHHHHHHHhc
Confidence            9999999999999999999887653                 246999999999998754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.96  E-value=2.4e-27  Score=229.86  Aligned_cols=215  Identities=32%  Similarity=0.467  Sum_probs=175.8

Q ss_pred             hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      ....+...|++|+|++.+++.|.+.+.+ +..+        ..++++||+||||||||++|++||.+++.+|+.++++++
T Consensus         3 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~   81 (257)
T 1lv7_A            3 TEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF   81 (257)
T ss_dssp             EECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred             CccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence            3456788999999999999999987654 3322        235789999999999999999999999999999999999


Q ss_pred             ccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccc
Q psy16204        284 TSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIF  363 (577)
Q Consensus       284 ~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  363 (577)
                      .+.+.|..+..++.+|+.                                                              
T Consensus        82 ~~~~~~~~~~~~~~~~~~--------------------------------------------------------------   99 (257)
T 1lv7_A           82 VEMFVGVGASRVRDMFEQ--------------------------------------------------------------   99 (257)
T ss_dssp             TTSCCCCCHHHHHHHHHH--------------------------------------------------------------
T ss_pred             HHHhhhhhHHHHHHHHHH--------------------------------------------------------------
Confidence            998888888888888875                                                              


Q ss_pred             cccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHHHH
Q psy16204        364 SVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEASR  441 (577)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~~~  441 (577)
                                                                     +....|+++||||||.++..++..  +......
T Consensus       100 -----------------------------------------------a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~  132 (257)
T 1lv7_A          100 -----------------------------------------------AKKAAPCIIFIDEIDAVGRQRGAGLGGGHDERE  132 (257)
T ss_dssp             -----------------------------------------------HHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHH
T ss_pred             -----------------------------------------------HHHcCCeeehhhhhhhhccCCCCCcCCCchHHH
Confidence                                                           666678999999999999876432  2234456


Q ss_pred             HHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhc--Cc-------------------------ccccccCHHH
Q psy16204        442 RFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLE--GV-------------------------VIDVNLDFHK  494 (577)
Q Consensus       442 ~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allr--r~-------------------------~i~~~vdl~~  494 (577)
                      +.++.+|..+++...    ..+++||+|||.++.|++++++  +|                         .+..++++..
T Consensus       133 ~~~~~ll~~l~~~~~----~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~  208 (257)
T 1lv7_A          133 QTLNQMLVEMDGFEG----NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAI  208 (257)
T ss_dssp             HHHHHHHHHHHTCCS----SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred             HHHHHHHHHhhCccc----CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHH
Confidence            788999999998764    3679999999999988777776  32                         2223456888


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCC
Q psy16204        495 ISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRK  557 (577)
Q Consensus       495 LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~p  557 (577)
                      ++..+.||+++||.++|++|+..+.++..                 ..|+.+||.+|+.++..
T Consensus       209 la~~~~G~~~~dl~~l~~~a~~~a~~~~~-----------------~~i~~~~~~~a~~~~~~  254 (257)
T 1lv7_A          209 IARGTPGFSGADLANLVNEAALFAARGNK-----------------RVVSMVEFEKAKDKIMM  254 (257)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHHHHHHHTTC-----------------SSBCHHHHHHHHHHHTT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHhCC-----------------CcccHHHHHHHHHHHhc
Confidence            99999999999999999999999877632                 47999999999998754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.95  E-value=8.2e-28  Score=230.97  Aligned_cols=212  Identities=30%  Similarity=0.431  Sum_probs=156.9

Q ss_pred             CCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccc
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKY  287 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~  287 (577)
                      +++.|++|+|++.+++.|.+.+.. +..+        ..++++||+||||||||++|+++|++++.+|+.++++++.+.+
T Consensus         1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~   79 (262)
T 2qz4_A            1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI   79 (262)
T ss_dssp             CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence            468899999999999999988754 2222        2346899999999999999999999999999999999999888


Q ss_pred             ccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccc
Q psy16204        288 RGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMV  367 (577)
Q Consensus       288 ~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  367 (577)
                      .|..+..++.+|..                                                                  
T Consensus        80 ~~~~~~~~~~~~~~------------------------------------------------------------------   93 (262)
T 2qz4_A           80 GGLGAARVRSLFKE------------------------------------------------------------------   93 (262)
T ss_dssp             TTHHHHHHHHHHHH------------------------------------------------------------------
T ss_pred             cChhHHHHHHHHHH------------------------------------------------------------------
Confidence            88888888877765                                                                  


Q ss_pred             cCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC---hhHHHHHHH
Q psy16204        368 DGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS---EHEASRRFK  444 (577)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~---~~~~~~~v~  444 (577)
                                                                 +....|+||||||||.++..+....   .+......+
T Consensus        94 -------------------------------------------a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l  130 (262)
T 2qz4_A           94 -------------------------------------------ARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTL  130 (262)
T ss_dssp             -------------------------------------------HHHTCSEEEEEECC-------------------CHHH
T ss_pred             -------------------------------------------HHhcCCeEEEEeCcchhhccccccccCccchhHHHHH
Confidence                                                       6667789999999999988664321   123344668


Q ss_pred             HHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhc--Cccccccc---------------------------CHHHH
Q psy16204        445 AELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLE--GVVIDVNL---------------------------DFHKI  495 (577)
Q Consensus       445 ~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allr--r~~i~~~v---------------------------dl~~L  495 (577)
                      +.||..+++...    ..+++||+|||.++.|++++++  ||.....+                           .+..+
T Consensus       131 ~~ll~~~~~~~~----~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l  206 (262)
T 2qz4_A          131 NQLLVEMDGMGT----TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRL  206 (262)
T ss_dssp             HHHHHHHHTCCT----TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHH
T ss_pred             HHHHHHhhCcCC----CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHH
Confidence            889999998764    2579999999999999999988  55211111                           23678


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCC
Q psy16204        496 SKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS  558 (577)
Q Consensus       496 A~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ps  558 (577)
                      +..+.||+++||.++|++|+..++++..                 ..|+.+||.+|++++.++
T Consensus       207 ~~~~~g~~~~~l~~l~~~a~~~a~~~~~-----------------~~i~~~d~~~a~~~~~~~  252 (262)
T 2qz4_A          207 AELTPGFSGADIANICNEAALHAAREGH-----------------TSVHTLNFEYAVERVLAG  252 (262)
T ss_dssp             HHTCTTCCHHHHHHHHHHHHTC-------------------------CCBCCHHHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CCCCHHHHHHHHHHhccC
Confidence            9999999999999999999998887642                 368899999999987543

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.93  E-value=5.2e-26  Score=246.37  Aligned_cols=212  Identities=34%  Similarity=0.477  Sum_probs=175.2

Q ss_pred             CCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccc
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKY  287 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~  287 (577)
                      +.++|++|+|+++++..|.+.+.. +..+        .+++++||+||||||||+||++||.+++.+|+.++++++.+.+
T Consensus        26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~  104 (499)
T 2dhr_A           26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF  104 (499)
T ss_dssp             CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred             CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence            778999999999999999988754 2222        2357899999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccc
Q psy16204        288 RGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMV  367 (577)
Q Consensus       288 ~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  367 (577)
                      .|..+..++.+|+.                                                                  
T Consensus       105 ~g~~~~~v~~lfq~------------------------------------------------------------------  118 (499)
T 2dhr_A          105 VGVGAARVRDLFET------------------------------------------------------------------  118 (499)
T ss_dssp             TTHHHHHHHHHTTT------------------------------------------------------------------
T ss_pred             hhhHHHHHHHHHHH------------------------------------------------------------------
Confidence            99888888888865                                                                  


Q ss_pred             cCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC--CChhHHHHHHHH
Q psy16204        368 DGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFKA  445 (577)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~--~~~~~~~~~v~~  445 (577)
                                                                 +....|||+||||||.++..++.  +..+....+.++
T Consensus       119 -------------------------------------------a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~  155 (499)
T 2dhr_A          119 -------------------------------------------AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN  155 (499)
T ss_dssp             -------------------------------------------SSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH
T ss_pred             -------------------------------------------HHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH
Confidence                                                       44456899999999999887753  123455667899


Q ss_pred             HHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc---------------------------ccccCHHHHHHH
Q psy16204        446 ELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI---------------------------DVNLDFHKISKM  498 (577)
Q Consensus       446 ~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i---------------------------~~~vdl~~LA~~  498 (577)
                      .||..|++....    ..+++||+||+|+.|+++++++.++                           ..++++..||..
T Consensus       156 ~LL~~Ldg~~~~----~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~  231 (499)
T 2dhr_A          156 QLLVEMDGFEKD----TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKR  231 (499)
T ss_dssp             HHHHHGGGCCSS----CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTT
T ss_pred             HHHHHhcccccC----ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHh
Confidence            999999987643    5689999999999988888875433                           234578999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCC
Q psy16204        499 LEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS  558 (577)
Q Consensus       499 t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~ps  558 (577)
                      +.||+|+||.++|++|+..+.++.                 ...|+.+||.+|+.++.+.
T Consensus       232 t~G~~gadL~~lv~~Aa~~A~~~~-----------------~~~It~~dl~~al~~v~~~  274 (499)
T 2dhr_A          232 TPGFVGADLENLLNEAALLAAREG-----------------RRKITMKDLEEAADRVMML  274 (499)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTTTC-----------------CSSCCSHHHHHHHHHHTTC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHhC-----------------CCccCHHHHHHHHHHHhcc
Confidence            999999999999999998886652                 1369999999999998654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.93  E-value=1.6e-25  Score=216.71  Aligned_cols=210  Identities=35%  Similarity=0.497  Sum_probs=165.7

Q ss_pred             hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      +...+.++|++|+|+++++..+++.+.. +..+        .++++++|+||||||||+|+++||..++.+++.+++.++
T Consensus         7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~   85 (254)
T 1ixz_A            7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF   85 (254)
T ss_dssp             -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence            4567889999999999999999887653 2222        234689999999999999999999999999999999888


Q ss_pred             ccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccc
Q psy16204        284 TSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIF  363 (577)
Q Consensus       284 ~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  363 (577)
                      ...+.|..+..++.+|+.                                                              
T Consensus        86 ~~~~~~~~~~~i~~~~~~--------------------------------------------------------------  103 (254)
T 1ixz_A           86 VEMFVGVGAARVRDLFET--------------------------------------------------------------  103 (254)
T ss_dssp             HHSCTTHHHHHHHHHHHH--------------------------------------------------------------
T ss_pred             HHHHhhHHHHHHHHHHHH--------------------------------------------------------------
Confidence            777777777777777765                                                              


Q ss_pred             cccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHHHH
Q psy16204        364 SVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEASR  441 (577)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~~~  441 (577)
                                                                     +....|+++||||||.++..++.+  ..+....
T Consensus       104 -----------------------------------------------~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~  136 (254)
T 1ixz_A          104 -----------------------------------------------AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE  136 (254)
T ss_dssp             -----------------------------------------------HTTSSSEEEEEETHHHHHC---------CHHHH
T ss_pred             -----------------------------------------------HHhcCCeEEEehhhhhhhcccCccccccchHHH
Confidence                                                           445568999999999998766431  2334556


Q ss_pred             HHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc---------------------------ccccCHHH
Q psy16204        442 RFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI---------------------------DVNLDFHK  494 (577)
Q Consensus       442 ~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i---------------------------~~~vdl~~  494 (577)
                      +.++.++..|++...    ...++++++||.|+.|+++++++.++                           ..++++..
T Consensus       137 ~~~~~ll~~l~g~~~----~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~  212 (254)
T 1ixz_A          137 QTLNQLLVEMDGFEK----DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLAL  212 (254)
T ss_dssp             HHHHHHHHHHHTCCT----TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred             HHHHHHHHHHhCCCC----CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHH
Confidence            788999999998764    35689999999999988888874433                           22457899


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHH
Q psy16204        495 ISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAI  552 (577)
Q Consensus       495 LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al  552 (577)
                      +|..++||+|+||.++|++|+..++++.                 ...||.+||++|+
T Consensus       213 la~~~~G~~~~dl~~~~~~a~~~a~~~~-----------------~~~I~~~dl~~a~  253 (254)
T 1ixz_A          213 LAKRTPGFVGADLENLLNEAALLAAREG-----------------RRKITMKDLEEAA  253 (254)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------CCCcCHHHHHHHh
Confidence            9999999999999999999998887653                 1369999999886

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.93  E-value=4e-28  Score=235.79  Aligned_cols=218  Identities=32%  Similarity=0.483  Sum_probs=161.7

Q ss_pred             cCCCCCcccccCcHHHHHHHHHHHHCcCCCcc--------ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPE--------FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~--------~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      ..+.+.|++|+|++.+++.|.+.+.. +..++        .++++||+||||||||++|+++|++++.+|+.++++++.+
T Consensus         4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~   82 (268)
T 2r62_A            4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE   82 (268)
T ss_dssp             CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred             cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence            45678999999999999999998754 33332        2468999999999999999999999999999999988766


Q ss_pred             ccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccc
Q psy16204        286 KYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSV  365 (577)
Q Consensus       286 k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  365 (577)
                      .+.|..+..+                                                                      
T Consensus        83 ~~~~~~~~~~----------------------------------------------------------------------   92 (268)
T 2r62_A           83 MFVGLGASRV----------------------------------------------------------------------   92 (268)
T ss_dssp             SCSSSCSSSS----------------------------------------------------------------------
T ss_pred             hhcchHHHHH----------------------------------------------------------------------
Confidence            5554432222                                                                      


Q ss_pred             cccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC---hhHHHHH
Q psy16204        366 MVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS---EHEASRR  442 (577)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~---~~~~~~~  442 (577)
                                                             +..+..+....|+||||||+|.+...+..++   .+....+
T Consensus        93 ---------------------------------------~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~  133 (268)
T 2r62_A           93 ---------------------------------------RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQ  133 (268)
T ss_dssp             ---------------------------------------STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCS
T ss_pred             ---------------------------------------HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHH
Confidence                                                   2334447777899999999999988653221   1112224


Q ss_pred             HHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCHHHH
Q psy16204        443 FKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDFHKI  495 (577)
Q Consensus       443 v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl~~L  495 (577)
                      +++.||..+++...   ...+|+||+|||.++.|+++++++.+++                           .++++..|
T Consensus       134 ~~~~ll~~l~~~~~---~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~l  210 (268)
T 2r62_A          134 TLNQLLAEMDGFGS---ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEV  210 (268)
T ss_dssp             STTTTTTTTTCSSC---SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTT
T ss_pred             HHHHHHHHhhCccc---CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHH
Confidence            56778888887653   2356899999999998888888733221                           23467888


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhCCCCCH
Q psy16204        496 SKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTA  561 (577)
Q Consensus       496 A~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~psv~~  561 (577)
                      +..+.||+|+||.++|++|+..++++.                 ...|+.+||.+|+.++.|+...
T Consensus       211 a~~~~g~~g~dl~~l~~~a~~~a~~~~-----------------~~~i~~~~~~~a~~~~~~~~~~  259 (268)
T 2r62_A          211 AKLTAGLAGADLANIINEAALLAGRNN-----------------QKEVRQQHLKEAVERGIAGLEK  259 (268)
T ss_dssp             TSSSCSSCHHHHHHHHHHHHHTTSSSC-----------------CCSCCHHHHHTSCTTCCCCCC-
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHHHHHHHHHhhcchh
Confidence            889999999999999999988775432                 2479999999999999887554

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.91  E-value=8.9e-24  Score=208.18  Aligned_cols=209  Identities=35%  Similarity=0.501  Sum_probs=164.0

Q ss_pred             hcCCCCCcccccCcHHHHHHHHHHHHCcCCCc--------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMP--------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~--------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      ...+.++|++|+|+++++..|.+.+.. +..+        .++++++|+||||||||+|+++||..++.+++.+++.++.
T Consensus        32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~  110 (278)
T 1iy2_A           32 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV  110 (278)
T ss_dssp             CCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             cCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence            344788999999999999999887643 2221        2346899999999999999999999999999999998887


Q ss_pred             cccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccc
Q psy16204        285 SKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFS  364 (577)
Q Consensus       285 ~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  364 (577)
                      ..+.+.....++.+|+.                                                               
T Consensus       111 ~~~~~~~~~~i~~~~~~---------------------------------------------------------------  127 (278)
T 1iy2_A          111 EMFVGVGAARVRDLFET---------------------------------------------------------------  127 (278)
T ss_dssp             HSTTTHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred             HHHhhHHHHHHHHHHHH---------------------------------------------------------------
Confidence            77777776777777765                                                               


Q ss_pred             ccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHHHHH
Q psy16204        365 VMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEASRR  442 (577)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~~~~  442 (577)
                                                                    +....|+++||||||.++..+...  ........
T Consensus       128 ----------------------------------------------~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~  161 (278)
T 1iy2_A          128 ----------------------------------------------AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ  161 (278)
T ss_dssp             ----------------------------------------------HHTSCSEEEEEETHHHHHCC--------CHHHHH
T ss_pred             ----------------------------------------------HHhcCCcEEehhhhHhhhcccccccCCcchHHHH
Confidence                                                          555678999999999998765431  12344567


Q ss_pred             HHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCHHHH
Q psy16204        443 FKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDFHKI  495 (577)
Q Consensus       443 v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl~~L  495 (577)
                      .++.++..+++...    ...++++++||.|+.|+++++++.+++                           .++++..+
T Consensus       162 ~~~~ll~~lsgg~~----~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~l  237 (278)
T 1iy2_A          162 TLNQLLVEMDGFEK----DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALL  237 (278)
T ss_dssp             HHHHHHHHHTTCCT----TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHH
T ss_pred             HHHHHHHHHhCCCC----CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHH
Confidence            78889999987653    356899999999999988888744332                           24478899


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHH
Q psy16204        496 SKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAI  552 (577)
Q Consensus       496 A~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al  552 (577)
                      |..++||+++||.++|++|+..+.++.                 ...|+.+||++|+
T Consensus       238 a~~~~G~~~~dl~~l~~~a~~~a~~~~-----------------~~~I~~~dl~~a~  277 (278)
T 1iy2_A          238 AKRTPGFVGADLENLLNEAALLAAREG-----------------RRKITMKDLEEAA  277 (278)
T ss_dssp             HHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------CCSBCHHHHHHHT
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCcCHHHHHHHh
Confidence            999999999999999999998887653                 1369999999886

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.88  E-value=6.3e-22  Score=212.00  Aligned_cols=344  Identities=16%  Similarity=0.186  Sum_probs=182.7

Q ss_pred             cccccCcHHHHHHHHHHHHCcCCCc---------cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-cccc
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPTIMP---------EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRG  289 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl~~~---------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~~G  289 (577)
                      .++|+|++++|+.|..++..+.+++         ..++++||+||||||||++|++||+.++.+|+.++++.+.+ +|+|
T Consensus        14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG   93 (444)
T 1g41_A           14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG   93 (444)
T ss_dssp             HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceee
Confidence            3579999999999999987653332         23478999999999999999999999999999999999988 6999


Q ss_pred             c-hHHHHHHHHHHhhhhhccccCc----------ceeeccccCCCCCccchh-------hHHHHHHHHHhhcccccCCcc
Q psy16204        290 E-SEKLVRLLFEMVSFLVGLHSNK----------TFYLVGVLNGEPTTTFAY-------NKQILQMNRRVLKGALTTAPT  351 (577)
Q Consensus       290 ~-~e~~vr~lF~~a~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~  351 (577)
                      . .+..++.+|+.|..+.-..-..          .--++..+-...++..+.       ..-...+..++..|..-....
T Consensus        94 ~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i  173 (444)
T 1g41_A           94 KEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEI  173 (444)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHSCC-----------------------------------------------------
T ss_pred             ccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEE
Confidence            6 7999999998764332100000          001111111111111111       111222333343333322222


Q ss_pred             cccccCCCCccccc-cccCCCCCCcchhhhhhhhcccCCCCcccCC--------------CCcchhhhhhhHHHHHhcCC
Q psy16204        352 RAENQESGPSIFSV-MVDGLGKGPWSMVAVVATHFTWGKKGTCQSH--------------EGHSGRINKNSLFQARCYAP  416 (577)
Q Consensus       352 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~d~~~~~~~~~~~a~~~~p  416 (577)
                      +....+..+..+-+ .++|+...-..++.|+..+++..++++....              +.|++.+.++++.++..+. 
T Consensus       174 ~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~-  252 (444)
T 1g41_A          174 EIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNG-  252 (444)
T ss_dssp             ----------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHC-
T ss_pred             EEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCC-
Confidence            22222222112221 1355544445677778777776555444332              6688999999988887776 


Q ss_pred             eEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCc----CCCceEEEEEec----CCchhhHHHhhcCccccc
Q psy16204        417 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL----YEDKIIMILAAT----NHPYQLLTLCLEGVVIDV  488 (577)
Q Consensus       417 ~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~----~~~~~VlIIatT----N~p~~L~~allrr~~i~~  488 (577)
                       |||+||||+|+...++...+...+.+++.||+.||+...+.    ++..+|++|||.    +.|.++.+.++.|+++..
T Consensus       253 -il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i  331 (444)
T 1g41_A          253 -IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRV  331 (444)
T ss_dssp             -EEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEE
T ss_pred             -eeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceee
Confidence             99999999999865444557777889999999999854321    356789999997    456667789999987742


Q ss_pred             cc------CHHHHHHH--------------cCC----CCHHHHHHHHHHHHH----------HHHHHHHhcCChhHHhhh
Q psy16204        489 NL------DFHKISKM--------------LEG----YTGSDIANLARDAAM----------MSIRRKIMGQTPAQIKEI  534 (577)
Q Consensus       489 ~v------dl~~LA~~--------------t~G----~sgsDI~~l~~~Aa~----------~airr~~~~~~~~~~~~~  534 (577)
                      .+      ++..|+..              ++|    |+...+..+++.|..          +.+++.+........-++
T Consensus       332 ~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~  411 (444)
T 1g41_A          332 ELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSA  411 (444)
T ss_dssp             ECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHG
T ss_pred             eCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhc
Confidence            22      33444421              122    667777777776543          233333322211111222


Q ss_pred             hcc-CCCCCCCHHHHHHHHHHhCCCCCHHHHHHHH
Q psy16204        535 KQE-DIDLPVTEKDFREAIARCRKSVTAHDLSKYD  568 (577)
Q Consensus       535 ~~~-~~~~~It~~df~~Al~~~~psv~~~~~~~~~  568 (577)
                      ... .....||.+++.+.+   .|.+...||++|-
T Consensus       412 ~~~~~~~~~i~~~~v~~~l---~~~~~~~dl~~~~  443 (444)
T 1g41_A          412 SDMNGQTVNIDAAYVADAL---GEVVENEDLSRFI  443 (444)
T ss_dssp             GGCTTCEEEECHHHHHHHH---TTTTTCHHHHHHH
T ss_pred             cccCCCeEEEeHHHHHHhc---CccccCCChhccc
Confidence            211 123468999998766   4667889999883

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.88  E-value=1.1e-23  Score=239.26  Aligned_cols=235  Identities=24%  Similarity=0.232  Sum_probs=188.6

Q ss_pred             ccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCccc---C
Q psy16204        319 VLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQ---S  395 (577)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  395 (577)
                      .....|.++.|....+.++++.+..+-.++..+...+..+|-|++.|+++|+||+..+.+.+.+...++.......   .
T Consensus       198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk  277 (806)
T 3cf2_A          198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK  277 (806)
T ss_dssp             SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred             CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence            3457788889999999999999998888899999999999999999999999999987666655555554443322   4


Q ss_pred             CCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchh
Q psy16204        396 HEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQ  475 (577)
Q Consensus       396 ~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~  475 (577)
                      ++|+.+..++++|..|+.+.||||||||||.|++.|++.. ++..++++++||..||++...    .+|+||||||+|+.
T Consensus       278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~----~~V~VIaaTN~~d~  352 (806)
T 3cf2_A          278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQR----AHVIVMAATNRPNS  352 (806)
T ss_dssp             CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGG----GCEEEEEECSSTTT
T ss_pred             cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC-ChHHHHHHHHHHHHHhccccc----CCEEEEEecCChhh
Confidence            5899999999999999999999999999999999886543 455678999999999999854    67999999999999


Q ss_pred             hHHHhhcCcccc---------------------------cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy16204        476 LLTLCLEGVVID---------------------------VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTP  528 (577)
Q Consensus       476 L~~allrr~~i~---------------------------~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~  528 (577)
                      |+++++|+.+|+                           .++|+..||.+|+||+|+||.+||++|++.+++|.......
T Consensus       353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~  432 (806)
T 3cf2_A          353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL  432 (806)
T ss_dssp             SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence            999999854433                           24589999999999999999999999999999997632111


Q ss_pred             hHHhhhhccCCCCCCCHHHHHHHHHHhCCC
Q psy16204        529 AQIKEIKQEDIDLPVTEKDFREAIARCRKS  558 (577)
Q Consensus       529 ~~~~~~~~~~~~~~It~~df~~Al~~~~ps  558 (577)
                      ..............|+.+||..|+..++|+
T Consensus       433 ~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps  462 (806)
T 3cf2_A          433 EDETIDAEVMNSLAVTMDDFRWALSQSNPS  462 (806)
T ss_dssp             TCCCCSHHHHHHCEECTTHHHHHHSSSSCC
T ss_pred             cccccchhhhccceeeHHHHHHHHHhCCCc
Confidence            000000000012468999999999998865

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.87  E-value=5.6e-23  Score=206.11  Aligned_cols=161  Identities=18%  Similarity=0.202  Sum_probs=116.4

Q ss_pred             ccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCC
Q psy16204        244 PEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGE  323 (577)
Q Consensus       244 ~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~  323 (577)
                      ...++++|||||||||||+||++||++++.+|++++++++.++|.|..+..++.+|..|.                    
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~--------------------   92 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA--------------------   92 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHH--------------------
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHH--------------------
Confidence            445689999999999999999999999999999999999999999999999999997621                    


Q ss_pred             CCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhh
Q psy16204        324 PTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRI  403 (577)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  403 (577)
                                                                                                      
T Consensus        93 --------------------------------------------------------------------------------   92 (293)
T 3t15_A           93 --------------------------------------------------------------------------------   92 (293)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhHHHHHhcCCeEEEEccccccccCCCCCCh-hHHHHHHHHHHHHHHhCCCC-------CcCCCceEEEEEecCCchh
Q psy16204        404 NKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSE-HEASRRFKAELLIQMDGLNS-------SLYEDKIIMILAATNHPYQ  475 (577)
Q Consensus       404 ~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~-~~~~~~v~~~LL~~mD~~~~-------~~~~~~~VlIIatTN~p~~  475 (577)
                           ..++...||||||||||++++.+++... ....+.+++.||+.||+...       ......+|+||+|||.++.
T Consensus        93 -----~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~  167 (293)
T 3t15_A           93 -----EIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST  167 (293)
T ss_dssp             -----HHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC
T ss_pred             -----HHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCccc
Confidence                 1135678999999999999986543322 22455788999999996541       1123467999999999999


Q ss_pred             hHHHhhcCcccc---------------------cccCHHHHHHHcCCCCHHHHHH
Q psy16204        476 LLTLCLEGVVID---------------------VNLDFHKISKMLEGYTGSDIAN  509 (577)
Q Consensus       476 L~~allrr~~i~---------------------~~vdl~~LA~~t~G~sgsDI~~  509 (577)
                      |+++++|+.+++                     ..++++.+++.++||+++||..
T Consensus       168 ld~al~R~~R~d~~i~~P~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~~  222 (293)
T 3t15_A          168 LYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDF  222 (293)
T ss_dssp             --CHHHHHHHEEEEEECCCHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHHH
T ss_pred             CCHHHhCCCCCceeEeCcCHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHHH
Confidence            999998744332                     2357889999999999998864

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.86  E-value=6.6e-23  Score=217.27  Aligned_cols=187  Identities=18%  Similarity=0.143  Sum_probs=125.4

Q ss_pred             CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC--CeEEEEecCccccccccchHH
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEK  293 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l~~k~~G~~e~  293 (577)
                      +...|++|+|++++++.+..++..-......++++||+||||||||++|+++|++++  .+|+.++++++.++|.|+++.
T Consensus        32 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~  111 (456)
T 2c9o_A           32 AKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV  111 (456)
T ss_dssp             BCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH
T ss_pred             hhhchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH
Confidence            445789999999999988887754322333347999999999999999999999999  999999999999999999988


Q ss_pred             HHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCC
Q psy16204        294 LVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKG  373 (577)
Q Consensus       294 ~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (577)
                       ++.+|..|..                                                                     
T Consensus       112 -~~~~f~~a~~---------------------------------------------------------------------  121 (456)
T 2c9o_A          112 -LMENFRRAIG---------------------------------------------------------------------  121 (456)
T ss_dssp             -HHHHHHHTEE---------------------------------------------------------------------
T ss_pred             -HHHHHHHHHh---------------------------------------------------------------------
Confidence             8888876210                                                                     


Q ss_pred             CcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHH--------------
Q psy16204        374 PWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEA--------------  439 (577)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~--------------  439 (577)
                                                           .+...||||||||||.+++.|+.......              
T Consensus       122 -------------------------------------~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~  164 (456)
T 2c9o_A          122 -------------------------------------LRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTA  164 (456)
T ss_dssp             -------------------------------------EEEEEEEEEEEEEEEEEEEC--------------CEEEEEEET
T ss_pred             -------------------------------------hhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhcc
Confidence                                                 14567899999999999998865421111              


Q ss_pred             ----HHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccccc------------------------cC
Q psy16204        440 ----SRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVIDVN------------------------LD  491 (577)
Q Consensus       440 ----~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~~~------------------------vd  491 (577)
                          ..++.+.++..++.....  ..+.|+|+||||+++.+++++.|..+++..                        .|
T Consensus       165 ~~~~~~~~~~~ll~~l~~~~~~--~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~d  242 (456)
T 2c9o_A          165 KGTKQLKLDPSIFESLQKERVE--AGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHD  242 (456)
T ss_dssp             TEEEEEEECHHHHHHHHHTTCC--TTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHHH
T ss_pred             ccchhHhhhHHHHHHHhhccCC--CCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHHH
Confidence                112334466666633221  335677789999999999999776555431                        15


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHH
Q psy16204        492 FHKISKMLEGYTGSDIANLARD  513 (577)
Q Consensus       492 l~~LA~~t~G~sgsDI~~l~~~  513 (577)
                      ++.++..++|  |+||.++|..
T Consensus       243 l~~~a~~t~g--gadl~~l~~~  262 (456)
T 2c9o_A          243 LDVANARPQG--GQDILSMMGQ  262 (456)
T ss_dssp             HHHTC-----------------
T ss_pred             HHHHHHhCCC--hhHHHHHHhh
Confidence            7889999999  9999999954

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.75  E-value=7.9e-18  Score=164.57  Aligned_cols=232  Identities=20%  Similarity=0.290  Sum_probs=149.2

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCC---------ccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-ccccc
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIM---------PEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRGE  290 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~---------~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~~G~  290 (577)
                      ++|+|++.+++.|..++..+..+         ...+.++||+||||||||++|+++|+.++.+++.++|+++.. .|.|.
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~   94 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK   94 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence            56999999999999988653221         123468999999999999999999999999999999998876 66664


Q ss_pred             h-HHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccC
Q psy16204        291 S-EKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDG  369 (577)
Q Consensus       291 ~-e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  369 (577)
                      . +..++.+|..+.                                                                  
T Consensus        95 ~~~~~~~~~~~~~~------------------------------------------------------------------  108 (310)
T 1ofh_A           95 EVDSIIRDLTDSAG------------------------------------------------------------------  108 (310)
T ss_dssp             STTHHHHHHHHTTT------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHhh------------------------------------------------------------------
Confidence            4 445666664300                                                                  


Q ss_pred             CCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHH
Q psy16204        370 LGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLI  449 (577)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~  449 (577)
                                                          ..+  .....++||||||||.+.......+.+.....+++.||.
T Consensus       109 ------------------------------------~~~--~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~  150 (310)
T 1ofh_A          109 ------------------------------------GAI--DAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLP  150 (310)
T ss_dssp             ------------------------------------TCH--HHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHH
T ss_pred             ------------------------------------HHH--hhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHH
Confidence                                                000  111235799999999999877555556666678899999


Q ss_pred             HHhCCCCC----cCCCceEEEEEe----cCCchhhHHHhhcCcccccc---c---CHHHHHHH--------------cCC
Q psy16204        450 QMDGLNSS----LYEDKIIMILAA----TNHPYQLLTLCLEGVVIDVN---L---DFHKISKM--------------LEG  501 (577)
Q Consensus       450 ~mD~~~~~----~~~~~~VlIIat----TN~p~~L~~allrr~~i~~~---v---dl~~LA~~--------------t~G  501 (577)
                      .+++....    .....+++||++    ++.+..+++.+..|+.....   +   ++..+.+.              ..|
T Consensus       151 ~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~  230 (310)
T 1ofh_A          151 LVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEG  230 (310)
T ss_dssp             HHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTT
T ss_pred             HhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence            99964210    112245788888    56888899999998853222   2   22333331              123


Q ss_pred             ----CCHHHHHHHHHHHHH-------HHHHHHHh---cCChhHHhhhh-ccCCCCCCCHHHHHHHHHHhC
Q psy16204        502 ----YTGSDIANLARDAAM-------MSIRRKIM---GQTPAQIKEIK-QEDIDLPVTEKDFREAIARCR  556 (577)
Q Consensus       502 ----~sgsDI~~l~~~Aa~-------~airr~~~---~~~~~~~~~~~-~~~~~~~It~~df~~Al~~~~  556 (577)
                          ++...+..+++.++.       ..+|+...   .......-... .......|+.+|+++|+....
T Consensus       231 ~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~  300 (310)
T 1ofh_A          231 VNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV  300 (310)
T ss_dssp             CEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred             CeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence                677777777776643       12233211   00000000111 111122599999999998653

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.75  E-value=3.7e-18  Score=168.32  Aligned_cols=183  Identities=16%  Similarity=0.148  Sum_probs=129.8

Q ss_pred             cccccCcHHHHHHHHHHHHCcC----------CCccccceeEEecCCCCChHHHHHHHHHHhC-------CeEEEEecCc
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPT----------IMPEFFKEALERHSHGTGKTMLAKAVATECG-------TTFFNVSSST  282 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl----------~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~-------~~fv~v~~s~  282 (577)
                      +.+|+|++.+++.|.+.+..+.          .......++||+||||||||++|+++|+.++       .+++.+++++
T Consensus        30 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  109 (309)
T 3syl_A           30 DRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD  109 (309)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred             HHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence            3489999999999998886532          2233346799999999999999999999983       4899999999


Q ss_pred             cccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcc
Q psy16204        283 LTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSI  362 (577)
Q Consensus       283 l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  362 (577)
                      +...+.|..+..++.+|..                                                             
T Consensus       110 l~~~~~g~~~~~~~~~~~~-------------------------------------------------------------  128 (309)
T 3syl_A          110 LVGQYIGHTAPKTKEVLKR-------------------------------------------------------------  128 (309)
T ss_dssp             TCCSSTTCHHHHHHHHHHH-------------------------------------------------------------
T ss_pred             hhhhcccccHHHHHHHHHh-------------------------------------------------------------
Confidence            9999999888877776654                                                             


Q ss_pred             ccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHH
Q psy16204        363 FSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRR  442 (577)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~  442 (577)
                                                                      +   .++||||||+|.++..+.+   +.....
T Consensus       129 ------------------------------------------------~---~~~vl~iDEid~l~~~~~~---~~~~~~  154 (309)
T 3syl_A          129 ------------------------------------------------A---MGGVLFIDEAYYLYRPDNE---RDYGQE  154 (309)
T ss_dssp             ------------------------------------------------H---TTSEEEEETGGGSCCCC------CCTHH
T ss_pred             ------------------------------------------------c---CCCEEEEEChhhhccCCCc---ccccHH
Confidence                                                            2   3579999999999875532   223356


Q ss_pred             HHHHHHHHHhCCCCCcCCCceEEEEEecCCchh-----hHHHhhcCcccccc-----------------------c---C
Q psy16204        443 FKAELLIQMDGLNSSLYEDKIIMILAATNHPYQ-----LLTLCLEGVVIDVN-----------------------L---D  491 (577)
Q Consensus       443 v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~-----L~~allrr~~i~~~-----------------------v---d  491 (577)
                      +++.|+..|+...      .+++||++||.+..     +++.+.+|+.....                       +   .
T Consensus       155 ~~~~Ll~~l~~~~------~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~  228 (309)
T 3syl_A          155 AIEILLQVMENNR------DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEA  228 (309)
T ss_dssp             HHHHHHHHHHHCT------TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHH
T ss_pred             HHHHHHHHHhcCC------CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHH
Confidence            7889999998754      34788899887642     34556655521110                       1   1


Q ss_pred             HHHHHHHc------CCCC-HHHHHHHHHHHHHHHHHHHH
Q psy16204        492 FHKISKML------EGYT-GSDIANLARDAAMMSIRRKI  523 (577)
Q Consensus       492 l~~LA~~t------~G~s-gsDI~~l~~~Aa~~airr~~  523 (577)
                      +..++..+      ..+. +.++.++++.|+..+..+..
T Consensus       229 ~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~  267 (309)
T 3syl_A          229 ETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLF  267 (309)
T ss_dssp             HHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            23344432      2222 67888888888887777755

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.74  E-value=1.2e-17  Score=168.59  Aligned_cols=83  Identities=19%  Similarity=0.152  Sum_probs=64.1

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC--eEEEEecCccccccccchHHHH
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT--TFFNVSSSTLTSKYRGESEKLV  295 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~--~fv~v~~s~l~~k~~G~~e~~v  295 (577)
                      ..|++++|++.+++.+...+..-.......+++||+||||||||++|+++|++++.  +|+.+++..+...+.+..+. +
T Consensus        41 ~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~  119 (368)
T 3uk6_A           41 QASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA-L  119 (368)
T ss_dssp             SEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHH-H
T ss_pred             cchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHH-H
Confidence            34999999999998865554321111222478999999999999999999999985  89999999998888887764 5


Q ss_pred             HHHHHH
Q psy16204        296 RLLFEM  301 (577)
Q Consensus       296 r~lF~~  301 (577)
                      ...|..
T Consensus       120 ~~~~~~  125 (368)
T 3uk6_A          120 TQAFRR  125 (368)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.73  E-value=7.8e-17  Score=161.42  Aligned_cols=76  Identities=16%  Similarity=0.163  Sum_probs=60.9

Q ss_pred             HhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      +..|..++.+..|++++|++.+++.|...+.........+.++||+||||||||++|+++|+.++.+|+.++|..+
T Consensus        16 ~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~   91 (338)
T 3pfi_A           16 DETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI   91 (338)
T ss_dssp             -------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred             hhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhc
Confidence            3466677888899999999999999999987654334455789999999999999999999999999999999765

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.72  E-value=3.3e-16  Score=153.22  Aligned_cols=178  Identities=17%  Similarity=0.216  Sum_probs=119.8

Q ss_pred             cccccCcHHHHHHHHHH---HHCcCC--CccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccchH--
Q psy16204        220 WNKVAGLTEAKAILQEA---MVLPTI--MPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESE--  292 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~---l~~pl~--~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e--  292 (577)
                      ...++|+..+.+.+...   +...+.  ......++||+||||||||++|+++|++++.+|+.+++++.   +.|..+  
T Consensus        32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~  108 (272)
T 1d2n_A           32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETA  108 (272)
T ss_dssp             TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHH
T ss_pred             hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHH
Confidence            35678887776655553   111111  12334789999999999999999999999999999998763   333322  


Q ss_pred             --HHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCC
Q psy16204        293 --KLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGL  370 (577)
Q Consensus       293 --~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (577)
                        ..++.+|+.                                                                     
T Consensus       109 ~~~~~~~~~~~---------------------------------------------------------------------  119 (272)
T 1d2n_A          109 KCQAMKKIFDD---------------------------------------------------------------------  119 (272)
T ss_dssp             HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred             HHHHHHHHHHH---------------------------------------------------------------------
Confidence              333444432                                                                     


Q ss_pred             CCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHH
Q psy16204        371 GKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQ  450 (577)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~  450 (577)
                                                              +....++||||||||.++..+..+.  .....+++.|+..
T Consensus       120 ----------------------------------------~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~l~~L~~~  157 (272)
T 1d2n_A          120 ----------------------------------------AYKSQLSCVVVDDIERLLDYVPIGP--RFSNLVLQALLVL  157 (272)
T ss_dssp             ----------------------------------------HHTSSEEEEEECCHHHHTTCBTTTT--BCCHHHHHHHHHH
T ss_pred             ----------------------------------------HHhcCCcEEEEEChhhhhccCCCCh--hHHHHHHHHHHHH
Confidence                                                    5556689999999999977653222  2234566777777


Q ss_pred             HhCCCCCcCCCceEEEEEecCCchhhHH-HhhcCcccccc-------cCHHHHHHHcCCCCHHHHHHHHHHH
Q psy16204        451 MDGLNSSLYEDKIIMILAATNHPYQLLT-LCLEGVVIDVN-------LDFHKISKMLEGYTGSDIANLARDA  514 (577)
Q Consensus       451 mD~~~~~~~~~~~VlIIatTN~p~~L~~-allrr~~i~~~-------vdl~~LA~~t~G~sgsDI~~l~~~A  514 (577)
                      +++...   ...+++||+|||.++.|++ .+.++|.....       -++..+.....+++..++..+++.+
T Consensus       158 ~~~~~~---~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~  226 (272)
T 1d2n_A          158 LKKAPP---QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQV  226 (272)
T ss_dssp             TTCCCS---TTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hcCccC---CCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence            776542   2467999999999999888 56666532211       2456666666788888887777654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.72  E-value=2.2e-18  Score=187.48  Aligned_cols=69  Identities=22%  Similarity=0.245  Sum_probs=54.9

Q ss_pred             CCCCcccccCcHHHHHHHHHHHHCcCCCccc-cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEF-FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~-~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      ....+++++|+++++..+.+.+.+....... ...+||+||||||||+||++||..++.+|..+++..+.
T Consensus        76 ~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~  145 (543)
T 3m6a_A           76 GRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR  145 (543)
T ss_dssp             GGTHHHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence            3456678999999999998877653322222 34799999999999999999999999999999998653

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.70  E-value=7.3e-17  Score=179.96  Aligned_cols=182  Identities=18%  Similarity=0.166  Sum_probs=125.8

Q ss_pred             CCCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHC---cCCCcccc-ceeEEecCCC
Q psy16204        182 DGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVL---PTIMPEFF-KEALERHSHG  257 (577)
Q Consensus       182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~---pl~~~~~~-k~ILL~GPpG  257 (577)
                      ..+..+++.+.+...++++...+...+...+........++|+|++.+++.|..++..   .+..+..+ .++||+||||
T Consensus       419 ~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~G  498 (758)
T 1r6b_X          419 KTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTG  498 (758)
T ss_dssp             CSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTT
T ss_pred             CccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCC
Confidence            4566778888887777776544322222222222223456899999999999888754   23333333 4699999999


Q ss_pred             CChHHHHHHHHHHhCCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHH
Q psy16204        258 TGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQM  337 (577)
Q Consensus       258 tGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (577)
                      ||||++|+++|+.++.+|+.++|+++.+++.                            +..+.|.++++.|+.      
T Consensus       499 tGKT~la~~la~~l~~~~~~i~~s~~~~~~~----------------------------~~~l~g~~~g~~g~~------  544 (758)
T 1r6b_X          499 VGKTEVTVQLSKALGIELLRFDMSEYMERHT----------------------------VSRLIGAPPGYVGFD------  544 (758)
T ss_dssp             SSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC----------------------------CSSSCCCCSCSHHHH------
T ss_pred             CcHHHHHHHHHHHhcCCEEEEechhhcchhh----------------------------HhhhcCCCCCCcCcc------
Confidence            9999999999999999999999998876421                            345556666666651      


Q ss_pred             HHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCe
Q psy16204        338 NRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPS  417 (577)
Q Consensus       338 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~  417 (577)
                                                                                    .++.+.+.   ++...++
T Consensus       545 --------------------------------------------------------------~~~~l~~~---~~~~~~~  559 (758)
T 1r6b_X          545 --------------------------------------------------------------QGGLLTDA---VIKHPHA  559 (758)
T ss_dssp             --------------------------------------------------------------HTTHHHHH---HHHCSSE
T ss_pred             --------------------------------------------------------------ccchHHHH---HHhCCCc
Confidence                                                                          11222222   4456679


Q ss_pred             EEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC-----CCcCCCceEEEEEecCCch
Q psy16204        418 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHPY  474 (577)
Q Consensus       418 IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~-----~~~~~~~~VlIIatTN~p~  474 (577)
                      ||||||||++.+            .+++.||+.||.-.     +...+..+++||+|||.+.
T Consensus       560 vl~lDEi~~~~~------------~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~  609 (758)
T 1r6b_X          560 VLLLDEIEKAHP------------DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGV  609 (758)
T ss_dssp             EEEEETGGGSCH------------HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSC
T ss_pred             EEEEeCccccCH------------HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcch
Confidence            999999999865            68999999998421     1122346789999999854

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.69  E-value=7.1e-17  Score=164.96  Aligned_cols=80  Identities=29%  Similarity=0.316  Sum_probs=63.2

Q ss_pred             cccCcHHHHHHHHHHHHCcC----------CCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc-cccc
Q psy16204        222 KVAGLTEAKAILQEAMVLPT----------IMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK-YRGE  290 (577)
Q Consensus       222 dIiG~~~ak~~L~e~l~~pl----------~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k-~~G~  290 (577)
                      .|+|++.+++.|..++....          .......++||+||||||||++|++||+.++.+|+.++|+++... |.|.
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~   95 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE   95 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence            48999999999999884211          111234689999999999999999999999999999999988753 7776


Q ss_pred             h-HHHHHHHHHH
Q psy16204        291 S-EKLVRLLFEM  301 (577)
Q Consensus       291 ~-e~~vr~lF~~  301 (577)
                      + +..++.+|..
T Consensus        96 ~~~~~~~~~~~~  107 (363)
T 3hws_A           96 DVENIIQKLLQK  107 (363)
T ss_dssp             HHTHHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            5 5556666654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.65  E-value=1.1e-15  Score=171.16  Aligned_cols=106  Identities=26%  Similarity=0.212  Sum_probs=72.5

Q ss_pred             CCChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCc---CCCccccc-eeEEecCCCC
Q psy16204        183 GVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLP---TIMPEFFK-EALERHSHGT  258 (577)
Q Consensus       183 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~p---l~~~~~~k-~ILL~GPpGt  258 (577)
                      .+..+++...+...+|++...+...+...+........++|+|++.+++.|.+++...   +..+..+. ++||+|||||
T Consensus       453 ~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~Gt  532 (758)
T 3pxi_A          453 EVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGV  532 (758)
T ss_dssp             -CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTS
T ss_pred             ccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCC
Confidence            4556777777877778776554443333333333334578999999999999988643   22333333 6999999999


Q ss_pred             ChHHHHHHHHHHh---CCeEEEEecCccccccc
Q psy16204        259 GKTMLAKAVATEC---GTTFFNVSSSTLTSKYR  288 (577)
Q Consensus       259 GKT~LAkaLA~el---~~~fv~v~~s~l~~k~~  288 (577)
                      |||++|++||+.+   +.+|++++|+++.+.+.
T Consensus       533 GKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~  565 (758)
T 3pxi_A          533 GKTELARALAESIFGDEESMIRIDMSEYMEKHS  565 (758)
T ss_dssp             SHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred             CHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence            9999999999998   68999999999877654

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.64  E-value=1.3e-15  Score=150.82  Aligned_cols=71  Identities=21%  Similarity=0.168  Sum_probs=58.4

Q ss_pred             hcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      +++.+..|++++|.+.+++.|...+...........++||+||||||||++|+++|++++.+|+.++|+.+
T Consensus         4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~   74 (324)
T 1hqc_A            4 LALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI   74 (324)
T ss_dssp             -CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred             cccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence            34566789999999999999998885422112234689999999999999999999999999999999865

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.61  E-value=8.9e-16  Score=157.29  Aligned_cols=79  Identities=25%  Similarity=0.286  Sum_probs=55.9

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCc-------------------------cccceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMP-------------------------EFFKEALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~-------------------------~~~k~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      +.|+|++.+++.|..++..+..+.                         ....++||+||||||||++|++||+.++.+|
T Consensus        21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~  100 (376)
T 1um8_A           21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI  100 (376)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            468999999999998884222111                         1235799999999999999999999999999


Q ss_pred             EEEecCccc-cccccch-HHHHHHHH
Q psy16204        276 FNVSSSTLT-SKYRGES-EKLVRLLF  299 (577)
Q Consensus       276 v~v~~s~l~-~k~~G~~-e~~vr~lF  299 (577)
                      +.++|..+. ..|.|.. +..+..+|
T Consensus       101 ~~~~~~~~~~~~~~g~~~~~~~~~~~  126 (376)
T 1um8_A          101 AISDATSLTEAGYVGEDVENILTRLL  126 (376)
T ss_dssp             EEEEGGGCC--------CTHHHHHHH
T ss_pred             EEecchhhhhcCcCCccHHHHHHHHH
Confidence            999998875 3455543 33344444

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.61  E-value=3.9e-14  Score=129.31  Aligned_cols=69  Identities=22%  Similarity=0.176  Sum_probs=57.1

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCcc
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTL  283 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l  283 (577)
                      .|..++++..+++++|.+.+++.|.+.+...     ...++||+||||||||++|+++++++     ...++.++++..
T Consensus         6 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~   79 (226)
T 2chg_A            6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERK-----NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE   79 (226)
T ss_dssp             CHHHHTSCSSGGGCCSCHHHHHHHHHHHHTT-----CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred             hHHHhcCCCCHHHHcCcHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence            4666788889999999999999999998653     12359999999999999999999986     356788887654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.60  E-value=3.9e-15  Score=146.49  Aligned_cols=67  Identities=22%  Similarity=0.211  Sum_probs=54.0

Q ss_pred             CcccccCcHHHHHHHHHHHHCc---CCCcccc-ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcccc
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLP---TIMPEFF-KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLTS  285 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~p---l~~~~~~-k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~~  285 (577)
                      ..++|+|++.+++.|...+...   +..+..+ ..+||+||||||||++|++||+.+   +.+|+.++|+.+..
T Consensus        15 l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~   88 (311)
T 4fcw_A           15 LHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME   88 (311)
T ss_dssp             HHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred             HhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence            3467899999999999988553   2333333 479999999999999999999998   56799999987754

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.60  E-value=2.6e-15  Score=134.11  Aligned_cols=86  Identities=20%  Similarity=0.286  Sum_probs=64.0

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVS  279 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~  279 (577)
                      ++.....+..+++++|.++.++.+.+.+..     ....++||+||||||||++|+++++.+          +.+++.++
T Consensus        11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (195)
T 1jbk_A           11 DLTERAEQGKLDPVIGRDEEIRRTIQVLQR-----RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD   85 (195)
T ss_dssp             EHHHHHHTTCSCCCCSCHHHHHHHHHHHTS-----SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred             HHHHHHhhccccccccchHHHHHHHHHHhc-----CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence            444445567899999999999999998854     224679999999999999999999997          78888888


Q ss_pred             cCcccc--ccccchHHHHHHHHH
Q psy16204        280 SSTLTS--KYRGESEKLVRLLFE  300 (577)
Q Consensus       280 ~s~l~~--k~~G~~e~~vr~lF~  300 (577)
                      +..+..  .+.|..+..++.++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~  108 (195)
T 1jbk_A           86 MGALVAGAKYRGEFEERLKGVLN  108 (195)
T ss_dssp             HHHHHTTTCSHHHHHHHHHHHHH
T ss_pred             HHHHhccCCccccHHHHHHHHHH
Confidence            876652  334444444444443

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.60  E-value=5.8e-15  Score=167.82  Aligned_cols=103  Identities=24%  Similarity=0.202  Sum_probs=74.1

Q ss_pred             CChhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCc---CCCcccc-ceeEEecCCCCC
Q psy16204        184 VFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLP---TIMPEFF-KEALERHSHGTG  259 (577)
Q Consensus       184 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~p---l~~~~~~-k~ILL~GPpGtG  259 (577)
                      +..+++...+...+|++...+...+...+.+.+...+++|+|++.+++.|...+...   +..+..+ .++||+||||||
T Consensus       521 v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtG  600 (854)
T 1qvr_A          521 VTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVG  600 (854)
T ss_dssp             ECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSS
T ss_pred             cCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCC
Confidence            456777777777777654433222222222223334678999999999999988542   2333333 479999999999


Q ss_pred             hHHHHHHHHHHh---CCeEEEEecCccccc
Q psy16204        260 KTMLAKAVATEC---GTTFFNVSSSTLTSK  286 (577)
Q Consensus       260 KT~LAkaLA~el---~~~fv~v~~s~l~~k  286 (577)
                      ||++|++||..+   +.+|+.++|+++.+.
T Consensus       601 KT~lA~~la~~~~~~~~~~i~i~~~~~~~~  630 (854)
T 1qvr_A          601 KTELAKTLAATLFDTEEAMIRIDMTEYMEK  630 (854)
T ss_dssp             HHHHHHHHHHHHHSSGGGEEEECTTTCCSS
T ss_pred             HHHHHHHHHHHhcCCCCcEEEEechhccch
Confidence            999999999999   789999999988654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.58  E-value=1.8e-15  Score=135.77  Aligned_cols=67  Identities=15%  Similarity=0.149  Sum_probs=54.8

Q ss_pred             hcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEecCc
Q psy16204        213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVSSST  282 (577)
Q Consensus       213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~~s~  282 (577)
                      ....+..+++++|.+.+.+.+.+.+..     ....++||+||||||||++|+++++++          +.+++.+++..
T Consensus        14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~-----~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (187)
T 2p65_A           14 ALARAGKLDPVIGRDTEIRRAIQILSR-----RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSS   88 (187)
T ss_dssp             HHHHTTCSCCCCSCHHHHHHHHHHHTS-----SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHH
T ss_pred             HHHhccccchhhcchHHHHHHHHHHhC-----CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHH
Confidence            344456789999999999999998844     223589999999999999999999997          77888888766


Q ss_pred             cc
Q psy16204        283 LT  284 (577)
Q Consensus       283 l~  284 (577)
                      +.
T Consensus        89 ~~   90 (187)
T 2p65_A           89 LI   90 (187)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=99.57  E-value=4.1e-14  Score=141.12  Aligned_cols=71  Identities=20%  Similarity=0.135  Sum_probs=62.6

Q ss_pred             hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      ..|..++.+.++++++|++.+++.|.+.+..    ...+..+|++||||||||++|+++|++++.+++++++++.
T Consensus        14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~----~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~   84 (324)
T 3u61_B           14 HILEQKYRPSTIDECILPAFDKETFKSITSK----GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC   84 (324)
T ss_dssp             SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT----TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC
T ss_pred             chHHHhhCCCCHHHHhCcHHHHHHHHHHHHc----CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc
Confidence            4688889999999999999999999999863    2344678899999999999999999999999999998764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.56  E-value=7.4e-14  Score=128.29  Aligned_cols=61  Identities=18%  Similarity=0.222  Sum_probs=50.7

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .+..++.+..+++++|.+.+++.|...+...    ..+..+||+||+|+|||++|+++++.++..
T Consensus        12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~   72 (250)
T 1njg_A           12 VLARKWRPQTFADVVGQEHVLTALANGLSLG----RIHHAYLFSGTRGVGKTSIARLLAKGLNCE   72 (250)
T ss_dssp             CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHT----CCCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred             HHhhccCCccHHHHhCcHHHHHHHHHHHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            4556777888999999999999999998643    223579999999999999999999988643

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.56  E-value=2e-14  Score=153.33  Aligned_cols=80  Identities=20%  Similarity=0.154  Sum_probs=64.5

Q ss_pred             hhhhcCCCCCcccccCcHHHH---HHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204        210 DILQNNPNVQWNKVAGLTEAK---AILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK  286 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak---~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k  286 (577)
                      ++.....+..+++++|++.++   ..|...+....     ..++|||||||||||++|++||+.++.+|+.+++...   
T Consensus        15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~-----~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~---   86 (447)
T 3pvs_A           15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS---   86 (447)
T ss_dssp             CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTC-----CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC---
T ss_pred             ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCC-----CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC---
Confidence            566677788999999999999   78888885432     2689999999999999999999999999999998643   


Q ss_pred             cccchHHHHHHHHHH
Q psy16204        287 YRGESEKLVRLLFEM  301 (577)
Q Consensus       287 ~~G~~e~~vr~lF~~  301 (577)
                          ....++.+|..
T Consensus        87 ----~~~~ir~~~~~   97 (447)
T 3pvs_A           87 ----GVKEIREAIER   97 (447)
T ss_dssp             ----CHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHH
Confidence                23456666654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.52  E-value=4.5e-13  Score=133.96  Aligned_cols=65  Identities=20%  Similarity=0.040  Sum_probs=53.8

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCccc
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSSTLT  284 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~l~  284 (577)
                      ..++++|.+..++.|...+...+. .....+++|+||||||||++|+++++.+         +.++++++|....
T Consensus        17 ~p~~~~gr~~~~~~l~~~l~~~~~-~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   90 (387)
T 2v1u_A           17 VPDVLPHREAELRRLAEVLAPALR-GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRE   90 (387)
T ss_dssp             CCSCCTTCHHHHHHHHHTTGGGTS-SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCC
Confidence            348899999999999998744222 2344689999999999999999999998         8899999998653

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.50  E-value=1.1e-12  Score=133.38  Aligned_cols=72  Identities=24%  Similarity=0.203  Sum_probs=56.2

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      +........+++++|++.+++.|...+.....+.+.+..++|+||||+|||+||++||.++++++...++..
T Consensus        15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~   86 (334)
T 1in4_A           15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV   86 (334)
T ss_dssp             --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred             HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence            344556678999999999999998887543222334467999999999999999999999999887776653

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.50  E-value=9.2e-14  Score=149.64  Aligned_cols=78  Identities=22%  Similarity=0.195  Sum_probs=65.8

Q ss_pred             HhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcC-------CC-----ccccceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        208 EKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPT-------IM-----PEFFKEALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       208 ~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl-------~~-----~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      ...|..++.+..+++|+|++.+++.|.+.+....       ..     ...++++||+||||||||++|+++|++++.++
T Consensus        26 ~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~  105 (516)
T 1sxj_A           26 DKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI  105 (516)
T ss_dssp             CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred             CCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence            3478889999999999999999999999986411       00     01347899999999999999999999999999


Q ss_pred             EEEecCcccc
Q psy16204        276 FNVSSSTLTS  285 (577)
Q Consensus       276 v~v~~s~l~~  285 (577)
                      ++++++++..
T Consensus       106 i~in~s~~~~  115 (516)
T 1sxj_A          106 LEQNASDVRS  115 (516)
T ss_dssp             EEECTTSCCC
T ss_pred             EEEeCCCcch
Confidence            9999998754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.49  E-value=5.1e-13  Score=133.14  Aligned_cols=70  Identities=17%  Similarity=0.200  Sum_probs=57.5

Q ss_pred             hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC------CeEEEEecCc
Q psy16204        209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG------TTFFNVSSST  282 (577)
Q Consensus       209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~------~~fv~v~~s~  282 (577)
                      .+|..++.+..|++|+|++++++.|...+...    . +.++||+||||||||++|+++|+.++      ..++.+++++
T Consensus        25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~----~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~   99 (353)
T 1sxj_D           25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA----N-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD   99 (353)
T ss_dssp             -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT----T-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred             ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC----C-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence            46778888999999999999999999987542    1 23599999999999999999999865      3578888876


Q ss_pred             c
Q psy16204        283 L  283 (577)
Q Consensus       283 l  283 (577)
                      .
T Consensus       100 ~  100 (353)
T 1sxj_D          100 E  100 (353)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.48  E-value=1.5e-12  Score=127.88  Aligned_cols=72  Identities=22%  Similarity=0.219  Sum_probs=58.9

Q ss_pred             HHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC-----CeEEEEec
Q psy16204        206 TLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG-----TTFFNVSS  280 (577)
Q Consensus       206 ~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~-----~~fv~v~~  280 (577)
                      ..+.+|..++.+..|++++|++.+++.|...+...     ...++||+||||||||++|+++|+.+.     ..++.+++
T Consensus        10 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~   84 (327)
T 1iqp_A           10 VLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA   84 (327)
T ss_dssp             HTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-----CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred             ccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcC-----CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence            33457888899999999999999999999988643     123599999999999999999999964     34777776


Q ss_pred             Cc
Q psy16204        281 ST  282 (577)
Q Consensus       281 s~  282 (577)
                      ++
T Consensus        85 ~~   86 (327)
T 1iqp_A           85 SD   86 (327)
T ss_dssp             TC
T ss_pred             cc
Confidence            64

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.47  E-value=6.6e-13  Score=148.18  Aligned_cols=81  Identities=21%  Similarity=0.255  Sum_probs=63.0

Q ss_pred             CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEecCccc-
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVSSSTLT-  284 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~~s~l~-  284 (577)
                      ....+++++|.+..++.+.+.+...     ...++||+||||||||++|+++|..+          ++.++.+++..+. 
T Consensus       181 ~~~~~d~~iGr~~~i~~l~~~l~~~-----~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~  255 (758)
T 1r6b_X          181 RVGGIDPLIGREKELERAIQVLCRR-----RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA  255 (758)
T ss_dssp             HTTCSCCCCSCHHHHHHHHHHHTSS-----SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C
T ss_pred             hcCCCCCccCCHHHHHHHHHHHhcc-----CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc
Confidence            3457899999999999999988542     34689999999999999999999987          6678888877765 


Q ss_pred             -cccccchHHHHHHHHHH
Q psy16204        285 -SKYRGESEKLVRLLFEM  301 (577)
Q Consensus       285 -~k~~G~~e~~vr~lF~~  301 (577)
                       .+|.|..+..++.+|..
T Consensus       256 ~~~~~g~~e~~l~~~~~~  273 (758)
T 1r6b_X          256 GTKYRGDFEKRFKALLKQ  273 (758)
T ss_dssp             CCCCSSCHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHH
Confidence             35777777777777654

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.46  E-value=2.3e-13  Score=133.13  Aligned_cols=69  Identities=22%  Similarity=0.196  Sum_probs=56.1

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCcc
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTL  283 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l  283 (577)
                      +|..++.+..|++++|++.+++.|...+..    ... .++||+||||||||++|+++|+.+     +.+++.+++++.
T Consensus         6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~   79 (319)
T 2chq_A            6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER----KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE   79 (319)
T ss_dssp             CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT----TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST
T ss_pred             cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC----CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc
Confidence            567788889999999999999999887743    222 359999999999999999999996     345777777653

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.46  E-value=1.6e-13  Score=146.42  Aligned_cols=84  Identities=19%  Similarity=0.263  Sum_probs=59.6

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVS  279 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~  279 (577)
                      ++.+...+..+++|+|++..++.+.+.+..+     ...++||+||||||||++|++||..+          +.+|+.++
T Consensus       169 ~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~-----~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~  243 (468)
T 3pxg_A          169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRR-----TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD  243 (468)
T ss_dssp             BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCS-----SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred             HHHHHHhcCCCCCccCcHHHHHHHHHHHhcc-----CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence            4445566678999999999999999988652     23589999999999999999999997          67888888


Q ss_pred             cCccccccccchHHHHHHHHHH
Q psy16204        280 SSTLTSKYRGESEKLVRLLFEM  301 (577)
Q Consensus       280 ~s~l~~k~~G~~e~~vr~lF~~  301 (577)
                      ++   .+|.|+.+..++.+|..
T Consensus       244 ~~---~~~~g~~e~~~~~~~~~  262 (468)
T 3pxg_A          244 MG---TKYRGEFEDRLKKVMDE  262 (468)
T ss_dssp             ------------CTTHHHHHHH
T ss_pred             CC---ccccchHHHHHHHHHHH
Confidence            77   55666666666666654

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.45  E-value=3.4e-13  Score=131.08  Aligned_cols=64  Identities=17%  Similarity=0.174  Sum_probs=47.2

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccc
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLT  284 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~  284 (577)
                      .+|++++|++.+...+.+.+......   ..++||+||||||||++|++|++.+.   .+|+.++|+.+.
T Consensus         3 ~~f~~~ig~~~~~~~~~~~~~~~~~~---~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~   69 (265)
T 2bjv_A            3 EYKDNLLGEANSFLEVLEQVSHLAPL---DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN   69 (265)
T ss_dssp             -------CCCHHHHHHHHHHHHHTTS---CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC
T ss_pred             cccccceeCCHHHHHHHHHHHHHhCC---CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC
Confidence            36889999999999888776542222   26899999999999999999999875   689999999763

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.44  E-value=3.4e-13  Score=136.22  Aligned_cols=61  Identities=18%  Similarity=0.262  Sum_probs=49.7

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCccc
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLT  284 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~  284 (577)
                      ++|+|.+.+.+.+.+.+..-.   ....+|||+||||||||++|++|+..+   +.+|+.++|+.+.
T Consensus         2 ~~iig~s~~~~~~~~~~~~~a---~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~   65 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMVA---PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN   65 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHC---STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred             CCcEECCHHHHHHHHHHHHHh---CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence            468999999998888875432   123589999999999999999999976   5799999999764

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.44  E-value=7.6e-13  Score=140.30  Aligned_cols=64  Identities=17%  Similarity=0.249  Sum_probs=50.0

Q ss_pred             CCCCccccc-C--cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCcc
Q psy16204        216 PNVQWNKVA-G--LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTL  283 (577)
Q Consensus       216 ~~v~~~dIi-G--~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l  283 (577)
                      +..+|++++ |  ...+...+..+...|-   . +.++|||||||||||+||++|++++     +.+++++++.++
T Consensus       100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~~---~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~  171 (440)
T 2z4s_A          100 PDYTFENFVVGPGNSFAYHAALEVAKHPG---R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF  171 (440)
T ss_dssp             TTCSGGGCCCCTTTHHHHHHHHHHHHSTT---S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred             CCCChhhcCCCCchHHHHHHHHHHHhCCC---C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence            345788887 5  4556666666665542   2 6789999999999999999999998     888999988754

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.43  E-value=2.8e-12  Score=127.88  Aligned_cols=55  Identities=24%  Similarity=0.263  Sum_probs=44.2

Q ss_pred             cCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      ..++..|++|+|++.+++.+...+..+     ...++||+||||||||++|+++|+.++.
T Consensus        17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~-----~~~~vLl~G~~GtGKT~la~~la~~~~~   71 (350)
T 1g8p_A           17 TRPVFPFSAIVGQEDMKLALLLTAVDP-----GIGGVLVFGDRGTGKSTAVRALAALLPE   71 (350)
T ss_dssp             -CCCCCGGGSCSCHHHHHHHHHHHHCG-----GGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CCCCCCchhccChHHHHHHHHHHhhCC-----CCceEEEECCCCccHHHHHHHHHHhCcc
Confidence            345678999999999988876665433     1246999999999999999999999873

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.43  E-value=6.2e-12  Score=126.36  Aligned_cols=64  Identities=14%  Similarity=0.051  Sum_probs=51.3

Q ss_pred             cccccCcHHHHHHHHHHHHCcCCCcc-ccceeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCcc
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPTIMPE-FFKEALERHSHGTGKTMLAKAVATEC----GTTFFNVSSSTL  283 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl~~~~-~~k~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~l  283 (577)
                      .++++|.+..++.|...+...+.... .+..++|+||||||||+++++++..+    +..+++++|...
T Consensus        16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~   84 (389)
T 1fnn_A           16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY   84 (389)
T ss_dssp             CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred             CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence            47899999999999998854222111 12379999999999999999999998    678999998765

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.42  E-value=3.5e-12  Score=128.04  Aligned_cols=60  Identities=18%  Similarity=0.241  Sum_probs=50.6

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      +..++.+..|++++|++.+++.|...+...    .....+||+||+|||||++|+++|+.+++.
T Consensus         6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~----~~~~~~ll~G~~G~GKT~la~~la~~l~~~   65 (373)
T 1jr3_A            6 LARKWRPQTFADVVGQEHVLTALANGLSLG----RIHHAYLFSGTRGVGKTSIARLLAKGLNCE   65 (373)
T ss_dssp             HHHHTCCCSTTTSCSCHHHHHHHHHHHHHT----CCCSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred             HHHhhCCCchhhccCcHHHHHHHHHHHHhC----CCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            455677889999999999999999998542    334578999999999999999999998753

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.42  E-value=7e-13  Score=132.74  Aligned_cols=65  Identities=25%  Similarity=0.307  Sum_probs=52.2

Q ss_pred             CCCCccccc---CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        216 PNVQWNKVA---GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       216 ~~v~~~dIi---G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      +..+|++++   +...+...+..++..|-   ..+.++|||||||||||+||+++++.+   +.+++++++.++
T Consensus         6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~~---~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~   76 (324)
T 1l8q_A            6 PKYTLENFIVGEGNRLAYEVVKEALENLG---SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF   76 (324)
T ss_dssp             TTCCSSSCCCCTTTHHHHHHHHHHHHTTT---TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCCcccCCCCCcHHHHHHHHHHHHhCcC---CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence            445788887   45667777777776652   235689999999999999999999999   899999998765

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.41  E-value=2.8e-13  Score=121.70  Aligned_cols=60  Identities=15%  Similarity=0.035  Sum_probs=47.2

Q ss_pred             cccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcccc
Q psy16204        222 KVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLTS  285 (577)
Q Consensus       222 dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~~  285 (577)
                      +|+|.+.+.+.+.+.+..-.   .....|||+||||||||++|++|+..+   +.+|+ ++|+.+.+
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a---~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~   64 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLS---ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDN   64 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHT---TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTT
T ss_pred             CceeCCHHHHHHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCc
Confidence            67899999998888774321   122579999999999999999999987   67999 99987644

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.41  E-value=2.2e-13  Score=136.52  Aligned_cols=62  Identities=15%  Similarity=0.074  Sum_probs=52.9

Q ss_pred             hcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      ....+..+++|+|++++++.+..++..+       .++||+||||||||++|+++|+.++.+|+.+.+.
T Consensus        19 ~~~~~~~~~~i~g~~~~~~~l~~~l~~~-------~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~   80 (331)
T 2r44_A           19 KEVIDEVGKVVVGQKYMINRLLIGICTG-------GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFT   80 (331)
T ss_dssp             HHHHHHHTTTCCSCHHHHHHHHHHHHHT-------CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             HHHHHHhccceeCcHHHHHHHHHHHHcC-------CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecC
Confidence            3333445688999999999998888542       5899999999999999999999999999999885

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.41  E-value=1e-12  Score=149.37  Aligned_cols=87  Identities=20%  Similarity=0.292  Sum_probs=64.8

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVS  279 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~  279 (577)
                      ++.+...+..+++++|.++.++.+.+.+...     ...++||+||||||||++|+++|..+          +.+++.++
T Consensus       159 ~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~-----~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~  233 (854)
T 1qvr_A          159 DLTRLAAEGKLDPVIGRDEEIRRVIQILLRR-----TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ  233 (854)
T ss_dssp             EHHHHHHTTCSCCCCSCHHHHHHHHHHHHCS-----SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred             hHHHHHhcCCCcccCCcHHHHHHHHHHHhcC-----CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence            4444555678999999999999999988542     23579999999999999999999998          88999999


Q ss_pred             cCccc--cccccchHHHHHHHHHH
Q psy16204        280 SSTLT--SKYRGESEKLVRLLFEM  301 (577)
Q Consensus       280 ~s~l~--~k~~G~~e~~vr~lF~~  301 (577)
                      ++.+.  .+|.|+.+..++.+|..
T Consensus       234 ~~~l~~g~~~~g~~~~~l~~~~~~  257 (854)
T 1qvr_A          234 MGSLLAGAKYRGEFEERLKAVIQE  257 (854)
T ss_dssp             C-----------CHHHHHHHHHHH
T ss_pred             hHHhhccCccchHHHHHHHHHHHH
Confidence            99886  46778888777777765

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.41  E-value=1.7e-12  Score=121.19  Aligned_cols=63  Identities=13%  Similarity=0.045  Sum_probs=50.2

Q ss_pred             CCCcccccC---cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccc
Q psy16204        217 NVQWNKVAG---LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLT  284 (577)
Q Consensus       217 ~v~~~dIiG---~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~  284 (577)
                      ...+++++|   .+.+.+.|...+..+     ...++||+||||||||++|+++++++.   .+++++++.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~   92 (242)
T 3bos_A           24 DETFTSYYPAAGNDELIGALKSAASGD-----GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA   92 (242)
T ss_dssp             TCSTTTSCC--CCHHHHHHHHHHHHTC-----SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred             CCChhhccCCCCCHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            367888886   357888888877653     236899999999999999999999875   678888887653

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.40  E-value=5e-12  Score=123.91  Aligned_cols=68  Identities=16%  Similarity=0.138  Sum_probs=56.1

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCc
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSST  282 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~  282 (577)
                      +|..++.+..+++++|++.+++.|...+...    ..+ ++||+||+|+|||++|+++++.+     +..++++++++
T Consensus        10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~----~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~   82 (323)
T 1sxj_B           10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDG----NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD   82 (323)
T ss_dssp             CHHHHTCCSSGGGCCSCTHHHHHHHHHHHSC----CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred             cHHHhcCCCCHHHHHCCHHHHHHHHHHHHcC----CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence            5667788889999999999999999998642    222 49999999999999999999996     34577777765

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.40  E-value=2.1e-11  Score=121.63  Aligned_cols=64  Identities=13%  Similarity=0.052  Sum_probs=52.8

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh------CCeEEEEecCcc
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC------GTTFFNVSSSTL  283 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el------~~~fv~v~~s~l  283 (577)
                      ..++++|.+..++.|.+.+...+. ......++|+||+|||||+|++++++.+      +.++++++|...
T Consensus        18 ~p~~~~gr~~e~~~l~~~l~~~~~-~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~   87 (386)
T 2qby_A           18 IPDELPHREDQIRKIASILAPLYR-EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI   87 (386)
T ss_dssp             CCSCCTTCHHHHHHHHHSSGGGGG-TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHc-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence            458899999999999998754222 2334689999999999999999999998      899999998654

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.38  E-value=1.4e-11  Score=124.09  Aligned_cols=62  Identities=18%  Similarity=0.039  Sum_probs=52.5

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh-----------CCeEEEEecCcc
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC-----------GTTFFNVSSSTL  283 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el-----------~~~fv~v~~s~l  283 (577)
                      ++++|.++.++.|...+...+. ...+.+++|+||||||||++|+++++++           +.++++++|...
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~-~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~   92 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVK-NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV   92 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHT-TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC
Confidence            7899999999999988754322 2334689999999999999999999998           999999999764

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.36  E-value=1.5e-13  Score=123.38  Aligned_cols=59  Identities=7%  Similarity=-0.006  Sum_probs=46.6

Q ss_pred             cccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        222 KVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       222 dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      +++|.+.+.+.+.+.+.....   ...+|||+||||||||++|++|+..++ +|+.++|+++.
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~---~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~   63 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAK---RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYL   63 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHT---CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHH
T ss_pred             CceeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCC
Confidence            578999999888888754221   225799999999999999999999988 99999998764

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.35  E-value=8e-11  Score=118.99  Aligned_cols=69  Identities=19%  Similarity=0.124  Sum_probs=55.8

Q ss_pred             hhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC-----eEEEEecCc
Q psy16204        209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT-----TFFNVSSST  282 (577)
Q Consensus       209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~-----~fv~v~~s~  282 (577)
                      .+|..++.+..+++++|++.+++.|...+...    +++ ++||+||||||||++|+++|+.+..     .+..+++++
T Consensus        13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g----~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~   86 (340)
T 1sxj_C           13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEG----KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD   86 (340)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTT----CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred             CchHHHhCCCcHHHhcCcHHHHHHHHHHHhcC----CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence            47888899999999999999999999988642    233 4999999999999999999998643     355555543

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.35  E-value=2.8e-12  Score=132.09  Aligned_cols=63  Identities=11%  Similarity=0.026  Sum_probs=49.4

Q ss_pred             ccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEecCccccc
Q psy16204        223 VAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVSSSTLTSK  286 (577)
Q Consensus       223 IiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~~s~l~~k  286 (577)
                      +.|.++..+.|..++...+. ...+.+++|+||||||||++++.+++++          ...+++++|..+.+.
T Consensus        22 L~~Re~E~~~i~~~L~~~i~-~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~   94 (318)
T 3te6_A           22 LKSQVEDFTRIFLPIYDSLM-SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGM   94 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--
T ss_pred             cCCHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCH
Confidence            67888888888877754332 2345789999999999999999999998          457899999877553

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.32  E-value=1.3e-12  Score=146.22  Aligned_cols=84  Identities=19%  Similarity=0.257  Sum_probs=59.8

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEe
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVS  279 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~  279 (577)
                      ++.+......+++|+|++..++.|.+.+..+     ...++||+||||||||++|++||+.+          +++++.++
T Consensus       169 ~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~-----~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~  243 (758)
T 3pxi_A          169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRR-----TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD  243 (758)
T ss_dssp             BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCS-----SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred             HHHHHHhhCCCCCccCchHHHHHHHHHHhCC-----CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence            3444556667899999999999999988652     23579999999999999999999997          77787777


Q ss_pred             cCccccccccchHHHHHHHHHH
Q psy16204        280 SSTLTSKYRGESEKLVRLLFEM  301 (577)
Q Consensus       280 ~s~l~~k~~G~~e~~vr~lF~~  301 (577)
                      +   ..+|.|+.+..++.+|..
T Consensus       244 ~---g~~~~G~~e~~l~~~~~~  262 (758)
T 3pxi_A          244 M---GTKYRGEFEDRLKKVMDE  262 (758)
T ss_dssp             ------------CTTHHHHHHH
T ss_pred             c---cccccchHHHHHHHHHHH
Confidence            7   445677777777766655

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=99.30  E-value=2.9e-12  Score=155.22  Aligned_cols=160  Identities=13%  Similarity=0.045  Sum_probs=101.5

Q ss_pred             cCCCCCcccccCcHHHHHHHHHHHHCcCCC--------------cc--------------------ccce--eEEecCCC
Q psy16204        214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIM--------------PE--------------------FFKE--ALERHSHG  257 (577)
Q Consensus       214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~--------------~~--------------------~~k~--ILL~GPpG  257 (577)
                      ....+.|.+|.|++++|+.+.+++.+|+.+              ..                    ++++  +|+|||||
T Consensus      1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A         1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp             -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred             ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence            344589999999999999999999888722              11                    2344  99999999


Q ss_pred             CChHHHHHHHHHHh---CCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHH
Q psy16204        258 TGKTMLAKAVATEC---GTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQI  334 (577)
Q Consensus       258 tGKT~LAkaLA~el---~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (577)
                      ||||+||++++.+.   |.+.+.|+..+....+.       ..-|.                                  
T Consensus      1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~-------~~~~G---------------------------------- 1131 (1706)
T 3cmw_A         1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-------ARKLG---------------------------------- 1131 (1706)
T ss_dssp             SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH-------HHHTT----------------------------------
T ss_pred             CChHHHHHHHHHHhhhcCCceeEEEcccchHHHH-------HHHhC----------------------------------
Confidence            99999999999887   45667777765442111       00000                                  


Q ss_pred             HHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCc----chhhhhhhHHH
Q psy16204        335 LQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGH----SGRINKNSLFQ  410 (577)
Q Consensus       335 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~~~~~  410 (577)
                                                                          |    ....++++    .++.++.++..
T Consensus      1132 ----------------------------------------------------~----d~~~~~~~~~~~~e~~l~~~~~~ 1155 (1706)
T 3cmw_A         1132 ----------------------------------------------------V----DIDNLLCSQPDTGEQALEICDAL 1155 (1706)
T ss_dssp             ----------------------------------------------------C----CGGGCEEECCSSHHHHHHHHHHH
T ss_pred             ----------------------------------------------------C----CHHHHhhccccchHHHHHHHHHH
Confidence                                                                0    00111222    34445555555


Q ss_pred             HHhcCCeEEEEccccccccCC---CCCC--hhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchh
Q psy16204        411 ARCYAPSTIFIDEVDSLCSMR---GSDS--EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQ  475 (577)
Q Consensus       411 a~~~~p~IIfIDEID~l~~~r---~~~~--~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~  475 (577)
                      |+...||+||+||||.|++.+   |..+  ......|+++++|..|++....    ++|+|| +||+..+
T Consensus      1156 ar~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~----~~v~v~-~~n~~~~ 1220 (1706)
T 3cmw_A         1156 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ----SNTLLI-FINQIRM 1220 (1706)
T ss_dssp             HHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH----TTCEEE-EEECEEE
T ss_pred             HHhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhcc----CCeEEE-Eeccccc
Confidence            899999999999999999983   2222  2356778999999999986543    456666 7787755

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.28  E-value=9.4e-13  Score=145.09  Aligned_cols=57  Identities=16%  Similarity=0.059  Sum_probs=41.0

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCC--c-cc---cceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIM--P-EF---FKEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~--~-~~---~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      ..|+|++.+|..|.-++......  + ..   ..++||+||||||||+||+++|+.++..++.
T Consensus       295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~  357 (595)
T 3f9v_A          295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYT  357 (595)
T ss_dssp             STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred             chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceec
Confidence            57899999988775554332100  0 00   1279999999999999999999998766543

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.27  E-value=4.9e-11  Score=119.61  Aligned_cols=58  Identities=16%  Similarity=0.057  Sum_probs=48.1

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .|..++.+..+++++|++.+++.|...+.   .....+. +||+||+|+|||++++++|.++
T Consensus         3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~---~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E            3 LWVDKYRPKSLNALSHNEELTNFLKSLSD---QPRDLPH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             -CTTTTCCCSGGGCCSCHHHHHHHHTTTT---CTTCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             cchhccCCCCHHHhcCCHHHHHHHHHHHh---hCCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence            57788999999999999999999888761   2223334 9999999999999999999975

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.25  E-value=2.4e-11  Score=131.86  Aligned_cols=54  Identities=11%  Similarity=0.086  Sum_probs=45.1

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC--CeEEEEecC
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG--TTFFNVSSS  281 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~--~~fv~v~~s  281 (577)
                      ..|+|++++++.+..++...       .++||+||||||||+||++||..++  .+|..+.+.
T Consensus        22 ~~ivGq~~~i~~l~~al~~~-------~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~   77 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSG-------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR   77 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHT-------CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCT
T ss_pred             hhhHHHHHHHHHHHHHHhcC-------CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence            56899999999888887543       4899999999999999999999885  466666664

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.25  E-value=4.9e-11  Score=130.95  Aligned_cols=54  Identities=28%  Similarity=0.313  Sum_probs=47.1

Q ss_pred             hcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      ..+++..+++++|++.+++.|..++...       ..+||+||||||||+||++||..+..
T Consensus        33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~g-------~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           33 IEVPEKLIDQVIGQEHAVEVIKTAANQK-------RHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             SCCCSSHHHHCCSCHHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             ccccccccceEECchhhHhhccccccCC-------CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            4567778999999999999999988543       48999999999999999999998853

>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*

Probab=99.19  E-value=3.7e-11  Score=101.76  Aligned_cols=80  Identities=20%  Similarity=0.395  Sum_probs=61.3

Q ss_pred             hhHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHH
Q psy16204        475 QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR  554 (577)
Q Consensus       475 ~L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~  554 (577)
                      .|++.+++..++..++|++.||+.|+||||+||.+||++|++.++|+..                 ..|+.+||.+|+.+
T Consensus         8 ~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~-----------------~~i~~~df~~Al~~   70 (88)
T 3vlf_B            8 NIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-----------------KVATEKDFLKAVDK   70 (88)
T ss_dssp             HHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC-----------------SSBCHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc-----------------ccCCHHHHHHHHHH
Confidence            4888899999998899999999999999999999999999999999843                 46999999999999


Q ss_pred             hCCCCCHH-HHHHHHHHH
Q psy16204        555 CRKSVTAH-DLSKYDSWM  571 (577)
Q Consensus       555 ~~psv~~~-~~~~~~~~~  571 (577)
                      +.+++... ...+|..|.
T Consensus        71 v~~~~~~~~~~~~y~~w~   88 (88)
T 3vlf_B           71 VISGYKKFSSTSRYMQYN   88 (88)
T ss_dssp             HTC---------------
T ss_pred             HhcCcccccchhHHhccC
Confidence            99988654 478888884

>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*

Probab=99.18  E-value=1.2e-11  Score=102.77  Aligned_cols=76  Identities=17%  Similarity=0.320  Sum_probs=60.5

Q ss_pred             hhHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHH
Q psy16204        475 QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR  554 (577)
Q Consensus       475 ~L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~  554 (577)
                      .|++.+++.+++..++|+..||+.|+||||+||.++|++|++.++++.                 ...|+.+||..|+++
T Consensus         8 ~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~~df~~Al~~   70 (83)
T 3aji_B            8 LIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-----------------RYIVLAKDFEKAYKT   70 (83)
T ss_dssp             HHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-----------------CSSBCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHHHHHHHH
Confidence            478888898888889999999999999999999999999999998874                 257999999999999


Q ss_pred             hCCCCCHHHHHHHH
Q psy16204        555 CRKSVTAHDLSKYD  568 (577)
Q Consensus       555 ~~psv~~~~~~~~~  568 (577)
                      ++|+++ +++..|+
T Consensus        71 ~~ps~~-~~l~~y~   83 (83)
T 3aji_B           71 VIKKDE-QEHEFYK   83 (83)
T ss_dssp             HCC-----------
T ss_pred             HccCch-HHHHhcC
Confidence            999999 8888774

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=99.11  E-value=4.7e-10  Score=116.95  Aligned_cols=62  Identities=11%  Similarity=0.083  Sum_probs=48.1

Q ss_pred             cccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccc
Q psy16204        220 WNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLT  284 (577)
Q Consensus       220 ~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~  284 (577)
                      +..++|.....+.+.+.+.. +...  -..||++|++||||+++|++|+....   .+|+.++|+.+.
T Consensus       136 ~~~~ig~s~~m~~l~~~i~~-~a~~--~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~  200 (387)
T 1ny5_A          136 EEEYVFESPKMKEILEKIKK-ISCA--ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIP  200 (387)
T ss_dssp             CCCCCCCSHHHHHHHHHHHH-HTTC--CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSC
T ss_pred             chhhhhccHHhhHHHHHHHH-hcCC--CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCC
Confidence            45688888777777776643 2222  23689999999999999999998875   699999999764

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=99.08  E-value=2.2e-09  Score=109.16  Aligned_cols=46  Identities=15%  Similarity=-0.030  Sum_probs=37.7

Q ss_pred             CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        225 GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       225 G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .++++.+.|...+..    ..++.++||+||+|+|||++|+++|+.+.+.
T Consensus         6 w~~~~~~~l~~~i~~----~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~   51 (334)
T 1a5t_A            6 WLRPDFEKLVASYQA----GRGHHALLIQALPGMGDDALIYALSRYLLCQ   51 (334)
T ss_dssp             GGHHHHHHHHHHHHT----TCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             chHHHHHHHHHHHHc----CCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence            467778888887753    3455689999999999999999999998764

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.07  E-value=4e-09  Score=106.95  Aligned_cols=64  Identities=14%  Similarity=-0.096  Sum_probs=49.2

Q ss_pred             CcccccCcHHHHHHHHHHH-HCcCCCc-cccceeEE--ecCCCCChHHHHHHHHHHh---------CCeEEEEecCc
Q psy16204        219 QWNKVAGLTEAKAILQEAM-VLPTIMP-EFFKEALE--RHSHGTGKTMLAKAVATEC---------GTTFFNVSSST  282 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l-~~pl~~~-~~~k~ILL--~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~  282 (577)
                      ..++++|.+..++.|.+.+ ....... .....+++  +||+|+|||+|++.+++.+         +..+++++|..
T Consensus        20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (412)
T 1w5s_A           20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN   96 (412)
T ss_dssp             CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred             CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence            3478999999999998887 4322110 23457899  9999999999999999887         56788888754

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=99.06  E-value=1.3e-09  Score=110.75  Aligned_cols=52  Identities=6%  Similarity=0.005  Sum_probs=39.5

Q ss_pred             CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC------CeEEEEecC
Q psy16204        225 GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG------TTFFNVSSS  281 (577)
Q Consensus       225 G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~------~~fv~v~~s  281 (577)
                      |++++.+.|..++...-     ...+|||||||+|||++|+++|+.|+      ..|+.++++
T Consensus         1 g~~~~~~~L~~~i~~~~-----~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~   58 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSE-----GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE   58 (305)
T ss_dssp             ---CHHHHHHHHHHTCS-----SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred             ChHHHHHHHHHHHHCCC-----CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence            78889999999986542     35899999999999999999999752      356666654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.98  E-value=1e-09  Score=100.69  Aligned_cols=68  Identities=22%  Similarity=0.075  Sum_probs=47.2

Q ss_pred             cCCCCCcccccC----cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCcc
Q psy16204        214 NNPNVQWNKVAG----LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----GTTFFNVSSSTL  283 (577)
Q Consensus       214 ~~~~v~~~dIiG----~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~l  283 (577)
                      ++...+|+++++    +..+++.+.+++..-.  .....+++|+||+|||||+|+++++..+    |..++++++.++
T Consensus         3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~   78 (180)
T 3ec2_A            3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFN--PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL   78 (180)
T ss_dssp             SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC--GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred             hhhhCccccccCCCHHHHHHHHHHHHHHHhcc--ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            345567888875    5666666766664311  1123679999999999999999999887    556666665443

>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B

Probab=98.97  E-value=1.4e-10  Score=96.51  Aligned_cols=76  Identities=16%  Similarity=0.271  Sum_probs=51.6

Q ss_pred             hhHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHH
Q psy16204        475 QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR  554 (577)
Q Consensus       475 ~L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~  554 (577)
                      .|++.+++.+++..++|+..||+.|+||||+||.++|++|++.++++..                 ..|+.+||..|+.+
T Consensus         5 ~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~-----------------~~i~~~df~~Al~~   67 (82)
T 2dzn_B            5 LIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-----------------YVILQSDLEEAYAT   67 (82)
T ss_dssp             ---------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------CCcCHHHHHHHHHH
Confidence            3667778888887889999999999999999999999999999999842                 46999999999999


Q ss_pred             h-CCCCCHHHHHHH
Q psy16204        555 C-RKSVTAHDLSKY  567 (577)
Q Consensus       555 ~-~psv~~~~~~~~  567 (577)
                      + .++++..++..|
T Consensus        68 v~~~~~~~~~~~~y   81 (82)
T 2dzn_B           68 QVKTDNTVDKFDFY   81 (82)
T ss_dssp             TCC-----------
T ss_pred             HHcCcCChHHHHhh
Confidence            8 588888888766

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}

Probab=98.94  E-value=8.4e-10  Score=93.43  Aligned_cols=66  Identities=21%  Similarity=0.501  Sum_probs=60.9

Q ss_pred             hHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHh
Q psy16204        476 LLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC  555 (577)
Q Consensus       476 L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~  555 (577)
                      |++.+++.+++..++|+..||+.|+||||+||.+||++|++.++|+..                 ..|+.+||.+|+.++
T Consensus        19 IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~-----------------~~I~~~df~~Al~~v   81 (86)
T 2krk_A           19 ILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR-----------------VHVTQEDFEMAVAKV   81 (86)
T ss_dssp             HHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC-----------------CCCCHHHHHHHHHHH
Confidence            888999999888899999999999999999999999999999998852                 479999999999999


Q ss_pred             CCC
Q psy16204        556 RKS  558 (577)
Q Consensus       556 ~ps  558 (577)
                      +|.
T Consensus        82 ~p~   84 (86)
T 2krk_A           82 MQK   84 (86)
T ss_dssp             HCC
T ss_pred             ccC
Confidence            875

>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}

Probab=98.83  E-value=3.7e-09  Score=86.79  Aligned_cols=67  Identities=21%  Similarity=0.498  Sum_probs=59.5

Q ss_pred             hhHHHhhcCcccccccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHH
Q psy16204        475 QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR  554 (577)
Q Consensus       475 ~L~~allrr~~i~~~vdl~~LA~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~  554 (577)
                      .|++.+++.+.+..++|+..||+.|+||||+||.++|++|++.++++..                 ..|+.+||.+|+.+
T Consensus        10 ~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~-----------------~~i~~~d~~~Al~~   72 (78)
T 3kw6_A           10 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR-----------------VHVTQEDFEMAVAK   72 (78)
T ss_dssp             HHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-----------------CCCCHHHHHHHHHH
Confidence            3788888888888899999999999999999999999999999998842                 47999999999999


Q ss_pred             hCCC
Q psy16204        555 CRKS  558 (577)
Q Consensus       555 ~~ps  558 (577)
                      +..+
T Consensus        73 v~~~   76 (78)
T 3kw6_A           73 VMQK   76 (78)
T ss_dssp             HHC-
T ss_pred             HHhc
Confidence            7653

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=98.79  E-value=3.2e-08  Score=102.79  Aligned_cols=62  Identities=15%  Similarity=0.217  Sum_probs=47.3

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe--EEEEecCcccc
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT--FFNVSSSTLTS  285 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~--fv~v~~s~l~~  285 (577)
                      ..++|.......+.+.+..-.   .....+|++|++||||+.+|++++...+..  |+.++|+.+..
T Consensus       129 ~~~ig~s~~~~~~~~~~~~~a---~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~  192 (368)
T 3dzd_A          129 IEFVGEHPKILEIKRLIPKIA---KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQ  192 (368)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHH---TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCT
T ss_pred             ccccccchHHHHHHhhhhhhh---ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCCh
Confidence            468888887777776653211   112369999999999999999999988643  99999998744

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.73  E-value=1.2e-08  Score=94.70  Aligned_cols=66  Identities=21%  Similarity=0.108  Sum_probs=46.1

Q ss_pred             CCCcccccCcH----HHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        217 NVQWNKVAGLT----EAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       217 ~v~~~dIiG~~----~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      ..+++++++..    .+++.+.+++...... ..+.+++|+||||||||+||++++.++   +.+++.+++.++
T Consensus        21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~   93 (202)
T 2w58_A           21 RASLSDVDLNDDGRIKAIRFAERFVAEYEPG-KKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL   93 (202)
T ss_dssp             CCCTTSSCCSSHHHHHHHHHHHHHHHHCCSS-CCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred             cCCHhhccCCChhHHHHHHHHHHHHHHhhhc-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence            35677887643    3555566665432111 112689999999999999999999988   577888877643

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.53  E-value=5.6e-08  Score=101.01  Aligned_cols=31  Identities=23%  Similarity=0.291  Sum_probs=24.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCC--eEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGT--TFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~--~fv~v  278 (577)
                      ..+||+||||||||+||.++|.+.+.  .|+.+
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            34799999999999999999987554  35554

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.52  E-value=1.8e-07  Score=117.94  Aligned_cols=38  Identities=21%  Similarity=0.235  Sum_probs=31.3

Q ss_pred             ceeEEecCCCCChHHHHH-HHHHHhCCeEEEEecCcccc
Q psy16204        248 KEALERHSHGTGKTMLAK-AVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAk-aLA~el~~~fv~v~~s~l~~  285 (577)
                      +++||+||||||||++|+ .+++..+..++.++++..++
T Consensus      1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts 1306 (2695)
T 4akg_A         1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT 1306 (2695)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC
T ss_pred             CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC
Confidence            689999999999999995 55555578889999887654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.48  E-value=9.1e-08  Score=96.94  Aligned_cols=64  Identities=16%  Similarity=0.063  Sum_probs=43.6

Q ss_pred             CCcccccCc----HHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC----CeEEEEecCcc
Q psy16204        218 VQWNKVAGL----TEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG----TTFFNVSSSTL  283 (577)
Q Consensus       218 v~~~dIiG~----~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~----~~fv~v~~s~l  283 (577)
                      .+++++.+.    ..+.+.+.+++.....  ....+++||||||||||+||++||.++.    .+++++.+.++
T Consensus       121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~~--~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l  192 (308)
T 2qgz_A          121 IHLSDIDVNNASRMEAFSAILDFVEQYPS--AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF  192 (308)
T ss_dssp             CCGGGSCCCSHHHHHHHHHHHHHHHHCSC--SSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred             CCHhhCcCCChHHHHHHHHHHHHHHhccc--cCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence            456666652    3455555566643211  1246899999999999999999998764    67777776543

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.41  E-value=2.8e-07  Score=84.06  Aligned_cols=36  Identities=17%  Similarity=0.261  Sum_probs=30.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      ..++|+||+|+|||+|+++++..+   |..++++++.++
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~   75 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM   75 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence            578999999999999999999987   666777776654

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.32  E-value=7.9e-06  Score=80.39  Aligned_cols=59  Identities=17%  Similarity=0.119  Sum_probs=48.7

Q ss_pred             CCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      .+......++|.+...+.|.+.+...       ..++++||+|+|||+|++.+++..+  ++++++..
T Consensus         6 ~~~~~~~~~~gR~~el~~L~~~l~~~-------~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~   64 (350)
T 2qen_A            6 RPKTRREDIFDREEESRKLEESLENY-------PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRE   64 (350)
T ss_dssp             SCCCSGGGSCSCHHHHHHHHHHHHHC-------SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHH
T ss_pred             CCCCChHhcCChHHHHHHHHHHHhcC-------CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeec
Confidence            34456678999999999999988531       5799999999999999999999986  67777654

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.32  E-value=1.1e-05  Score=79.42  Aligned_cols=60  Identities=13%  Similarity=0.104  Sum_probs=50.1

Q ss_pred             CCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      .+......++|.+...+.|.+ +..        ..++++||+|+|||+|++.++++++..++++++...
T Consensus         7 ~~~~~~~~~~gR~~el~~L~~-l~~--------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~   66 (357)
T 2fna_A            7 SPKDNRKDFFDREKEIEKLKG-LRA--------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF   66 (357)
T ss_dssp             SCCCSGGGSCCCHHHHHHHHH-TCS--------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CCCCCHHHhcChHHHHHHHHH-hcC--------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhh
Confidence            344566789999999999988 632        489999999999999999999999888888888653

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=98.19  E-value=1.9e-06  Score=82.84  Aligned_cols=61  Identities=20%  Similarity=0.113  Sum_probs=39.7

Q ss_pred             cCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCccc
Q psy16204        414 YAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVI  486 (577)
Q Consensus       414 ~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i  486 (577)
                      ..++||+|||++.+.+.+..+.+.       ..+|..++.-.     ...+-||.+|+.+..|+..+..++..
T Consensus        86 ~~~~vliIDEAq~l~~~~~~~~e~-------~rll~~l~~~r-----~~~~~iil~tq~~~~l~~~lr~ri~~  146 (199)
T 2r2a_A           86 NIGSIVIVDEAQDVWPARSAGSKI-------PENVQWLNTHR-----HQGIDIFVLTQGPKLLDQNLRTLVRK  146 (199)
T ss_dssp             GTTCEEEETTGGGTSBCCCTTCCC-------CHHHHGGGGTT-----TTTCEEEEEESCGGGBCHHHHTTEEE
T ss_pred             cCceEEEEEChhhhccCccccchh-------HHHHHHHHhcC-----cCCeEEEEECCCHHHHhHHHHHHhhe
Confidence            347899999999997655322221       12555554322     23356677788899999998887654

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=98.17  E-value=4.6e-06  Score=90.80  Aligned_cols=50  Identities=10%  Similarity=-0.097  Sum_probs=37.8

Q ss_pred             ccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHH-HHHhCC
Q psy16204        223 VAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAV-ATECGT  273 (577)
Q Consensus       223 IiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaL-A~el~~  273 (577)
                      |.|++.+|..|.-++..+-....---+|||.|+||| ||+||+++ ++.+..
T Consensus       215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR  265 (506)
T 3f8t_A          215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR  265 (506)
T ss_dssp             STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS
T ss_pred             cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC
Confidence            899999999888888654322111126999999999 99999999 665543

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=98.12  E-value=5.4e-06  Score=102.42  Aligned_cols=54  Identities=20%  Similarity=0.198  Sum_probs=36.5

Q ss_pred             hhhhhhHHHHHhcCCeEEEEccccccccCC---CCCCh-hH-HHHHHHHHHHHHHhCCC
Q psy16204        402 RINKNSLFQARCYAPSTIFIDEVDSLCSMR---GSDSE-HE-ASRRFKAELLIQMDGLN  455 (577)
Q Consensus       402 ~~~~~~~~~a~~~~p~IIfIDEID~l~~~r---~~~~~-~~-~~~~v~~~LL~~mD~~~  455 (577)
                      ..++.+.+.++...|++|||||++.+.+.+   +..++ +. ...++++++|..|.+..
T Consensus      1492 ~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~ 1550 (2050)
T 3cmu_A         1492 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1550 (2050)
T ss_dssp             HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHH
Confidence            444555556788999999999999888742   22121 11 24578888888887655

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.06  E-value=2.2e-05  Score=99.42  Aligned_cols=52  Identities=19%  Similarity=0.096  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        227 TEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       227 ~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      +.....|..++...       .++++.||+|||||++++.+|+.+|.+++.++|++-++
T Consensus       632 dr~~~tl~~Al~~~-------~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld  683 (2695)
T 4akg_A          632 LIGFATLTDSLHQK-------YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD  683 (2695)
T ss_dssp             HHHHHHHHHHHHTT-------CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC
T ss_pred             HHHHHHHHHHHHhC-------CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC
Confidence            34444455555332       57899999999999999999999999999999987654

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.93  E-value=7.2e-06  Score=80.55  Aligned_cols=43  Identities=12%  Similarity=-0.002  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        228 EAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       228 ~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .....|+..+..   .|+ .+++|||||||||||++|.+||+.+...
T Consensus        43 ~f~~~l~~~~~~---iPk-kn~ili~GPPGtGKTt~a~ala~~l~g~   85 (212)
T 1tue_A           43 TFLGALKSFLKG---TPK-KNCLVFCGPANTGKSYFGMSFIHFIQGA   85 (212)
T ss_dssp             HHHHHHHHHHHT---CTT-CSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred             HHHHHHHHHHhc---CCc-ccEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            345555555532   122 2579999999999999999999997654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.82  E-value=2e-05  Score=82.88  Aligned_cols=30  Identities=33%  Similarity=0.401  Sum_probs=26.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      ..++|+||+|+|||+|+++|+..++..++.
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            468999999999999999999988776554

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.81  E-value=0.00025  Score=65.65  Aligned_cols=34  Identities=21%  Similarity=0.206  Sum_probs=26.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      ..++|+||+|+|||+|++.++..+   +..+++++..
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~   60 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE   60 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence            347899999999999999999654   4566666654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.72  E-value=0.00032  Score=65.66  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=23.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      .+.|.||+|+|||+|++.|+..+++.+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~   28 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGKRA   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence            468999999999999999999987544

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.65  E-value=5.2e-06  Score=89.24  Aligned_cols=119  Identities=14%  Similarity=0.038  Sum_probs=45.4

Q ss_pred             CCCccccccccCCCCCCcchhhhhhhhcccCCCCcc----cCCCC-cchhhhhhhHHHHHhcCCeEEEEccccccccCCC
Q psy16204        358 SGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTC----QSHEG-HSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRG  432 (577)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~  432 (577)
                      ++.+++.++++|+||+..+....-.-..++......    ..++| +...+++.++..+....    ++||++.+...  
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~----~~De~d~~~~~--  122 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLV----RQQEIAKNRAR--  122 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHH----HHHHHHSCC----
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcc----hhhhhhhhhcc--
Confidence            578899999999999998554444334444333211    13677 57888888888887654    58999887542  


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEe-cCCchhhHHHhhcCccccccc
Q psy16204        433 SDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAA-TNHPYQLLTLCLEGVVIDVNL  490 (577)
Q Consensus       433 ~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIat-TN~p~~L~~allrr~~i~~~v  490 (577)
                        ......+++++.||..||++.+.    ..|  +++ ||+|+.|+++++++.+++..|
T Consensus       123 --~~~~~e~rvl~~LL~~~dg~~~~----~~v--~a~~TN~~~~ld~aL~rggr~D~~i  173 (444)
T 1g41_A          123 --AEDVAEERILDALLPPAKNQWGE----VEN--HDSHSSTRQAFRKKLREGQLDDKEI  173 (444)
T ss_dssp             -----------------------------------------------------------
T ss_pred             --chhhHHHHHHHHHHHHhhccccc----ccc--ccccccCHHHHHHHHHcCCCcceEE
Confidence              23455679999999999998753    223  555 999999999999988777654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.61  E-value=0.00055  Score=63.32  Aligned_cols=34  Identities=21%  Similarity=0.113  Sum_probs=29.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      -++|+||||+|||++++.+|...+.+.++++...
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~   55 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG   55 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence            4799999999999999999986677888888754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.53  E-value=3.9e-05  Score=69.31  Aligned_cols=36  Identities=8%  Similarity=0.213  Sum_probs=31.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      .-|+|.|+||+|||++|++||+.++.+|+.++...+
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~   39 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL   39 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence            358999999999999999999999999888776543

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.44  E-value=0.00068  Score=87.18  Aligned_cols=37  Identities=22%  Similarity=0.161  Sum_probs=33.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      +..+.||+|||||+++|.+|+.+|.+++.++|++-++
T Consensus       606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d  642 (3245)
T 3vkg_A          606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD  642 (3245)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC
Confidence            5689999999999999999999999999999987544

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.44  E-value=6.7e-05  Score=68.32  Aligned_cols=31  Identities=16%  Similarity=0.194  Sum_probs=28.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      +.|+|.|++|||||++|+.||+.++.+|+..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~   36 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDS   36 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence            5789999999999999999999999988754

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=97.41  E-value=0.011  Score=63.35  Aligned_cols=49  Identities=12%  Similarity=-0.044  Sum_probs=39.5

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHH
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .....++|.+..++.|.+.+...   ..-.+-|+++|++|+|||+||+.++.
T Consensus       121 ~~~~~~vGR~~~l~~L~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          121 QRPVVFVTRKKLVNAIQQKLSKL---KGEPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHTTS---TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCCCeecccHHHHHHHHHHHhcc---cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence            45678999999999999998532   12235689999999999999999874

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.36  E-value=0.00088  Score=62.91  Aligned_cols=34  Identities=18%  Similarity=0.216  Sum_probs=28.0

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~  282 (577)
                      -++|+||+|+|||+|++.++..+         +...++++...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            47999999999999999999852         45677777754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.32  E-value=0.00012  Score=66.53  Aligned_cols=31  Identities=35%  Similarity=0.551  Sum_probs=27.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      +.|+|.|+||+|||++++.||+.++.+++.+
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~   42 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKSGLKYINV   42 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence            4689999999999999999999999887654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.31  E-value=0.00025  Score=69.03  Aligned_cols=53  Identities=13%  Similarity=0.078  Sum_probs=37.8

Q ss_pred             HHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        231 AILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       231 ~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      +.+...+.........+..++|.|+||+|||++|+.|+..++..++.++...+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~   68 (253)
T 2p5t_B           16 ARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF   68 (253)
T ss_dssp             HHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred             HHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence            33333333333333344678999999999999999999999877777777655

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.31  E-value=0.00014  Score=64.66  Aligned_cols=31  Identities=13%  Similarity=0.001  Sum_probs=27.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      -|+|.|++|+|||++|+.|++.++.+|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d   33 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS   33 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence            4789999999999999999999998876544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.30  E-value=0.00018  Score=92.36  Aligned_cols=38  Identities=18%  Similarity=0.179  Sum_probs=29.6

Q ss_pred             ceeEEecCCCCChHHHHHH-HHHHhCCeEEEEecCcccc
Q psy16204        248 KEALERHSHGTGKTMLAKA-VATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAka-LA~el~~~fv~v~~s~l~~  285 (577)
                      +.|||+||||||||++++. +++..+.+++.++++..++
T Consensus      1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt 1343 (3245)
T 3vkg_A         1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT 1343 (3245)
T ss_dssp             CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC
Confidence            5799999999999987765 4444467788899987654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.29  E-value=0.00062  Score=63.29  Aligned_cols=34  Identities=21%  Similarity=0.204  Sum_probs=26.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG---------TTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~  282 (577)
                      -+.|.||+|+|||+|++.|+..+.         ...++++...
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence            478999999999999999998543         2366666543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.25  E-value=0.0044  Score=70.92  Aligned_cols=52  Identities=12%  Similarity=-0.066  Sum_probs=41.1

Q ss_pred             CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHH
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .+.....++|.++.++.|.+.+...-   .-.+-|.|+|+.|+|||+||+.++..
T Consensus       119 ~p~~~~~~vgR~~~~~~l~~~l~~~~---~~~~~v~i~G~gG~GKTtLa~~~~~~  170 (1249)
T 3sfz_A          119 VPQRPVIFVTRKKLVHAIQQKLWKLN---GEPGWVTIYGMAGCGKSVLAAEAVRD  170 (1249)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHTTT---TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred             CCCCCceeccHHHHHHHHHHHHhhcc---CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence            33456679999999999999985431   22356889999999999999998865

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.24  E-value=0.00018  Score=66.82  Aligned_cols=35  Identities=20%  Similarity=0.141  Sum_probs=29.2

Q ss_pred             ccccceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        244 PEFFKEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       244 ~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      +..+..|+|.|+||+|||++|+.|++.++.+++.+
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~   51 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST   51 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence            33445689999999999999999999999886544

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.23  E-value=0.00022  Score=64.75  Aligned_cols=29  Identities=28%  Similarity=0.414  Sum_probs=26.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .|+|.|+||+|||++|+.||+.++.+|+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d   34 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFLD   34 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence            58999999999999999999999988764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.22  E-value=0.00016  Score=67.42  Aligned_cols=32  Identities=28%  Similarity=0.379  Sum_probs=28.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      +.|+|.|++|||||+++++||+.++.+|+..+
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d   57 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD   57 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence            46899999999999999999999999886543

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.21  E-value=0.007  Score=56.70  Aligned_cols=34  Identities=24%  Similarity=0.229  Sum_probs=27.2

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      -++++||||+|||++|..+|..+   +...++++...
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~   61 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE   61 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            47999999999999998887653   56777777653

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.21  E-value=0.0013  Score=68.81  Aligned_cols=36  Identities=19%  Similarity=0.122  Sum_probs=29.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      .-++|+||||+|||+||..++..+   +..+++++....
T Consensus        62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s  100 (356)
T 3hr8_A           62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA  100 (356)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence            357999999999999999999875   567778877654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.20  E-value=0.00017  Score=65.75  Aligned_cols=29  Identities=21%  Similarity=0.400  Sum_probs=26.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .|+|.|+||+|||++|+.||+.+|++++.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id   32 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD   32 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence            48899999999999999999999998764

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.20  E-value=0.0012  Score=68.97  Aligned_cols=35  Identities=23%  Similarity=0.219  Sum_probs=29.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      .-++|+|+||+|||+||..+|..+   +.++++++...
T Consensus        75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~  112 (366)
T 1xp8_A           75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH  112 (366)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            458999999999999999988765   56788888764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.19  E-value=0.00044  Score=69.26  Aligned_cols=39  Identities=23%  Similarity=0.213  Sum_probs=31.8

Q ss_pred             ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        246 FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       246 ~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      .+.-++|.||||+|||++|+.|+++++..++.|++..+.
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R   70 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK   70 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence            345689999999999999999999986566777765543

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.17  E-value=0.00029  Score=63.40  Aligned_cols=31  Identities=16%  Similarity=0.206  Sum_probs=28.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      ..|+|.|++|||||++|+.||+.+|.+|+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~   38 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT   38 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence            5789999999999999999999999988653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.16  E-value=0.025  Score=60.78  Aligned_cols=37  Identities=27%  Similarity=0.130  Sum_probs=29.3

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      +.-|++.|++|+|||+++..||..+   |..+..+.+..+
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~  139 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW  139 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            4568999999999999999999776   566666766543

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.15  E-value=0.0002  Score=62.92  Aligned_cols=29  Identities=28%  Similarity=0.339  Sum_probs=25.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      -|+|.|+||+|||++|+.| +.+|.+++.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~   31 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KERGAKVIVM   31 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence            4789999999999999999 8899887654

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.10  E-value=0.00033  Score=64.77  Aligned_cols=39  Identities=13%  Similarity=0.250  Sum_probs=30.6

Q ss_pred             cCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        240 PTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       240 pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      |...+..+.-|+|.|++|+|||++|+.|++.++.+++..
T Consensus         8 ~~~~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~   46 (203)
T 1ukz_A            8 PAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA   46 (203)
T ss_dssp             CCSCTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred             CCCCCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence            333344446789999999999999999999999866543

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.10  E-value=0.00034  Score=63.60  Aligned_cols=30  Identities=27%  Similarity=0.277  Sum_probs=27.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .-|+|.|+||+|||++++.|++.++.+++.
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~   35 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALATGLRLPLLS   35 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence            458999999999999999999999987765

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.10  E-value=0.00037  Score=62.56  Aligned_cols=30  Identities=17%  Similarity=0.443  Sum_probs=26.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      ..|.|.||+|+|||++++.||..++.+++.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id   34 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD   34 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence            358899999999999999999999986653

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.09  E-value=0.00038  Score=62.28  Aligned_cols=29  Identities=21%  Similarity=0.365  Sum_probs=26.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .|+|.|++|+|||++|+.||+.++.+++.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id   32 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARALGYEFVD   32 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence            58999999999999999999999988764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.07  E-value=0.01  Score=63.53  Aligned_cols=36  Identities=22%  Similarity=0.061  Sum_probs=28.3

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      +.-++|.|++|+|||+++..||..+   |..+..+++..
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~  135 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV  135 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence            3568899999999999999999766   56666666653

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.04  E-value=0.00046  Score=62.38  Aligned_cols=30  Identities=17%  Similarity=0.212  Sum_probs=26.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .-|+|.|+||+|||++|+.|++.++.+++.
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~   33 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS   33 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            458999999999999999999999987643

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.03  E-value=0.002  Score=68.19  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=26.1

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG---------TTFFNVSSST  282 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~  282 (577)
                      ++|+||||+|||+|++.++-.+.         ...++++..+
T Consensus       181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence            78999999999999998875542         3477777754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.03  E-value=0.00032  Score=63.94  Aligned_cols=31  Identities=16%  Similarity=0.250  Sum_probs=27.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      .-|+|.|+||+|||++|+.||+.++.+++..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~   40 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST   40 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence            4689999999999999999999999876544

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.03  E-value=0.0005  Score=65.76  Aligned_cols=33  Identities=18%  Similarity=0.062  Sum_probs=28.3

Q ss_pred             ccceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        246 FFKEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       246 ~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      ....|+|.|+||+|||++|+.||+.++.+++..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   47 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT   47 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence            345699999999999999999999999876543

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.02  E-value=0.00038  Score=68.22  Aligned_cols=32  Identities=25%  Similarity=0.211  Sum_probs=28.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSS  280 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~  280 (577)
                      -++|.||||+|||+||+.||+.++.+++..+.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~   34 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR   34 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence            47899999999999999999999988876655

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.02  E-value=0.001  Score=67.30  Aligned_cols=35  Identities=14%  Similarity=0.151  Sum_probs=29.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~  282 (577)
                      .-++|+||||+|||++|..+|..+         +...++++...
T Consensus       108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            358999999999999999999876         56788888764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.01  E-value=0.00046  Score=62.67  Aligned_cols=29  Identities=24%  Similarity=0.240  Sum_probs=25.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .|+|.|+||+|||++++.||+.++.+++.
T Consensus         6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~   34 (186)
T 3cm0_A            6 AVIFLGPPGAGKGTQASRLAQELGFKKLS   34 (186)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence            58899999999999999999999976543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.00  E-value=0.0099  Score=58.23  Aligned_cols=23  Identities=30%  Similarity=0.345  Sum_probs=20.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -++|+||+|+|||+|++.++..+
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            47999999999999999998654

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.00  E-value=0.00035  Score=63.80  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=26.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      .-|+|.|+||+|||++|+.|++.++.+++..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~   43 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST   43 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence            3589999999999999999999999765443

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.99  E-value=0.00033  Score=64.62  Aligned_cols=31  Identities=35%  Similarity=0.441  Sum_probs=27.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH-hCCeEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE-CGTTFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e-l~~~fv~v  278 (577)
                      ..|+|+|+||||||++++.||+. +|++++.+
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~   42 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAELDGFQHLEV   42 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence            46899999999999999999999 78776543

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.98  E-value=0.00072  Score=83.99  Aligned_cols=37  Identities=16%  Similarity=0.066  Sum_probs=31.0

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcccc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLTS  285 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~~  285 (577)
                      -++|+|+||+|||+||..+|..+.   .++++++..+...
T Consensus       734 lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~  773 (2050)
T 3cmu_A          734 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD  773 (2050)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHH
Confidence            379999999999999999998874   4688888876544

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.97  E-value=0.0041  Score=58.31  Aligned_cols=52  Identities=12%  Similarity=0.089  Sum_probs=33.1

Q ss_pred             hhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCC
Q psy16204        401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN  455 (577)
Q Consensus       401 ~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~  455 (577)
                      ..++......+....+.+++||.+..+.....   ......++...|.......+
T Consensus       121 ~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~---~~~~~~~~~~~L~~~a~~~~  172 (251)
T 2zts_A          121 DNFLRYIYRVVKAINAKRLVIDSIPSIALRLE---EERKIREVLLKLNTILLEMG  172 (251)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS---SGGGHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEcHHHHhhhcc---ChHHHHHHHHHHHHHHHHcC
Confidence            34455555567788899999999998865322   23344556666666555443

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.96  E-value=0.0041  Score=64.32  Aligned_cols=35  Identities=14%  Similarity=0.107  Sum_probs=28.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      .-++|+||||+|||+||..++..+   +..+++++...
T Consensus        62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~   99 (349)
T 2zr9_A           62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH   99 (349)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            348999999999999999998765   56777777754

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.96  E-value=0.00046  Score=62.35  Aligned_cols=24  Identities=13%  Similarity=0.095  Sum_probs=22.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -|+|.|+||+|||++++.|++.++
T Consensus         5 ~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            5 VVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999987

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.95  E-value=0.00039  Score=62.82  Aligned_cols=29  Identities=21%  Similarity=0.201  Sum_probs=22.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFF  276 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv  276 (577)
                      .-|+|.|+||+|||++|+.|++.++.+++
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            46899999999999999999999999876

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.93  E-value=0.00063  Score=61.40  Aligned_cols=31  Identities=13%  Similarity=0.218  Sum_probs=27.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      .-|+|.|+||+|||++|+.|++.++.+++..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~   37 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA   37 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence            4689999999999999999999999776543

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.92  E-value=0.009  Score=58.79  Aligned_cols=33  Identities=15%  Similarity=0.155  Sum_probs=26.2

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh----CCeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC----GTTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s  281 (577)
                      -++|.||||+|||+|++.||..+    |.++++++..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e   73 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence            47899999999999999998765    4466666553

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.92  E-value=0.0006  Score=63.24  Aligned_cols=31  Identities=26%  Similarity=0.481  Sum_probs=27.2

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      +.-|+|.|++|+|||++|+.|++.+|..++.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~   48 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE   48 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence            3568999999999999999999999877654

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.92  E-value=0.00064  Score=60.69  Aligned_cols=29  Identities=10%  Similarity=0.185  Sum_probs=26.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .|+|.|++|+|||++|+.|++.++.+++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~   30 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD   30 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            47899999999999999999999988764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.91  E-value=0.00045  Score=64.48  Aligned_cols=30  Identities=13%  Similarity=0.150  Sum_probs=26.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      .|+|.|+||+|||++|+.|++.++.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   31 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST   31 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence            378999999999999999999998876543

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.90  E-value=0.00042  Score=72.82  Aligned_cols=74  Identities=11%  Similarity=0.012  Sum_probs=50.6

Q ss_pred             cCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEE------------------EecCcccc
Q psy16204        224 AGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFN------------------VSSSTLTS  285 (577)
Q Consensus       224 iG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~------------------v~~s~l~~  285 (577)
                      +..+...+.+...+..-+...+ ...++|+|++|+|||+++++||..++.+|+.                  ++....++
T Consensus         2 ~~~~~L~~~il~~l~~~i~~g~-~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~   80 (359)
T 2ga8_A            2 VDTHKLADDVLQLLDNRIEDNY-RVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLK   80 (359)
T ss_dssp             CCHHHHHHHHHHHHHHTTTTCS-CEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSE
T ss_pred             ccHHHHHHHHHHHHHHHhccCC-eeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHH
Confidence            3455666666666654443332 2478999999999999999999999988855                  55555555


Q ss_pred             ccccchHHHHHHHHHH
Q psy16204        286 KYRGESEKLVRLLFEM  301 (577)
Q Consensus       286 k~~G~~e~~vr~lF~~  301 (577)
                      ...|   ..+.++|+.
T Consensus        81 ~~~g---~~i~~if~~   93 (359)
T 2ga8_A           81 TLQP---NKVAEMIEN   93 (359)
T ss_dssp             ECCH---HHHHHHHHT
T ss_pred             HHhC---ccHHHHHHH
Confidence            5444   456667764

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.90  E-value=0.011  Score=59.61  Aligned_cols=33  Identities=21%  Similarity=0.018  Sum_probs=27.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      -+++.|+||+|||++|..+|..+   +.++++++..
T Consensus        70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE  105 (315)
T 3bh0_A           70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  105 (315)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            48999999999999999998664   3577777765

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.90  E-value=0.00043  Score=64.76  Aligned_cols=30  Identities=13%  Similarity=0.212  Sum_probs=26.0

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      .|+|.|+||+|||++|+.|++.++.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   31 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST   31 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence            378999999999999999999998776543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.90  E-value=0.00042  Score=61.98  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=22.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHH-HhCCe
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT-ECGTT  274 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~-el~~~  274 (577)
                      .-|+|.|+||+|||++|+.|++ .++..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~   30 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFY   30 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred             eEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence            3589999999999999999999 45543

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=96.90  E-value=0.0043  Score=62.39  Aligned_cols=26  Identities=12%  Similarity=-0.180  Sum_probs=23.0

Q ss_pred             ccceeEEecCCCCChHHHHHHHHHHh
Q psy16204        246 FFKEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       246 ~~k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +...+|||||+|.||++.++.|++.+
T Consensus        17 ~~~~yl~~G~e~~~~~~~~~~l~~~~   42 (343)
T 1jr3_D           17 LRAAYLLLGNDPLLLQESQDAVRQVA   42 (343)
T ss_dssp             CCSEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHHHH
Confidence            44689999999999999999999875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.89  E-value=0.0007  Score=63.77  Aligned_cols=31  Identities=13%  Similarity=0.108  Sum_probs=27.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      ..|+|.|+||+|||++|+.||+.++.+++..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   35 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT   35 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence            4689999999999999999999999876543

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.88  E-value=0.00046  Score=65.47  Aligned_cols=31  Identities=16%  Similarity=0.226  Sum_probs=27.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      .-|+|.|+||+|||++|+.||+.++.+++.+
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   38 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS   38 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence            4589999999999999999999999876543

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.86  E-value=0.00066  Score=68.60  Aligned_cols=26  Identities=27%  Similarity=0.169  Sum_probs=23.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      +++|||||||||||++|++||..++.
T Consensus       105 n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A          105 NTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            57999999999999999999998654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.84  E-value=0.00046  Score=62.93  Aligned_cols=36  Identities=28%  Similarity=0.306  Sum_probs=30.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      ..++|.||+|+|||++++.|+...+...+.++..++
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~   45 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL   45 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence            357899999999999999999987777777776543

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.83  E-value=0.011  Score=63.18  Aligned_cols=33  Identities=9%  Similarity=0.009  Sum_probs=27.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh----CCeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC----GTTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s  281 (577)
                      -+++.|+||+|||++|-.+|..+    |.++++++..
T Consensus       244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E  280 (503)
T 1q57_A          244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE  280 (503)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred             EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence            37999999999999999998775    4567777764

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.83  E-value=0.0037  Score=64.00  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=28.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~  282 (577)
                      -++|+||||+|||++|..+|..+         +...++++...
T Consensus       124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            47999999999999999999874         45777887764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.82  E-value=0.044  Score=55.30  Aligned_cols=92  Identities=17%  Similarity=0.059  Sum_probs=50.6

Q ss_pred             hhHHHHHhhhhcCCCchhhhHHHhhh-hhcCCCCCcccccCcHHHHHHHHHHHHCcCCC------ccccceeEEecCCCC
Q psy16204        186 RQDIREKIFYSTGFEPSLIETLEKDI-LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIM------PEFFKEALERHSHGT  258 (577)
Q Consensus       186 ~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~------~~~~k~ILL~GPpGt  258 (577)
                      .+++.+.+ ...++...+...+.+.+ ....+...++    .+.++..+.+.+..-+..      ......++|.||+|+
T Consensus        42 ~~~l~~~L-~~~dv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~g~vi~lvG~~Gs  116 (296)
T 2px0_A           42 LRKAEKLL-QETGIKESTKTNTLKKLLRFSVEAGGLT----EENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGA  116 (296)
T ss_dssp             HHHHHHHH-HHSCCCHHHHHHHHHHHHHHHHSSSCCC----TTTHHHHHHHHHHTTSCCGGGSCCCCCSSEEEEEESTTS
T ss_pred             HHHHHHHH-HHCCCCHHHHHHHHHHHHHHhhcccCCC----HHHHHHHHHHHHHHHhCCcccccccCCCcEEEEECCCCC
Confidence            44444443 34666666665554433 1211111111    144555565555332211      112346889999999


Q ss_pred             ChHHHHHHHHHHh----CCeEEEEecCc
Q psy16204        259 GKTMLAKAVATEC----GTTFFNVSSST  282 (577)
Q Consensus       259 GKT~LAkaLA~el----~~~fv~v~~s~  282 (577)
                      |||+++..||..+    |..+..+++..
T Consensus       117 GKTTl~~~LA~~l~~~~G~~V~lv~~D~  144 (296)
T 2px0_A          117 GKTTTLAKLAAISMLEKHKKIAFITTDT  144 (296)
T ss_dssp             SHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence            9999999999765    44666666543

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.78  E-value=0.0009  Score=61.04  Aligned_cols=29  Identities=17%  Similarity=0.348  Sum_probs=26.0

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      -|.|.|++|+|||++++.||+.++..++.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~   30 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYEIFK   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence            37899999999999999999999987653

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.78  E-value=0.001  Score=60.10  Aligned_cols=30  Identities=23%  Similarity=0.336  Sum_probs=26.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      ..++|.|++|+|||++++.|+..+|..++.
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~   38 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD   38 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence            458899999999999999999999876543

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.77  E-value=0.00095  Score=63.09  Aligned_cols=30  Identities=17%  Similarity=0.274  Sum_probs=26.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      .|+|.|+||+|||++|+.||+.++.+++.+
T Consensus         7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   36 (217)
T 3be4_A            7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST   36 (217)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence            589999999999999999999999877654

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.76  E-value=0.00061  Score=61.47  Aligned_cols=33  Identities=12%  Similarity=0.036  Sum_probs=26.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC---CeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG---TTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s  281 (577)
                      -|+|.|+||+|||++|+.|++.++   .++..++..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~   38 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG   38 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence            478999999999999999999886   234455443

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.74  E-value=0.0012  Score=59.72  Aligned_cols=31  Identities=23%  Similarity=0.036  Sum_probs=27.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---CCeEEEEe
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVS  279 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~  279 (577)
                      -|.|.|++|+|||++++.|++.+   |.+++..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d   35 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR   35 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            37899999999999999999998   88888765

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.74  E-value=0.0094  Score=61.36  Aligned_cols=35  Identities=20%  Similarity=0.186  Sum_probs=28.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCcc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG---------TTFFNVSSSTL  283 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~l  283 (577)
                      -++|+||+|+|||+|++.++..+.         ...++++..+.
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            478999999999999999998872         45677877543

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.74  E-value=0.0034  Score=65.23  Aligned_cols=35  Identities=20%  Similarity=0.187  Sum_probs=29.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      .-++|+|+||+|||+||..+|.++   +.++++++...
T Consensus        64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~  101 (356)
T 1u94_A           64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  101 (356)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            458999999999999999998765   56788888764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.72  E-value=0.00083  Score=63.35  Aligned_cols=29  Identities=10%  Similarity=0.138  Sum_probs=25.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFF  276 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv  276 (577)
                      ..|+|.|+||+|||++++.||+.++.+++
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i   34 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKYQLAHI   34 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence            46899999999999999999999997654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.69  E-value=0.001  Score=65.11  Aligned_cols=37  Identities=16%  Similarity=0.166  Sum_probs=30.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH---hCCeEEEEecCccc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE---CGTTFFNVSSSTLT  284 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e---l~~~fv~v~~s~l~  284 (577)
                      .-|+|.|+||+|||++|+.|++.   .|.+++.++...+.
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~   44 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR   44 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence            35899999999999999999998   78888867665443

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.68  E-value=0.0012  Score=62.11  Aligned_cols=30  Identities=13%  Similarity=0.111  Sum_probs=26.2

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      .|+|.|+||+|||++|+.|++.++.+++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~   31 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST   31 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence            378999999999999999999998776543

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.64  E-value=0.0029  Score=63.47  Aligned_cols=23  Identities=17%  Similarity=0.143  Sum_probs=20.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -++|+|+||+|||++|..+|..+
T Consensus       100 i~~i~G~~gsGKT~la~~la~~~  122 (322)
T 2i1q_A          100 VTEFAGVFGSGKTQIMHQSCVNL  122 (322)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47999999999999999999864

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.64  E-value=0.028  Score=59.36  Aligned_cols=33  Identities=21%  Similarity=0.127  Sum_probs=27.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh----CCeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC----GTTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s  281 (577)
                      -+++.|+||+|||++|..+|..+    +.++++++..
T Consensus       202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE  238 (444)
T 2q6t_A          202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE  238 (444)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            47999999999999999888654    4577777774

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.63  E-value=0.0014  Score=61.02  Aligned_cols=34  Identities=29%  Similarity=0.496  Sum_probs=27.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      .-+.|.||+|+|||++++.|+..+|..+  ++..++
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~   63 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF   63 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence            4588999999999999999999997654  444443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.63  E-value=0.004  Score=56.95  Aligned_cols=20  Identities=30%  Similarity=0.272  Sum_probs=17.5

Q ss_pred             eeEEecCCCCChHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA  268 (577)
                      -+.|.||+|+|||+|++++.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            37899999999999999743

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.63  E-value=0.002  Score=62.46  Aligned_cols=31  Identities=10%  Similarity=0.051  Sum_probs=27.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      ..|+|.||||+|||++|+.|++.++.+++.+
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~   60 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST   60 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence            5689999999999999999999998766543

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.62  E-value=0.0014  Score=62.93  Aligned_cols=32  Identities=28%  Similarity=0.319  Sum_probs=26.8

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      |+|.||||+||++.|+.||+.+|.+.  ++..++
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdl   34 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDI   34 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHH
Confidence            68899999999999999999998765  444443

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.61  E-value=0.0015  Score=61.15  Aligned_cols=29  Identities=24%  Similarity=0.243  Sum_probs=25.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .|.|.||+|+|||++++.|++.+|++++.
T Consensus         7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d   35 (227)
T 1cke_A            7 VITIDGPSGAGKGTLCKAMAEALQWHLLD   35 (227)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence            58899999999999999999999977653

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.60  E-value=0.00099  Score=61.60  Aligned_cols=30  Identities=17%  Similarity=0.217  Sum_probs=26.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      .|.|.|++|+|||++++.|++ +|++++..+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d   32 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD   32 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence            478999999999999999999 887776543

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.57  E-value=0.0016  Score=62.06  Aligned_cols=29  Identities=17%  Similarity=0.212  Sum_probs=25.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      -|+|.|+||+|||++|+.|++.++.+++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~   30 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE   30 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence            37899999999999999999999876543

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.55  E-value=0.0016  Score=67.40  Aligned_cols=35  Identities=26%  Similarity=0.220  Sum_probs=31.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      +.|+|.||+|||||+||+.||+.++..++.++.-.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q   40 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL   40 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence            46899999999999999999999998888887643

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.54  E-value=0.002  Score=58.59  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=30.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      .-+.|.|++|+|||++++.|+..+   |.+++.++...
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~   43 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN   43 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence            347899999999999999999998   89998887543

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.53  E-value=0.0018  Score=63.00  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=27.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      +-|+|.||||+||++.|+.||+.++.+.  ++..++
T Consensus        30 kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdl   63 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDL   63 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHH
Confidence            5688999999999999999999998764  444443

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.50  E-value=0.019  Score=60.80  Aligned_cols=33  Identities=18%  Similarity=0.115  Sum_probs=26.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh----CCeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC----GTTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s  281 (577)
                      -+++.|+||+|||++|..+|..+    |.++++++..
T Consensus       205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E  241 (454)
T 2r6a_A          205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE  241 (454)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            47999999999999999988754    4577777764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.49  E-value=0.0019  Score=59.26  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=26.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      .|.|.|++|+|||++++.||+.+|.+++..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~   33 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSS   33 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence            578999999999999999999999876543

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.43  E-value=0.00048  Score=73.34  Aligned_cols=65  Identities=11%  Similarity=-0.015  Sum_probs=59.6

Q ss_pred             eeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhh
Q psy16204        315 YLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVA  379 (577)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (577)
                      .+..+++..|++++|....+.++++.+.++-.++.-+...|..+|.|++.|+||||||+..+.+.
T Consensus       138 ~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAi  202 (405)
T 4b4t_J          138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAV  202 (405)
T ss_dssp             EEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHH
T ss_pred             cccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999885433

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=96.39  E-value=0.032  Score=53.88  Aligned_cols=33  Identities=27%  Similarity=0.238  Sum_probs=28.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      .+|++||+|+|||.+|-+++..++.+.+.+-..
T Consensus       110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~  142 (237)
T 2fz4_A          110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT  142 (237)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence            589999999999999999999987777666554

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.37  E-value=0.0018  Score=59.47  Aligned_cols=32  Identities=13%  Similarity=0.048  Sum_probs=27.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh-CCeEEEEe
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC-GTTFFNVS  279 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el-~~~fv~v~  279 (577)
                      .-|.|.|++|+|||++++.|++.+ |.+++.+.
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~   37 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN   37 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence            358899999999999999999998 57777654

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.34  E-value=0.0039  Score=65.97  Aligned_cols=59  Identities=17%  Similarity=0.257  Sum_probs=39.3

Q ss_pred             HHhhhhhcCCCCCccccc-CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204        207 LEKDILQNNPNVQWNKVA-GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       207 ~~~~~~~~~~~v~~~dIi-G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+++|..++.+..++++- +|..+...+...+..+-      ..+|+.|+||||||+++.+++..+
T Consensus        10 ~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~------~~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           10 HSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK------HHVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             -----------CCSSCCCHHHHHHHHHHHHHHHSSS------CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCC------CEEEEEeCCCCCHHHHHHHHHHHH
Confidence            345788888889999886 78888887777765421      278999999999999999999876

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.33  E-value=0.0021  Score=58.93  Aligned_cols=26  Identities=15%  Similarity=0.010  Sum_probs=23.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      -|+|.|+||+|||++|+.|++.++..
T Consensus         6 ~I~i~G~~GsGKsT~~~~L~~~l~~~   31 (213)
T 2plr_A            6 LIAFEGIDGSGKSSQATLLKDWIELK   31 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            57899999999999999999998863

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.33  E-value=0.013  Score=61.89  Aligned_cols=120  Identities=16%  Similarity=0.175  Sum_probs=70.9

Q ss_pred             CeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEe---------cC---CchhhHHHhhcC
Q psy16204        416 PSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAA---------TN---HPYQLLTLCLEG  483 (577)
Q Consensus       416 p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIat---------TN---~p~~L~~allrr  483 (577)
                      |.|+||||+|.|..            ..++.||..|+....      +++|++|         ++   .|..|++.++.|
T Consensus       296 ~~VliIDEa~~l~~------------~a~~aLlk~lEe~~~------~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR  357 (456)
T 2c9o_A          296 PGVLFVDEVHMLDI------------ECFTYLHRALESSIA------PIVIFASNRGNCVIRGTEDITSPHGIPLDLLDR  357 (456)
T ss_dssp             ECEEEEESGGGCBH------------HHHHHHHHHTTSTTC------CEEEEEECCSEEECBTTSSCEEETTCCHHHHTT
T ss_pred             ceEEEEechhhcCH------------HHHHHHHHHhhccCC------CEEEEecCCccccccccccccccccCChhHHhh
Confidence            36999999999964            578999999986542      3555565         33   266677777777


Q ss_pred             cccc--cccCHHHHHHHc--------CCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHH
Q psy16204        484 VVID--VNLDFHKISKML--------EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIA  553 (577)
Q Consensus       484 ~~i~--~~vdl~~LA~~t--------~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~  553 (577)
                      +.+.  ..++.+++.+..        ..++...+..+++.|+....|..+.-..  ....+........|+.+|+++|+.
T Consensus       358 ~~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~--~a~~~A~~~~~~~v~~~~v~~~~~  435 (456)
T 2c9o_A          358 VMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLT--PANLLAKINGKDSIEKEHVEEISE  435 (456)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHH--HHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             cceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHH--HHHHHHhhcCCCccCHHHHHHHHH
Confidence            6542  123333333322        1456666666665553444454432111  111122222345799999999998


Q ss_pred             Hh
Q psy16204        554 RC  555 (577)
Q Consensus       554 ~~  555 (577)
                      -+
T Consensus       436 ~~  437 (456)
T 2c9o_A          436 LF  437 (456)
T ss_dssp             HS
T ss_pred             Hh
Confidence            75

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.29  E-value=0.0023  Score=59.37  Aligned_cols=28  Identities=21%  Similarity=0.259  Sum_probs=24.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .|.|.|++|+|||++++.|+. +|.+++.
T Consensus         4 ~i~l~G~~GsGKST~~~~La~-lg~~~id   31 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD   31 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence            478999999999999999998 8887653

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.28  E-value=0.13  Score=52.25  Aligned_cols=88  Identities=18%  Similarity=0.189  Sum_probs=47.9

Q ss_pred             hhHHHHHhhhhcCCCchhhhHHHhhhhhcCCCCCcccccCcHHHHHHHHHHHHC--cCCC-ccccceeEEecCCCCChHH
Q psy16204        186 RQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQWNKVAGLTEAKAILQEAMVL--PTIM-PEFFKEALERHSHGTGKTM  262 (577)
Q Consensus       186 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~--pl~~-~~~~k~ILL~GPpGtGKT~  262 (577)
                      .++++..+ ...++...+...+-+.+-.    ..- +  -..-..+.|.+.+..  |+.. .....-++|.||+|+|||+
T Consensus        48 ~~~l~~~L-~~~dv~~~~~~~~~~~~~~----~~~-~--~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTT  119 (306)
T 1vma_A           48 REELEELL-IQADVGVETTEYILERLEE----KDG-D--ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTT  119 (306)
T ss_dssp             HHHHHHHH-HHTTCCHHHHHHHHHHHTT----CCS-C--HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHH
T ss_pred             HHHHHHHH-HHCCCCHHHHHHHHHHHHh----cCH-H--HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHH
Confidence            44444443 3466777766655444322    111 1  122334444444422  1111 1123458899999999999


Q ss_pred             HHHHHHHHh---CCeEEEEecC
Q psy16204        263 LAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       263 LAkaLA~el---~~~fv~v~~s  281 (577)
                      ++..||..+   +..+..+++.
T Consensus       120 l~~~LA~~l~~~g~kV~lv~~D  141 (306)
T 1vma_A          120 SCGKLAKMFVDEGKSVVLAAAD  141 (306)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEC
T ss_pred             HHHHHHHHHHhcCCEEEEEccc
Confidence            999999765   4555555554

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.27  E-value=0.0025  Score=59.37  Aligned_cols=36  Identities=19%  Similarity=0.217  Sum_probs=28.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      .-+.|.||+|+|||+++++||..+   |...+.++..++
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~   64 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV   64 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence            457899999999999999999998   555456665444

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.23  E-value=0.0027  Score=60.94  Aligned_cols=29  Identities=21%  Similarity=0.320  Sum_probs=25.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFF  276 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv  276 (577)
                      .-++|.||+|+|||++++.|++.+|...+
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~   56 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL   56 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence            46899999999999999999999987543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.21  E-value=0.0011  Score=61.25  Aligned_cols=29  Identities=14%  Similarity=0.013  Sum_probs=24.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFF  276 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv  276 (577)
                      .-|+|.|++|+|||++++.|++.++.+++
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~   39 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNV   39 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999875443

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=96.20  E-value=0.033  Score=63.35  Aligned_cols=22  Identities=18%  Similarity=0.042  Sum_probs=18.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .+++.||+|+|||+++..+...
T Consensus       111 ~vii~gpTGSGKTtllp~ll~~  132 (773)
T 2xau_A          111 IMVFVGETGSGKTTQIPQFVLF  132 (773)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999977776544

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.17  E-value=0.0084  Score=62.47  Aligned_cols=34  Identities=6%  Similarity=-0.070  Sum_probs=27.8

Q ss_pred             eEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCcc
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSSTL  283 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~l  283 (577)
                      ++++||||+|||+||-.++.++     +..+++++...-
T Consensus        31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s   69 (333)
T 3io5_A           31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG   69 (333)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence            7999999999999988777654     567888887643

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.14  E-value=0.044  Score=58.38  Aligned_cols=33  Identities=21%  Similarity=0.018  Sum_probs=27.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      -+++.|+||+|||++|-.+|..+   |.++++++..
T Consensus       199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE  234 (444)
T 3bgw_A          199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  234 (444)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence            37999999999999999888765   5678887765

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.11  E-value=0.0032  Score=57.51  Aligned_cols=29  Identities=17%  Similarity=0.155  Sum_probs=25.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      ..|.|.|++|+|||++++.||+. |.+++.
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id   37 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW-GYPVLD   37 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence            46889999999999999999998 877654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.08  E-value=0.0042  Score=61.49  Aligned_cols=31  Identities=32%  Similarity=0.471  Sum_probs=28.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      ..|.|.|++|+|||++++.||..++.+|+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~   79 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC   79 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence            4689999999999999999999999987664

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.05  E-value=0.0034  Score=59.60  Aligned_cols=30  Identities=23%  Similarity=0.298  Sum_probs=26.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      -|.|.|++|||||++++.|++.+|++++..
T Consensus        14 iIgltG~~GSGKSTva~~L~~~lg~~vid~   43 (192)
T 2grj_A           14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV   43 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence            478999999999999999999999887553

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.04  E-value=0.0047  Score=57.62  Aligned_cols=29  Identities=24%  Similarity=0.342  Sum_probs=26.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .|.|.|++|+|||++++.|++.+|.+++.
T Consensus         5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~   33 (219)
T 2h92_A            5 NIALDGPAAAGKSTIAKRVASELSMIYVD   33 (219)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence            57899999999999999999999987654

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.04  E-value=0.0045  Score=60.98  Aligned_cols=30  Identities=20%  Similarity=0.388  Sum_probs=26.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      ..+.|.||+|+|||++++.||+.++.+++.
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d   39 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARALGARYLD   39 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence            468899999999999999999999977643

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.03  E-value=0.0016  Score=60.11  Aligned_cols=27  Identities=7%  Similarity=0.064  Sum_probs=23.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .-|+|.|++|+|||++++.|++.++..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~   36 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEALCAA   36 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            458999999999999999999987543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.03  E-value=0.0047  Score=59.74  Aligned_cols=38  Identities=11%  Similarity=0.074  Sum_probs=31.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCe--------EEEEecCcccc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTT--------FFNVSSSTLTS  285 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~--------fv~v~~s~l~~  285 (577)
                      .-|.|.|++|+|||++|+.|++.++.+        ++.++..++..
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~   68 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR   68 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence            458899999999999999999999976        34677777643

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.02  E-value=0.0025  Score=66.49  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=30.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      +-|+|.||+|||||+|+..||+.++..++..+.-
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            4688999999999999999999999888776665

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.99  E-value=0.03  Score=54.74  Aligned_cols=32  Identities=9%  Similarity=-0.044  Sum_probs=24.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---CCeEEEEec
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSS  280 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~  280 (577)
                      -++++|++|+|||+++..++..+   +..++.+..
T Consensus        14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~   48 (223)
T 2b8t_A           14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKP   48 (223)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEe
Confidence            36889999999999999888776   455555543

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.98  E-value=0.0049  Score=57.73  Aligned_cols=29  Identities=24%  Similarity=0.313  Sum_probs=25.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      -|.|.|++|+|||++++.|++ +|.+++..
T Consensus         6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id~   34 (218)
T 1vht_A            6 IVALTGGIGSGKSTVANAFAD-LGINVIDA   34 (218)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence            578999999999999999998 88876554

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.98  E-value=0.031  Score=58.94  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=20.4

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +.|.||.|||||+|.|.||.-..
T Consensus        32 ~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           32 VVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEcCCCchHHHHHHHHHcCCC
Confidence            67999999999999999997653

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.97  E-value=0.0051  Score=59.92  Aligned_cols=29  Identities=24%  Similarity=0.242  Sum_probs=26.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFF  276 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv  276 (577)
                      ..|.|.||+|+|||++++.||+.+|..++
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~   56 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESLNWRLL   56 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence            35789999999999999999999998765

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.94  E-value=0.046  Score=57.16  Aligned_cols=64  Identities=14%  Similarity=0.220  Sum_probs=37.6

Q ss_pred             hhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204        402 RINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLC  480 (577)
Q Consensus       402 ~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~al  480 (577)
                      ..-+-+|.+|-...|.||++||--.-.       +......+...|........        +-+|..|...+.+...+
T Consensus       143 q~QRValArAL~~~P~lLLLDEPts~L-------D~~~r~~l~~~l~~~~~~~g--------~tvi~vTHd~~ea~~~a  206 (359)
T 3fvq_A          143 QQQRAALARALAPDPELILLDEPFSAL-------DEQLRRQIREDMIAALRANG--------KSAVFVSHDREEALQYA  206 (359)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTS-------CHHHHHHHHHHHHHHHHHTT--------CEEEEECCCHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccC-------CHHHHHHHHHHHHHHHHhCC--------CEEEEEeCCHHHHHHHC
Confidence            344445666778899999999953221       12333344445555444332        35677787777665543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.89  E-value=0.042  Score=57.49  Aligned_cols=22  Identities=23%  Similarity=0.181  Sum_probs=20.0

Q ss_pred             eEEecCCCCChHHHHHHHHHHh
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +.|.||.|||||+|.|.||.-.
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           32 MILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCcHHHHHHHHHHcCC
Confidence            6799999999999999999665

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.88  E-value=0.036  Score=58.11  Aligned_cols=23  Identities=22%  Similarity=0.140  Sum_probs=20.4

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +.|.||.|||||+|.|.||.-..
T Consensus        40 ~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           40 LVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCChHHHHHHHHHcCCC
Confidence            67999999999999999997653

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.87  E-value=0.0055  Score=56.00  Aligned_cols=34  Identities=18%  Similarity=0.064  Sum_probs=26.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG---TTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s  281 (577)
                      .-|+|.|++|+|||++++.||..++   ..+..++..
T Consensus        14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d   50 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD   50 (186)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence            4588999999999999999999874   445555543

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.87  E-value=0.0063  Score=58.17  Aligned_cols=30  Identities=23%  Similarity=0.398  Sum_probs=26.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      ..|.|.|++|+|||++++.||+.+|.+++.
T Consensus        17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d   46 (236)
T 1q3t_A           17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLD   46 (236)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence            358899999999999999999999987653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.86  E-value=0.011  Score=61.31  Aligned_cols=23  Identities=22%  Similarity=0.182  Sum_probs=20.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+++.||+|+|||++.++++..+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            48999999999999999998765

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.85  E-value=0.091  Score=51.70  Aligned_cols=24  Identities=17%  Similarity=0.061  Sum_probs=20.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.|.||.|+|||+|.+.|+....
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            367999999999999999997653

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.85  E-value=0.013  Score=58.37  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=20.0

Q ss_pred             eEEecCCCCChHHHHHHHHHHh
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +.|.||.|+|||+|+++|+.-.
T Consensus        40 ~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           40 VAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            6799999999999999999765

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=95.85  E-value=0.25  Score=45.74  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=19.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +.+++.+|+|+|||..+-..+-..
T Consensus        52 ~~~li~~~TGsGKT~~~~~~~~~~   75 (220)
T 1t6n_A           52 MDVLCQAKSGMGKTAVFVLATLQQ   75 (220)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCchhhhhhHHHHHh
Confidence            469999999999998776655544

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.84  E-value=0.013  Score=60.75  Aligned_cols=33  Identities=15%  Similarity=0.028  Sum_probs=27.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      -+++.|+||+|||++|..+|..+   +.++.+++..
T Consensus        48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE   83 (338)
T 4a1f_A           48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE   83 (338)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            47999999999999999998764   6777777764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.84  E-value=0.0065  Score=55.53  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=21.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      -++|.||+|+|||++++.|+...+.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~~~g   28 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQLDN   28 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcccCC
Confidence            4689999999999999999986554

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.84  E-value=0.0047  Score=60.58  Aligned_cols=29  Identities=24%  Similarity=0.251  Sum_probs=24.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh-CCeEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC-GTTFF  276 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el-~~~fv  276 (577)
                      .-|+|.|+||+|||++|+.|++.+ +..++
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i   32 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI   32 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence            358999999999999999999974 65544

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=95.79  E-value=0.044  Score=52.98  Aligned_cols=33  Identities=24%  Similarity=0.155  Sum_probs=26.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      .|++|+++|.|||++|-.+|-.+   |..+..+..-
T Consensus        30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~   65 (196)
T 1g5t_A           30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFI   65 (196)
T ss_dssp             CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence            58999999999999999988664   6666666543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.77  E-value=0.099  Score=51.67  Aligned_cols=24  Identities=21%  Similarity=0.080  Sum_probs=20.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.|.||.|+|||+|++.|+.-..
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            368999999999999999987653

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.74  E-value=0.0052  Score=63.58  Aligned_cols=35  Identities=23%  Similarity=0.208  Sum_probs=30.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      +-+++.||+|||||+||..||+.++..++.+++-.
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q   45 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKILPVELISVDSAL   45 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred             cEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence            45789999999999999999999998887776643

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.74  E-value=0.0051  Score=57.37  Aligned_cols=25  Identities=28%  Similarity=0.266  Sum_probs=22.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +-++|.||+|+|||++++.|++.++
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCc
Confidence            3578999999999999999999875

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=95.74  E-value=0.0064  Score=57.73  Aligned_cols=29  Identities=17%  Similarity=0.315  Sum_probs=26.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      -|.|.|++|||||++++.||+.+|.+|+.
T Consensus         8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D   36 (201)
T 3fdi_A            8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS   36 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence            57899999999999999999999999874

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.67  E-value=0.006  Score=63.55  Aligned_cols=33  Identities=21%  Similarity=0.123  Sum_probs=28.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSS  280 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~  280 (577)
                      .-|++.||+|+|||+||+.||+.++..++..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds   40 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS   40 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence            358899999999999999999999976665554

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.62  E-value=0.1  Score=54.49  Aligned_cols=22  Identities=23%  Similarity=0.169  Sum_probs=19.9

Q ss_pred             eEEecCCCCChHHHHHHHHHHh
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +.|.||.|||||+|.|.||.-.
T Consensus        44 ~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           44 VGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6799999999999999999654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.61  E-value=0.027  Score=52.52  Aligned_cols=35  Identities=17%  Similarity=0.077  Sum_probs=28.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      .-+.+.|++|+|||++++.|+..+   +.+++.++...
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~   60 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence            457899999999999999999876   66666665543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.60  E-value=0.084  Score=52.46  Aligned_cols=24  Identities=13%  Similarity=0.166  Sum_probs=20.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.|.||.|+|||+|++.|+.-+.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Confidence            367999999999999999997653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.55  E-value=0.066  Score=55.94  Aligned_cols=23  Identities=22%  Similarity=0.177  Sum_probs=20.4

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +.|.||.|||||+|.|.||.-..
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           32 MALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCchHHHHHHHHhcCCC
Confidence            67999999999999999997653

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.53  E-value=0.065  Score=55.93  Aligned_cols=22  Identities=23%  Similarity=0.080  Sum_probs=20.0

Q ss_pred             eEEecCCCCChHHHHHHHHHHh
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +.|.||.|||||+|.|.||.-.
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           32 VALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCchHHHHHHHHHCCC
Confidence            6799999999999999999765

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.53  E-value=0.01  Score=58.96  Aligned_cols=29  Identities=17%  Similarity=0.202  Sum_probs=25.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .-|.|.|++|+|||++|+.|+ .+|++++.
T Consensus        76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id  104 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLK-NLGAYIID  104 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence            468999999999999999999 68877644

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.51  E-value=0.13  Score=49.05  Aligned_cols=21  Identities=24%  Similarity=0.276  Sum_probs=17.4

Q ss_pred             ceeEEecCCCCChHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA  268 (577)
                      +.+++.||+|+|||++...+.
T Consensus        77 ~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           77 SVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEeCCCCCcHHhHHHHH
Confidence            468999999999998776554

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.51  E-value=0.0059  Score=56.71  Aligned_cols=29  Identities=21%  Similarity=0.156  Sum_probs=24.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh-CCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC-GTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el-~~~fv~  277 (577)
                      -+.+.|++|+|||++++.|+..+ ++.++.
T Consensus        23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~   52 (207)
T 2qt1_A           23 IIGISGVTNSGKTTLAKNLQKHLPNCSVIS   52 (207)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence            47899999999999999999987 554443

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.50  E-value=0.0062  Score=63.17  Aligned_cols=33  Identities=15%  Similarity=0.016  Sum_probs=28.2

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      -|++.||+|||||+||..||+.++..++..++-
T Consensus         5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             EEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            478999999999999999999998777665544

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.48  E-value=0.0089  Score=56.05  Aligned_cols=34  Identities=12%  Similarity=0.114  Sum_probs=27.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC----CeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG----TTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~----~~fv~v~~s  281 (577)
                      .-|+|.|++|+|||++++.|+..++    .+++.++..
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d   63 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD   63 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence            4578999999999999999998764    557777643

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.47  E-value=0.05  Score=56.48  Aligned_cols=22  Identities=23%  Similarity=0.119  Sum_probs=19.9

Q ss_pred             eEEecCCCCChHHHHHHHHHHh
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +.|.||.|||||+|.|.||.-.
T Consensus        34 ~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           34 FGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6799999999999999999654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.46  E-value=0.19  Score=52.76  Aligned_cols=23  Identities=22%  Similarity=0.117  Sum_probs=20.3

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +.|.||.|+|||+|+|+|+.-..
T Consensus        57 ~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           57 YGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEcCCCchHHHHHHHHhcCCC
Confidence            67999999999999999997553

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.43  E-value=0.0025  Score=68.44  Aligned_cols=64  Identities=8%  Similarity=-0.112  Sum_probs=58.7

Q ss_pred             eeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchh
Q psy16204        315 YLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMV  378 (577)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (577)
                      .+...++..|++++|....+.++.+.+.++-.++.-+...|..+|.|++.|+||||||+..+.+
T Consensus       171 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkA  234 (437)
T 4b4t_L          171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKA  234 (437)
T ss_dssp             EEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHH
T ss_pred             eeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHH
Confidence            5567888999999999999999999999999999999999999999999999999999988543

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.31  E-value=0.0028  Score=67.88  Aligned_cols=62  Identities=10%  Similarity=-0.018  Sum_probs=56.6

Q ss_pred             eccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcch
Q psy16204        316 LVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSM  377 (577)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (577)
                      +...++..|.+++|....+.++.+.++++-.++..+...|..+|-|++.|+||||||+..+.
T Consensus       172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAk  233 (434)
T 4b4t_M          172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLAR  233 (434)
T ss_dssp             EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHH
T ss_pred             cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHH
Confidence            34567789999999999999999999999999999999999999999999999999998744

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.31  E-value=0.016  Score=54.32  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=22.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .-+.|.||+|+|||+|++.|+..+.
T Consensus        23 ~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           23 QLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4578999999999999999999875

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.31  E-value=0.0088  Score=54.90  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=21.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.|.||+|+|||+|++.|+..+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            578999999999999999998764

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.29  E-value=0.0029  Score=68.59  Aligned_cols=61  Identities=13%  Similarity=-0.021  Sum_probs=55.9

Q ss_pred             ccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcch
Q psy16204        317 VGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSM  377 (577)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (577)
                      ...++..|.+++|....+.++.+.+.++-.++..+...|..+|-|+++|+++|+||+..+.
T Consensus       201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAk  261 (467)
T 4b4t_H          201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCAR  261 (467)
T ss_dssp             ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHH
T ss_pred             cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999999997744

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.26  E-value=0.017  Score=71.19  Aligned_cols=33  Identities=21%  Similarity=0.169  Sum_probs=26.1

Q ss_pred             eEEecCCCCChHHHHHHHHHH-h--CCeEEEEecCc
Q psy16204        250 ALERHSHGTGKTMLAKAVATE-C--GTTFFNVSSST  282 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~e-l--~~~fv~v~~s~  282 (577)
                      |++|||+|+|||+||-.++.+ +  |.....++...
T Consensus      1434 iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~ 1469 (1706)
T 3cmw_A         1434 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1469 (1706)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            899999999999999866543 3  56777777764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.24  E-value=0.0067  Score=63.78  Aligned_cols=30  Identities=17%  Similarity=0.230  Sum_probs=25.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .-|+|.|+||+|||++|+.|++.++..++.
T Consensus       259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i~  288 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHVN  288 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence            458899999999999999999999876543

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.23  E-value=0.0033  Score=67.66  Aligned_cols=62  Identities=10%  Similarity=-0.030  Sum_probs=57.1

Q ss_pred             eccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcch
Q psy16204        316 LVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSM  377 (577)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (577)
                      +...++..|.+++|....+.++.+.+.++-..+.-+...|..+|.|+++|+|||+||+..+.
T Consensus       173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAk  234 (437)
T 4b4t_I          173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAK  234 (437)
T ss_dssp             EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHH
T ss_pred             eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999998744

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.23  E-value=0.0095  Score=54.56  Aligned_cols=23  Identities=17%  Similarity=0.187  Sum_probs=21.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||+|+|||++++.|+..+
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            47899999999999999999876

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=95.23  E-value=0.054  Score=51.47  Aligned_cols=19  Identities=26%  Similarity=0.354  Sum_probs=15.8

Q ss_pred             ceeEEecCCCCChHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKA  266 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAka  266 (577)
                      +.+|+.+|+|+|||..+-.
T Consensus        68 ~~~li~apTGsGKT~~~~l   86 (237)
T 3bor_A           68 YDVIAQAQSGTGKTATFAI   86 (237)
T ss_dssp             CCEEECCCSSHHHHHHHHH
T ss_pred             CCEEEECCCCCcHHHHHHH
Confidence            4699999999999987543

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.22  E-value=0.029  Score=60.89  Aligned_cols=25  Identities=20%  Similarity=0.179  Sum_probs=21.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ..++|+|++|+|||+|+..|+....
T Consensus       152 q~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          152 GKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCccHHHHHHHhhhh
Confidence            3589999999999999998887643

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.17  E-value=0.01  Score=54.34  Aligned_cols=31  Identities=26%  Similarity=0.282  Sum_probs=24.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      -+.|.||+|+|||+|++.|+..+.  -+.+...
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~   39 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKALA--EIKISIS   39 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSS--SEEECCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhhCC--CeEEece
Confidence            467999999999999999998853  3444443

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.17  E-value=0.011  Score=54.84  Aligned_cols=24  Identities=33%  Similarity=0.297  Sum_probs=22.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.|.||+|+|||+|++.|+..++
T Consensus         8 ~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            8 VIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999987

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=95.13  E-value=0.15  Score=47.38  Aligned_cols=24  Identities=29%  Similarity=0.292  Sum_probs=17.7

Q ss_pred             ceeEEecCCCCChHHHH-HHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLA-KAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LA-kaLA~el  271 (577)
                      +.+++.+|+|+|||..+ -.+...+
T Consensus        52 ~~~lv~~pTGsGKT~~~~~~~l~~l   76 (224)
T 1qde_A           52 HDVLAQAQSGTGKTGTFSIAALQRI   76 (224)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEECCCCCcHHHHHHHHHHHHH
Confidence            46999999999999873 3444433

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.10  E-value=0.0094  Score=56.10  Aligned_cols=25  Identities=20%  Similarity=0.154  Sum_probs=22.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .-+.|.||+|+|||+|++.|+..+.
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3578999999999999999998875

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.06  E-value=0.045  Score=57.77  Aligned_cols=23  Identities=22%  Similarity=0.114  Sum_probs=20.2

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||.|||||+|.|.|+.-.
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTCS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            37899999999999999999643

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=95.05  E-value=0.57  Score=46.91  Aligned_cols=22  Identities=32%  Similarity=0.395  Sum_probs=17.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      +.+++.+|+|+|||..+-..+-
T Consensus        59 ~~~li~a~TGsGKT~~~~~~~~   80 (400)
T 1s2m_A           59 RDILARAKNGTGKTAAFVIPTL   80 (400)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEECCCCcHHHHHHHHHHH
Confidence            4689999999999987654443

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=94.93  E-value=0.017  Score=56.15  Aligned_cols=29  Identities=24%  Similarity=0.446  Sum_probs=26.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      -|.+.|++|||||++|+.||+.+|++|+.
T Consensus        16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d   44 (223)
T 3hdt_A           16 IITIEREYGSGGRIVGKKLAEELGIHFYD   44 (223)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence            57899999999999999999999999854

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.93  E-value=0.0072  Score=55.78  Aligned_cols=25  Identities=16%  Similarity=0.170  Sum_probs=22.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      -|.|.|++|+|||++++.|++.++.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            3689999999999999999999863

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.91  E-value=0.004  Score=66.56  Aligned_cols=63  Identities=8%  Similarity=-0.098  Sum_probs=57.0

Q ss_pred             eccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchh
Q psy16204        316 LVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMV  378 (577)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (577)
                      +...++..|.+++|....+.++.+.+.++-..+.-+...|..+|-|++.|||||+||+..+.+
T Consensus       163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakA  225 (428)
T 4b4t_K          163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKA  225 (428)
T ss_dssp             EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHH
T ss_pred             CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHH
Confidence            456678999999999999999999999999999999999999999999999999999988543

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=94.76  E-value=0.2  Score=46.54  Aligned_cols=20  Identities=25%  Similarity=0.243  Sum_probs=16.3

Q ss_pred             ceeEEecCCCCChHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAV  267 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaL  267 (577)
                      +.+++.+|+|+|||..+-..
T Consensus        42 ~~~lv~a~TGsGKT~~~~~~   61 (219)
T 1q0u_A           42 ESMVGQSQTGTGKTHAYLLP   61 (219)
T ss_dssp             CCEEEECCSSHHHHHHHHHH
T ss_pred             CCEEEECCCCChHHHHHHHH
Confidence            47899999999999875433

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.74  E-value=0.016  Score=61.90  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=27.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSS  280 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~  280 (577)
                      -|++.||+|+|||+||..||+.++..++..+.
T Consensus         4 ~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             EEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            47899999999999999999999987766544

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=94.70  E-value=0.32  Score=48.49  Aligned_cols=18  Identities=28%  Similarity=0.386  Sum_probs=15.4

Q ss_pred             ceeEEecCCCCChHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAK  265 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAk  265 (577)
                      +.+|+.+|+|+|||...-
T Consensus       132 ~~~l~~a~TGsGKT~a~~  149 (300)
T 3fmo_B          132 QNLIAQSQSGTGKTAAFV  149 (300)
T ss_dssp             CCEEEECCTTSSHHHHHH
T ss_pred             CeEEEECCCCCCccHHHH
Confidence            579999999999998643

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.70  E-value=0.25  Score=53.23  Aligned_cols=145  Identities=14%  Similarity=0.127  Sum_probs=0.0

Q ss_pred             eEEecCCCCChHHHHHH--HHHHh--CCeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCC
Q psy16204        250 ALERHSHGTGKTMLAKA--VATEC--GTTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPT  325 (577)
Q Consensus       250 ILL~GPpGtGKT~LAka--LA~el--~~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~  325 (577)
                      ++|.||+|+|||+|++.  ++...  +..-++++..+        ....+......                        
T Consensus        42 ~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~--------~~~~~~~~~~~------------------------   89 (525)
T 1tf7_A           42 TLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE--------TPQDIIKNARS------------------------   89 (525)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--------CHHHHHHHHGG------------------------
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC--------CHHHHHHHHHH------------------------


Q ss_pred             ccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhh----hcccCCCCcccCCCC--c
Q psy16204        326 TTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVAT----HFTWGKKGTCQSHEG--H  399 (577)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--d  399 (577)
                                                                     --|..+.....    .+.+.........+.  +
T Consensus        90 -----------------------------------------------~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~  122 (525)
T 1tf7_A           90 -----------------------------------------------FGWDLAKLVDEGKLFILDASPDPEGQEVVGGFD  122 (525)
T ss_dssp             -----------------------------------------------GTCCHHHHHHTTSEEEEECCCCSSCCSCCSSHH
T ss_pred             -----------------------------------------------cCCChHHhhccCcEEEEecCcccchhhhhcccC


Q ss_pred             chhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhh---
Q psy16204        400 SGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQL---  476 (577)
Q Consensus       400 ~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L---  476 (577)
                      .+..............|.+|+|||+-.+.+   ..+.+...++.+..++..+....        +-||.+|...+.+   
T Consensus       123 l~~~~~~~~~~LS~g~~~~lilDe~t~~~~---~~~lD~~~~~~l~~ll~~l~~~g--------~tvl~itH~~~~~~~~  191 (525)
T 1tf7_A          123 LSALIERINYAIQKYRARRVSIDSVTSVFQ---QYDASSVVRRELFRLVARLKQIG--------ATTVMTTERIEEYGPI  191 (525)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEECSTTTST---TTCCHHHHHHHHHHHHHHHHHHT--------CEEEEEEECSSSSSCS
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECCHHHHHH---hcCCHHHHHHHHHHHHHHHHHCC--------CEEEEEecCCCCcccc


Q ss_pred             -----HHHhhcCc
Q psy16204        477 -----LTLCLEGV  484 (577)
Q Consensus       477 -----~~allrr~  484 (577)
                           ...+..++
T Consensus       192 ~~~~i~~~laD~v  204 (525)
T 1tf7_A          192 ARYGVEEFVSDNV  204 (525)
T ss_dssp             STTSCHHHHCSEE
T ss_pred             ccccceeeeeeEE

>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}

Probab=94.69  E-value=0.24  Score=47.95  Aligned_cols=34  Identities=26%  Similarity=0.305  Sum_probs=26.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      +.+++.+|+|+|||..+-..+-+.+...+.+-..
T Consensus        32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~   65 (337)
T 2z0m_A           32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPT   65 (337)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCC
Confidence            4799999999999998877776667666665553

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19

Probab=94.61  E-value=0.31  Score=47.58  Aligned_cols=24  Identities=21%  Similarity=0.177  Sum_probs=19.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +.+++.+|+|+|||..+-..+.++
T Consensus        45 ~~~l~~~~TGsGKT~~~~~~~~~~   68 (367)
T 1hv8_A           45 YNIVAQARTGSGKTASFAIPLIEL   68 (367)
T ss_dssp             SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCChHHHHHHHHHHHH
Confidence            478999999999999876655443

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.60  E-value=0.014  Score=57.06  Aligned_cols=32  Identities=16%  Similarity=0.116  Sum_probs=26.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSS  280 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~  280 (577)
                      ++|+|.||+|+|||+||..|++... .++..+.
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs   66 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRGH-RLIADDR   66 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence            5689999999999999999998866 5554443

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.57  E-value=0.027  Score=58.51  Aligned_cols=23  Identities=22%  Similarity=0.180  Sum_probs=20.3

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +.|.||.|||||+|.|.||.-..
T Consensus        29 ~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           29 FVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEECCCCccHHHHHHHHHcCCC
Confidence            67999999999999999996543

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=94.55  E-value=0.025  Score=53.81  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=22.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      -|+|.||+|+|||+|++.|.++....
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~   28 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDS   28 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCC
Confidence            47899999999999999999886533

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=94.52  E-value=0.024  Score=63.51  Aligned_cols=36  Identities=17%  Similarity=0.256  Sum_probs=31.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      .-|+|.|.+|+|||++|++|++.+   |.+++.++...+
T Consensus        53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i   91 (630)
T 1x6v_B           53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI   91 (630)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence            458999999999999999999999   999998875433

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=94.40  E-value=0.38  Score=45.61  Aligned_cols=18  Identities=22%  Similarity=0.276  Sum_probs=15.6

Q ss_pred             ceeEEecCCCCChHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAK  265 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAk  265 (577)
                      +.+++.+|+|+|||..+-
T Consensus        67 ~~~l~~apTGsGKT~~~~   84 (242)
T 3fe2_A           67 LDMVGVAQTGSGKTLSYL   84 (242)
T ss_dssp             CCEEEEECTTSCHHHHHH
T ss_pred             CCEEEECCCcCHHHHHHH
Confidence            479999999999998754

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.39  E-value=0.024  Score=56.00  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=24.4

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFF  276 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv  276 (577)
                      +-|.|+||+|||++|+.|++.++++++
T Consensus        11 ~~~~G~pGsGKsT~a~~L~~~~g~~~i   37 (230)
T 3gmt_A           11 LILLGAPGAGKGTQANFIKEKFGIPQI   37 (230)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred             eeeECCCCCCHHHHHHHHHHHhCCCee
Confidence            568999999999999999999998764

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=94.37  E-value=0.26  Score=54.67  Aligned_cols=35  Identities=14%  Similarity=0.210  Sum_probs=27.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh-------CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC-------GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el-------~~~fv~v~~s~  282 (577)
                      .++|+.|.+|+|||.+++.|...+       .+.|+.++...
T Consensus       215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg  256 (574)
T 2iut_A          215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM  256 (574)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred             CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence            469999999999999999877654       24678887763

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}

Probab=94.35  E-value=0.11  Score=48.75  Aligned_cols=18  Identities=33%  Similarity=0.468  Sum_probs=15.4

Q ss_pred             ceeEEecCCCCChHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAK  265 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAk  265 (577)
                      +.+++.+|+|+|||..+-
T Consensus        63 ~~~li~a~TGsGKT~~~~   80 (236)
T 2pl3_A           63 KDVLGAAKTGSGKTLAFL   80 (236)
T ss_dssp             CCEEEECCTTSCHHHHHH
T ss_pred             CCEEEEeCCCCcHHHHHH
Confidence            469999999999998644

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=94.32  E-value=0.085  Score=56.54  Aligned_cols=30  Identities=27%  Similarity=0.246  Sum_probs=24.2

Q ss_pred             CcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204        239 LPTIMPEFFKEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       239 ~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .|+.+.   ..+++.||+|+|||+|++.|++..
T Consensus       169 ~pi~rG---Qr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          169 SPIGRG---QRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             SCCBTT---CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             eeecCC---cEEEEecCCCCChhHHHHHHHHHH
Confidence            455443   468999999999999999999865

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.22  E-value=0.36  Score=52.77  Aligned_cols=22  Identities=27%  Similarity=0.265  Sum_probs=20.0

Q ss_pred             eEEecCCCCChHHHHHHHHHHh
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +.|.||.|+|||+|+++|+..+
T Consensus       297 ~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          297 IGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6799999999999999999764

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=94.16  E-value=0.35  Score=50.36  Aligned_cols=18  Identities=28%  Similarity=0.386  Sum_probs=15.7

Q ss_pred             ceeEEecCCCCChHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAK  265 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAk  265 (577)
                      +.+|+.||+|+|||..+-
T Consensus       132 ~~~l~~a~TGsGKT~~~~  149 (479)
T 3fmp_B          132 QNLIAQSQSGTGKTAAFV  149 (479)
T ss_dssp             CEEEEECCSSSSHHHHHH
T ss_pred             CcEEEEcCCCCchhHHHH
Confidence            579999999999998743

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=94.15  E-value=0.027  Score=52.72  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=22.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +-+.|.||+|+|||+|++.|+....
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCc
Confidence            3578999999999999999998764

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=94.11  E-value=0.021  Score=62.12  Aligned_cols=36  Identities=11%  Similarity=0.010  Sum_probs=28.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l  283 (577)
                      .-|+|.|.||+|||++|+.||+.++   .....++..++
T Consensus        36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~   74 (520)
T 2axn_A           36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY   74 (520)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence            3588999999999999999999985   44445555543

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=94.09  E-value=0.028  Score=54.23  Aligned_cols=30  Identities=17%  Similarity=0.053  Sum_probs=24.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC--CeEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG--TTFFN  277 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~--~~fv~  277 (577)
                      .-|.|.|++|+|||++++.|++.++  ..++.
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~   58 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIM   58 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence            3478999999999999999999986  45443

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=94.05  E-value=0.3  Score=46.14  Aligned_cols=18  Identities=33%  Similarity=0.519  Sum_probs=15.3

Q ss_pred             ceeEEecCCCCChHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAK  265 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAk  265 (577)
                      +.+++.+|+|+|||..+-
T Consensus        67 ~~~l~~a~TGsGKT~~~~   84 (245)
T 3dkp_A           67 RELLASAPTGSGKTLAFS   84 (245)
T ss_dssp             CCEEEECCTTSCHHHHHH
T ss_pred             CCEEEECCCCCcHHHHHH
Confidence            468999999999998643

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.02  E-value=0.021  Score=57.25  Aligned_cols=35  Identities=9%  Similarity=0.109  Sum_probs=25.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL  283 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l  283 (577)
                      -|.+.||+|+|||++|+.|++.++   ..+..+++.++
T Consensus         7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~   44 (290)
T 1a7j_A            7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   44 (290)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence            478999999999999999999876   44566776665

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=93.91  E-value=0.75  Score=46.01  Aligned_cols=20  Identities=25%  Similarity=0.320  Sum_probs=16.2

Q ss_pred             ceeEEecCCCCChHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAV  267 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaL  267 (577)
                      +.+++.+|+|+|||..+-..
T Consensus        78 ~~~lv~a~TGsGKT~~~~~~   97 (414)
T 3eiq_A           78 YDVIAQAQSGTGKTATFAIS   97 (414)
T ss_dssp             CCEEECCCSCSSSHHHHHHH
T ss_pred             CCEEEECCCCCcccHHHHHH
Confidence            46899999999999875433

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=93.90  E-value=0.27  Score=45.85  Aligned_cols=18  Identities=28%  Similarity=0.283  Sum_probs=15.4

Q ss_pred             ceeEEecCCCCChHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAK  265 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAk  265 (577)
                      +.+++.+|+|+|||..+-
T Consensus        58 ~~~l~~apTGsGKT~~~~   75 (228)
T 3iuy_A           58 IDLIVVAQTGTGKTLSYL   75 (228)
T ss_dssp             CCEEEECCTTSCHHHHHH
T ss_pred             CCEEEECCCCChHHHHHH
Confidence            478999999999998654

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=93.88  E-value=0.35  Score=47.80  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=17.3

Q ss_pred             ceeEEecCCCCChHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA  268 (577)
                      +.+|+.+|+|+|||..+-..+
T Consensus        45 ~~~lv~a~TGsGKT~~~~~~~   65 (395)
T 3pey_A           45 RNMIAQSQSGTGKTAAFSLTM   65 (395)
T ss_dssp             CCEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            579999999999998765444

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=93.84  E-value=0.061  Score=54.13  Aligned_cols=27  Identities=11%  Similarity=0.036  Sum_probs=23.4

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      +.-|.+.|++|+|||+||+.|+..++.
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            345789999999999999999988863

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=93.81  E-value=0.033  Score=52.09  Aligned_cols=24  Identities=8%  Similarity=0.153  Sum_probs=21.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.|.||+|+|||+|+++|+..+.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            377999999999999999998874

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=93.81  E-value=0.035  Score=53.36  Aligned_cols=26  Identities=12%  Similarity=0.124  Sum_probs=23.0

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      -+.|.||.|+|||++++.|+..+|..
T Consensus        27 iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           27 LIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhchh
Confidence            36799999999999999999988754

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=93.79  E-value=0.66  Score=42.22  Aligned_cols=19  Identities=32%  Similarity=0.429  Sum_probs=15.9

Q ss_pred             ceeEEecCCCCChHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKA  266 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAka  266 (577)
                      +.+++.+|+|+|||..+-.
T Consensus        41 ~~~lv~apTGsGKT~~~~~   59 (206)
T 1vec_A           41 RDILARAKNGTGKSGAYLI   59 (206)
T ss_dssp             CCEEEECCSSSTTHHHHHH
T ss_pred             CCEEEECCCCCchHHHHHH
Confidence            5799999999999976553

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=93.77  E-value=0.033  Score=53.58  Aligned_cols=25  Identities=16%  Similarity=0.270  Sum_probs=22.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +-+.|.||+|+|||+|+++|+....
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4578999999999999999998865

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=93.66  E-value=0.034  Score=52.98  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=28.7

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      +|++|++|+|||++|..++.. +.+.+++.-..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~   33 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ   33 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence            689999999999999999988 88888888764

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}

Probab=93.62  E-value=0.19  Score=48.46  Aligned_cols=18  Identities=22%  Similarity=0.307  Sum_probs=15.5

Q ss_pred             ceeEEecCCCCChHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAK  265 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAk  265 (577)
                      +.+++.+|+|+|||..+-
T Consensus        81 ~~~lv~a~TGsGKT~~~~   98 (249)
T 3ber_A           81 RDIIGLAETGSGKTGAFA   98 (249)
T ss_dssp             CCEEEECCTTSCHHHHHH
T ss_pred             CCEEEEcCCCCCchhHhH
Confidence            579999999999998654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=93.60  E-value=0.037  Score=52.63  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=21.0

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||+|+|||+|++.|+...
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999999876

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}

Probab=93.55  E-value=0.14  Score=49.75  Aligned_cols=19  Identities=26%  Similarity=0.412  Sum_probs=15.9

Q ss_pred             ceeEEecCCCCChHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKA  266 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAka  266 (577)
                      +.+|+.+|+|+|||..+-.
T Consensus        92 ~~~lv~a~TGsGKT~~~~l  110 (262)
T 3ly5_A           92 RDLLAAAKTGSGKTLAFLI  110 (262)
T ss_dssp             CCCEECCCTTSCHHHHHHH
T ss_pred             CcEEEEccCCCCchHHHHH
Confidence            4689999999999987543

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=93.48  E-value=0.11  Score=52.66  Aligned_cols=24  Identities=21%  Similarity=0.198  Sum_probs=21.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .-+.|.||+|+|||++++.||..+
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHH
Confidence            457899999999999999999776

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=93.42  E-value=0.046  Score=60.31  Aligned_cols=34  Identities=12%  Similarity=0.082  Sum_probs=29.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC----CeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG----TTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~----~~fv~v~~s  281 (577)
                      ..|+|.|++|+|||++|++|++.++    .+++.++..
T Consensus       397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D  434 (573)
T 1m8p_A          397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD  434 (573)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred             eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence            4588999999999999999999986    778888754

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=93.42  E-value=0.11  Score=57.37  Aligned_cols=37  Identities=24%  Similarity=0.132  Sum_probs=25.0

Q ss_pred             CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHH
Q psy16204        225 GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       225 G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA  268 (577)
                      -.+..++.+..++..+       .-.|++||||||||.++-.+.
T Consensus       190 LN~~Q~~AV~~al~~~-------~~~lI~GPPGTGKT~ti~~~I  226 (646)
T 4b3f_X          190 LDTSQKEAVLFALSQK-------ELAIIHGPPGTGKTTTVVEII  226 (646)
T ss_dssp             CCHHHHHHHHHHHHCS-------SEEEEECCTTSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcCC-------CceEEECCCCCCHHHHHHHHH
Confidence            3566677777776421       136999999999997544333

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=93.40  E-value=0.053  Score=51.77  Aligned_cols=28  Identities=11%  Similarity=0.092  Sum_probs=23.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh-CCeE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC-GTTF  275 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el-~~~f  275 (577)
                      .-|.|.|++|+|||++++.|++.+ +..+
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~~~   31 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence            347899999999999999999999 4433

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=93.37  E-value=0.15  Score=54.99  Aligned_cols=44  Identities=9%  Similarity=-0.128  Sum_probs=35.6

Q ss_pred             cCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHH
Q psy16204        224 AGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       224 iG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      +|.+..++.|.+.+...-  ..-.+-|.++|+.|+|||+||+.+++
T Consensus       131 ~GR~~~~~~l~~~L~~~~--~~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMC--DLDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHT--TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhccc--CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            599999999999884321  11235688999999999999999997

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=93.36  E-value=0.15  Score=55.65  Aligned_cols=34  Identities=15%  Similarity=0.245  Sum_probs=26.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh-------CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC-------GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el-------~~~fv~v~~s  281 (577)
                      .++|+.|++|+|||++++.|...+       .+.|+-++..
T Consensus       168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK  208 (512)
T 2ius_A          168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK  208 (512)
T ss_dssp             CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence            368999999999999999887543       2456666654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.33  E-value=0.081  Score=47.48  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      ..|++.|++|+|||+|+.++...
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=93.31  E-value=0.12  Score=57.34  Aligned_cols=23  Identities=22%  Similarity=0.112  Sum_probs=20.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||.|+|||+|.+.|+..+
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999999754

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=93.31  E-value=0.077  Score=49.56  Aligned_cols=32  Identities=9%  Similarity=-0.093  Sum_probs=23.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---CCeEEEEec
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSS  280 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~  280 (577)
                      -++++||+|+|||+++..++..+   +..++.+..
T Consensus         5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~   39 (184)
T 2orw_A            5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKP   39 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence            46899999999999997776554   555555443

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=93.21  E-value=0.065  Score=58.52  Aligned_cols=24  Identities=17%  Similarity=0.169  Sum_probs=21.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.+.||.|+|||+|++.|+....
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999997653

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=93.20  E-value=0.051  Score=50.00  Aligned_cols=23  Identities=22%  Similarity=0.263  Sum_probs=21.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||.|+|||+|+|.|+..+
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            47899999999999999999987

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=93.19  E-value=0.021  Score=55.40  Aligned_cols=28  Identities=14%  Similarity=0.205  Sum_probs=23.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh-CCeE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC-GTTF  275 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el-~~~f  275 (577)
                      .-|.|.|++|+|||++++.|++.+ +..+
T Consensus        25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~   53 (263)
T 1p5z_B           25 KKISIEGNIAAGKSTFVNILKQLCEDWEV   53 (263)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            457899999999999999999998 4433

>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*

Probab=93.10  E-value=0.49  Score=49.09  Aligned_cols=34  Identities=29%  Similarity=0.262  Sum_probs=28.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      ..+|+.+|+|+|||.++-.++..++.+.+.+-..
T Consensus       109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~  142 (472)
T 2fwr_A          109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT  142 (472)
T ss_dssp             TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence            3589999999999999998888888777776654

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A

Probab=93.09  E-value=1  Score=44.68  Aligned_cols=23  Identities=22%  Similarity=0.267  Sum_probs=18.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      +.+|+.+|+|+|||..+-..+-.
T Consensus        46 ~~~lv~a~TGsGKT~~~~~~~~~   68 (391)
T 1xti_A           46 MDVLCQAKSGMGKTAVFVLATLQ   68 (391)
T ss_dssp             CCEEEECSSCSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHHHH
Confidence            47999999999999877554443

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=93.07  E-value=0.031  Score=52.96  Aligned_cols=24  Identities=21%  Similarity=0.242  Sum_probs=14.7

Q ss_pred             eeEEecCCCCChHHHHHHHH-HHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVA-TECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA-~el~  272 (577)
                      -+.|.||+|+|||+|++.|+ ..+.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC----
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCCC
Confidence            47899999999999999999 7653

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=93.06  E-value=0.025  Score=60.06  Aligned_cols=26  Identities=15%  Similarity=0.066  Sum_probs=23.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      ..|+|.|.||+|||++++.|++.++.
T Consensus        40 ~~IvlvGlpGsGKSTia~~La~~l~~   65 (469)
T 1bif_A           40 TLIVMVGLPARGKTYISKKLTRYLNF   65 (469)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            46899999999999999999998763

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.06  E-value=0.056  Score=48.83  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=21.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      -.+|+||.|+|||+|+++|+-.++.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            3579999999999999999988763

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=93.05  E-value=0.053  Score=51.19  Aligned_cols=23  Identities=22%  Similarity=0.245  Sum_probs=20.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+.|.||+|+|||+|++.|+..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            36899999999999999999876

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=92.99  E-value=0.052  Score=52.37  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=21.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.|.||+|+|||+|+++|+....
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhccCC
Confidence            478999999999999999998864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=92.96  E-value=0.055  Score=53.53  Aligned_cols=23  Identities=17%  Similarity=0.167  Sum_probs=20.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -++|.||+|+|||+++++|+..+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHhC
Confidence            58899999999999999999764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=92.88  E-value=0.063  Score=46.28  Aligned_cols=23  Identities=13%  Similarity=0.153  Sum_probs=20.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      ..|++.|++|+|||+|+.++...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999864

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=92.86  E-value=0.057  Score=49.38  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=20.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .++|.|++|+|||+|.+.++..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5789999999999999999864

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=92.83  E-value=0.45  Score=48.49  Aligned_cols=34  Identities=21%  Similarity=0.174  Sum_probs=27.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      +-++|.|++|+|||+++..||..+   +..+..+++.
T Consensus       106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D  142 (320)
T 1zu4_A          106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD  142 (320)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            458899999999999999999765   4566666654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=92.76  E-value=0.054  Score=54.35  Aligned_cols=25  Identities=16%  Similarity=0.018  Sum_probs=22.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .-+.|.||+|+|||+|++.|+..++
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3478999999999999999999876

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=92.76  E-value=0.17  Score=51.13  Aligned_cols=24  Identities=21%  Similarity=0.127  Sum_probs=21.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .-+.|.||.|+|||++++.||..+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            347899999999999999999875

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=92.74  E-value=0.15  Score=55.61  Aligned_cols=35  Identities=14%  Similarity=0.162  Sum_probs=25.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCC--eEEEEecCcc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGT--TFFNVSSSTL  283 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~--~fv~v~~s~l  283 (577)
                      -+.+.||.|+|||+|++.|+.....  --+.+++.++
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~  407 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL  407 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEET
T ss_pred             EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEc
Confidence            3789999999999999999977642  2344555443

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=92.74  E-value=0.4  Score=55.87  Aligned_cols=20  Identities=25%  Similarity=0.192  Sum_probs=18.4

Q ss_pred             eEEecCCCCChHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~  269 (577)
                      ++|.||.|+|||++.|.++.
T Consensus       676 ~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          676 MIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             EEEESCCCHHHHHHHHHHHH
T ss_pred             EEEECCCCCchHHHHHHHHH
Confidence            78999999999999999874

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=92.67  E-value=0.06  Score=49.24  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=20.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .++|.|++|+|||+|.+.++..
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5789999999999999999875

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=92.66  E-value=0.16  Score=54.00  Aligned_cols=49  Identities=12%  Similarity=0.050  Sum_probs=33.6

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ..++++.-....+..|...+..      .-.-+++.||+|+|||+++++++..+.
T Consensus       144 ~~l~~Lg~~~~~~~~L~~l~~~------~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          144 LDLHSLGMTAHNHDNFRRLIKR------PHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             CCGGGSCCCHHHHHHHHHHHTS------SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             CCHHHcCCCHHHHHHHHHHHHh------cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            3455555445555566665321      112478999999999999999998874

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=92.62  E-value=0.067  Score=46.28  Aligned_cols=22  Identities=9%  Similarity=0.131  Sum_probs=19.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|+|||+|+.++...
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999999863

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=92.60  E-value=0.066  Score=45.81  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=19.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|+|||+|+.++...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=92.51  E-value=0.78  Score=50.28  Aligned_cols=34  Identities=15%  Similarity=0.149  Sum_probs=26.0

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCC--eEEEEecCcc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGT--TFFNVSSSTL  283 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~--~fv~v~~s~l  283 (577)
                      +.+.||.|+|||+|++.|+.....  --+.+++.++
T Consensus       372 ~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i  407 (587)
T 3qf4_A          372 VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV  407 (587)
T ss_dssp             EEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBG
T ss_pred             EEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEc
Confidence            689999999999999999876642  2355565554

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=92.46  E-value=0.073  Score=45.75  Aligned_cols=22  Identities=27%  Similarity=0.308  Sum_probs=19.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|+|||+|..++...
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998763

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=92.44  E-value=0.11  Score=57.20  Aligned_cols=31  Identities=29%  Similarity=0.238  Sum_probs=24.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v  278 (577)
                      ..+++.|+||||||+++++++..+   +..++.+
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~  238 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC  238 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            468999999999999999998765   4454444

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=92.44  E-value=0.068  Score=46.72  Aligned_cols=21  Identities=33%  Similarity=0.311  Sum_probs=19.1

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|++.|++|+|||+|..++..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCccHHHHHHHHhc
Confidence            689999999999999999863

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=92.39  E-value=0.091  Score=48.57  Aligned_cols=46  Identities=20%  Similarity=0.081  Sum_probs=31.5

Q ss_pred             cccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        222 KVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       222 dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .+-+.++..+.+...+..     .....++|.|++|+|||+|+..++..+.
T Consensus        10 ~l~~~~~~~~~~~~~~~~-----~~~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           10 LLAENKRLAEKNREALRE-----SGTVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             -CHHHHHHHHHHHHHHHH-----HTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             HHhhcHHHHHHHHHhhcc-----cCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            344455555555554421     1234789999999999999999998864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=92.36  E-value=0.076  Score=45.65  Aligned_cols=22  Identities=23%  Similarity=0.293  Sum_probs=19.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|+|||+|+.++...
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999854

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.34  E-value=0.072  Score=49.03  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=21.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      ..|+|.|++|+|||+|+.++....
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            469999999999999999998753

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=92.32  E-value=0.11  Score=56.82  Aligned_cols=26  Identities=12%  Similarity=-0.014  Sum_probs=23.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      ..|.|.|.+|||||++|++||+.++.
T Consensus       396 ~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          396 FSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             eEEEecccCCCCHHHHHHHHHHHHHH
Confidence            46889999999999999999999985

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.31  E-value=0.078  Score=45.83  Aligned_cols=22  Identities=9%  Similarity=0.123  Sum_probs=19.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|+|||+|..++...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=92.27  E-value=0.059  Score=48.62  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=19.2

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|+|.|++|||||+|++.++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999975

>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}

Probab=92.20  E-value=1.6  Score=45.32  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=25.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh--------CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC--------GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el--------~~~fv~v~~s  281 (577)
                      +.+|+.+|+|+|||..+-..+...        +...+.+-..
T Consensus        20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~   61 (555)
T 3tbk_A           20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ   61 (555)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            479999999999999877666554        5555555543

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=92.19  E-value=0.62  Score=54.38  Aligned_cols=20  Identities=10%  Similarity=0.129  Sum_probs=18.2

Q ss_pred             eEEecCCCCChHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~  269 (577)
                      ++|.||.|+|||++.|.+|-
T Consensus       665 ~~ItGpNGsGKSTlLr~ial  684 (934)
T 3thx_A          665 HIITGPNMGGKSTYIRQTGV  684 (934)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999853

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=92.19  E-value=0.076  Score=47.07  Aligned_cols=21  Identities=19%  Similarity=0.175  Sum_probs=19.2

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .++|.|++|+|||+|.++++.
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999974

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=92.19  E-value=0.075  Score=54.01  Aligned_cols=24  Identities=17%  Similarity=0.029  Sum_probs=21.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.|.||+|+|||+|++.|+..+.
T Consensus        92 ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           92 IIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHhhcc
Confidence            477999999999999999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.14  E-value=0.083  Score=45.78  Aligned_cols=22  Identities=14%  Similarity=0.167  Sum_probs=20.0

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|+|||+|.+++...
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999999764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=92.08  E-value=0.7  Score=51.24  Aligned_cols=22  Identities=27%  Similarity=0.166  Sum_probs=20.0

Q ss_pred             eEEecCCCCChHHHHHHHHHHh
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +.|.||.|+|||+|+|.|+..+
T Consensus       385 ~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          385 IGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999999764

>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}

Probab=92.07  E-value=1.1  Score=46.93  Aligned_cols=34  Identities=6%  Similarity=0.165  Sum_probs=24.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---C-CeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---G-TTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~-~~fv~v~~s  281 (577)
                      +.+|++||+|+|||..+-.++..+   + ..++.+-..
T Consensus       129 ~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~  166 (510)
T 2oca_A          129 RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPT  166 (510)
T ss_dssp             SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESS
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence            478999999999999987666552   2 355555543

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}

Probab=92.05  E-value=2  Score=47.43  Aligned_cols=34  Identities=24%  Similarity=0.272  Sum_probs=23.8

Q ss_pred             ceeEEecCCCCChHHHHHHHH-HH---hCCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVA-TE---CGTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA-~e---l~~~fv~v~~s  281 (577)
                      +.+|+.||+|+|||+.+-..+ +.   -+...+++...
T Consensus        47 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~   84 (715)
T 2va8_A           47 NRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPL   84 (715)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSC
T ss_pred             CcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCc
Confidence            579999999999999985333 22   24556665554

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=92.02  E-value=0.31  Score=58.61  Aligned_cols=34  Identities=12%  Similarity=0.114  Sum_probs=25.8

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCe--EEEEecCcc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTT--FFNVSSSTL  283 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~--fv~v~~s~l  283 (577)
                      +.++||+|+|||+|++.|.......  -+.+++.++
T Consensus       447 vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i  482 (1321)
T 4f4c_A          447 VALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDV  482 (1321)
T ss_dssp             EEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred             EEEEecCCCcHHHHHHHhccccccccCcccCCCccc
Confidence            6899999999999999999887532  344554443

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=92.00  E-value=0.14  Score=56.38  Aligned_cols=38  Identities=16%  Similarity=0.142  Sum_probs=26.4

Q ss_pred             cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204        226 LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       226 ~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+..++.+..++..        ..+|+.||||||||+++..++..+
T Consensus       182 n~~Q~~av~~~l~~--------~~~li~GppGTGKT~~~~~~i~~l  219 (624)
T 2gk6_A          182 NHSQVYAVKTVLQR--------PLSLIQGPPGTGKTVTSATIVYHL  219 (624)
T ss_dssp             CHHHHHHHHHHHTC--------SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcC--------CCeEEECCCCCCHHHHHHHHHHHH
Confidence            34555555555521        257899999999999887776654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=91.99  E-value=0.086  Score=45.68  Aligned_cols=22  Identities=23%  Similarity=0.280  Sum_probs=19.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|+|||+|..++...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=91.97  E-value=0.088  Score=45.75  Aligned_cols=22  Identities=18%  Similarity=0.093  Sum_probs=20.0

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|+|||+|..++...
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999999854

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=91.96  E-value=0.09  Score=45.41  Aligned_cols=22  Identities=14%  Similarity=0.066  Sum_probs=19.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -.|++.|++|+|||+|..++..
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            3689999999999999999976

>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A

Probab=91.95  E-value=0.46  Score=50.48  Aligned_cols=18  Identities=33%  Similarity=0.506  Sum_probs=15.4

Q ss_pred             ceeEEecCCCCChHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAK  265 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAk  265 (577)
                      +.+|+.+|+|+|||..+-
T Consensus       112 ~~~lv~apTGsGKTl~~~  129 (563)
T 3i5x_A          112 HDVIARAKTGTGKTFAFL  129 (563)
T ss_dssp             EEEEEECCTTSCHHHHHH
T ss_pred             CeEEEECCCCCCccHHHH
Confidence            579999999999998543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=91.95  E-value=1  Score=49.13  Aligned_cols=147  Identities=13%  Similarity=0.004  Sum_probs=0.0

Q ss_pred             eEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCccccccccchHHHHHH-HHHHhhhhhccccCcceeeccc
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSSTLTSKYRGESEKLVRL-LFEMVSFLVGLHSNKTFYLVGV  319 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~l~~k~~G~~e~~vr~-lF~~a~~~~~~~~~~~~~~~~~  319 (577)
                      +.|.||.|+|||+|+|+|+...         ...+-++.-.-......--.+..... .........-..=.+.+-|-+.
T Consensus       315 ~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  394 (538)
T 1yqt_A          315 IGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDL  394 (538)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGG
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhh


Q ss_pred             cCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCc
Q psy16204        320 LNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGH  399 (577)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  399 (577)
                      .+..+..--|+++++..+-.                                                            
T Consensus       395 ~~~~~~~LSGGe~qrv~lAr------------------------------------------------------------  414 (538)
T 1yqt_A          395 YDREVNELSGGELQRVAIAA------------------------------------------------------------  414 (538)
T ss_dssp             TTSBGGGCCHHHHHHHHHHH------------------------------------------------------------
T ss_pred             hcCChhhCCHHHHHHHHHHH------------------------------------------------------------


Q ss_pred             chhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHH
Q psy16204        400 SGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTL  479 (577)
Q Consensus       400 ~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~a  479 (577)
                                 +-...|.||++||-        ..+-+...+..+..+|..+-.-.+.       -||+.|...+.+...
T Consensus       415 -----------aL~~~p~lLlLDEP--------t~~LD~~~~~~i~~~l~~l~~~~g~-------tvi~vsHd~~~~~~~  468 (538)
T 1yqt_A          415 -----------TLLRDADIYLLDEP--------SAYLDVEQRLAVSRAIRHLMEKNEK-------TALVVEHDVLMIDYV  468 (538)
T ss_dssp             -----------HHTSCCSEEEEECT--------TTTCCHHHHHHHHHHHHHHHHHHTC-------EEEEECSCHHHHHHH
T ss_pred             -----------HHHhCCCEEEEeCC--------cccCCHHHHHHHHHHHHHHHHhCCC-------EEEEEeCCHHHHHHh


Q ss_pred             hhc
Q psy16204        480 CLE  482 (577)
Q Consensus       480 llr  482 (577)
                      +-+
T Consensus       469 ~dr  471 (538)
T 1yqt_A          469 SDR  471 (538)
T ss_dssp             CSE
T ss_pred             CCE

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=91.93  E-value=0.086  Score=45.66  Aligned_cols=21  Identities=19%  Similarity=0.172  Sum_probs=19.2

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|++.|++|+|||+|..++..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999875

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=91.92  E-value=0.09  Score=46.14  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=20.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|..++...
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=91.92  E-value=0.09  Score=46.08  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|+.++...
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=91.92  E-value=0.086  Score=45.90  Aligned_cols=20  Identities=25%  Similarity=0.363  Sum_probs=18.4

Q ss_pred             eeEEecCCCCChHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA  268 (577)
                      .|++.|++|+|||+|+.++.
T Consensus         4 ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999986

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=91.91  E-value=0.24  Score=53.90  Aligned_cols=35  Identities=17%  Similarity=0.097  Sum_probs=27.9

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      +..|+|.|++|+|||+++..||..+   |..+..+++.
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D  138 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD  138 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            4578999999999999999999776   5666666663

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=91.90  E-value=0.079  Score=46.00  Aligned_cols=20  Identities=30%  Similarity=0.418  Sum_probs=18.2

Q ss_pred             eeEEecCCCCChHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA  268 (577)
                      .|++.|++|+|||+|.+++.
T Consensus         4 ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            57999999999999999885

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=91.89  E-value=0.099  Score=45.27  Aligned_cols=22  Identities=18%  Similarity=0.119  Sum_probs=19.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|+|||+|..++...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=91.86  E-value=0.086  Score=46.99  Aligned_cols=22  Identities=18%  Similarity=0.135  Sum_probs=19.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      ..|+|.|++|+|||+|.++++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3689999999999999999975

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=91.86  E-value=0.094  Score=45.29  Aligned_cols=21  Identities=24%  Similarity=0.275  Sum_probs=19.4

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|++.|++|+|||+|.+++..
T Consensus         5 ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999985

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=91.85  E-value=0.093  Score=46.41  Aligned_cols=23  Identities=22%  Similarity=0.176  Sum_probs=20.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|+|.|++|+|||+|+.++...
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999863

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=91.82  E-value=0.19  Score=53.53  Aligned_cols=36  Identities=25%  Similarity=0.165  Sum_probs=28.6

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      +..|+|.|++|+|||+++..||..+   |..+..+++..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~  137 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT  137 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            3568999999999999999999876   35666666653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=91.77  E-value=0.18  Score=51.75  Aligned_cols=24  Identities=21%  Similarity=0.070  Sum_probs=21.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .-+.|.||+|+|||++++.||..+
T Consensus       130 ~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          130 YVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            458899999999999999999775

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=91.72  E-value=0.24  Score=50.64  Aligned_cols=33  Identities=15%  Similarity=0.137  Sum_probs=25.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEec
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSS  280 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~  280 (577)
                      ..|.|.|+||+|||+|+..|+..+   |..+..+++
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~  115 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV  115 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence            468899999999999999999876   444444443

>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19

Probab=91.70  E-value=1.1  Score=42.42  Aligned_cols=18  Identities=22%  Similarity=0.342  Sum_probs=15.3

Q ss_pred             ceeEEecCCCCChHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAK  265 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAk  265 (577)
                      +.+++.+|+|+|||..+-
T Consensus        61 ~~~l~~a~TGsGKT~~~~   78 (253)
T 1wrb_A           61 RDIMACAQTGSGKTAAFL   78 (253)
T ss_dssp             CCEEEECCTTSSHHHHHH
T ss_pred             CCEEEECCCCChHHHHHH
Confidence            478999999999998654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=91.68  E-value=0.097  Score=53.83  Aligned_cols=36  Identities=8%  Similarity=-0.005  Sum_probs=27.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCC-----eEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGT-----TFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~-----~fv~v~~s~l  283 (577)
                      .-+.|.||+|||||++++.|+..++.     .+..+....+
T Consensus        93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f  133 (321)
T 3tqc_A           93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF  133 (321)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence            35789999999999999999998752     3444555443

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=91.64  E-value=0.1  Score=45.61  Aligned_cols=23  Identities=17%  Similarity=0.193  Sum_probs=20.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|..++...
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=91.62  E-value=0.1  Score=50.67  Aligned_cols=30  Identities=23%  Similarity=0.294  Sum_probs=26.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      .|-|+|..|||||++++.+++ +|++++..+
T Consensus        11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD   40 (210)
T 4i1u_A           11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD   40 (210)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence            578999999999999999998 999876544

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=91.60  E-value=0.095  Score=53.55  Aligned_cols=27  Identities=22%  Similarity=0.177  Sum_probs=23.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      ..+.|+||+|+|||+|++.|+..+...
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl~~G~  153 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHFLGGS  153 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHHTCE
T ss_pred             CEEEEECCCCCcHHHHHHHHhhhcCce
Confidence            357899999999999999999987433

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=91.60  E-value=1.5  Score=48.83  Aligned_cols=22  Identities=36%  Similarity=0.373  Sum_probs=20.1

Q ss_pred             eEEecCCCCChHHHHHHHHHHh
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +.|.||.|+|||+|++.|+...
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            6899999999999999999764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=91.60  E-value=0.13  Score=50.26  Aligned_cols=23  Identities=17%  Similarity=0.015  Sum_probs=18.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -|.|.|++|+|||++++.|++.+
T Consensus        27 ~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           27 FITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             EEEEECCC---CHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37788999999999999999987

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=91.59  E-value=0.094  Score=54.45  Aligned_cols=24  Identities=17%  Similarity=0.145  Sum_probs=21.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      ..+++.||+|+|||+++++|+..+
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            358999999999999999999764

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=91.57  E-value=0.18  Score=52.55  Aligned_cols=24  Identities=21%  Similarity=0.127  Sum_probs=21.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .-++|.||.|+|||++++.||..+
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHhhc
Confidence            357899999999999999999876

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=91.57  E-value=0.1  Score=45.62  Aligned_cols=23  Identities=17%  Similarity=0.098  Sum_probs=20.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|..++...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999753

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A

Probab=91.55  E-value=1.1  Score=45.16  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=17.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      +.+++.+|+|+|||..+-..+-
T Consensus        75 ~~~lv~a~TGsGKT~~~~~~~~   96 (410)
T 2j0s_A           75 RDVIAQSQSGTGKTATFSISVL   96 (410)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCCchHHHHHHHH
Confidence            4699999999999987664443

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=91.55  E-value=0.1  Score=46.18  Aligned_cols=22  Identities=9%  Similarity=0.197  Sum_probs=20.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|+|||+|+.++...
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999875

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=91.55  E-value=0.1  Score=45.72  Aligned_cols=23  Identities=17%  Similarity=0.221  Sum_probs=20.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      ..|++.|++|+|||+|..++...
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999865

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=91.52  E-value=0.1  Score=45.90  Aligned_cols=23  Identities=26%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|+.++...
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            36899999999999999998753

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=91.51  E-value=0.11  Score=50.01  Aligned_cols=30  Identities=13%  Similarity=0.006  Sum_probs=24.2

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC---CeEEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG---TTFFNV  278 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v  278 (577)
                      -|.|.|++|+|||++++.|++.+.   .+++.+
T Consensus         8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~   40 (213)
T 4edh_A            8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT   40 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence            367889999999999999999874   444433

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=91.49  E-value=0.11  Score=51.35  Aligned_cols=33  Identities=18%  Similarity=0.161  Sum_probs=26.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      .|++.|+||||||++|-.+|..+   |..++.+...
T Consensus         8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D   43 (228)
T 2r8r_A            8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE   43 (228)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            58999999999999999888775   5555555543

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=91.48  E-value=0.11  Score=48.62  Aligned_cols=24  Identities=29%  Similarity=0.160  Sum_probs=21.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .-+.|.|++|+|||+|++.|...+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhc
Confidence            467899999999999999998875

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=91.47  E-value=0.11  Score=45.19  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=19.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -.|++.|++|+|||+|..++..
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999999965

>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}

Probab=91.46  E-value=3.4  Score=42.84  Aligned_cols=17  Identities=24%  Similarity=0.395  Sum_probs=14.8

Q ss_pred             ceeEEecCCCCChHHHH
Q psy16204        248 KEALERHSHGTGKTMLA  264 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LA  264 (577)
                      +.+++.+|+|+|||..+
T Consensus        94 ~d~i~~a~TGsGKT~a~  110 (434)
T 2db3_A           94 RDLMACAQTGSGKTAAF  110 (434)
T ss_dssp             CCEEEECCTTSSHHHHH
T ss_pred             CCEEEECCCCCCchHHH
Confidence            57999999999999843

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=91.46  E-value=0.11  Score=48.78  Aligned_cols=24  Identities=17%  Similarity=0.025  Sum_probs=21.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +-+.|.|++|+|||+++..|+..+
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhh
Confidence            467899999999999999999876

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=91.43  E-value=0.1  Score=46.75  Aligned_cols=23  Identities=22%  Similarity=0.195  Sum_probs=20.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|++++...
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=91.42  E-value=0.11  Score=45.73  Aligned_cols=23  Identities=22%  Similarity=0.289  Sum_probs=20.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      ..|++.|++|+|||+|+.++...
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            36899999999999999999854

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=91.41  E-value=0.14  Score=49.13  Aligned_cols=27  Identities=22%  Similarity=0.263  Sum_probs=23.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      .++||.|++|+|||++|.++.+. |..+
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r-G~~l   43 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR-GHQL   43 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence            58999999999999999999884 5443

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=91.40  E-value=0.078  Score=51.03  Aligned_cols=23  Identities=17%  Similarity=0.098  Sum_probs=20.2

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +.|.||.|+|||+|++.|+.-..
T Consensus        33 ~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           33 VSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             EEEEECTTSCHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            67999999999999999986543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=91.39  E-value=0.083  Score=50.60  Aligned_cols=22  Identities=36%  Similarity=0.374  Sum_probs=19.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -+.|.||.|+|||+|++.|+..
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4779999999999999999975

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=91.39  E-value=0.095  Score=51.25  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=21.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .-+.|.||.|+|||+|++.|+.-..
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3567999999999999999997653

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=91.38  E-value=0.11  Score=45.93  Aligned_cols=22  Identities=18%  Similarity=0.296  Sum_probs=19.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|+|||+|..++...
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999853

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=91.37  E-value=0.098  Score=45.80  Aligned_cols=22  Identities=27%  Similarity=0.208  Sum_probs=19.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -.|++.|++|+|||+|+.++..
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999999863

>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}

Probab=91.37  E-value=1.2  Score=47.98  Aligned_cols=18  Identities=33%  Similarity=0.506  Sum_probs=15.3

Q ss_pred             ceeEEecCCCCChHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAK  265 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAk  265 (577)
                      +.+|+.+|+|+|||..+-
T Consensus        61 ~dvlv~apTGsGKTl~~~   78 (579)
T 3sqw_A           61 HDVIARAKTGTGKTFAFL   78 (579)
T ss_dssp             EEEEEECCTTSCHHHHHH
T ss_pred             CeEEEEcCCCcHHHHHHH
Confidence            579999999999998543

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=91.35  E-value=1.3  Score=44.25  Aligned_cols=18  Identities=28%  Similarity=0.386  Sum_probs=15.7

Q ss_pred             ceeEEecCCCCChHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAK  265 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAk  265 (577)
                      +.+|+.+|+|+|||..+-
T Consensus        65 ~~~lv~apTGsGKT~~~~   82 (412)
T 3fht_A           65 QNLIAQSQSGTGKTAAFV   82 (412)
T ss_dssp             CCEEEECCTTSCHHHHHH
T ss_pred             CeEEEECCCCchHHHHHH
Confidence            579999999999998764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=91.34  E-value=0.11  Score=46.44  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=20.0

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|+|||+|+.+++..
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=91.32  E-value=0.084  Score=51.27  Aligned_cols=24  Identities=13%  Similarity=0.070  Sum_probs=20.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.|.||.|+|||+|++.|+.-..
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            368999999999999999986553

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=91.31  E-value=0.17  Score=49.10  Aligned_cols=27  Identities=19%  Similarity=0.068  Sum_probs=24.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      -|.|.|++|+|||++++.|++.++.+.
T Consensus         7 ~i~~eG~~g~GKst~~~~l~~~l~~~~   33 (216)
T 3tmk_A            7 LILIEGLDRTGKTTQCNILYKKLQPNC   33 (216)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccc
Confidence            478899999999999999999998743

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=91.30  E-value=0.11  Score=46.06  Aligned_cols=24  Identities=17%  Similarity=-0.000  Sum_probs=20.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -.|++.|++|+|||+|++.+....
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhc
Confidence            368999999999999998887643

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=91.28  E-value=0.11  Score=46.04  Aligned_cols=23  Identities=26%  Similarity=0.249  Sum_probs=20.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|+.++...
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=91.25  E-value=0.11  Score=45.62  Aligned_cols=22  Identities=23%  Similarity=0.119  Sum_probs=19.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      ..|++.|++|+|||+|..++..
T Consensus         9 ~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            9 PVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.20  E-value=0.12  Score=46.55  Aligned_cols=23  Identities=22%  Similarity=0.199  Sum_probs=20.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|+|.|++|+|||+|..++...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            36899999999999999999864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=91.17  E-value=0.12  Score=45.52  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=20.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|..++...
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999998753

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=91.12  E-value=0.09  Score=51.12  Aligned_cols=23  Identities=26%  Similarity=0.208  Sum_probs=20.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||.|+|||+|++.|+...
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999998654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=91.07  E-value=0.11  Score=52.98  Aligned_cols=27  Identities=26%  Similarity=0.289  Sum_probs=23.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      ..+.|.||+|+|||+|++.|+..+...
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            457899999999999999999987654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=91.04  E-value=0.11  Score=46.07  Aligned_cols=21  Identities=14%  Similarity=0.137  Sum_probs=19.1

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|++.|++|+|||+|..++..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999874

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=91.02  E-value=0.13  Score=45.41  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=19.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|+|||+|..++...
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998753

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A

Probab=90.99  E-value=0.66  Score=51.30  Aligned_cols=34  Identities=29%  Similarity=0.331  Sum_probs=23.8

Q ss_pred             ceeEEecCCCCChHHHHHHH-HHHh--CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAV-ATEC--GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaL-A~el--~~~fv~v~~s  281 (577)
                      +.+|+.||+|+|||..+-.. ...+  +...+++...
T Consensus        41 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~   77 (702)
T 2p6r_A           41 KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPL   77 (702)
T ss_dssp             SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCc
Confidence            57999999999999988533 3332  4555665554

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=90.94  E-value=0.13  Score=45.60  Aligned_cols=22  Identities=18%  Similarity=0.215  Sum_probs=19.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|+|.|++|+|||+|+.++...
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999853

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=90.89  E-value=0.13  Score=47.61  Aligned_cols=25  Identities=20%  Similarity=0.141  Sum_probs=21.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ..|+|.|.+|||||+|+..++....
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4678889999999999999998863

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.85  E-value=0.14  Score=45.11  Aligned_cols=23  Identities=22%  Similarity=0.180  Sum_probs=20.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|..++...
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            36899999999999999998764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=90.84  E-value=0.078  Score=58.34  Aligned_cols=35  Identities=20%  Similarity=0.215  Sum_probs=27.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC----CeEEEEecCcc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG----TTFFNVSSSTL  283 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~----~~fv~v~~s~l  283 (577)
                      .+.|.|++|+|||+|+++||..++    ..+..++...+
T Consensus       371 iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          371 TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            478999999999999999999985    34544555443

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=90.79  E-value=0.099  Score=51.65  Aligned_cols=23  Identities=17%  Similarity=0.134  Sum_probs=20.4

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +.|.||.|+|||+|+++|+.-+.
T Consensus        35 ~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           35 ISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            67999999999999999987654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=90.79  E-value=0.14  Score=45.14  Aligned_cols=23  Identities=17%  Similarity=0.184  Sum_probs=20.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|..++...
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999998753

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=90.71  E-value=0.12  Score=46.22  Aligned_cols=22  Identities=14%  Similarity=0.164  Sum_probs=19.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      ..|++.|++|+|||+|..++..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999999874

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=90.70  E-value=0.12  Score=50.49  Aligned_cols=21  Identities=29%  Similarity=0.387  Sum_probs=19.4

Q ss_pred             eEEecCCCCChHHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      +.|.||.|+|||+|++.|+.-
T Consensus        32 ~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           32 HALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999999974

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=90.67  E-value=0.13  Score=46.21  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=19.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|+|.|++|+|||+|.++++..
T Consensus         6 ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            6 KVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999753

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=90.67  E-value=0.1  Score=51.19  Aligned_cols=24  Identities=21%  Similarity=0.235  Sum_probs=20.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.|.||.|+|||+|.|.|+.-..
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            367999999999999999987653

>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*

Probab=90.66  E-value=1.6  Score=45.48  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=24.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh--------CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC--------GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el--------~~~fv~v~~s  281 (577)
                      +.+|+.+|+|+|||..+-..+...        +...+.+-..
T Consensus        23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~   64 (556)
T 4a2p_A           23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK   64 (556)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred             CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence            468999999999999877666544        4555555443

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=90.66  E-value=0.14  Score=45.75  Aligned_cols=23  Identities=26%  Similarity=0.244  Sum_probs=20.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|+.++...
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999853

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=90.65  E-value=0.1  Score=46.05  Aligned_cols=22  Identities=18%  Similarity=0.051  Sum_probs=19.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|||||+|+..+...
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999863

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=90.58  E-value=0.13  Score=51.05  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=19.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -+.|.||.|+|||+|++.|+.-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3689999999999999999975

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=90.57  E-value=0.15  Score=45.49  Aligned_cols=23  Identities=22%  Similarity=0.231  Sum_probs=20.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|+.++...
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=90.55  E-value=0.15  Score=45.87  Aligned_cols=23  Identities=22%  Similarity=0.104  Sum_probs=20.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|+|.|++|+|||+|..++...
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999998754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=90.54  E-value=0.13  Score=45.66  Aligned_cols=23  Identities=22%  Similarity=0.153  Sum_probs=20.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      ..|++.|++|+|||+|+.++...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999998654

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=90.54  E-value=0.88  Score=49.58  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=20.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -++|.|++|+|||.|+..++...
T Consensus       155 r~~Ifgg~G~GKT~L~~~i~~~~  177 (482)
T 2ck3_D          155 KIGLFGGAGVGKTVLIMELINNV  177 (482)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             eeeeecCCCCChHHHHHHHHHhh
Confidence            48999999999999999998874

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=90.54  E-value=0.11  Score=50.53  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=20.4

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +.|.||.|+|||+|.+.|+.-..
T Consensus        35 ~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           35 VTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            67999999999999999987653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=90.54  E-value=0.34  Score=45.98  Aligned_cols=34  Identities=18%  Similarity=0.085  Sum_probs=26.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh--CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC--GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el--~~~fv~v~~s  281 (577)
                      ..+++.|.+|+|||+++..+|..+  |..+..+++.
T Consensus        15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D   50 (262)
T 1yrb_A           15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD   50 (262)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            457899999999999999999776  5555555543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=90.52  E-value=0.15  Score=46.26  Aligned_cols=22  Identities=23%  Similarity=0.237  Sum_probs=19.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|||||+|+..+...
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            5899999999999999988764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.52  E-value=0.15  Score=45.96  Aligned_cols=23  Identities=22%  Similarity=0.146  Sum_probs=20.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .|+|.|++|+|||+|+.++...-
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            58999999999999999998754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=90.50  E-value=0.15  Score=46.00  Aligned_cols=23  Identities=22%  Similarity=0.289  Sum_probs=20.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|+|.|++|+|||+|..++...
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999998754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=90.50  E-value=0.11  Score=50.52  Aligned_cols=23  Identities=13%  Similarity=0.037  Sum_probs=20.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||.|+|||+|++.|+.-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999998764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=90.50  E-value=0.14  Score=46.55  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=20.0

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|+|||+|.+++...
T Consensus        25 ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           25 KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999863

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=90.48  E-value=0.52  Score=51.17  Aligned_cols=25  Identities=12%  Similarity=0.084  Sum_probs=22.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      -++|.|++|+|||+|+..||+...+
T Consensus       154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~  178 (469)
T 2c61_A          154 KLPIFSASGLPHNEIALQIARQASV  178 (469)
T ss_dssp             BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3688899999999999999999875

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.43  E-value=0.15  Score=46.19  Aligned_cols=23  Identities=22%  Similarity=0.153  Sum_probs=20.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|+.++...
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=90.43  E-value=0.2  Score=54.42  Aligned_cols=25  Identities=20%  Similarity=0.086  Sum_probs=22.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .++++.||+|+|||+++++|+..+.
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4689999999999999999987764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=90.42  E-value=0.15  Score=45.12  Aligned_cols=22  Identities=14%  Similarity=0.108  Sum_probs=19.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      ..|+|.|++|+|||+|+.++..
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            3689999999999999999884

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=90.40  E-value=0.11  Score=49.98  Aligned_cols=23  Identities=30%  Similarity=0.287  Sum_probs=20.3

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +.|.||.|+|||+|+++|+..+.
T Consensus        38 ~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           38 VNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            67999999999999999987653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=90.31  E-value=0.16  Score=46.02  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|..++...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999764

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=90.30  E-value=0.15  Score=49.99  Aligned_cols=24  Identities=17%  Similarity=0.141  Sum_probs=21.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -|.|.|++|+|||++++.|++.+.
T Consensus        29 ~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           29 FIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             EEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999998874

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=90.29  E-value=1.1  Score=52.86  Aligned_cols=20  Identities=20%  Similarity=0.197  Sum_probs=18.3

Q ss_pred             eeEEecCCCCChHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA  268 (577)
                      -++|.||.|+|||++.|.|+
T Consensus       791 i~~ItGpNgsGKSTlLr~iG  810 (1022)
T 2o8b_B          791 CVLVTGPNMGGKSTLMRQAG  810 (1022)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHH
Confidence            47899999999999999984

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=90.29  E-value=0.12  Score=50.66  Aligned_cols=24  Identities=21%  Similarity=0.080  Sum_probs=20.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.|.||.|+|||+|++.|+.-+.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            368999999999999999987654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=90.24  E-value=0.12  Score=49.89  Aligned_cols=24  Identities=29%  Similarity=0.199  Sum_probs=20.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.|.||.|+|||+|.+.|+..+.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            368999999999999999987653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=90.21  E-value=0.16  Score=46.10  Aligned_cols=22  Identities=18%  Similarity=0.090  Sum_probs=19.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|+|.|++|||||+|+..+...
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999887753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=90.16  E-value=0.15  Score=46.13  Aligned_cols=22  Identities=23%  Similarity=0.075  Sum_probs=19.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -.|+|.|++|+|||+|+.++..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999999874

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=90.16  E-value=0.17  Score=45.72  Aligned_cols=23  Identities=22%  Similarity=0.138  Sum_probs=20.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|..++...
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            36899999999999999999864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=90.13  E-value=0.12  Score=51.71  Aligned_cols=23  Identities=17%  Similarity=0.122  Sum_probs=20.5

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +.|.||.|+|||+|+++|+.-+.
T Consensus        37 ~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           37 TAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCCC
Confidence            68999999999999999987653

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=90.13  E-value=0.27  Score=56.30  Aligned_cols=38  Identities=16%  Similarity=0.142  Sum_probs=26.5

Q ss_pred             cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204        226 LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       226 ~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+..++.+..++..        .-+|+.||||||||+++..++..+
T Consensus       358 n~~Q~~Av~~~l~~--------~~~lI~GppGTGKT~ti~~~i~~l  395 (800)
T 2wjy_A          358 NHSQVYAVKTVLQR--------PLSLIQGPPGTGKTVTSATIVYHL  395 (800)
T ss_dssp             CHHHHHHHHHHHTS--------SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhccC--------CeEEEEcCCCCCHHHHHHHHHHHH
Confidence            34555556555521        247899999999999888776654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=90.12  E-value=0.17  Score=45.68  Aligned_cols=22  Identities=18%  Similarity=0.227  Sum_probs=19.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|+|||+|..++...
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999763

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=90.10  E-value=0.12  Score=50.87  Aligned_cols=23  Identities=22%  Similarity=0.198  Sum_probs=20.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||.|+|||+|++.|+.-+
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            47899999999999999998754

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=90.09  E-value=0.099  Score=48.72  Aligned_cols=25  Identities=16%  Similarity=-0.012  Sum_probs=22.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +.+.|.|++|+|||+|++.|+..+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3578999999999999999998764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=90.08  E-value=0.16  Score=45.93  Aligned_cols=23  Identities=13%  Similarity=0.153  Sum_probs=20.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|..++...
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=90.07  E-value=0.17  Score=45.63  Aligned_cols=22  Identities=23%  Similarity=0.190  Sum_probs=19.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|++|+|||+|..++...
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=90.06  E-value=0.17  Score=45.45  Aligned_cols=22  Identities=18%  Similarity=0.144  Sum_probs=19.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -.|+|.|++|+|||+|..++..
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            3689999999999999999875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=90.05  E-value=0.14  Score=52.89  Aligned_cols=25  Identities=32%  Similarity=0.381  Sum_probs=22.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ..++|.||+|+|||+|+++|+....
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4689999999999999999998654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=90.04  E-value=0.17  Score=50.23  Aligned_cols=24  Identities=17%  Similarity=0.185  Sum_probs=21.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .+.|.||+|+|||+|.+.|+....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999998753

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=90.03  E-value=0.16  Score=46.18  Aligned_cols=23  Identities=22%  Similarity=0.231  Sum_probs=20.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|+|.|++|+|||+|..++...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999998753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.02  E-value=0.17  Score=45.41  Aligned_cols=22  Identities=18%  Similarity=0.178  Sum_probs=20.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -.|++.|++|+|||+|..++..
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHc
Confidence            3689999999999999999976

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=90.01  E-value=0.13  Score=51.18  Aligned_cols=24  Identities=17%  Similarity=0.170  Sum_probs=21.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.|.||.|+|||+|++.|+..+.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            378999999999999999987654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=89.99  E-value=0.086  Score=48.09  Aligned_cols=21  Identities=14%  Similarity=0.145  Sum_probs=18.8

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .+.|.|++|+|||+|.++++.
T Consensus        28 ~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           28 EVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             EEEEEECTTSSHHHHHTTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999998863

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=89.98  E-value=0.15  Score=45.93  Aligned_cols=24  Identities=33%  Similarity=0.248  Sum_probs=20.6

Q ss_pred             cceeEEecCCCCChHHHHHHHHHH
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      ...|++.|++|+|||+|.+++...
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999998743

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=89.97  E-value=0.17  Score=45.99  Aligned_cols=23  Identities=9%  Similarity=0.111  Sum_probs=20.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|+.++...
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            36899999999999999999753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=89.89  E-value=0.12  Score=45.78  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=18.9

Q ss_pred             ceeEEecCCCCChHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA  268 (577)
                      ..|++.|++|+|||+|..++.
T Consensus        19 ~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHh
Confidence            479999999999999998875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=89.87  E-value=0.13  Score=50.57  Aligned_cols=24  Identities=21%  Similarity=0.142  Sum_probs=20.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.|.||.|+|||+|++.|+..+.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            368999999999999999987653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=89.87  E-value=0.17  Score=46.09  Aligned_cols=23  Identities=22%  Similarity=0.193  Sum_probs=20.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|+|.|++|+|||+|+.++...
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36899999999999999999864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=89.85  E-value=0.18  Score=45.82  Aligned_cols=22  Identities=23%  Similarity=0.218  Sum_probs=19.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -.|++.|++|+|||+|..++..
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999875

>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*

Probab=89.84  E-value=0.84  Score=46.40  Aligned_cols=23  Identities=26%  Similarity=0.156  Sum_probs=17.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      +.+++.+|+|+|||..+-..+..
T Consensus        37 ~~~lv~apTGsGKT~~~l~~~~~   59 (414)
T 3oiy_A           37 KSFTMVAPTGVGKTTFGMMTALW   59 (414)
T ss_dssp             CCEECCSCSSSSHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHH
Confidence            47899999999999955444333

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=89.82  E-value=0.13  Score=51.39  Aligned_cols=23  Identities=22%  Similarity=0.130  Sum_probs=20.5

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +.|.||.|+|||+|++.|+..+.
T Consensus        50 ~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           50 WILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCC
Confidence            68999999999999999987653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=89.79  E-value=0.17  Score=45.16  Aligned_cols=22  Identities=23%  Similarity=0.148  Sum_probs=19.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -.|++.|++|+|||+|..++..
T Consensus        19 ~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           19 LRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999999874

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=89.74  E-value=0.4  Score=52.42  Aligned_cols=23  Identities=26%  Similarity=0.229  Sum_probs=20.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -++|.|+.|+|||+|++.||..+
T Consensus       295 VI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          295 VILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcccHHHHHHHHHHHh
Confidence            47899999999999999999775

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=89.71  E-value=0.14  Score=50.62  Aligned_cols=22  Identities=32%  Similarity=0.344  Sum_probs=19.9

Q ss_pred             eEEecCCCCChHHHHHHHHHHh
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +.|.||.|+|||+|++.|+.-.
T Consensus        36 ~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           36 LLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6799999999999999998654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=89.71  E-value=0.2  Score=45.90  Aligned_cols=22  Identities=27%  Similarity=0.309  Sum_probs=19.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|+|.|.+|||||+|..++...
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998864

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*

Probab=89.65  E-value=1.7  Score=48.14  Aligned_cols=34  Identities=26%  Similarity=0.327  Sum_probs=23.9

Q ss_pred             ceeEEecCCCCChHHHHH-HHHHH---hCCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAK-AVATE---CGTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAk-aLA~e---l~~~fv~v~~s  281 (577)
                      +.+|+.||+|+|||..+- .+...   -+...+++...
T Consensus        40 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~   77 (720)
T 2zj8_A           40 KNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPL   77 (720)
T ss_dssp             CEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSS
T ss_pred             CcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCc
Confidence            579999999999999874 33322   25566666654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=89.62  E-value=0.18  Score=46.82  Aligned_cols=23  Identities=22%  Similarity=0.195  Sum_probs=20.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|++.+...
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999864

>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*

Probab=89.60  E-value=0.93  Score=48.77  Aligned_cols=33  Identities=21%  Similarity=0.165  Sum_probs=23.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSS  280 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~  280 (577)
                      +.+|+.+|+|+|||..+-.-+-..+...+.+..
T Consensus        41 ~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P   73 (523)
T 1oyw_A           41 RDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSP   73 (523)
T ss_dssp             CCEEEECSCHHHHHHHHHHHHHHSSSEEEEECS
T ss_pred             CCEEEECCCCcHHHHHHHHHHHHhCCCEEEECC
Confidence            468999999999998666555444444455544

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=89.53  E-value=0.2  Score=45.96  Aligned_cols=23  Identities=26%  Similarity=0.212  Sum_probs=20.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      ..|++.|++|+|||+|..++...
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.47  E-value=0.18  Score=45.12  Aligned_cols=22  Identities=14%  Similarity=0.146  Sum_probs=19.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -.|++.|++|+|||+|..++..
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999974

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=89.47  E-value=0.2  Score=48.81  Aligned_cols=26  Identities=19%  Similarity=0.069  Sum_probs=22.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      .-|.|.|++|+|||++++.|++.++.
T Consensus        22 ~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           22 MFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34778899999999999999988654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=89.39  E-value=0.2  Score=45.07  Aligned_cols=23  Identities=22%  Similarity=0.206  Sum_probs=20.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|++.|++|+|||+|+.++...
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999864

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=89.39  E-value=0.18  Score=55.56  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=20.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +-+++.|+||||||+++..+...+
T Consensus       165 ~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          165 RISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHH
Confidence            468999999999999988777654

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=89.38  E-value=0.2  Score=48.20  Aligned_cols=24  Identities=21%  Similarity=0.167  Sum_probs=21.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -|.|.|++|+|||++++.|++.+.
T Consensus         5 ~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            5 YIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            367899999999999999998873

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=89.34  E-value=0.16  Score=46.65  Aligned_cols=21  Identities=19%  Similarity=0.151  Sum_probs=18.9

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|++.|++|+|||+|.+++..
T Consensus        27 ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           27 KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEETTSSHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999863

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=89.31  E-value=0.2  Score=45.34  Aligned_cols=22  Identities=23%  Similarity=0.178  Sum_probs=19.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -.|++.|++|+|||+|...+..
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999874

>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B

Probab=89.27  E-value=1.1  Score=55.56  Aligned_cols=19  Identities=32%  Similarity=0.316  Sum_probs=16.9

Q ss_pred             ceeEEecCCCCChHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKA  266 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAka  266 (577)
                      +++|++-|+|+|||.+|-.
T Consensus        96 ~N~lv~APTGsGKTlva~l  114 (1724)
T 4f92_B           96 ENLLLCAPTGAGKTNVALM  114 (1724)
T ss_dssp             CCEEEECCTTSCCHHHHHH
T ss_pred             CcEEEEeCCcchHHHHHHH
Confidence            5899999999999998863

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=89.27  E-value=0.12  Score=45.86  Aligned_cols=22  Identities=23%  Similarity=0.156  Sum_probs=9.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -.|++.|++|+|||+|+.++..
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=89.23  E-value=0.14  Score=52.39  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=22.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ..+++.||+|+|||+|+++|+....
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc
Confidence            4689999999999999999998753

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=89.22  E-value=0.3  Score=49.25  Aligned_cols=36  Identities=25%  Similarity=0.079  Sum_probs=28.4

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCc
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSST  282 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~  282 (577)
                      ..-+++.|++|+|||+++..||..+   +..+..+++.-
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~  136 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV  136 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            3457889999999999999999776   56666666653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=89.18  E-value=0.19  Score=45.00  Aligned_cols=22  Identities=18%  Similarity=0.206  Sum_probs=19.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      ..|+|.|++|+|||+|..++..
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4699999999999999998863

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=89.13  E-value=0.22  Score=44.84  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=20.2

Q ss_pred             eEEecCCCCChHHHHHHHHHHh
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .+|+||.|+|||+|..+|.-.+
T Consensus        26 ~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5899999999999999998766

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.11  E-value=0.21  Score=46.36  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -.|+|.|++|+|||+|++++...
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            36899999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	577
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	2e-28
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	9e-21
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	3e-27
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	2e-20
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	2e-20
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	1e-15
d1e32a2	258	c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p	5e-15
d1e32a2	258	c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p	2e-11
d1w44a_	321	c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta	3e-11
d1w44a_	321	c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta	5e-09
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	4e-08
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	0.002
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	2e-05
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	2e-04

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score =  111 bits (279), Expect = 2e-28
 Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 50/185 (27%)

Query: 398 GHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLN 455
           G      ++    A+ +AP  +FIDE+D++   RGS     ++   +   +LL++MDG  
Sbjct: 84  GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 143

Query: 456 SSLYEDKIIMILAATNHP---------------------------YQLLTLCLEGVVIDV 488
                D  I+++AATN P                            Q+L +   G  +  
Sbjct: 144 K----DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE 199

Query: 489 NLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDF 548
           ++D   ++K   G+ G+D+ NL  +AA+++ R                      +T KD 
Sbjct: 200 DVDLALLAKRTPGFVGADLENLLNEAALLAAREGRR-----------------KITMKDL 242

Query: 549 REAIA 553
            EA +
Sbjct: 243 EEAAS 247

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score = 89.5 bits (222), Expect = 9e-21
 Identities = 34/94 (36%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHS--------HGTGKTMLAKAV 267
           P V +  VAG  EAK  L+E +V     P  F E   R           G GKT LA+AV
Sbjct: 4   PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 62

Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           A E    F   S S     + G     VR LFE 
Sbjct: 63  AGEARVPFITASGSDFVEMFVGVGAARVRDLFET 96

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score =  108 bits (271), Expect = 3e-27
 Identities = 40/174 (22%), Positives = 75/174 (43%), Gaps = 50/174 (28%)

Query: 410 QARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMIL 467
           QA+  AP  IFIDE+D++   RG+     H+   +   ++L++MDG       ++ I+++
Sbjct: 99  QAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG----NEGIIVI 154

Query: 468 AATNHP---------------------------YQLLTLCLEGVVIDVNLDFHKISKMLE 500
           AATN P                            Q+L + +  V +  ++D   I++   
Sbjct: 155 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTP 214

Query: 501 GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554
           G++G+D+ANL  +AA+ + R                      V+  +F +A  +
Sbjct: 215 GFSGADLANLVNEAALFAARGNKR-----------------VVSMVEFEKAKDK 251

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score = 89.1 bits (221), Expect = 2e-20
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHS--------HGTGKTM 262
           + ++     +  VAG  EAK  + E +      P  F++   +           GTGKT+
Sbjct: 2   LTEDQIKTTFADVAGCDEAKEEVAELVEYLR-EPSRFQKLGGKIPKGVLMVGPPGTGKTL 60

Query: 263 LAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           LAKA+A E    FF +S S     + G     VR +FE 
Sbjct: 61  LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQ 99

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.1 bits (220), Expect = 2e-20
 Identities = 43/193 (22%), Positives = 78/193 (40%), Gaps = 40/193 (20%)

Query: 394 QSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRG--SDSEHEASRRFKAELLIQM 451
               G S    +    +AR  AP  +F DE+DS+   RG        A+ R   ++L +M
Sbjct: 79  TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 138

Query: 452 DGLNSSLYEDKIIMILAATNHPYQL---------------------------LTLCLEGV 484
           DG+++     K + I+ ATN P  +                           L   L   
Sbjct: 139 DGMST----KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 194

Query: 485 VIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID---L 541
            +  ++D   ++KM  G++G+D+  + + A  ++IR  I     ++I+  ++   +   +
Sbjct: 195 PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI----ESEIRRERERQTNPSAM 250

Query: 542 PVTEKDFREAIAR 554
            V E D    I R
Sbjct: 251 EVEEDDPVPEIRR 263

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.9 bits (183), Expect = 1e-15
 Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAV 267
           P V W  + GL + K  LQE +  P   P+ F +         L     G GKT+LAKA+
Sbjct: 2   PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 61

Query: 268 ATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           A EC   F ++    L + + GESE  VR +F+ 
Sbjct: 62  ANECQANFISIKGPELLTMWFGESEANVREIFDK 95

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.1 bits (178), Expect = 5e-15
 Identities = 44/189 (23%), Positives = 81/189 (42%), Gaps = 32/189 (16%)

Query: 393 CQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMD 452
                G S    + +  +A   AP+ IFIDE+D++   R      E  RR  ++LL  MD
Sbjct: 75  MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMD 133

Query: 453 GLNSSLYEDKIIMILAATNHPY---------------------------QLLTLCLEGVV 485
                L +   ++++AATN P                            ++L +  + + 
Sbjct: 134 ----GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK 189

Query: 486 IDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTE 545
           +  ++D  +++    G+ G+D+A L  +AA+ +IR+K+            +    L VT 
Sbjct: 190 LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTM 249

Query: 546 KDFREAIAR 554
            DFR A+++
Sbjct: 250 DDFRWALSQ 258

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.4 bits (150), Expect = 2e-11
 Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE--------ALERHSHGTGKTMLAKAVAT 269
           V ++ V G  +  A ++E + LP   P  FK          L     GTGKT++A+AVA 
Sbjct: 1   VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60

Query: 270 ECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 301
           E G  FF ++   + SK  GESE  +R  FE 
Sbjct: 61  ETGAFFFLINGPEIMSKLAGESESNLRKAFEE 92

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

 Score = 62.4 bits (151), Expect = 3e-11
 Identities = 18/152 (11%), Positives = 41/152 (26%), Gaps = 25/152 (16%)

Query: 164 IIAANASENSVSHEANEKDGVFRQDIREKIFYSTGFEPSLIETLEKDILQNNPNVQW--N 221
           + +       ++      D +      ++I          +   EK +   + +V     
Sbjct: 37  LESVEDGTPVLAIGVESGDAIVFDKNAQRI----------VAYKEKSVKAEDGSVSVVQV 86

Query: 222 KVAGLTEAKAILQEAMV--LPTIMPEFFKEALERHSH---------GTGKTMLAKAVATE 270
           +   + +        +   L    P   +    R++           +GKT L  A+   
Sbjct: 87  ENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146

Query: 271 CG--TTFFNVSSSTLTSKYRGESEKLVRLLFE 300
            G    +  V      S Y  +    V  +  
Sbjct: 147 LGGKDKYATVRFGEPLSGYNTDFNVFVDDIAR 178

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

 Score = 55.8 bits (134), Expect = 5e-09
 Identities = 17/154 (11%), Positives = 48/154 (31%), Gaps = 35/154 (22%)

Query: 415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPY 474
               I ID + ++    G ++      R   +LL  +  + +S    +  +++A+ N   
Sbjct: 182 QHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAAS----RGCVVIASLNPTS 237

Query: 475 QLLTL------------CLEGVVIDVNLDFHKISKMLEGY--TGSDIANLARDAAMMSIR 520
               +                +  DV+ ++  +++  EG       +     + ++++I 
Sbjct: 238 NDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQRLTHTLQTSYGEHSVLTIH 297

Query: 521 RKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 554
                                   ++   +AI  
Sbjct: 298 TSKQ-----------------SGGKQASGKAIQT 314

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 52.7 bits (125), Expect = 4e-08
 Identities = 14/176 (7%), Positives = 40/176 (22%), Gaps = 19/176 (10%)

Query: 410 QARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQM------DGLNSSLYEDKI 463
               Y+                    E              M      +     +   KI
Sbjct: 89  HVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKI 148

Query: 464 IMILAATNHPYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKI 523
              L        +         +       +   ++     +++  L +      IR   
Sbjct: 149 NSYLGTIERYETMY----ADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYN 204

Query: 524 MGQTPAQ---------IKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSW 570
                            KE  +++++  V+ K+ +  + R  + +  +   +   +
Sbjct: 205 REGVKLYSSLETPSISPKETLEKELNRKVSGKEIQPTLERIEQKMVLNKHQETPEF 260

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLT---SKYRGESEKLVRLLFEMV 302
           G+GKT L  A+  E       + + T       +    +   + + + V
Sbjct: 42  GSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHV 90

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 257 GTGKTMLAKAVATECGTTFFNVSSSTLTSKY-RGESEKLVRLLFEMVSFLVGLHSNK 312
            +GKT LA A+   CG    NV+       +  G +     ++FE V    G   + 
Sbjct: 164 DSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDL 220

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 13/153 (8%), Positives = 42/153 (27%), Gaps = 16/153 (10%)

Query: 407 SLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAE--LLIQMDGLNSSLYEDKII 464
                    PS   I+ +D+L        +    ++   +   +     +  + Y     
Sbjct: 212 GTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKT 271

Query: 465 MILAATNHPY-----------QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARD 513
           +                    +     LE  +I   +    +  ++     ++ A   + 
Sbjct: 272 LQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIA--LLLMLIWYRPVAEFAQSIQS 329

Query: 514 AAMMSIRRKIMGQTPAQIKEIKQE-DIDLPVTE 545
             +    R     + +  +++K    + + V +
Sbjct: 330 RIVEWKERLDKEFSLSVYQKMKFNVAMGIGVLD 362

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	577
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	100.0
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	100.0
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	100.0
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	100.0
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.89
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.89
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.86
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.83
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	99.8
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.78
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.74
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.7
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.66
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.65
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.63
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.61
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.61
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.52
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.52
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.47
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	99.43
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.42
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.4
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.3
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	99.27
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.24
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	99.15
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.12
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	99.12
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.95
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.78
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	98.71
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.47
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.27
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.18
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.12
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.95
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.86
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.85
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.78
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.76
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.71
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.69
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.67
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.56
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.56
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.56
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.5
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.49
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.46
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.42
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.35
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.34
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.34
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.3
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.29
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.29
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.26
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.22
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.21
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.19
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.18
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.17
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.15
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.1
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.1
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.07
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.04
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.91
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.87
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.83
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.83
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.81
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.77
d1okkd2	207	GTPase domain of the signal recognition particle r	96.71
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.65
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.59
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.53
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.52
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.49
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.48
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.45
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.35
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.32
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.3
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.28
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	96.28
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.28
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.28
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.25
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.18
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	96.16
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.15
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.13
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.05
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.04
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.01
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	95.98
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.95
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.95
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.93
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.89
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.75
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.73
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.72
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.66
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	95.61
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.54
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.47
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.43
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.39
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.21
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	95.2
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.12
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.06
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.04
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	94.9
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.84
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.79
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.72
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	94.69
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.61
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	94.61
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	94.54
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	94.12
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.02
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.0
d2fh5b1	207	Signal recognition particle receptor beta-subunit	93.81
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.8
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	93.76
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	93.75
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.66
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	93.46
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.38
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	93.33
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.33
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	93.33
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	93.2
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.14
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	92.95
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.95
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	92.73
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	92.72
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	92.64
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	92.62
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.58
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	92.56
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	92.54
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	92.48
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	92.44
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	92.4
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.39
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.38
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	92.37
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.37
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.23
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.2
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	92.11
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	92.06
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	92.05
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	92.02
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.01
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	92.01
d1nrjb_	209	Signal recognition particle receptor beta-subunit	91.95
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	91.79
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	91.77
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	91.73
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	91.73
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	91.73
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	91.71
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.65
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	91.59
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	91.59
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	91.58
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.53
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.53
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	91.5
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	91.48
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.32
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	91.29
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	91.27
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	91.26
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	91.25
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	91.19
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	91.15
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.07
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	91.06
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	90.92
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	90.91
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	90.82
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.75
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	90.74
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	90.73
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	90.71
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	90.63
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	90.55
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	90.49
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	90.47
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	90.39
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.38
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	90.12
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	90.04
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	90.04
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	89.85
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	89.76
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	89.7
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	89.66
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	89.64
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.47
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	89.39
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.38
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	89.32
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	89.3
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	89.27
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	89.24
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	88.79
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	88.79
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	88.5
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	88.46
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	88.14
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	88.06
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.03
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	87.99
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	87.88
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	87.82
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	87.51
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	87.48
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	87.33
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	87.27
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	87.13
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	87.02
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	86.73
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.73
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	86.47
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	85.4
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	85.22
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	85.03
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	84.68
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	84.56
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	83.04
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	82.99
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	82.98
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	82.16

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-37  Score=306.65  Aligned_cols=213  Identities=32%  Similarity=0.467  Sum_probs=184.0

Q ss_pred             hcCCCCCcccccCcHHHHHHHHHHHHCcCCCcc--------ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        213 QNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPE--------FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       213 ~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~--------~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      .+.++++|+||+|++++|+.|.+.+.+ +.+++        .++++|||||||||||++|++||++++.++++++++++.
T Consensus         4 ~~~~~~t~~Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~   82 (256)
T d1lv7a_           4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV   82 (256)
T ss_dssp             ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred             CCCCCCCHHHHhchHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhh
Confidence            467789999999999999999987754 33333        247899999999999999999999999999999999999


Q ss_pred             cccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccc
Q psy16204        285 SKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFS  364 (577)
Q Consensus       285 ~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  364 (577)
                      ++|+|++++.++.+|+.                                                               
T Consensus        83 ~~~~g~~~~~l~~~f~~---------------------------------------------------------------   99 (256)
T d1lv7a_          83 EMFVGVGASRVRDMFEQ---------------------------------------------------------------   99 (256)
T ss_dssp             TSCCCCCHHHHHHHHHH---------------------------------------------------------------
T ss_pred             hcchhHHHHHHHHHHHH---------------------------------------------------------------
Confidence            99999999999999987                                                               


Q ss_pred             ccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCC--hhHHHHH
Q psy16204        365 VMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDS--EHEASRR  442 (577)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~--~~~~~~~  442 (577)
                                                                    |+.+.||||||||||.+++.|+.+.  .+....+
T Consensus       100 ----------------------------------------------A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~  133 (256)
T d1lv7a_         100 ----------------------------------------------AKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQ  133 (256)
T ss_dssp             ----------------------------------------------HHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHH
T ss_pred             ----------------------------------------------HHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHH
Confidence                                                          8889999999999999999875443  3456678


Q ss_pred             HHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCHHHH
Q psy16204        443 FKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDFHKI  495 (577)
Q Consensus       443 v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl~~L  495 (577)
                      +++.||..||++..+    .+|+||||||+|+.|+++++|+.+++                           .++++..|
T Consensus       134 ~~~~ll~~~d~~~~~----~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~l  209 (256)
T d1lv7a_         134 TLNQMLVEMDGFEGN----EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAII  209 (256)
T ss_dssp             HHHHHHHHHHTCCSS----SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHH
T ss_pred             HHHHHHHHhhCCCCC----CCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHH
Confidence            999999999998754    67999999999999999998743332                           24589999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHHhC
Q psy16204        496 SKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR  556 (577)
Q Consensus       496 A~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~~~  556 (577)
                      |+.|+||+++||.++|++|++.++|+..                 ..|+.+||++|++++-
T Consensus       210 a~~t~G~s~adi~~l~~~A~~~a~~~~~-----------------~~i~~~d~~~Al~rv~  253 (256)
T d1lv7a_         210 ARGTPGFSGADLANLVNEAALFAARGNK-----------------RVVSMVEFEKAKDKIM  253 (256)
T ss_dssp             HHTCTTCCHHHHHHHHHHHHHHHHHTTC-----------------SSBCHHHHHHHHHHHT
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CccCHHHHHHHHHHHh
Confidence            9999999999999999999999987642                 4699999999999863

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.6e-37  Score=302.91  Aligned_cols=208  Identities=35%  Similarity=0.493  Sum_probs=175.6

Q ss_pred             cCCCCCcccccCcHHHHHHHHHHHHCcCCCcc--------ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        214 NNPNVQWNKVAGLTEAKAILQEAMVLPTIMPE--------FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       214 ~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~--------~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      +.|+++|+||+|++++|+.|++++.. +.+++        .++++||+||||||||++|++||++++++|++++++++.+
T Consensus         2 ~~p~~~~~di~G~~~~k~~l~~~i~~-l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~   80 (247)
T d1ixza_           2 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE   80 (247)
T ss_dssp             CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CCCCCcHHHHccHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhh
Confidence            45789999999999999999987643 44433        3478999999999999999999999999999999999999


Q ss_pred             ccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccc
Q psy16204        286 KYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSV  365 (577)
Q Consensus       286 k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  365 (577)
                      +|+|++++.++.+|+.                                                                
T Consensus        81 ~~~g~~~~~l~~~f~~----------------------------------------------------------------   96 (247)
T d1ixza_          81 MFVGVGAARVRDLFET----------------------------------------------------------------   96 (247)
T ss_dssp             SCTTHHHHHHHHHHHH----------------------------------------------------------------
T ss_pred             ccccHHHHHHHHHHHH----------------------------------------------------------------
Confidence            9999999999999986                                                                


Q ss_pred             cccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCC--ChhHHHHHH
Q psy16204        366 MVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSD--SEHEASRRF  443 (577)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~--~~~~~~~~v  443 (577)
                                                                   |+.+.||||||||||.|+.+|+..  +.+....++
T Consensus        97 ---------------------------------------------a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~  131 (247)
T d1ixza_          97 ---------------------------------------------AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT  131 (247)
T ss_dssp             ---------------------------------------------HTTSSSEEEEEETHHHHHC---------CHHHHHH
T ss_pred             ---------------------------------------------HHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHH
Confidence                                                         778899999999999999887543  234567789


Q ss_pred             HHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCHHHHH
Q psy16204        444 KAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDFHKIS  496 (577)
Q Consensus       444 ~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl~~LA  496 (577)
                      ++.||..||++..+    .+|+||||||+|+.|+++++|+.+++                           .++++..||
T Consensus       132 ~~~ll~~~d~~~~~----~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~la  207 (247)
T d1ixza_         132 LNQLLVEMDGFEKD----TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLA  207 (247)
T ss_dssp             HHHHHHHHHTCCTT----CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHH
T ss_pred             HHHHHHHhhCCCCC----CCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCHHHHH
Confidence            99999999998743    67999999999999999998743332                           245899999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHH
Q psy16204        497 KMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAI  552 (577)
Q Consensus       497 ~~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al  552 (577)
                      +.|+||+|+||.++|++|++.++++..                 ..|+.+||++|+
T Consensus       208 ~~t~g~s~~di~~lv~~A~l~a~~~~~-----------------~~i~~~d~~~A~  246 (247)
T d1ixza_         208 KRTPGFVGADLENLLNEAALLAAREGR-----------------RKITMKDLEEAA  246 (247)
T ss_dssp             HTCTTCCHHHHHHHHHHHHHHHHHTTC-----------------SSBCHHHHHHHT
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CCcCHHHHHHhh
Confidence            999999999999999999999987642                 479999999996

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-37  Score=304.37  Aligned_cols=223  Identities=34%  Similarity=0.470  Sum_probs=184.4

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCcccc--------ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccccc
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFF--------KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRG  289 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~--------k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G  289 (577)
                      |+|+||+|++++|+.|++.+.+|+.+++.+        +|+|||||||||||++|+++|.+++.+|+.++++++.+.|.|
T Consensus         1 ~~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g   80 (258)
T d1e32a2           1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG   80 (258)
T ss_dssp             CCGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTT
T ss_pred             CChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccc
Confidence            579999999999999999998888776543        689999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccC
Q psy16204        290 ESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDG  369 (577)
Q Consensus       290 ~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  369 (577)
                      +.+..++.+|..                                                                    
T Consensus        81 ~~~~~l~~~f~~--------------------------------------------------------------------   92 (258)
T d1e32a2          81 ESESNLRKAFEE--------------------------------------------------------------------   92 (258)
T ss_dssp             HHHHHHHHHHHH--------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHH--------------------------------------------------------------------
Confidence            999999999987                                                                    


Q ss_pred             CCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHH
Q psy16204        370 LGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLI  449 (577)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~  449 (577)
                                                               |+.+.||||||||+|.++.++.++ .++..+++++.++.
T Consensus        93 -----------------------------------------A~~~~p~il~iDeid~l~~~r~~~-~~~~~~~~~~~~~~  130 (258)
T d1e32a2          93 -----------------------------------------AEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLT  130 (258)
T ss_dssp             -----------------------------------------HHHTCSEEEEESSGGGTCCHHHHC-CCTTHHHHHHHHHH
T ss_pred             -----------------------------------------HHhcCCeEEEehhhhhhccCCCCC-CCchHHHHHHHhcc
Confidence                                                     888999999999999999887543 24455678899999


Q ss_pred             HHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCHHHHHHHcCCC
Q psy16204        450 QMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDFHKISKMLEGY  502 (577)
Q Consensus       450 ~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl~~LA~~t~G~  502 (577)
                      .+++....    .+|+||||||+|+.|+++++|+.+++                           .++++..||++|+||
T Consensus       131 ~~~~~~~~----~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~  206 (258)
T d1e32a2         131 LMDGLKQR----AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH  206 (258)
T ss_dssp             HHHTCCCS----SCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHHHHHHCTTC
T ss_pred             cccccccc----CCccEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccccccchhhhhhcccCC
Confidence            99887643    67999999999999999998854443                           245889999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHHHH
Q psy16204        503 TGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR  554 (577)
Q Consensus       503 sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al~~  554 (577)
                      +|+||.++|++|++.+++|.....+..+...-........||++||+.||++
T Consensus       207 s~adl~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~  258 (258)
T d1e32a2         207 VGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ  258 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHCCCSSCCBHHHHHHCCBCHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhccCccCHHHHHHHhCc
Confidence            9999999999999999998753211100000000011357999999999863

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-34  Score=284.60  Aligned_cols=223  Identities=33%  Similarity=0.547  Sum_probs=171.9

Q ss_pred             CCCCCcccccCcHHHHHHHHHHHHCcCCCccc--------cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccc
Q psy16204        215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEF--------FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSK  286 (577)
Q Consensus       215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~--------~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k  286 (577)
                      .|+++|+||+|++++|+.|.+.+.+|+.+++.        +++||||||||||||++|++||.+++++|++++++++.+.
T Consensus         1 ~p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~   80 (265)
T d1r7ra3           1 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM   80 (265)
T ss_dssp             CCCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTS
T ss_pred             CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhc
Confidence            36889999999999999999999888776543        3789999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccccc
Q psy16204        287 YRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVM  366 (577)
Q Consensus       287 ~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  366 (577)
                      |.|..+..++.+|..                                                                 
T Consensus        81 ~~~~~~~~l~~~f~~-----------------------------------------------------------------   95 (265)
T d1r7ra3          81 WFGESEANVREIFDK-----------------------------------------------------------------   95 (265)
T ss_dssp             CTTTHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred             cccchHHHHHHHHHH-----------------------------------------------------------------
Confidence            999999999999986                                                                 


Q ss_pred             ccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCC--CChhHHHHHHH
Q psy16204        367 VDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGS--DSEHEASRRFK  444 (577)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~--~~~~~~~~~v~  444 (577)
                                                                  |+.+.||||||||+|.++..++.  ++.....++++
T Consensus        96 --------------------------------------------A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~  131 (265)
T d1r7ra3          96 --------------------------------------------ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVI  131 (265)
T ss_dssp             --------------------------------------------HHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHH
T ss_pred             --------------------------------------------HHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHH
Confidence                                                        88889999999999999987642  33345567789


Q ss_pred             HHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc---------------------------cccCHHHHHH
Q psy16204        445 AELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID---------------------------VNLDFHKISK  497 (577)
Q Consensus       445 ~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~---------------------------~~vdl~~LA~  497 (577)
                      +.||..|+++..+    .+|+||||||+|+.|+++++|+.+++                           .+++++.||+
T Consensus       132 ~~ll~~l~~~~~~----~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~l~~la~  207 (265)
T d1r7ra3         132 NQILTEMDGMSTK----KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK  207 (265)
T ss_dssp             HHHHHTCC----------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC----CCCCHHHHH
T ss_pred             HHHHHHhhCcCCC----CCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCchhhhhHHHHHh
Confidence            9999999987643    56999999999999988888743332                           2458899999


Q ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhc---cCCCCCCCHHHHHHHHHH
Q psy16204        498 MLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQ---EDIDLPVTEKDFREAIAR  554 (577)
Q Consensus       498 ~t~G~sgsDI~~l~~~Aa~~airr~~~~~~~~~~~~~~~---~~~~~~It~~df~~Al~~  554 (577)
                      +|+||+++||.++|++|+..|+++.+..    .+.+...   ......++.+|+..+|.+
T Consensus       208 ~t~g~s~~di~~lv~~A~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~v~~i~~  263 (265)
T d1r7ra3         208 MTNGFSGADLTEICQRACKLAIRESIES----EIRRERERQTNPSAMEVEEDDPVPEIRR  263 (265)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHHHHC----------------------------CHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccCccccccccccchHHHcc
Confidence            9999999999999999999999886532    1111111   112245777888887765

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.89  E-value=1.7e-23  Score=210.03  Aligned_cols=162  Identities=20%  Similarity=0.268  Sum_probs=128.5

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCcc---------ccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc--cccc
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMPE---------FFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS--KYRG  289 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~~---------~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~--k~~G  289 (577)
                      +.|+||++||+.|..++..++.+..         .++++||+||||||||+|||+||++++.+|+.++++++.+  .+.|
T Consensus        14 ~~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~   93 (309)
T d1ofha_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK   93 (309)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred             CcccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEee
Confidence            4689999999999998854332221         3478999999999999999999999999999999999985  4789


Q ss_pred             chHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccC
Q psy16204        290 ESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDG  369 (577)
Q Consensus       290 ~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  369 (577)
                      +.++.++.+|..|....                                                               
T Consensus        94 ~~~~~~~~~f~~a~~~~---------------------------------------------------------------  110 (309)
T d1ofha_          94 EVDSIIRDLTDSAGGAI---------------------------------------------------------------  110 (309)
T ss_dssp             STTHHHHHHHHTTTTCH---------------------------------------------------------------
T ss_pred             eccccccccchhhhccc---------------------------------------------------------------
Confidence            99999999998632100                                                               


Q ss_pred             CCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHH
Q psy16204        370 LGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLI  449 (577)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~  449 (577)
                                                               .....||||||||||++++.+.+...+...+.+++.||.
T Consensus       111 -----------------------------------------~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~  149 (309)
T d1ofha_         111 -----------------------------------------DAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLP  149 (309)
T ss_dssp             -----------------------------------------HHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHH
T ss_pred             -----------------------------------------ccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhH
Confidence                                                     223346899999999999988776667777789999999


Q ss_pred             HHhCCCCCc----CCCceEEEEEe----cCCchhhHHHhhcCccc
Q psy16204        450 QMDGLNSSL----YEDKIIMILAA----TNHPYQLLTLCLEGVVI  486 (577)
Q Consensus       450 ~mD~~~~~~----~~~~~VlIIat----TN~p~~L~~allrr~~i  486 (577)
                      .+|+...+.    ....+|++||+    +|.++.+++.+..|+..
T Consensus       150 ~~dg~~~~~~~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~~R~~~  194 (309)
T d1ofha_         150 LVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPI  194 (309)
T ss_dssp             HHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCE
T ss_pred             HhcCCEEecCCeEEEccceeEEeccchhhcCcccchhhhhhhhhe
Confidence            999854321    12345778877    78999999999988754

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.89  E-value=8.5e-23  Score=199.45  Aligned_cols=180  Identities=14%  Similarity=0.192  Sum_probs=128.7

Q ss_pred             CCcccccCcHHHHHHHHHHHH-------CcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccccccccc
Q psy16204        218 VQWNKVAGLTEAKAILQEAMV-------LPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGE  290 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~-------~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G~  290 (577)
                      ...+.|+|..+.++.+.+.+.       .+-.  ..+++||||||||||||++|++||++++.+|+.+++++.+.++.+.
T Consensus         6 ~~~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~--~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~   83 (246)
T d1d2na_           6 YIMNGIIKWGDPVTRVLDDGELLVQQTKNSDR--TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSET   83 (246)
T ss_dssp             TCTTCCCCCSHHHHHHHHHHHHHHHHHHHCSS--CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHH
T ss_pred             hhccCCcCcCHHHHHHHHHHHHHHHHHhccCC--CCCeEEEEECcCCCCHHHHHHHHhhccccccccccccccccccccc
Confidence            345667775555544443332       2211  2357999999999999999999999999999999999888877776


Q ss_pred             h-HHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccC
Q psy16204        291 S-EKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDG  369 (577)
Q Consensus       291 ~-e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  369 (577)
                      + .+.++.+|+.                                                                    
T Consensus        84 ~~~~~i~~if~~--------------------------------------------------------------------   95 (246)
T d1d2na_          84 AKCQAMKKIFDD--------------------------------------------------------------------   95 (246)
T ss_dssp             HHHHHHHHHHHH--------------------------------------------------------------------
T ss_pred             chhhhhhhhhhh--------------------------------------------------------------------
Confidence            6 3668888876                                                                    


Q ss_pred             CCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHH
Q psy16204        370 LGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLI  449 (577)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~  449 (577)
                                                               |+++.||||||||||.++..+..+..  ..+++++.|+.
T Consensus        96 -----------------------------------------A~~~~p~il~iDEid~l~~~~~~~~~--~~~~~~~~ll~  132 (246)
T d1d2na_          96 -----------------------------------------AYKSQLSCVVVDDIERLLDYVPIGPR--FSNLVLQALLV  132 (246)
T ss_dssp             -----------------------------------------HHTSSEEEEEECCHHHHTTCBTTTTB--CCHHHHHHHHH
T ss_pred             -----------------------------------------hhhcccceeehhhhhhHhhhcccccc--hhHHHHHHHHH
Confidence                                                     88889999999999999887654332  23578889999


Q ss_pred             HHhCCCCCcCCCceEEEEEecCCchhhHHH-hhcCccccccc-------CHHHHHHHcCCCCHHHHHHHHHH
Q psy16204        450 QMDGLNSSLYEDKIIMILAATNHPYQLLTL-CLEGVVIDVNL-------DFHKISKMLEGYTGSDIANLARD  513 (577)
Q Consensus       450 ~mD~~~~~~~~~~~VlIIatTN~p~~L~~a-llrr~~i~~~v-------dl~~LA~~t~G~sgsDI~~l~~~  513 (577)
                      .+++...   ...+|+||||||+|+.|+.+ +.++|.....+       .+-.+-.....|...++..+.+.
T Consensus       133 ~l~~~~~---~~~~v~vi~tTn~~~~ld~~~~~~rF~~~i~~P~~~~r~~il~~l~~~~~~~~~~~~~i~~~  201 (246)
T d1d2na_         133 LLKKAPP---QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQ  201 (246)
T ss_dssp             HTTCCCS---TTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             HhcCCCc---cccceeeeeccCChhhccchhhcCccceEEecCCchhHHHHHHHHHhccCCChHHHHHHHHH
Confidence            9998764   34679999999999999876 45555432222       12223334455666666555443

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.86  E-value=6.9e-23  Score=209.05  Aligned_cols=156  Identities=15%  Similarity=0.210  Sum_probs=115.1

Q ss_pred             ccceeE-EecCCCCChHHHHHHHHHHhC--CeEEEEecCccccccccchHHHHHHHHHHhhhhhccccCcceeeccccCC
Q psy16204        246 FFKEAL-ERHSHGTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNG  322 (577)
Q Consensus       246 ~~k~IL-L~GPpGtGKT~LAkaLA~el~--~~fv~v~~s~l~~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~  322 (577)
                      .++|+| ||||||||||.||++||.+++  .+|+.+++++++++|+|++++.++++|+.                     
T Consensus       121 ~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~---------------------  179 (321)
T d1w44a_         121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARA---------------------  179 (321)
T ss_dssp             EESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHH---------------------
T ss_pred             cCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHH---------------------
Confidence            346655 589999999999999999986  78999999999999999999999999987                     


Q ss_pred             CCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchh
Q psy16204        323 EPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGR  402 (577)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  402 (577)
                                                                                                      
T Consensus       180 --------------------------------------------------------------------------------  179 (321)
T d1w44a_         180 --------------------------------------------------------------------------------  179 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCC---chhhHHH
Q psy16204        403 INKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH---PYQLLTL  479 (577)
Q Consensus       403 ~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~---p~~L~~a  479 (577)
                              |+.  ||||||||||.++..|+++..+...++++++||.+||++...    .+|+||||||+   ++.|+.+
T Consensus       180 --------a~~--~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~----~~v~viaatN~~~~~~~i~~~  245 (321)
T d1w44a_         180 --------MLQ--HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAAS----RGCVVIASLNPTSNDDKIVEL  245 (321)
T ss_dssp             --------HHH--CSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHH----HTCEEEEECCCCCCCHHHHHH
T ss_pred             --------Hhh--ccEEEeehhhhhccccccCCCCCcchhhhhhhhhhccccccC----CCeEEEEeCCCcccccchhhh
Confidence                    553  789999999999999977666667778999999999998754    56999999996   3557777


Q ss_pred             hhcCccccccc---------CHHHHHHHcCCC--CHHHHHHHHHHHHH
Q psy16204        480 CLEGVVIDVNL---------DFHKISKMLEGY--TGSDIANLARDAAM  516 (577)
Q Consensus       480 llrr~~i~~~v---------dl~~LA~~t~G~--sgsDI~~l~~~Aa~  516 (577)
                      ++|..+++..+         .++-|+..++||  ++.++.+++.+++.
T Consensus       246 ~~r~~Rf~~~v~v~~pd~~~r~~il~~~~~~~~~~~~~l~~~~~~~a~  293 (321)
T d1w44a_         246 VKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQRLTHTLQTSYGEHSV  293 (321)
T ss_dssp             HHHHHHHSCSEEEEECSSTTEEEEEEECBTTCCEEEEEEEEEECGGGC
T ss_pred             hhccCcccceeecCCCChHHHHHHHHHhccCccccchhhhhccCHHHH
Confidence            77765554332         233455667777  35555555554443

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=8.7e-20  Score=172.28  Aligned_cols=69  Identities=25%  Similarity=0.261  Sum_probs=61.3

Q ss_pred             CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      .+.+|++|+|++++++.|..++..+..+.+.+.++|||||||||||++|++||+++++++..+++++..
T Consensus         4 RP~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~   72 (238)
T d1in4a2           4 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV   72 (238)
T ss_dssp             SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred             CCCcHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCcccc
Confidence            456899999999999999999977665666677999999999999999999999999999999987663

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.80  E-value=5.3e-19  Score=186.55  Aligned_cols=342  Identities=16%  Similarity=0.203  Sum_probs=179.7

Q ss_pred             ccccCcHHHHHHHHHHHHCcC---------CCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc-ccccc
Q psy16204        221 NKVAGLTEAKAILQEAMVLPT---------IMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRGE  290 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl---------~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~-k~~G~  290 (577)
                      .-|+||++||+.|.-++....         +..-.+++|||.||||||||+|||.||+.+++||+.++|+.+++ +|+|+
T Consensus        14 ~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG~   93 (443)
T d1g41a_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK   93 (443)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred             CcccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceeec
Confidence            358999999999999885422         11112478999999999999999999999999999999999998 79999


Q ss_pred             h-HHHHHHHHHHhhhhhccccCccee----------eccccCCCCCccc-------hhhHHHHHHHHHhhcccccCCccc
Q psy16204        291 S-EKLVRLLFEMVSFLVGLHSNKTFY----------LVGVLNGEPTTTF-------AYNKQILQMNRRVLKGALTTAPTR  352 (577)
Q Consensus       291 ~-e~~vr~lF~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~  352 (577)
                      + +..++++++.|.+.....-...|+          ++..+.....+..       .......+....+..|.+...+..
T Consensus        94 DVesii~~L~~~a~~~v~~~e~~~V~~~~~~~~~e~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~~~~~~~~  173 (443)
T d1g41a_          94 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE  173 (443)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhHHHHHHHhcCCccccccc
Confidence            8 888999998777655433222221          2222222111111       112223333445566666544443


Q ss_pred             ccccCCCCcccccc-ccCCCCCCcchhhhhhhhcccCCCCcccC--------------CCCcchhhhhhhHHHHHhcCCe
Q psy16204        353 AENQESGPSIFSVM-VDGLGKGPWSMVAVVATHFTWGKKGTCQS--------------HEGHSGRINKNSLFQARCYAPS  417 (577)
Q Consensus       353 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~d~~~~~~~~~~~a~~~~p~  417 (577)
                      ......+....... +.+.......+..++.....-..++....              ...+...+..+++..+....  
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~i~~~ai~~v~~~~--  251 (443)
T d1g41a_         174 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNG--  251 (443)
T ss_dssp             ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHC--
T ss_pred             cccccCCCcccccccccchhhhhhhHHHhhhccCCccccceeeehHHHHHHHHHHHhhhccchhHHHHHHHHHHhccC--
Confidence            32222222111111 11111111222222222222111111110              13356667777777777755  


Q ss_pred             EEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCc----CCCceEEEEEec----CCchhhHHHhhcCcccccc
Q psy16204        418 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL----YEDKIIMILAAT----NHPYQLLTLCLEGVVIDVN  489 (577)
Q Consensus       418 IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~----~~~~~VlIIatT----N~p~~L~~allrr~~i~~~  489 (577)
                      ++|+||+|+++......+.+.....+...+|..+++.....    ....++++|++.    -.++.+.+.|..|+++...
T Consensus       252 ~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~gliPEliGRlPi~v~  331 (443)
T d1g41a_         252 IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVE  331 (443)
T ss_dssp             EEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEE
T ss_pred             ccccchhhhhhhcccCCCCCcccchhhhhhhhhccccccccccccccccchhhccccchhhcccccchhhhccceEEEEE
Confidence            99999999999988777778888999999999999855432    244567888875    3467799999999987543


Q ss_pred             c---CHHHHHH-----------------HcCC----CCHHHHHHHHHHHHHHH----------HHHHHhcCChhHHhhhh
Q psy16204        490 L---DFHKISK-----------------MLEG----YTGSDIANLARDAAMMS----------IRRKIMGQTPAQIKEIK  535 (577)
Q Consensus       490 v---dl~~LA~-----------------~t~G----~sgsDI~~l~~~Aa~~a----------irr~~~~~~~~~~~~~~  535 (577)
                      +   +-+.|.+                 .++|    |+...+..+++.|...+          +|..+.....+..-++.
T Consensus       332 L~~L~~~dL~rILtEPknsLikQy~~lf~~~gv~L~ft~~al~~iA~~A~~~n~~~~~~GAR~Lr~i~E~~l~~~~f~~p  411 (443)
T d1g41a_         332 LTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSAS  411 (443)
T ss_dssp             CCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGG
T ss_pred             ccCccHHHHHHHHHhhhhhHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHHHHHHhccCC
Confidence            3   2222211                 1134    67777888888887532          22221111000001111


Q ss_pred             c-cCCCCCCCHHHHHHHHHHhCCCCCHHHHHHH
Q psy16204        536 Q-EDIDLPVTEKDFREAIARCRKSVTAHDLSKY  567 (577)
Q Consensus       536 ~-~~~~~~It~~df~~Al~~~~psv~~~~~~~~  567 (577)
                      . ......|+.+.+++.+..   -+-.+|+++|
T Consensus       412 ~~~~~~v~Id~~~v~~~l~~---~~~~~dl~k~  441 (443)
T d1g41a_         412 DMNGQTVNIDAAYVADALGE---VVENEDLSRF  441 (443)
T ss_dssp             GCTTCEEEECHHHHHHHHTT---TTTCHHHHHH
T ss_pred             CCCCCEEEECHHHHHhhhhc---hhhcCCcccc
Confidence            1 112346888888887754   4567889887

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=4.4e-19  Score=167.84  Aligned_cols=69  Identities=22%  Similarity=0.196  Sum_probs=62.3

Q ss_pred             CCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        216 PNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       216 ~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      .+.+|++|+|++++++.|+.++.....+...+.++|||||||||||++|+++|+++++++..+++++..
T Consensus         4 RP~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~   72 (239)
T d1ixsb2           4 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE   72 (239)
T ss_dssp             CCCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccc
Confidence            457899999999999999999987766666678999999999999999999999999999999988763

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=6.8e-18  Score=169.84  Aligned_cols=149  Identities=19%  Similarity=0.172  Sum_probs=113.6

Q ss_pred             cCCCCCcccccCcHHHHHHHHHHHH---CcCCCccccc-eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccccc
Q psy16204        214 NNPNVQWNKVAGLTEAKAILQEAMV---LPTIMPEFFK-EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRG  289 (577)
Q Consensus       214 ~~~~v~~~dIiG~~~ak~~L~e~l~---~pl~~~~~~k-~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~~G  289 (577)
                      +.....-+.|+||++|++.|.+++.   ..+..+..+. .+||+||||||||+||++||+.++.+|+.++++++.+.+. 
T Consensus        15 ~l~~~L~~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~-   93 (315)
T d1r6bx3          15 NLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT-   93 (315)
T ss_dssp             HHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC-
T ss_pred             HHHHHhCCeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhh-
Confidence            3333456789999999999999884   3445555555 5899999999999999999999999999999999876432 


Q ss_pred             chHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccC
Q psy16204        290 ESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDG  369 (577)
Q Consensus       290 ~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  369 (577)
                                                 +..+.|.+++|.|+..                                     
T Consensus        94 ---------------------------~~~l~g~~~gy~g~~~-------------------------------------  109 (315)
T d1r6bx3          94 ---------------------------VSRLIGAPPGYVGFDQ-------------------------------------  109 (315)
T ss_dssp             ---------------------------CSSSCCCCSCSHHHHH-------------------------------------
T ss_pred             ---------------------------hhhhcccCCCcccccc-------------------------------------
Confidence                                       4567788888888722                                     


Q ss_pred             CCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHH
Q psy16204        370 LGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLI  449 (577)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~  449 (577)
                                                     ++.+.+.   ...+..+|++|||||++++            .+++.||+
T Consensus       110 -------------------------------~~~l~~~---~~~~~~~vvl~DeieKa~~------------~V~~~lLq  143 (315)
T d1r6bx3         110 -------------------------------GGLLTDA---VIKHPHAVLLLDEIEKAHP------------DVFNILLQ  143 (315)
T ss_dssp             -------------------------------TTHHHHH---HHHCSSEEEEEETGGGSCH------------HHHHHHHH
T ss_pred             -------------------------------CChhhHH---HHhCccchhhhcccccccc------------hHhhhhHH
Confidence                                           1222222   4556779999999999977            68999999


Q ss_pred             HHhC-----CCCCcCCCceEEEEEecCCc
Q psy16204        450 QMDG-----LNSSLYEDKIIMILAATNHP  473 (577)
Q Consensus       450 ~mD~-----~~~~~~~~~~VlIIatTN~p  473 (577)
                      .+|.     -.+...+..+.++|+|||--
T Consensus       144 ild~G~ltd~~Gr~vdf~n~iiI~Tsnig  172 (315)
T d1r6bx3         144 VMDNGTLTDNNGRKADFRNVVLVMTTNAG  172 (315)
T ss_dssp             HHHHSEEEETTTEEEECTTEEEEEEECSS
T ss_pred             hhccceecCCCCCccCccceEEEeccchh
Confidence            9974     12223466789999999954

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=6.9e-17  Score=162.88  Aligned_cols=148  Identities=22%  Similarity=0.205  Sum_probs=102.9

Q ss_pred             CCCcccccCcHHHHHHHHHHHHC---cCCCccccc-eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcccccccc
Q psy16204        217 NVQWNKVAGLTEAKAILQEAMVL---PTIMPEFFK-EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTLTSKYRG  289 (577)
Q Consensus       217 ~v~~~dIiG~~~ak~~L~e~l~~---pl~~~~~~k-~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l~~k~~G  289 (577)
                      ...-+.|+||+++++.|..++..   .+..+..+. .+||+||+|||||.+|+.||+.+   +.+|++++++++.+.+. 
T Consensus        19 ~~L~~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~-   97 (315)
T d1qvra3          19 EELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA-   97 (315)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG-
T ss_pred             HHhcCeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchh-
Confidence            34457889999999999988854   344555555 57899999999999999999998   68999999998876531 


Q ss_pred             chHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccC
Q psy16204        290 ESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDG  369 (577)
Q Consensus       290 ~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  369 (577)
                                                 +..+.|++++|+|+..                                     
T Consensus        98 ---------------------------~~~L~g~~~gyvG~~~-------------------------------------  113 (315)
T d1qvra3          98 ---------------------------VSRLIGAPPGYVGYEE-------------------------------------  113 (315)
T ss_dssp             ---------------------------GGGC-------------------------------------------------
T ss_pred             ---------------------------hhhhcCCCCCCcCccc-------------------------------------
Confidence                                       4566788888888721                                     


Q ss_pred             CCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHH
Q psy16204        370 LGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLI  449 (577)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~  449 (577)
                                                     ++.+.+.   .+.+..|||||||||++++            .+++.|++
T Consensus       114 -------------------------------~~~l~~~---~~~~p~~Vvl~DEieK~~~------------~v~~~ll~  147 (315)
T d1qvra3         114 -------------------------------GGQLTEA---VRRRPYSVILFDEIEKAHP------------DVFNILLQ  147 (315)
T ss_dssp             ---------------------------------CHHHH---HHHCSSEEEEESSGGGSCH------------HHHHHHHH
T ss_pred             -------------------------------CChHHHH---HHhCCCcEEEEehHhhcCH------------HHHHHHHH
Confidence                                           1222222   4556679999999999987            68999999


Q ss_pred             HHhCC-----CCCcCCCceEEEEEecCCchh
Q psy16204        450 QMDGL-----NSSLYEDKIIMILAATNHPYQ  475 (577)
Q Consensus       450 ~mD~~-----~~~~~~~~~VlIIatTN~p~~  475 (577)
                      .+|.-     .+......+.+||+|||--..
T Consensus       148 ~l~~g~~~~~~gr~v~~~~~i~i~tsnlG~~  178 (315)
T d1qvra3         148 ILDDGRLTDSHGRTVDFRNTVIILTSNLGSP  178 (315)
T ss_dssp             HHTTTEECCSSSCCEECTTEEEEEECCTTHH
T ss_pred             HhccCceeCCCCcEecCcceEEEEecccChH
Confidence            99852     222356688999999996443

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.66  E-value=2.8e-16  Score=147.68  Aligned_cols=72  Identities=22%  Similarity=0.206  Sum_probs=61.5

Q ss_pred             HHhhhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC-----CeEEEEecC
Q psy16204        207 LEKDILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG-----TTFFNVSSS  281 (577)
Q Consensus       207 ~~~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~-----~~fv~v~~s  281 (577)
                      .+.+|.+++.+.+++||+|++++++.|+.++...     ...++||+||||||||++|+++|++++     ..+++++++
T Consensus        10 ~~~~w~~ky~P~~~~diig~~~~~~~l~~~i~~~-----~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s   84 (231)
T d1iqpa2          10 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS   84 (231)
T ss_dssp             TTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-----CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred             hhchHHHHhCCCCHHHccCcHHHHHHHHHHHHcC-----CCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecC
Confidence            4467899999999999999999999999998643     234799999999999999999999975     478888887


Q ss_pred             cc
Q psy16204        282 TL  283 (577)
Q Consensus       282 ~l  283 (577)
                      +.
T Consensus        85 ~~   86 (231)
T d1iqpa2          85 DE   86 (231)
T ss_dssp             CH
T ss_pred             cc
Confidence            54

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=5.8e-16  Score=144.79  Aligned_cols=208  Identities=15%  Similarity=0.078  Sum_probs=130.6

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC-----eEEEEecCccc
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT-----TFFNVSSSTLT  284 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~-----~fv~v~~s~l~  284 (577)
                      +|.+++.+..++||+|++++++.|+..+....     ..++|||||||+|||++|+++|++++.     .++.+++++..
T Consensus         3 pw~ekyrP~~~~divg~~~~~~~L~~~i~~~~-----~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~   77 (227)
T d1sxjc2           3 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR   77 (227)
T ss_dssp             CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTC-----CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC
T ss_pred             chhhhhCCCCHHHccCcHHHHHHHHHHHHcCC-----CCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccC
Confidence            57888999999999999999999999986532     236999999999999999999999753     35666665543


Q ss_pred             cccccchHHHHHHHHHHhhhhhccccCcceeeccccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCcccc
Q psy16204        285 SKYRGESEKLVRLLFEMVSFLVGLHSNKTFYLVGVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFS  364 (577)
Q Consensus       285 ~k~~G~~e~~vr~lF~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  364 (577)
                      ..      ......+...                                    .  .                      
T Consensus        78 ~~------~~~~~~~~~~------------------------------------~--~----------------------   91 (227)
T d1sxjc2          78 GI------DVVRNQIKDF------------------------------------A--S----------------------   91 (227)
T ss_dssp             SH------HHHHTHHHHH------------------------------------H--H----------------------
T ss_pred             Ce------eeeecchhhc------------------------------------c--c----------------------
Confidence            21      1111111100                                    0  0                      


Q ss_pred             ccccCCCCCCcchhhhhhhhcccCCCCcccCCCCcchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHH
Q psy16204        365 VMVDGLGKGPWSMVAVVATHFTWGKKGTCQSHEGHSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFK  444 (577)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~  444 (577)
                                         .     ..                   .......||||||+|.+..            ..+
T Consensus        92 -------------------~-----~~-------------------~~~~~~kiiiiDe~d~~~~------------~~~  116 (227)
T d1sxjc2          92 -------------------T-----RQ-------------------IFSKGFKLIILDEADAMTN------------AAQ  116 (227)
T ss_dssp             -------------------B-----CC-------------------SSSCSCEEEEETTGGGSCH------------HHH
T ss_pred             -------------------c-----cc-------------------ccCCCeEEEEEeccccchh------------hHH
Confidence                               0     00                   1112335999999999865            457


Q ss_pred             HHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCcccc--cccCHHHHHHHc------CC--CCHHHHHHHHHHH
Q psy16204        445 AELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGVVID--VNLDFHKISKML------EG--YTGSDIANLARDA  514 (577)
Q Consensus       445 ~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~~i~--~~vdl~~LA~~t------~G--~sgsDI~~l~~~A  514 (577)
                      +.|+..|+...      .+++++++||.+..+++.+..++...  ..+....+.+..      +|  ++..++..+++.+
T Consensus       117 ~~Ll~~le~~~------~~~~~~~~~~~~~~i~~~i~sr~~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s  190 (227)
T d1sxjc2         117 NALRRVIERYT------KNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELS  190 (227)
T ss_dssp             HHHHHHHHHTT------TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHH
T ss_pred             HHHHHHhhhcc------cceeeccccCcHHHhHHHHHHHHhhhccccccccccccccccccccccccCCHHHHHHHHHHc
Confidence            78888888655      45789999999999999888876432  122233333322      44  4566666666654


Q ss_pred             HHHHHHHHHhcCChhHHhhhhccCCCCCCCHHHHHHHH
Q psy16204        515 AMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAI  552 (577)
Q Consensus       515 a~~airr~~~~~~~~~~~~~~~~~~~~~It~~df~~Al  552 (577)
                       ...+|+.+..+..  +...........||.+++.+++
T Consensus       191 -~Gd~R~ain~Lq~--~~~~~~~~~~~~It~~~v~e~~  225 (227)
T d1sxjc2         191 -NGDMRRVLNVLQS--CKATLDNPDEDEISDDVIYECC  225 (227)
T ss_dssp             -TTCHHHHHHHTTT--TTTTTCSSSCCCBCHHHHHHHT
T ss_pred             -CCcHHHHHHHHHH--HHHhcCCCCCCeeCHHHHHHHh
Confidence             3345555422111  0111111223568888888875

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.63  E-value=6.5e-16  Score=158.85  Aligned_cols=81  Identities=25%  Similarity=0.287  Sum_probs=59.1

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCC-------------------------ccccceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIM-------------------------PEFFKEALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~-------------------------~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      +.|+||++||+.|..++....++                         ...+.++||.||+|||||+|||+||+.++.+|
T Consensus        17 ~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~   96 (364)
T d1um8a_          17 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI   96 (364)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             CeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhcccce
Confidence            56899999999999887422111                         11346799999999999999999999999999


Q ss_pred             EEEecCcccc-ccccch-HHHHHHHHHH
Q psy16204        276 FNVSSSTLTS-KYRGES-EKLVRLLFEM  301 (577)
Q Consensus       276 v~v~~s~l~~-k~~G~~-e~~vr~lF~~  301 (577)
                      +.++++++++ +|+|.. +..+++++..
T Consensus        97 ir~D~s~~~e~gyvg~dv~~~i~~l~~~  124 (364)
T d1um8a_          97 AISDATSLTEAGYVGEDVENILTRLLQA  124 (364)
T ss_dssp             EEEEGGGCC--------CTHHHHHHHHH
T ss_pred             eehhhhhcccchhhHhhhccchhhhhhh
Confidence            9999999987 677765 4556666544

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=8.6e-15  Score=139.75  Aligned_cols=59  Identities=19%  Similarity=0.230  Sum_probs=51.1

Q ss_pred             hhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        212 LQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       212 ~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .+++.+..++|++|++++++.|...+...    .++.++||+||||+|||++|+++++++...
T Consensus         3 ~~KyrP~~~~dlig~~~~~~~L~~~i~~~----~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_           3 ARKWRPQTFADVVGQEHVLTALANGLSLG----RIHHAYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             HHHTCCSSGGGSCSCHHHHHHHHHHHHTT----CCCSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             hhhhCCCCHHHccChHHHHHHHHHHHHcC----CCCeeEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            35788889999999999999999998642    445689999999999999999999998654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=2.9e-15  Score=141.26  Aligned_cols=78  Identities=23%  Similarity=0.195  Sum_probs=66.1

Q ss_pred             hhhhhcCCCCCcccccCcHHHHHHHHHHHHC------------cCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204        209 KDILQNNPNVQWNKVAGLTEAKAILQEAMVL------------PTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFF  276 (577)
Q Consensus       209 ~~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~------------pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv  276 (577)
                      +.|.+++.+.++++|+|++++++.|.+.+..            ........+++|||||||||||++|++||+++++.++
T Consensus         2 ~lW~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2           2 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CccccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            4688899999999999999999999998853            1122233468999999999999999999999999999


Q ss_pred             EEecCccccc
Q psy16204        277 NVSSSTLTSK  286 (577)
Q Consensus       277 ~v~~s~l~~k  286 (577)
                      .+++++..++
T Consensus        82 ~~~~~~~~~~   91 (253)
T d1sxja2          82 EQNASDVRSK   91 (253)
T ss_dssp             EECTTSCCCH
T ss_pred             ccccccchhh
Confidence            9999987553

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=6.7e-14  Score=130.27  Aligned_cols=69  Identities=17%  Similarity=0.190  Sum_probs=57.1

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh------CCeEEEEecCcc
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC------GTTFFNVSSSTL  283 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el------~~~fv~v~~s~l  283 (577)
                      +|..++.+..+++|+|++++++.|+..+...     ...++||+||||||||++|+++|+++      ......++++..
T Consensus         1 ~w~~ky~P~~~~diig~~~~~~~l~~~i~~~-----~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~   75 (237)
T d1sxjd2           1 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-----NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE   75 (237)
T ss_dssp             CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT-----TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred             CcchhhCCCCHHHccCcHHHHHHHHHHHHcC-----CCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheecccc
Confidence            4778899999999999999999999988532     22469999999999999999999996      456677776654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=2.1e-13  Score=127.66  Aligned_cols=70  Identities=16%  Similarity=0.082  Sum_probs=59.5

Q ss_pred             hhhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC-----eEEEEecCccc
Q psy16204        210 DILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT-----TFFNVSSSTLT  284 (577)
Q Consensus       210 ~~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~-----~fv~v~~s~l~  284 (577)
                      +|.+++.+..++|++|++++++.|+.++...     ...++||+||||||||++|+.+|++++.     .++++++++..
T Consensus         4 pw~eKyrP~~~~d~ig~~~~~~~L~~~~~~~-----~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~   78 (224)
T d1sxjb2           4 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDG-----NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR   78 (224)
T ss_dssp             CHHHHTCCSSGGGCCSCTHHHHHHHHHHHSC-----CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC
T ss_pred             chHhHhCCCCHHHhcCCHHHHHHHHHHHHcC-----CCCeEEEECCCCCCchhhHHHHHHHHhccccccccccccccccC
Confidence            5888999999999999999999999998642     2246999999999999999999999874     47777777653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.47  E-value=2.1e-16  Score=162.51  Aligned_cols=58  Identities=19%  Similarity=0.124  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        228 EAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       228 ~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      +++..+.+++..-+......+++|||||||||||++|++||+.++.+|+++++++..+
T Consensus       135 ~~~~~i~~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs  192 (362)
T d1svma_         135 KMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRL  192 (362)
T ss_dssp             THHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTH
T ss_pred             chHHHHHHHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhh
Confidence            3444444444321222223368999999999999999999999999999999987644

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=2.3e-13  Score=127.74  Aligned_cols=57  Identities=18%  Similarity=0.124  Sum_probs=49.4

Q ss_pred             hhhcCCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204        211 ILQNNPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       211 ~~~~~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      |.+++.+.++++|+|++++++.|+.++..    ...+.++|||||||||||++|+++|+++
T Consensus         1 W~eky~P~~~~diig~~~~~~~L~~~~~~----~~~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2           1 WVDKYRPKSLNALSHNEELTNFLKSLSDQ----PRDLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CTTTTCCCSGGGCCSCHHHHHHHHTTTTC----TTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCcccCCCCHHHccCcHHHHHHHHHHHHc----CCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            56788889999999999999999887643    3344579999999999999999999997

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.42  E-value=5e-12  Score=117.47  Aligned_cols=66  Identities=14%  Similarity=0.047  Sum_probs=52.9

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCc-cccceeEEecCCCCChHHHHHHHHHHhC----CeEEEEecCccc
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMP-EFFKEALERHSHGTGKTMLAKAVATECG----TTFFNVSSSTLT  284 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~-~~~k~ILL~GPpGtGKT~LAkaLA~el~----~~fv~v~~s~l~  284 (577)
                      ..+.++|.+..++.|.+++...+..+ ..+.++||+||||||||++|++|++.+.    ..++.+++....
T Consensus        14 ~p~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~   84 (276)
T d1fnna2          14 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR   84 (276)
T ss_dssp             CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhh
Confidence            44678999999999999886544332 4457899999999999999999999984    678888887553

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.40  E-value=3.1e-12  Score=119.53  Aligned_cols=66  Identities=14%  Similarity=-0.054  Sum_probs=48.0

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCcc----ccceeEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCccc
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPE----FFKEALERHSHGTGKTMLAKAVATECG---------TTFFNVSSSTLT  284 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~----~~k~ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~l~  284 (577)
                      ..+.|.|.+..++.|...+..++....    ....++|+||||||||++++++++++.         ..++++++....
T Consensus        14 ~P~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~   92 (287)
T d1w5sa2          14 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP   92 (287)
T ss_dssp             CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeecccccc
Confidence            346788988888888887654443322    234578899999999999999999873         456667766543

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.30  E-value=1.6e-11  Score=121.73  Aligned_cols=59  Identities=22%  Similarity=0.227  Sum_probs=45.2

Q ss_pred             CCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       217 ~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      ...|.+|+||+.+|..|.-++..+-     ..++||+||||||||++||+++.-+. ++..+.++
T Consensus         3 ~~~f~~I~Gq~~~kral~laa~~~~-----~h~vLl~G~pG~GKT~lar~~~~iLp-~~~~~~~~   61 (333)
T d1g8pa_           3 VFPFSAIVGQEDMKLALLLTAVDPG-----IGGVLVFGDRGTGKSTAVRALAALLP-EIEAVEGC   61 (333)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHHHCGG-----GCCEEEECCGGGCTTHHHHHHHHHSC-CEEEETTC
T ss_pred             CCChhhccCcHHHHHHHHHHHhccC-----CCeEEEECCCCccHHHHHHHHHHhCC-CchhhccC
Confidence            4579999999999998877665431     14799999999999999999998763 23344433

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.27  E-value=7.6e-13  Score=124.41  Aligned_cols=69  Identities=19%  Similarity=0.133  Sum_probs=56.9

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccccc
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTSKY  287 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~k~  287 (577)
                      +++.+.-+++...+.|.+... .....+.+++|||+||||||||+||++||.+++.+|+.++++++...+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~   72 (273)
T d1gvnb_           4 VNFTDKQFENRLNDNLEELIQ-GKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH   72 (273)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHT-TCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTS
T ss_pred             cccChHHHHHHHHHHHHHHHh-cccCCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHh
Confidence            456677777777777777654 456677889999999999999999999999999999999998876543

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=5.5e-11  Score=117.65  Aligned_cols=78  Identities=22%  Similarity=0.290  Sum_probs=62.3

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEecCcccc--c
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVSSSTLTS--K  286 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~~s~l~~--k  286 (577)
                      .++.++|.++..+.|.+.+...     ...++||.||||||||.+++.+|...          +..++.++.+.++.  +
T Consensus        16 ~ld~~igRd~Ei~~l~~iL~r~-----~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~   90 (268)
T d1r6bx2          16 GIDPLIGREKELERAIQVLCRR-----RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTK   90 (268)
T ss_dssp             CSCCCCSCHHHHHHHHHHHTSS-----SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCC
T ss_pred             CCCcccChHHHHHHHHHHHhcC-----ccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCc
Confidence            4667999999999999988432     22589999999999999999999763          46899999999886  7


Q ss_pred             cccchHHHHHHHHHH
Q psy16204        287 YRGESEKLVRLLFEM  301 (577)
Q Consensus       287 ~~G~~e~~vr~lF~~  301 (577)
                      |.|+.|..++.+++.
T Consensus        91 ~~g~~e~r~~~i~~~  105 (268)
T d1r6bx2          91 YRGDFEKRFKALLKQ  105 (268)
T ss_dssp             CSSCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHH
Confidence            888888888877765

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.15  E-value=1.6e-10  Score=111.87  Aligned_cols=60  Identities=12%  Similarity=0.105  Sum_probs=45.9

Q ss_pred             cccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCccc
Q psy16204        222 KVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTLT  284 (577)
Q Consensus       222 dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l~  284 (577)
                      +.+|+..+.+.+.+.+..-...   ...|||+|++|||||.+|++|+....   .+++.++|..+.
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a~~---~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~   63 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKISCA---ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIP   63 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTC---CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSC
T ss_pred             CeEecCHHHHHHHHHHHHHhCC---CCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhh
Confidence            4578888888887777432111   24689999999999999999998764   689999998763

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=1e-10  Score=111.10  Aligned_cols=78  Identities=22%  Similarity=0.296  Sum_probs=63.8

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEecCcccc--c
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVSSSTLTS--K  286 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~~s~l~~--k  286 (577)
                      .++-++|.++.++.|.+.+....     ..++||+|+||||||.++..+|...          +..++.++.+.++.  +
T Consensus        20 ~ld~~igRd~Ei~~l~~iL~r~~-----k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~   94 (195)
T d1jbka_          20 KLDPVIGRDEEIRRTIQVLQRRT-----KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAK   94 (195)
T ss_dssp             CSCCCCSCHHHHHHHHHHHTSSS-----SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTC
T ss_pred             CCCCCcCcHHHHHHHHHHHhccC-----CCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCC
Confidence            46789999999999999885432     2589999999999999999999764          47899999998875  6


Q ss_pred             cccchHHHHHHHHHH
Q psy16204        287 YRGESEKLVRLLFEM  301 (577)
Q Consensus       287 ~~G~~e~~vr~lF~~  301 (577)
                      |.|+.|..++.+++.
T Consensus        95 ~rG~~E~rl~~il~e  109 (195)
T d1jbka_          95 YRGEFEERLKGVLND  109 (195)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH
Confidence            777888877777754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=6.5e-10  Score=104.23  Aligned_cols=52  Identities=15%  Similarity=0.199  Sum_probs=43.6

Q ss_pred             CCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCc
Q psy16204        415 APSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGV  484 (577)
Q Consensus       415 ~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~  484 (577)
                      ...|++|||+|.+..            ..++.||..|+...      +++++|++||.++.|++.+..|.
T Consensus       108 ~~kviIide~d~l~~------------~a~n~Llk~lEep~------~~~~fIl~t~~~~~ll~tI~SRc  159 (207)
T d1a5ta2         108 GAKVVWVTDAALLTD------------AAANALLKTLEEPP------AETWFFLATREPERLLATLRSRC  159 (207)
T ss_dssp             SCEEEEESCGGGBCH------------HHHHHHHHHHTSCC------TTEEEEEEESCGGGSCHHHHTTS
T ss_pred             ccceEEechhhhhhh------------hhhHHHHHHHHhhc------ccceeeeeecChhhhhhhhccee
Confidence            456999999999976            56899999999865      45899999999999888887664

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.95  E-value=5.9e-09  Score=107.52  Aligned_cols=79  Identities=20%  Similarity=0.298  Sum_probs=56.7

Q ss_pred             CCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh----------CCeEEEEecCcccc--
Q psy16204        218 VQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC----------GTTFFNVSSSTLTS--  285 (577)
Q Consensus       218 v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el----------~~~fv~v~~s~l~~--  285 (577)
                      -.++-++|.+..++.|.+.+...     ..+++||.|+||||||.|+..||...          +..++.++.+.+..  
T Consensus        19 g~ld~~~gr~~ei~~~~~~L~r~-----~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~   93 (387)
T d1qvra2          19 GKLDPVIGRDEEIRRVIQILLRR-----TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGA   93 (387)
T ss_dssp             TCSCCCCSCHHHHHHHHHHHHCS-----SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------
T ss_pred             CCCCCCcCcHHHHHHHHHHHhcC-----CCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhccc
Confidence            34678999999999999998642     22578999999999999999999764          35799999998886  


Q ss_pred             ccccchHHHHHHHHHH
Q psy16204        286 KYRGESEKLVRLLFEM  301 (577)
Q Consensus       286 k~~G~~e~~vr~lF~~  301 (577)
                      +|.|+.+..+..+...
T Consensus        94 ~~~g~~e~r~~~i~~~  109 (387)
T d1qvra2          94 KYRGEFEERLKAVIQE  109 (387)
T ss_dssp             ----CHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHH
Confidence            6778888877766654

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.78  E-value=3.8e-08  Score=92.84  Aligned_cols=65  Identities=23%  Similarity=0.267  Sum_probs=49.2

Q ss_pred             CCCCccccc-C--cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC---CeEEEEecCcc
Q psy16204        216 PNVQWNKVA-G--LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG---TTFFNVSSSTL  283 (577)
Q Consensus       216 ~~v~~~dIi-G--~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~s~l  283 (577)
                      |+.+|++.+ |  ...|.+.+.+++..|-   ..++.++||||+|||||.|+.++|+++.   ..++++++.++
T Consensus         5 ~~~tFdnF~vg~~N~~a~~~~~~~~~~~~---~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~   75 (213)
T d1l8qa2           5 PKYTLENFIVGEGNRLAYEVVKEALENLG---SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF   75 (213)
T ss_dssp             TTCCSSSCCCCTTTHHHHHHHHHHHHTTT---TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCChhhccCCCcHHHHHHHHHHHHhCcC---CCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHH
Confidence            566788854 5  6667777777776642   2345699999999999999999999873   56777777654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=2.7e-08  Score=93.12  Aligned_cols=50  Identities=12%  Similarity=0.159  Sum_probs=41.5

Q ss_pred             eEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhcCc
Q psy16204        417 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLEGV  484 (577)
Q Consensus       417 ~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allrr~  484 (577)
                      -|++|||+|.|..            ..++.||..|+...      .++++|.+||.++.|++.+..|.
T Consensus        81 KviIId~ad~l~~------------~aqNaLLK~LEEPp------~~t~fiLit~~~~~ll~TI~SRC  130 (198)
T d2gnoa2          81 KYVIVHDCERMTQ------------QAANAFLKALEEPP------EYAVIVLNTRRWHYLLPTIKSRV  130 (198)
T ss_dssp             EEEEETTGGGBCH------------HHHHHTHHHHHSCC------TTEEEEEEESCGGGSCHHHHTTS
T ss_pred             EEEEEeCccccch------------hhhhHHHHHHhCCC------CCceeeeccCChhhCHHHHhcce
Confidence            5999999999976            56899999999866      34788888999998877777665

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.47  E-value=2.5e-06  Score=78.17  Aligned_cols=62  Identities=13%  Similarity=0.075  Sum_probs=52.1

Q ss_pred             CCCCCcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcccc
Q psy16204        215 NPNVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLTS  285 (577)
Q Consensus       215 ~~~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~~  285 (577)
                      .|....++++|.++..+.|.+..         .+.++++||+|+|||+|++.++++++..+..+++.....
T Consensus         6 ~p~~~~~~f~GR~~el~~l~~~~---------~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~~~   67 (283)
T d2fnaa2           6 SPKDNRKDFFDREKEIEKLKGLR---------APITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEE   67 (283)
T ss_dssp             SCCCSGGGSCCCHHHHHHHHHTC---------SSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTT
T ss_pred             CCCCChhhCCChHHHHHHHHhcc---------CCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEeccccc
Confidence            45556799999999999887631         257899999999999999999999999999998876644

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.27  E-value=3.2e-06  Score=73.93  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=26.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSS  280 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~  280 (577)
                      .|+|.||+|+|||+|++.|+..++...-.+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~   33 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWT   33 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEE
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEE
Confidence            38999999999999999999999866544433

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=5.1e-07  Score=76.28  Aligned_cols=31  Identities=16%  Similarity=0.418  Sum_probs=28.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      +.|+|.||||||||++|+.||+.++++|+..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~   33 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS   33 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence            5789999999999999999999999998743

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.12  E-value=6.8e-07  Score=77.03  Aligned_cols=39  Identities=23%  Similarity=0.167  Sum_probs=33.1

Q ss_pred             ccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        244 PEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       244 ~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      +-+.+.|+|.||||||||+||++||+.++.+++......
T Consensus         4 ~~~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~   42 (192)
T d1lw7a2           4 PFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGRE   42 (192)
T ss_dssp             GGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHH
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHH
Confidence            334588999999999999999999999999988665543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.95  E-value=1.8e-06  Score=74.48  Aligned_cols=31  Identities=35%  Similarity=0.551  Sum_probs=28.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      ..|+|.||||||||++|+.||+.++.+++.+
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~   35 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINV   35 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEec
Confidence            3688999999999999999999999998753

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.86  E-value=2.5e-06  Score=74.02  Aligned_cols=36  Identities=28%  Similarity=0.306  Sum_probs=32.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      +-|+|.||||||||++|++||+.++.+++.++...+
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~   40 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL   40 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHH
Confidence            347899999999999999999999999999987644

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.85  E-value=3.4e-06  Score=74.85  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=29.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      |+|+|.|+||+|||++++.||+.+|++|+.++
T Consensus         1 k~I~liG~~GsGKsTi~k~La~~l~~~~~d~d   32 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSD   32 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCEEecC
Confidence            46889999999999999999999999998643

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.78  E-value=5.3e-06  Score=73.62  Aligned_cols=31  Identities=19%  Similarity=0.354  Sum_probs=28.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      +.|+|.|+||||||++|+.||+.+|++|+..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~   33 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDT   33 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence            4688899999999999999999999998753

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.76  E-value=9.1e-06  Score=69.88  Aligned_cols=34  Identities=6%  Similarity=0.172  Sum_probs=30.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      +-|+|.|+||+|||++|++||+.++.+++.++..
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d   37 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD   37 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecc
Confidence            4588999999999999999999999998888754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.71  E-value=1.1e-05  Score=68.91  Aligned_cols=29  Identities=21%  Similarity=0.292  Sum_probs=25.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFF  276 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv  276 (577)
                      +-|+|.||||||||++|++||+.++..++
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~   31 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAY   31 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            35899999999999999999999987654

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.69  E-value=8.2e-06  Score=71.98  Aligned_cols=30  Identities=20%  Similarity=0.387  Sum_probs=26.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      .|+|.|+||||||++++.||+.++.+|+..
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~   32 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT   32 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence            366779999999999999999999999753

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=1e-05  Score=69.93  Aligned_cols=32  Identities=22%  Similarity=0.286  Sum_probs=27.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEe
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVS  279 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~  279 (577)
                      +-++|.||||||||++|+.||+.++.+++..+
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d   38 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD   38 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCeechh
Confidence            44788999999999999999999998876543

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=3.1e-05  Score=69.62  Aligned_cols=35  Identities=11%  Similarity=0.191  Sum_probs=28.7

Q ss_pred             CccccceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        243 MPEFFKEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       243 ~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .|....-|+|.||||+|||++|+.||+.+|..++.
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is   38 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS   38 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            33444568899999999999999999999886644

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.56  E-value=0.00036  Score=63.72  Aligned_cols=34  Identities=21%  Similarity=0.226  Sum_probs=27.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      .-++++|+||+|||++|..+|..+   +.++.+++..
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e   63 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVENACANKERAILFAYE   63 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeecc
Confidence            347999999999999999999886   4566677654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.56  E-value=2.5e-05  Score=67.44  Aligned_cols=28  Identities=32%  Similarity=0.313  Sum_probs=24.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      ..|+|.||||||||++|+.||+.++...
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~~l~~~~   33 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAAELDGFQ   33 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTTEE
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHhCCCc
Confidence            3599999999999999999999987533

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=2.2e-05  Score=67.27  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=22.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      ++|+|+||||||||+|+++++..+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            579999999999999999999887

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.49  E-value=1.4e-05  Score=68.66  Aligned_cols=25  Identities=16%  Similarity=0.204  Sum_probs=22.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      .|+|.|+||+|||++|++||+.++.
T Consensus         8 ~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           8 TIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4789999999999999999999864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.46  E-value=3.8e-05  Score=67.45  Aligned_cols=29  Identities=17%  Similarity=0.237  Sum_probs=26.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .|+|.||||+|||++|+.||+.+|.+++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~   30 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPHIS   30 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceec
Confidence            37899999999999999999999887654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.42  E-value=5.6e-05  Score=67.57  Aligned_cols=31  Identities=13%  Similarity=0.176  Sum_probs=27.0

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      |.-|++.||||+|||++|+.||+.+|..++.
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~g~~~i~   36 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS   36 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence            4578999999999999999999999876543

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.35  E-value=6.4e-05  Score=67.13  Aligned_cols=28  Identities=21%  Similarity=0.189  Sum_probs=24.7

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      |+|.||||+|||++|+.||+.+|.+++.
T Consensus         6 iil~G~pGSGKsT~a~~La~~~g~~~i~   33 (190)
T d1ak2a1           6 AVLLGPPGAGKGTQAPKLAKNFCVCHLA   33 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            5678999999999999999999877644

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=2.2e-05  Score=69.11  Aligned_cols=27  Identities=19%  Similarity=0.076  Sum_probs=23.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      .-|+|+|+||+|||++|+.||+.++.+
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~~l~~~   46 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEEYLVCH   46 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            346789999999999999999998643

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.34  E-value=4.8e-05  Score=67.48  Aligned_cols=29  Identities=24%  Similarity=0.239  Sum_probs=25.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .|+|.||||||||++|+.||+.+|+.++.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~   30 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQIS   30 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence            47889999999999999999999887654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.30  E-value=5.7e-05  Score=67.57  Aligned_cols=33  Identities=15%  Similarity=0.220  Sum_probs=27.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      .|+|.||||||||++|+.||+.+|.+++  +..++
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~~~~~i--s~~~~   37 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKYQLAHI--SAGDL   37 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHCCEEC--CHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcEE--ehhHH
Confidence            5889999999999999999999988864  44444

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=8e-05  Score=66.67  Aligned_cols=33  Identities=24%  Similarity=0.255  Sum_probs=27.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      -|.+.||||+||+++|+.||+.+|.++  ++..++
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~--iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHL--LDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcE--ECHHHH
Confidence            467889999999999999999998876  444433

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.29  E-value=7.9e-05  Score=66.20  Aligned_cols=29  Identities=21%  Similarity=0.273  Sum_probs=26.0

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .|+|.||||+|||++|+.||+.+|.+++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is   30 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPHIS   30 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceee
Confidence            37889999999999999999999887664

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=9.2e-05  Score=65.90  Aligned_cols=29  Identities=14%  Similarity=0.134  Sum_probs=25.2

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEEE
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFNV  278 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v  278 (577)
                      |+|.||||+|||++|+.||+.+|.+++..
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g~~~i~~   33 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFHAAHLAT   33 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceEec
Confidence            67889999999999999999998775443

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.22  E-value=0.0001  Score=67.01  Aligned_cols=34  Identities=21%  Similarity=0.247  Sum_probs=27.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      .|+|.||||+|||++|+.||+.+|.++  ++..+++
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~g~~~--is~gdll   41 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHFELKH--LSSGDLL   41 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHBCCEE--EEHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence            577889999999999999999998765  4554443

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.0001  Score=65.12  Aligned_cols=29  Identities=14%  Similarity=0.115  Sum_probs=25.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .|+|.||||+|||++|+.||+.++..++.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~   30 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS   30 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence            37889999999999999999999877554

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.19  E-value=0.00012  Score=65.86  Aligned_cols=35  Identities=23%  Similarity=0.299  Sum_probs=28.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCccc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTLT  284 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l~  284 (577)
                      +-|+|.||||+|||++|+.||+.+|.++  +++.+++
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~~g~~~--is~g~ll   43 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQKYGYTH--LSTGDLL   43 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTCCEE--EEHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCee--EeccHHH
Confidence            4588999999999999999999998765  4555543

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.18  E-value=0.00012  Score=66.13  Aligned_cols=27  Identities=26%  Similarity=0.420  Sum_probs=23.8

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFF  276 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv  276 (577)
                      |.+-||||||||++|+.||+++|.+++
T Consensus         6 IaIdGp~GsGKgT~ak~La~~lg~~~i   32 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDFGFTYL   32 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            446699999999999999999998854

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.17  E-value=0.00024  Score=60.20  Aligned_cols=38  Identities=21%  Similarity=0.246  Sum_probs=29.5

Q ss_pred             cccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        245 EFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       245 ~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      +-++..||.+|+|+|||.++-.++.+.+..++.+-...
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~P~~   43 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSV   43 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHHHTTTCCEEEEESCH
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEcChH
Confidence            44577899999999999998777777777766666543

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00015  Score=64.51  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=25.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFF  276 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv  276 (577)
                      -|+|.||||+|||++|+.||+.+|...+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~g~~~i   30 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKYGYTHL   30 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceE
Confidence            5789999999999999999999987654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.0032  Score=59.18  Aligned_cols=75  Identities=11%  Similarity=0.118  Sum_probs=42.2

Q ss_pred             cchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHH
Q psy16204        399 HSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLT  478 (577)
Q Consensus       399 d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~  478 (577)
                      |...++++.+..++.....+||||=......       +...-+-+..+...+...... .....++|+-++...+.+..
T Consensus        75 d~~~~l~~~~~~a~~~~~d~ilIDTaGr~~~-------d~~~~~el~~l~~~~~~~~~~-~p~~~~LVl~a~~~~~~~~~  146 (211)
T d2qy9a2          75 DSASVIFDAIQAAKARNIDVLIADTAGRLQN-------KSHLMEELKKIVRVMKKLDVE-APHEVMLTIDASTGQNAVSQ  146 (211)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEECCCCCGGG-------HHHHHHHHHHHHHHHTTTCTT-CCSEEEEEEEGGGTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEeccCCCccc-------cHHHHHHHHHHHHHHhhhccc-CcceeeeehhcccCcchHHH
Confidence            3344555555556667778999997654432       222222233444444443321 13366888888888887655


Q ss_pred             Hhh
Q psy16204        479 LCL  481 (577)
Q Consensus       479 all  481 (577)
                      +..
T Consensus       147 ~~~  149 (211)
T d2qy9a2         147 AKL  149 (211)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            443

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.10  E-value=0.0043  Score=57.83  Aligned_cols=32  Identities=16%  Similarity=0.179  Sum_probs=25.9

Q ss_pred             eEEecCCCCChHHHHHHHHHHh----CCeEEEEecC
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC----GTTFFNVSSS  281 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s  281 (577)
                      ++|.|+||+|||+++..+|..+    |.++.++++.
T Consensus        38 ~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E   73 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             EEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence            6899999999999998887542    5677777764

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.07  E-value=0.00019  Score=60.80  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=24.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      -|+|+|+||+|||++|+.|+.... .++.++..+
T Consensus         4 lIii~G~pGsGKTTla~~L~~~~~-~~~~~~~d~   36 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAKNP-GFYNINRDD   36 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHST-TEEEECHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC-CCEEechHH
Confidence            478999999999999999977643 244555543

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.04  E-value=0.0033  Score=55.66  Aligned_cols=52  Identities=15%  Similarity=0.180  Sum_probs=33.0

Q ss_pred             cchhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhC
Q psy16204        399 HSGRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG  453 (577)
Q Consensus       399 d~~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~  453 (577)
                      +...++..+...+..+.|.+++||-++.+....   .......+....++.....
T Consensus       109 ~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~---~~~~~~~~~~~~~~~~~~~  160 (242)
T d1tf7a1         109 DLSALIERINYAIQKYRARRVSIDSVTSVFQQY---DASSVVRRELFRLVARLKQ  160 (242)
T ss_dssp             HHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT---CCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhccchhhhhHHHHHHHhc---cChhHHHHHHHHHHHHHHh
Confidence            334444555555778889999999999887633   2234444555666655554

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.91  E-value=0.0034  Score=59.91  Aligned_cols=51  Identities=8%  Similarity=-0.135  Sum_probs=38.6

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      ...+++|.+..++.|.+.+..-- .. -..-|.+||..|+|||+||+.+.+..
T Consensus        18 ~~~~~~gR~~~~~~i~~~L~~~~-~~-~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          18 KQMTCYIREYHVDRVIKKLDEMC-DL-DSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHT-TS-SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCceeCcHHHHHHHHHHHHhcc-CC-CceEEEEECCCCCCHHHHHHHHHHhh
Confidence            34568899999999999884311 11 12357899999999999999998773

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.87  E-value=0.0002  Score=63.45  Aligned_cols=32  Identities=13%  Similarity=0.031  Sum_probs=25.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC---CeEEEEec
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG---TTFFNVSS  280 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~~  280 (577)
                      -|+|+|.||+|||++|++||+.++   .....++.
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~   38 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV   38 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcc
Confidence            478999999999999999998875   34444444

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.00026  Score=63.62  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=27.7

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHhCCeEEEEecCcc
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATECGTTFFNVSSSTL  283 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~l  283 (577)
                      +.-|+|+|+||||||++|+.++...+..+  ++..++
T Consensus        14 p~liil~G~pGsGKST~a~~l~~~~~~~~--i~~D~~   48 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL   48 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTGGGTCEE--EEHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhcCCEE--EchHHH
Confidence            45689999999999999999998887654  444433

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.83  E-value=0.0027  Score=60.81  Aligned_cols=23  Identities=22%  Similarity=0.140  Sum_probs=20.6

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +-|.||.|+|||+|.+.|+.-..
T Consensus        35 ~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          35 LVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCChHHHHHHHHHcCCC
Confidence            67999999999999999997654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.81  E-value=0.00026  Score=60.76  Aligned_cols=25  Identities=16%  Similarity=0.134  Sum_probs=22.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +-|+|.|+||||||++++.|++.++
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999885

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.011  Score=54.65  Aligned_cols=23  Identities=30%  Similarity=0.345  Sum_probs=20.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -.+|+|+||+|||+++-.+|..+
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46899999999999999888764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.71  E-value=0.0053  Score=57.35  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=25.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      +-++|.||+|+|||+.+--||..+   |..+.-+.+..+
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   45 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF   45 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccc
Confidence            568999999999999776667654   455555555443

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.65  E-value=0.0036  Score=63.31  Aligned_cols=49  Identities=14%  Similarity=0.154  Sum_probs=40.6

Q ss_pred             CCCcccccCcHHHHHHHHHHHHCcCCCccccce-eEEecCCCCChHHHHHHHHHHhC
Q psy16204        217 NVQWNKVAGLTEAKAILQEAMVLPTIMPEFFKE-ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       217 ~v~~~dIiG~~~ak~~L~e~l~~pl~~~~~~k~-ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ...+++++-.....+.+++.+..+       .| ||+.||+|+|||++..++-.++.
T Consensus       134 ~~~l~~LG~~~~~~~~l~~l~~~~-------~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         134 RLDLHSLGMTAHNHDNFRRLIKRP-------HGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             CCCGGGSCCCHHHHHHHHHHHTSS-------SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             chhhhhhcccHHHHHHHHHHHhhh-------hceEEEEcCCCCCccHHHHHHhhhhc
Confidence            356788888888889999888554       34 78999999999999999988874

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.00053  Score=58.45  Aligned_cols=23  Identities=30%  Similarity=0.176  Sum_probs=21.2

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.|++|+|||+|++.|++++
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999876

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0027  Score=60.46  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=20.2

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +.|.||.|||||+|.+.|+.-..
T Consensus        29 ~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          29 VVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCChHHHHHHHHhcCCC
Confidence            67999999999999999986553

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.52  E-value=0.026  Score=52.79  Aligned_cols=40  Identities=25%  Similarity=0.228  Sum_probs=27.5

Q ss_pred             ccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        244 PEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       244 ~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      +..+.-++|.||+|+|||+.+--||..+   +..+.-+.+..+
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~   50 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF   50 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeeccc
Confidence            3445678999999999999766667554   455555555443

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.49  E-value=0.0081  Score=57.38  Aligned_cols=65  Identities=17%  Similarity=0.115  Sum_probs=38.4

Q ss_pred             hhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHH-hCCCCCcCCCceEEEEEecCCchhhHHHh
Q psy16204        402 RINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQM-DGLNSSLYEDKIIMILAATNHPYQLLTLC  480 (577)
Q Consensus       402 ~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~m-D~~~~~~~~~~~VlIIatTN~p~~L~~al  480 (577)
                      ..-+-++.+|-...|.|||+||--.-        -+...+..+..+|..+ ...+        +-||.+|...+.+...+
T Consensus       144 qkQRv~IAraL~~~P~iLllDEPt~~--------LD~~~~~~i~~~l~~l~~~~g--------~tvi~vTHd~~~~~~~~  207 (240)
T d1g2912         144 QRQRVALGRAIVRKPQVFLMDEPLSN--------LDAKLRVRMRAELKKLQRQLG--------VTTIYVTHDQVEAMTMG  207 (240)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEECTTTT--------SCHHHHHHHHHHHHHHHHHHT--------CEEEEEESCHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCCCEEEecCCCcc--------cCHHHHHHHHHHHHHHHhccC--------CEEEEEcCCHHHHHHhC
Confidence            34455667788899999999996422        2333333333344333 3222        45777888777766655


Q ss_pred             hc
Q psy16204        481 LE  482 (577)
Q Consensus       481 lr  482 (577)
                      -+
T Consensus       208 dr  209 (240)
T d1g2912         208 DR  209 (240)
T ss_dssp             SE
T ss_pred             CE
Confidence            44

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.48  E-value=0.0034  Score=58.89  Aligned_cols=37  Identities=22%  Similarity=0.060  Sum_probs=21.8

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      +.-++|.||+|+|||+.+--||..+   +..+.-+.+..+
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~   51 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVY   51 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeecc
Confidence            4557899999999999766666554   445555555443

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.45  E-value=0.0006  Score=58.69  Aligned_cols=33  Identities=15%  Similarity=0.075  Sum_probs=26.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCC---eEEEEec
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGT---TFFNVSS  280 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~---~fv~v~~  280 (577)
                      +-++|.|+||+|||++++.||+.++.   .+..++.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~   37 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY   37 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            35789999999999999999999853   4444443

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.35  E-value=0.01  Score=56.23  Aligned_cols=64  Identities=20%  Similarity=0.216  Sum_probs=38.6

Q ss_pred             hhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHHhCCCCCcCCCceEEEEEecCCchhhHHHhhc
Q psy16204        403 INKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPYQLLTLCLE  482 (577)
Q Consensus       403 ~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~mD~~~~~~~~~~~VlIIatTN~p~~L~~allr  482 (577)
                      ..+=++..+-...|.||++||--.        +-+...++.+..++..+....        .-||.+|...+.+...+-|
T Consensus       139 ~qrv~iA~al~~~p~illLDEPt~--------gLD~~~~~~i~~~i~~~~~~g--------~tii~~tH~l~~~~~~~dr  202 (238)
T d1vpla_         139 VRKLLIARALMVNPRLAILDEPTS--------GLDVLNAREVRKILKQASQEG--------LTILVSSHNMLEVEFLCDR  202 (238)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESTTT--------TCCHHHHHHHHHHHHHHHHTT--------CEEEEEECCHHHHTTTCSE
T ss_pred             HHHHHHHHHHhcCCCEEEecCCCC--------CCCHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHHHHhCCE
Confidence            344456667788999999999532        223334444555555554322        3566788877776655433

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.32  E-value=0.00097  Score=61.72  Aligned_cols=38  Identities=11%  Similarity=0.125  Sum_probs=32.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh----CCeEEEEecCcccc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC----GTTFFNVSSSTLTS  285 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el----~~~fv~v~~s~l~~  285 (577)
                      .-|+|.|.||+|||+||++|++.+    +.+++.+++..+..
T Consensus        25 ~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~   66 (208)
T d1m7ga_          25 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF   66 (208)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence            458999999999999999999765    67889998887654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0042  Score=59.80  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=29.3

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      +-++|+||||+|||+||-.++..+   +..+++++...-
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~   93 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA   93 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccc
Confidence            347899999999999999888776   467788887653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.28  E-value=0.0064  Score=57.70  Aligned_cols=34  Identities=9%  Similarity=0.043  Sum_probs=24.6

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCC--eEEEEecCcc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGT--TFFNVSSSTL  283 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~--~fv~v~~s~l  283 (577)
                      +-|.||.|||||+|++.|+.-...  =-+.++.-++
T Consensus        34 ~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i   69 (230)
T d1l2ta_          34 VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT   69 (230)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             EEEECCCCCCcchhhHhccCCCCCCcceeEECCEEc
Confidence            689999999999999999875432  1244554443

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.28  E-value=0.01  Score=54.38  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=23.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      +.+++.+|+|+|||+++-..+..+   +...+.+-..
T Consensus        59 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~Pt   95 (237)
T d1gkub1          59 ESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPT   95 (237)
T ss_dssp             CCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESC
T ss_pred             CCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEecc
Confidence            578999999999998766555433   4455555553

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0067  Score=57.76  Aligned_cols=35  Identities=17%  Similarity=0.078  Sum_probs=26.2

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCe--EEEEecCcc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTT--FFNVSSSTL  283 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~--fv~v~~s~l  283 (577)
                      -+.+.||+|+|||+|++.|+..+...  -+.++..++
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i   67 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL   67 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEe
Confidence            37899999999999999999876432  245555444

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.28  E-value=0.0071  Score=56.34  Aligned_cols=36  Identities=25%  Similarity=0.164  Sum_probs=26.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      +-++|.||+|+|||+.+--||..+   +..+.-+.+..+
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   49 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ   49 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence            346889999999999777777655   556666666544

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.25  E-value=0.0023  Score=55.52  Aligned_cols=44  Identities=14%  Similarity=-0.018  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        228 EAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       228 ~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      +.++.|...+... . +.-+--|-+.||+|+|||+||+.|++.++.
T Consensus         5 ~~~~~~~~~~~~~-~-~~~~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_           5 DRIDFLCKTILAI-K-TAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             HHHHHHHHHHHTS-C-CSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-c-CCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4455555555332 1 111223669999999999999999988763

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.18  E-value=0.0095  Score=57.00  Aligned_cols=23  Identities=22%  Similarity=0.119  Sum_probs=20.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+.|.||.|+|||+|++.|+.-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            36899999999999999999754

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.16  E-value=0.03  Score=50.67  Aligned_cols=52  Identities=23%  Similarity=0.176  Sum_probs=36.5

Q ss_pred             cccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhCCeEEEEecC
Q psy16204        222 KVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECGTTFFNVSSS  281 (577)
Q Consensus       222 dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s  281 (577)
                      ++--.+-.++.+..++..        +..++.+|+|+|||.+|-.++.+++.+.+.+-..
T Consensus        68 ~~~Lr~yQ~eav~~~~~~--------~~~ll~~~tG~GKT~~a~~~~~~~~~~~Liv~p~  119 (206)
T d2fz4a1          68 EISLRDYQEKALERWLVD--------KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT  119 (206)
T ss_dssp             CCCCCHHHHHHHHHHTTT--------SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred             CCCcCHHHHHHHHHHHhC--------CCcEEEeCCCCCceehHHhHHHHhcCceeEEEcc
Confidence            344555556666555421        2457889999999999999999998776665543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0081  Score=57.35  Aligned_cols=64  Identities=25%  Similarity=0.337  Sum_probs=38.3

Q ss_pred             hhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHH-hCCCCCcCCCceEEEEEecCCchhhHHH
Q psy16204        401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQM-DGLNSSLYEDKIIMILAATNHPYQLLTL  479 (577)
Q Consensus       401 ~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~m-D~~~~~~~~~~~VlIIatTN~p~~L~~a  479 (577)
                      |..-+-++.+|-...|.|||+||--.-        -+...+..+..+|..+ +...        +-||.+|...+.+...
T Consensus       144 G~~QRvaiAraL~~~P~lLllDEPt~~--------LD~~~~~~i~~~l~~l~~~~g--------~tvi~vTHdl~~~~~~  207 (240)
T d3dhwc1         144 GQKQRVAIARALASNPKVLLCDEATSA--------LDPATTRSILELLKDINRRLG--------LTILLITHEMDVVKRI  207 (240)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEESGGGS--------SCHHHHHHHHHHHHHHHHHHC--------CEEEEEBSCHHHHHHH
T ss_pred             HHHHHHHHhhhhccCCCeEEecccccc--------CCHHHhhHHHHHHHHHHhccC--------CEEEEEcCCHHHHHHh
Confidence            334455667788899999999996432        2333334444444444 3322        4577777777766554


Q ss_pred             h
Q psy16204        480 C  480 (577)
Q Consensus       480 l  480 (577)
                      +
T Consensus       208 ~  208 (240)
T d3dhwc1         208 C  208 (240)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.0018  Score=58.46  Aligned_cols=29  Identities=24%  Similarity=0.260  Sum_probs=24.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      .|+|.||+|+|||+|++.|++.++.-|..
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~~~~~   30 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSSIFGF   30 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTTTEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCCceeE
Confidence            47899999999999999999998755543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.05  E-value=0.004  Score=61.52  Aligned_cols=40  Identities=18%  Similarity=0.268  Sum_probs=30.9

Q ss_pred             cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        226 LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       226 ~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .++....|..++...       +++|+.|++|+|||++.++|+....
T Consensus       152 ~~~~~~~l~~~v~~~-------~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         152 KEQAISAIKDGIAIG-------KNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             HHHHHHHHHHHHHHT-------CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHHHHHhC-------CCEEEEeeccccchHHHHHHhhhcc
Confidence            345555666666443       5899999999999999999998764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.04  E-value=0.0018  Score=57.91  Aligned_cols=27  Identities=30%  Similarity=0.395  Sum_probs=23.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      -|+|.||+|+|||+|++.|+++....|
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~~~~   29 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYPDSF   29 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCcce
Confidence            489999999999999999999976444

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.01  E-value=0.0046  Score=59.94  Aligned_cols=36  Identities=14%  Similarity=0.099  Sum_probs=29.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      +-+.|+||+|+|||++|-.++..+   +...++++...-
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~   99 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHA   99 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             eeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCcc
Confidence            447899999999999998777655   678888888754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.013  Score=58.43  Aligned_cols=35  Identities=20%  Similarity=0.176  Sum_probs=25.2

Q ss_pred             cHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHH
Q psy16204        226 LTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       226 ~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA  268 (577)
                      .+..+..+..++..        +-++++||||||||+++..+.
T Consensus       150 ~~~Q~~A~~~al~~--------~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         150 INWQKVAAAVALTR--------RISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             CCHHHHHHHHHHTB--------SEEEEECCTTSTHHHHHHHHH
T ss_pred             ccHHHHHHHHHHcC--------CeEEEEcCCCCCceehHHHHH
Confidence            45666667766633        247899999999999876543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.95  E-value=0.013  Score=53.75  Aligned_cols=22  Identities=32%  Similarity=0.317  Sum_probs=19.9

Q ss_pred             eEEecCCCCChHHHHHHHHHHh
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +.|.||.|+|||+|.+.|+..+
T Consensus        30 ~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          30 VNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCChHHHHHHHHhccc
Confidence            6799999999999999998655

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.95  E-value=0.0081  Score=48.95  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=21.7

Q ss_pred             ceeEEecCCCCChHHHHH-HHHHHh---CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAK-AVATEC---GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAk-aLA~el---~~~fv~v~~s  281 (577)
                      +.++|.+|||+|||..+- ++...+   +..++.+...
T Consensus         8 ~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p~   45 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPT   45 (140)
T ss_dssp             CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeeecc
Confidence            568999999999996663 333332   3444444443

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.93  E-value=0.0077  Score=57.20  Aligned_cols=66  Identities=17%  Similarity=0.199  Sum_probs=38.7

Q ss_pred             hhhhhhhHHHHHhcCCeEEEEccccccccCCCCCChhHHHHHHHHHHHHHH-hCCCCCcCCCceEEEEEecCCchhhHHH
Q psy16204        401 GRINKNSLFQARCYAPSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQM-DGLNSSLYEDKIIMILAATNHPYQLLTL  479 (577)
Q Consensus       401 ~~~~~~~~~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~~~v~~~LL~~m-D~~~~~~~~~~~VlIIatTN~p~~L~~a  479 (577)
                      |..-+-++.+|-...|.||++||--.        +-+...+..+..++..+ +...        +-||.+|..++.....
T Consensus       131 G~~QRvaiAraL~~~P~iLllDEPts--------~LD~~~~~~i~~~l~~l~~~~g--------~tii~vtHd~~~~~~~  194 (229)
T d3d31a2         131 GEQQRVALARALVTNPKILLLDEPLS--------ALDPRTQENAREMLSVLHKKNK--------LTVLHITHDQTEARIM  194 (229)
T ss_dssp             HHHHHHHHHHHTTSCCSEEEEESSST--------TSCHHHHHHHHHHHHHHHHHTT--------CEEEEEESCHHHHHHH
T ss_pred             HHhcchhhhhhhhccCCceeecCCCc--------CCCHHHHHHHHHHHHHHHhcCC--------cEEEEEcCCHHHHHHh
Confidence            33445566677789999999999532        22233333334444443 3322        4577888888776665


Q ss_pred             hhc
Q psy16204        480 CLE  482 (577)
Q Consensus       480 llr  482 (577)
                      +-|
T Consensus       195 ~dr  197 (229)
T d3d31a2         195 ADR  197 (229)
T ss_dssp             CSE
T ss_pred             CCE
Confidence            433

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.89  E-value=0.013  Score=56.57  Aligned_cols=36  Identities=22%  Similarity=0.202  Sum_probs=29.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      +-+.++||+|||||+||-.++..+   |..+++++...-
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~   96 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA   96 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCcc
Confidence            347899999999999999888766   567888888643

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.061  Score=50.30  Aligned_cols=20  Identities=25%  Similarity=0.250  Sum_probs=18.6

Q ss_pred             eEEecCCCCChHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~  269 (577)
                      +-|.||.|+|||+|.++|+.
T Consensus        28 ~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHhC
Confidence            67999999999999999986

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.73  E-value=0.0088  Score=57.23  Aligned_cols=34  Identities=12%  Similarity=0.198  Sum_probs=24.3

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCC--eEEEEecCcc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGT--TFFNVSSSTL  283 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~--~fv~v~~s~l  283 (577)
                      +.|.||.|+|||+|.+.|+.-+.-  =-+.+++.++
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i   62 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI   62 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred             EEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC
Confidence            347899999999999999977642  1244444444

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.72  E-value=0.041  Score=51.97  Aligned_cols=34  Identities=18%  Similarity=0.128  Sum_probs=24.8

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCC--eEEEEecCcc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGT--TFFNVSSSTL  283 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~--~fv~v~~s~l  283 (577)
                      +-|.||.|+|||+|.++|+.....  =-+.+++.++
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i   70 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI   70 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCCCCccEEEeccccc
Confidence            679999999999999999976542  1244444444

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.66  E-value=0.003  Score=56.25  Aligned_cols=35  Identities=17%  Similarity=0.223  Sum_probs=27.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---------CCeEEEEecCc
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---------GTTFFNVSSST  282 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---------~~~fv~v~~s~  282 (577)
                      +-++|+||||||||++|-.+|..+         +.++++++...
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~   78 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG   78 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSS
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecc
Confidence            358999999999999999888654         34566776654

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.049  Score=50.08  Aligned_cols=44  Identities=14%  Similarity=0.089  Sum_probs=27.0

Q ss_pred             CcccccCcHHHHHHHHHHHHCcCCCcccc-----------ceeEEecCCCCChHHHHH
Q psy16204        219 QWNKVAGLTEAKAILQEAMVLPTIMPEFF-----------KEALERHSHGTGKTMLAK  265 (577)
Q Consensus       219 ~~~dIiG~~~ak~~L~e~l~~pl~~~~~~-----------k~ILL~GPpGtGKT~LAk  265 (577)
                      +|+++.-.....+.|.+.   .+..+...           +.+++..|+|+|||...-
T Consensus        13 sF~~l~L~~~l~~~L~~~---g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayl   67 (218)
T d2g9na1          13 SFDDMNLSESLLRGIYAY---GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA   67 (218)
T ss_dssp             CGGGSCCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHH
T ss_pred             CHHHCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhh
Confidence            566665555555555432   12222111           579999999999997543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0037  Score=53.35  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=21.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .-++|+||||+|||++|-.+|..+.
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3479999999999999999997754

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.02  Score=54.56  Aligned_cols=35  Identities=17%  Similarity=0.173  Sum_probs=25.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCe--EEEEecCcc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTT--FFNVSSSTL  283 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~--fv~v~~s~l  283 (577)
                      -+.+.||.|+|||+|++.|+.-....  -+.++..++
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i   78 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPL   78 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred             EEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEec
Confidence            47899999999999999998765422  244555544

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.43  E-value=0.0067  Score=54.68  Aligned_cols=34  Identities=21%  Similarity=0.204  Sum_probs=26.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC---------CeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG---------TTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~---------~~fv~v~~s~  282 (577)
                      -++++||||+|||++|-.+|..+.         ..++++.+..
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~   80 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   80 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccc
Confidence            489999999999999999987753         4566666543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.39  E-value=0.025  Score=54.74  Aligned_cols=23  Identities=30%  Similarity=0.241  Sum_probs=20.7

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +.|.||.|+|||+|++.|+..+.
T Consensus        65 vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          65 LAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCChHHHHHHHHhCCCc
Confidence            68999999999999999997664

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.21  E-value=0.0047  Score=54.50  Aligned_cols=25  Identities=8%  Similarity=0.183  Sum_probs=22.1

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +-|+|.||+|+|||+|++.|.++..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3478999999999999999998874

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.20  E-value=0.09  Score=46.67  Aligned_cols=33  Identities=30%  Similarity=0.377  Sum_probs=21.7

Q ss_pred             ceeEEecCCCCChHHHHHH-HHHHh--CCeEEEEec
Q psy16204        248 KEALERHSHGTGKTMLAKA-VATEC--GTTFFNVSS  280 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAka-LA~el--~~~fv~v~~  280 (577)
                      +.+++.+|+|+|||++|-. +...+  +..++.+-.
T Consensus        41 ~~~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l~P   76 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP   76 (202)
T ss_dssp             SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCEEEEcCCCCchhHHHHHHHHHHhhccCcceeecc
Confidence            4789999999999998743 33332  334454443

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0056  Score=55.03  Aligned_cols=24  Identities=13%  Similarity=0.145  Sum_probs=21.9

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      |-+.|++|+|||++|+.|++.++.
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhch
Confidence            568999999999999999999874

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.06  E-value=0.037  Score=52.71  Aligned_cols=24  Identities=17%  Similarity=0.201  Sum_probs=21.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+-|.||+|+|||+|++.|+.-..
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEECCCCChHHHHHHHHhcccC
Confidence            478999999999999999987654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.04  E-value=0.028  Score=53.81  Aligned_cols=35  Identities=14%  Similarity=0.124  Sum_probs=26.0

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCe--EEEEecCcc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTT--FFNVSSSTL  283 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~--fv~v~~s~l  283 (577)
                      -+.+.||+|+|||+|++.|+.-....  -+.++..++
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i   82 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI   82 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG
T ss_pred             EEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEc
Confidence            47899999999999999998765432  355555444

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.90  E-value=0.085  Score=50.33  Aligned_cols=22  Identities=18%  Similarity=0.156  Sum_probs=19.6

Q ss_pred             eEEecCCCCChHHHHHHHHHHh
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      +-|.||.|+|||+|+++|+.-.
T Consensus        31 ~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          31 ISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHcCc
Confidence            6799999999999999998644

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.84  E-value=0.088  Score=49.88  Aligned_cols=34  Identities=15%  Similarity=0.187  Sum_probs=25.4

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCe--EEEEecCcc
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTT--FFNVSSSTL  283 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~--fv~v~~s~l  283 (577)
                      +-|.||.|+|||+|+++|+......  -+.++..++
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i   68 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI   68 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             EEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEec
Confidence            6799999999999999999775422  244555544

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.0074  Score=54.11  Aligned_cols=24  Identities=21%  Similarity=0.169  Sum_probs=21.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      .-++|+|+||+|||++|..+|..+
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            348999999999999999999764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.72  E-value=0.0084  Score=49.98  Aligned_cols=22  Identities=18%  Similarity=0.119  Sum_probs=19.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -|+|.|+||||||+|...+...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999998754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.69  E-value=0.009  Score=51.68  Aligned_cols=31  Identities=16%  Similarity=-0.076  Sum_probs=24.0

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC---CeEEEEe
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG---TTFFNVS  279 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~---~~fv~v~  279 (577)
                      -+-+.|++|+|||+|+..|+.++.   ..+-.+.
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik   36 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   36 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            456999999999999999998763   4444443

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.61  E-value=0.011  Score=52.06  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=22.7

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      |-++|++|+|||++|+.| ++.|++++.
T Consensus         6 IgitG~~gSGKstva~~l-~~~g~~~~~   32 (191)
T d1uf9a_           6 IGITGNIGSGKSTVAALL-RSWGYPVLD   32 (191)
T ss_dssp             EEEEECTTSCHHHHHHHH-HHTTCCEEE
T ss_pred             EEEECCCCCCHHHHHHHH-HHCCCeEEE
Confidence            558999999999999999 568877653

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.61  E-value=0.17  Score=45.33  Aligned_cols=20  Identities=40%  Similarity=0.619  Sum_probs=15.7

Q ss_pred             ceeEEecCCCCChHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA  268 (577)
                      +.+++.+|+|+|||. |-.+.
T Consensus        39 ~dvi~~a~tGsGKTl-ay~lp   58 (206)
T d1s2ma1          39 RDILARAKNGTGKTA-AFVIP   58 (206)
T ss_dssp             CCEEEECCTTSCHHH-HHHHH
T ss_pred             CCEEEecCCcchhhh-hhccc
Confidence            579999999999994 44443

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.54  E-value=0.14  Score=47.78  Aligned_cols=23  Identities=13%  Similarity=0.088  Sum_probs=20.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      +.++++||..+|||++.|.+|-.
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHHH
Confidence            46899999999999999998854

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.12  E-value=0.76  Score=43.75  Aligned_cols=54  Identities=17%  Similarity=0.200  Sum_probs=36.5

Q ss_pred             CcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHH---hCCeEEEEecCcc
Q psy16204        225 GLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATE---CGTTFFNVSSSTL  283 (577)
Q Consensus       225 G~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~e---l~~~fv~v~~s~l  283 (577)
                      .|..+.+.+.+-+..+     .+...||.|..|+|||.+|-..+..   .|.....+-....
T Consensus        87 ~Q~~ai~ei~~d~~~~-----~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~  143 (264)
T d1gm5a3          87 AQKRAHQEIRNDMISE-----KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSI  143 (264)
T ss_dssp             HHHHHHHHHHHHHHSS-----SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHH
T ss_pred             hHHHHHHHHHHHhhcc-----CcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehHh
Confidence            3666667666666443     2246799999999999998866544   3666666655443

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.02  E-value=0.014  Score=48.17  Aligned_cols=21  Identities=24%  Similarity=0.218  Sum_probs=19.1

Q ss_pred             eEEecCCCCChHHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      |+|.|+||||||+|...+...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998763

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.00  E-value=0.014  Score=51.51  Aligned_cols=24  Identities=17%  Similarity=0.123  Sum_probs=21.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -++|+|+||+|||++|-.+|..+-
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            479999999999999999997763

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.81  E-value=0.016  Score=51.53  Aligned_cols=23  Identities=26%  Similarity=0.212  Sum_probs=20.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      ++|+|.|+||+|||+|..++...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            57999999999999999998763

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.80  E-value=0.018  Score=51.83  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=23.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      -|+|.|+=|+|||+++|.+++.+|..
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             EEEEecCCCccHHHHHHHHHhhcccc
Confidence            37899999999999999999999864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.76  E-value=0.017  Score=51.55  Aligned_cols=26  Identities=19%  Similarity=0.314  Sum_probs=22.5

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      +-|+|.||+|+|||+|++.|.++..-
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~   29 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPD   29 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCc
Confidence            45889999999999999999987543

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.75  E-value=0.18  Score=46.86  Aligned_cols=22  Identities=18%  Similarity=0.125  Sum_probs=19.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .++|+||...|||++.|.++-.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHHH
Confidence            4799999999999999988844

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.66  E-value=0.018  Score=48.10  Aligned_cols=21  Identities=24%  Similarity=0.240  Sum_probs=18.9

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|+|.|.||||||+|.+++..
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            379999999999999999865

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=93.46  E-value=0.021  Score=51.07  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=20.6

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      |++.|++|+|||+|.++|.+.++
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Confidence            68999999999999999987764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.38  E-value=0.016  Score=49.17  Aligned_cols=21  Identities=19%  Similarity=0.134  Sum_probs=18.7

Q ss_pred             ceeEEecCCCCChHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA  268 (577)
                      .-|+|.|++|||||+|..++.
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            358999999999999999874

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=93.33  E-value=0.5  Score=44.31  Aligned_cols=58  Identities=21%  Similarity=0.141  Sum_probs=41.2

Q ss_pred             ccccCcHHHHHHHHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        221 NKVAGLTEAKAILQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       221 ~dIiG~~~ak~~L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      .--..|..+.+.+.+.+..+.     +...||+|.+|+|||.++-..+..+   |...+.+-....
T Consensus        55 ~lt~~Q~~~~~~i~~~~~~~~-----~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~  115 (233)
T d2eyqa3          55 ETTPDQAQAINAVLSDMCQPL-----AMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL  115 (233)
T ss_dssp             CCCHHHHHHHHHHHHHHHSSS-----CCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             ccchhHHHHHHHHHHHHhccC-----ccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHH
Confidence            333457777777877776542     3578999999999999988666554   677776666543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.33  E-value=0.025  Score=51.58  Aligned_cols=29  Identities=21%  Similarity=0.268  Sum_probs=24.6

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      ++|||.|++|+|||++|-++... |..|+.
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~-g~~lv~   43 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR-GHRLIA   43 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT-TCEEEE
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc-CCeEEe
Confidence            68999999999999999988875 766554

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.33  E-value=0.024  Score=51.94  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=21.1

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      ++|.||+|+|||+|.+.|.+...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhhCC
Confidence            78999999999999999999865

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.20  E-value=0.015  Score=51.17  Aligned_cols=29  Identities=17%  Similarity=0.121  Sum_probs=24.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      -|.|-|+.|+|||++++.|++.++...+.
T Consensus        11 ~I~ieG~~GsGKTTl~~~L~~~l~~~~~~   39 (197)
T d2vp4a1          11 TVLIEGNIGSGKTTYLNHFEKYKNDICLL   39 (197)
T ss_dssp             EEEEECSTTSCHHHHHHTTGGGTTTEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence            47789999999999999999998765443

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.14  E-value=0.021  Score=53.63  Aligned_cols=28  Identities=11%  Similarity=-0.006  Sum_probs=25.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      +.++|+|||+||||++|.+|++-++...
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~l~G~v   81 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHFIQGAV   81 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred             eEEEEECCCCccHHHHHHHHHHHhCCEE
Confidence            6799999999999999999999997654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.026  Score=48.94  Aligned_cols=21  Identities=19%  Similarity=0.219  Sum_probs=18.7

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -|++.|++|||||+|+..+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            378999999999999998875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=92.95  E-value=0.023  Score=48.40  Aligned_cols=21  Identities=24%  Similarity=0.188  Sum_probs=18.7

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|+|.|++|||||+|.+.+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            489999999999999999854

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.73  E-value=0.049  Score=47.92  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=26.0

Q ss_pred             eEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      |.|.|+.|+|||++++.|++.+   |.+++.+...
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P   37 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP   37 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            5678999999999999999876   5677666544

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.093  Score=48.50  Aligned_cols=16  Identities=31%  Similarity=0.605  Sum_probs=14.0

Q ss_pred             ceeEEecCCCCChHHH
Q psy16204        248 KEALERHSHGTGKTML  263 (577)
Q Consensus       248 k~ILL~GPpGtGKT~L  263 (577)
                      +.++...|+|+|||..
T Consensus        55 ~dvi~~a~TGSGKTla   70 (222)
T d2j0sa1          55 RDVIAQSQSGTGKTAT   70 (222)
T ss_dssp             CCEEEECCTTSSHHHH
T ss_pred             CCeEEEcCcchhhhhh
Confidence            5799999999999963

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.64  E-value=0.03  Score=47.93  Aligned_cols=21  Identities=10%  Similarity=0.150  Sum_probs=18.8

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -|+|.|++|||||+|+..+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.03  Score=47.95  Aligned_cols=22  Identities=27%  Similarity=0.308  Sum_probs=19.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -|+|.|.+|||||+|+.++...
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.58  E-value=0.028  Score=47.89  Aligned_cols=21  Identities=14%  Similarity=0.143  Sum_probs=19.1

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|+|.|.||||||+|..++..
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999865

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=92.56  E-value=0.048  Score=53.54  Aligned_cols=39  Identities=10%  Similarity=-0.005  Sum_probs=31.2

Q ss_pred             cccceeEEecCCCCChHHHHHHHHHHhC-----CeEEEEecCcc
Q psy16204        245 EFFKEALERHSHGTGKTMLAKAVATECG-----TTFFNVSSSTL  283 (577)
Q Consensus       245 ~~~k~ILL~GPpGtGKT~LAkaLA~el~-----~~fv~v~~s~l  283 (577)
                      +.+--|-+.|++|+|||++|+.|+..+.     ..+..++..++
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F  121 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence            3344578999999999999999999984     45667777766

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.029  Score=51.17  Aligned_cols=30  Identities=10%  Similarity=0.086  Sum_probs=24.2

Q ss_pred             eEEecCCCCChHHHHHHHHHHh---CCeEEEEe
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC---GTTFFNVS  279 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~  279 (577)
                      |.|.|+.|+|||++++.|++.+   |.+++.+.
T Consensus         6 I~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~   38 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR   38 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            4566999999999999999976   56666654

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=92.48  E-value=0.045  Score=49.39  Aligned_cols=27  Identities=26%  Similarity=0.401  Sum_probs=22.8

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      |-++|++|+|||++|+.+. ++|++++.
T Consensus         6 IgitG~igSGKStv~~~l~-~~G~~vid   32 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFA-DLGINVID   32 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHH-HTTCEEEE
T ss_pred             EEEECCCcCCHHHHHHHHH-HCCCcEEE
Confidence            5589999999999999886 78877654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=92.44  E-value=0.027  Score=50.79  Aligned_cols=27  Identities=22%  Similarity=0.335  Sum_probs=23.0

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      |-++|+.|||||++|+.+. +.|++++.
T Consensus         5 IgITG~igSGKStv~~~l~-~~G~~vid   31 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFT-DLGVPLVD   31 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHH-TTTCCEEE
T ss_pred             EEEECCCCCCHHHHHHHHH-HCCCeEEE
Confidence            4589999999999999886 68988764

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=92.40  E-value=0.033  Score=50.85  Aligned_cols=29  Identities=21%  Similarity=0.227  Sum_probs=24.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFFN  277 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv~  277 (577)
                      ++|||.|++|+|||++|-.+... |..++.
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~-G~~lva   44 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK-NHLFVG   44 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT-TCEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc-CCceec
Confidence            58999999999999999988764 665544

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.39  E-value=0.041  Score=49.77  Aligned_cols=27  Identities=22%  Similarity=0.267  Sum_probs=23.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      ++|||.|++|+|||++|-++.+. |..|
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~-g~~l   42 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR-GHRL   42 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc-CCeE
Confidence            58999999999999999888776 5544

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=92.38  E-value=0.034  Score=47.57  Aligned_cols=21  Identities=24%  Similarity=0.211  Sum_probs=18.9

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|+|.|++|||||+|...+..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999999865

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.032  Score=48.68  Aligned_cols=20  Identities=25%  Similarity=0.258  Sum_probs=18.3

Q ss_pred             eEEecCCCCChHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~  269 (577)
                      |+|.|++|||||+|++.+..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998874

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.034  Score=47.65  Aligned_cols=22  Identities=18%  Similarity=0.252  Sum_probs=19.2

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -|+|.|.+|||||+|++++...
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3788999999999999998753

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.23  E-value=0.036  Score=47.74  Aligned_cols=22  Identities=23%  Similarity=0.166  Sum_probs=19.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -|++.|++|||||+|...+...
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3899999999999999998754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.036  Score=47.77  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=19.1

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -|+|.|.+|||||+|++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999999885

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.11  E-value=0.038  Score=47.53  Aligned_cols=22  Identities=14%  Similarity=0.104  Sum_probs=19.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -|++.|.+|||||+|+..+...
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4799999999999999998853

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.039  Score=47.61  Aligned_cols=20  Identities=25%  Similarity=0.164  Sum_probs=18.5

Q ss_pred             eEEecCCCCChHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~  269 (577)
                      |++.|++|||||+|.+.+..
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999876

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.05  E-value=0.056  Score=52.60  Aligned_cols=35  Identities=11%  Similarity=0.101  Sum_probs=27.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh------CCeEEEEecCcc
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC------GTTFFNVSSSTL  283 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el------~~~fv~v~~s~l  283 (577)
                      -|-|.|++|||||+|+..|...+      ...+..++..++
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            35589999999999999887765      346677787776

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.02  E-value=0.04  Score=47.76  Aligned_cols=21  Identities=19%  Similarity=0.245  Sum_probs=18.8

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -|++.|++|||||+|+..+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998865

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.038  Score=47.57  Aligned_cols=21  Identities=19%  Similarity=0.216  Sum_probs=19.0

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -|+|.|.+|||||+|.+.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            389999999999999998875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.04  Score=47.30  Aligned_cols=21  Identities=19%  Similarity=0.083  Sum_probs=18.9

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -|+|.|.+|||||+|++.+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998875

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.95  E-value=0.041  Score=48.17  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=20.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|+|.|+||+|||+|..+|..+
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.79  E-value=0.043  Score=47.03  Aligned_cols=21  Identities=19%  Similarity=0.267  Sum_probs=18.9

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -|++.|++|||||+|+.++..
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999999875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.77  E-value=0.044  Score=46.54  Aligned_cols=20  Identities=20%  Similarity=0.193  Sum_probs=18.6

Q ss_pred             eEEecCCCCChHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~  269 (577)
                      |++.|.+|||||+|+..+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.73  E-value=0.045  Score=48.91  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=20.2

Q ss_pred             eEEecCCCCChHHHHHHHHHHh
Q psy16204        250 ALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      |.|-|+.|+|||++++.|++.+
T Consensus         5 IviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6678999999999999999877

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.73  E-value=0.044  Score=46.63  Aligned_cols=20  Identities=20%  Similarity=0.102  Sum_probs=18.4

Q ss_pred             eEEecCCCCChHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~  269 (577)
                      |++.|.+|||||+|++++..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.73  E-value=0.044  Score=47.23  Aligned_cols=20  Identities=30%  Similarity=0.301  Sum_probs=18.4

Q ss_pred             eEEecCCCCChHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~  269 (577)
                      |+|.|.+|||||+|+..+..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998864

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=91.71  E-value=0.042  Score=47.17  Aligned_cols=21  Identities=19%  Similarity=0.189  Sum_probs=19.0

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|.|.|+||+|||+|.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999974

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.65  E-value=0.044  Score=46.98  Aligned_cols=20  Identities=20%  Similarity=0.174  Sum_probs=18.0

Q ss_pred             eEEecCCCCChHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~  269 (577)
                      |++.|.+|||||+|...+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999998864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.59  E-value=0.045  Score=47.39  Aligned_cols=21  Identities=19%  Similarity=0.229  Sum_probs=19.0

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -|+|.|.+|||||+|++.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.59  E-value=0.047  Score=46.82  Aligned_cols=20  Identities=25%  Similarity=0.288  Sum_probs=18.4

Q ss_pred             eEEecCCCCChHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~  269 (577)
                      |++.|++|||||+|+..+..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998865

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.58  E-value=0.047  Score=46.67  Aligned_cols=21  Identities=24%  Similarity=0.275  Sum_probs=18.9

Q ss_pred             eEEecCCCCChHHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      |++.|.+|||||+|++++...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998753

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.53  E-value=0.047  Score=46.67  Aligned_cols=21  Identities=14%  Similarity=0.071  Sum_probs=19.0

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -|+|.|++|||||+|+..+..
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999875

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.53  E-value=0.12  Score=50.37  Aligned_cols=36  Identities=22%  Similarity=0.219  Sum_probs=27.0

Q ss_pred             HHHHHHCcCCCccccceeEEecCCCCChHHHHHHHHHHhC
Q psy16204        233 LQEAMVLPTIMPEFFKEALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       233 L~e~l~~pl~~~~~~k~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      +.+.+ .|+.+.   .-+++.|++|||||+|+..+++.+.
T Consensus        33 ~ID~l-~PigrG---Qr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          33 VLDLA-SPIGRG---QRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             HHHHH-SCCBTT---CEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             eeeec-ccccCC---CeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            34433 566544   4589999999999999999998653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=91.50  E-value=0.063  Score=45.94  Aligned_cols=21  Identities=33%  Similarity=0.264  Sum_probs=18.8

Q ss_pred             ceeEEecCCCCChHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA  268 (577)
                      -.|++.|++|||||+|..++.
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            468999999999999999884

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.48  E-value=0.05  Score=46.64  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=19.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -|++.|.+|||||+|++.+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999998753

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.32  E-value=0.38  Score=46.43  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=20.7

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC  271 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el  271 (577)
                      -+++.|++|||||+|+..++...
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHH
Confidence            48999999999999999998774

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.29  E-value=0.053  Score=46.58  Aligned_cols=21  Identities=24%  Similarity=0.262  Sum_probs=18.9

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -|++.|++|||||+|++.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998865

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.27  E-value=0.053  Score=47.22  Aligned_cols=20  Identities=25%  Similarity=0.298  Sum_probs=18.5

Q ss_pred             eEEecCCCCChHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~  269 (577)
                      |++.|.+|||||+|+..+..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.26  E-value=0.054  Score=46.42  Aligned_cols=21  Identities=14%  Similarity=0.132  Sum_probs=18.9

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -|+|.|.+|||||+|.+.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999999875

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.25  E-value=0.17  Score=45.63  Aligned_cols=23  Identities=22%  Similarity=0.206  Sum_probs=18.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      +.+++..|+|+|||..+-...-+
T Consensus        43 ~d~iv~a~TGsGKT~~~~l~~~~   65 (208)
T d1hv8a1          43 YNIVAQARTGSGKTASFAIPLIE   65 (208)
T ss_dssp             SEEEEECCSSSSHHHHHHHHHHH
T ss_pred             CCeeeechhcccccceeeccccc
Confidence            37899999999999977655544

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.19  E-value=0.053  Score=46.89  Aligned_cols=22  Identities=18%  Similarity=0.134  Sum_probs=19.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -|++.|.+|||||+|+..+...
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.15  E-value=0.053  Score=46.52  Aligned_cols=21  Identities=14%  Similarity=0.137  Sum_probs=19.1

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|+|.|+||+|||+|..+|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999964

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.07  E-value=0.055  Score=49.89  Aligned_cols=21  Identities=29%  Similarity=0.370  Sum_probs=15.7

Q ss_pred             ceeEEecCCCCChHHHH-HHHH
Q psy16204        248 KEALERHSHGTGKTMLA-KAVA  268 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LA-kaLA  268 (577)
                      ..+|+.|+||||||+++ ..++
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~   36 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIA   36 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHHH
Confidence            35789999999999753 3433

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.06  E-value=0.08  Score=47.68  Aligned_cols=29  Identities=10%  Similarity=0.080  Sum_probs=24.9

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeEE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTFF  276 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~fv  276 (577)
                      +=|.|-|+-|||||++++.|++.++...+
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            45789999999999999999999875443

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.00  E-value=0.094  Score=51.31  Aligned_cols=37  Identities=24%  Similarity=0.310  Sum_probs=28.5

Q ss_pred             cccceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        245 EFFKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       245 ~~~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      ...+++++.|++|+|||.+++.+...+   +.+++.++..
T Consensus        48 ~~~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~k   87 (433)
T d1e9ra_          48 AEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN   87 (433)
T ss_dssp             GGGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             cccceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            344789999999999999988666443   6677777664

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.057  Score=46.52  Aligned_cols=20  Identities=30%  Similarity=0.380  Sum_probs=17.8

Q ss_pred             eEEecCCCCChHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~  269 (577)
                      |+|.|.+|||||+|++.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78899999999999998753

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=90.91  E-value=0.057  Score=48.95  Aligned_cols=32  Identities=9%  Similarity=0.063  Sum_probs=25.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhCCeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATECGTTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~s~  282 (577)
                      -|-|+|+.|||||++|+.|++..|+  ..+++++
T Consensus         3 iIgiTG~igSGKsTva~~l~e~~g~--~~i~~aD   34 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSNYSA--VKYQLAG   34 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSCE--EECCTTH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCC--eEEcccH
Confidence            4679999999999999999998775  4555544

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.82  E-value=0.53  Score=42.28  Aligned_cols=16  Identities=38%  Similarity=0.615  Sum_probs=14.2

Q ss_pred             ceeEEecCCCCChHHH
Q psy16204        248 KEALERHSHGTGKTML  263 (577)
Q Consensus       248 k~ILL~GPpGtGKT~L  263 (577)
                      +.+++..|+|+|||+.
T Consensus        41 ~dvl~~a~TGsGKTla   56 (206)
T d1veca_          41 RDILARAKNGTGKSGA   56 (206)
T ss_dssp             CCEEEECCSSSTTHHH
T ss_pred             CCEEeeccCccccccc
Confidence            5799999999999964

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.75  E-value=0.062  Score=50.33  Aligned_cols=22  Identities=27%  Similarity=0.256  Sum_probs=16.4

Q ss_pred             eeEEecCCCCChHHHH-HHHHHH
Q psy16204        249 EALERHSHGTGKTMLA-KAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LA-kaLA~e  270 (577)
                      .+|+.|+||||||+++ ..+|..
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~l   48 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYL   48 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHH
Confidence            5899999999999754 344443

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.74  E-value=0.064  Score=46.23  Aligned_cols=20  Identities=25%  Similarity=0.287  Sum_probs=18.6

Q ss_pred             eEEecCCCCChHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~  269 (577)
                      |+|.|++|||||+|+..+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999998875

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.064  Score=46.45  Aligned_cols=21  Identities=24%  Similarity=0.243  Sum_probs=19.1

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -|++.|.+|||||+|.+++..
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999999875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=90.71  E-value=0.065  Score=46.22  Aligned_cols=21  Identities=24%  Similarity=0.264  Sum_probs=19.1

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -|+|.|.+|||||+|++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999875

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=90.63  E-value=0.062  Score=45.17  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=18.8

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|+|.|+||+|||+|..+|..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999874

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.55  E-value=0.069  Score=45.73  Aligned_cols=22  Identities=9%  Similarity=0.123  Sum_probs=18.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -|+|.|.+|||||+|+..+...
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.49  E-value=0.069  Score=46.48  Aligned_cols=21  Identities=24%  Similarity=0.208  Sum_probs=19.0

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -|++.|.+|||||+|.+++..
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.47  E-value=0.066  Score=46.38  Aligned_cols=21  Identities=29%  Similarity=0.354  Sum_probs=18.5

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -|+|.|.+|||||+|+..+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998863

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.39  E-value=0.069  Score=46.73  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -|+|.|.+|||||+|++.+...
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4799999999999999988763

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=90.38  E-value=0.047  Score=47.09  Aligned_cols=21  Identities=19%  Similarity=0.134  Sum_probs=18.8

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|++.|++|||||+|.+++..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999998864

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=90.12  E-value=0.05  Score=47.15  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=18.4

Q ss_pred             ceeEEecCCCCChHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA  268 (577)
                      --|+|.|++|||||+|.+.+.
T Consensus        18 ~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          18 LRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             EEEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            358999999999999999873

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.04  E-value=0.12  Score=46.86  Aligned_cols=31  Identities=16%  Similarity=0.012  Sum_probs=26.1

Q ss_pred             eEEecCCCCChHHHHHHHHHHhCCeEEEEec
Q psy16204        250 ALERHSHGTGKTMLAKAVATECGTTFFNVSS  280 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~~~fv~v~~  280 (577)
                      |.|-|+-|+|||++++.|++.+......+..
T Consensus         6 I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~   36 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKKLQPNCKLLKF   36 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTTTSEEEEES
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHhCCEEEEE
Confidence            6688999999999999999999776655543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.04  E-value=0.076  Score=46.85  Aligned_cols=20  Identities=25%  Similarity=0.255  Sum_probs=18.4

Q ss_pred             eEEecCCCCChHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~  269 (577)
                      |++.|++|||||+|+..+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999998875

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.85  E-value=0.081  Score=46.33  Aligned_cols=22  Identities=23%  Similarity=0.247  Sum_probs=19.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -|+|.|.+|||||+|...+...
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5899999999999999998753

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.76  E-value=0.087  Score=45.44  Aligned_cols=22  Identities=18%  Similarity=0.215  Sum_probs=19.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -|+|.|.+|||||+|+..+...
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3788999999999999998763

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.70  E-value=0.084  Score=46.33  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=18.9

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -|+|.|.+|||||+|+.++...
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999888753

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.66  E-value=0.051  Score=48.60  Aligned_cols=28  Identities=14%  Similarity=0.149  Sum_probs=24.0

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      +-|.|-|+-|||||++++.|++.+....
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~~~~   30 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCEDWE   30 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCTTEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence            4578999999999999999999986433

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=89.64  E-value=0.094  Score=50.10  Aligned_cols=27  Identities=26%  Similarity=0.139  Sum_probs=24.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCCe
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGTT  274 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~~  274 (577)
                      +.++|+||+++|||+++.+|++.+|.-
T Consensus       105 n~~~l~G~~~tGKS~f~~~i~~~lg~~  131 (267)
T d1u0ja_         105 NTIWLFGPATTGKTNIAEAIAHTVPFY  131 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHhcch
Confidence            578999999999999999999998653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.39  E-value=0.085  Score=44.96  Aligned_cols=20  Identities=15%  Similarity=0.076  Sum_probs=18.5

Q ss_pred             eEEecCCCCChHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~  269 (577)
                      |+|.|.||+|||+|..+|..
T Consensus         8 I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999964

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.38  E-value=0.086  Score=45.66  Aligned_cols=20  Identities=20%  Similarity=0.233  Sum_probs=18.0

Q ss_pred             eeEEecCCCCChHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA  268 (577)
                      -|+|.|.+|||||+|++.+.
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999883

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=89.32  E-value=0.034  Score=46.72  Aligned_cols=23  Identities=22%  Similarity=0.163  Sum_probs=20.9

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      .+|+|+.|+|||+|..||.-.++
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            47899999999999999998875

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=89.30  E-value=0.082  Score=46.25  Aligned_cols=21  Identities=14%  Similarity=0.181  Sum_probs=19.1

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|+|.|+||+|||+|.++|..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            589999999999999999973

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.27  E-value=0.055  Score=46.72  Aligned_cols=20  Identities=25%  Similarity=0.207  Sum_probs=8.4

Q ss_pred             eEEecCCCCChHHHHHHHHH
Q psy16204        250 ALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~  269 (577)
                      |+|.|.+|||||+|+.++..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999988864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.24  E-value=0.095  Score=45.27  Aligned_cols=21  Identities=14%  Similarity=0.031  Sum_probs=19.1

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|+|.|.+|+|||+|.++|..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.79  E-value=0.067  Score=46.21  Aligned_cols=21  Identities=33%  Similarity=0.311  Sum_probs=17.8

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -|++.|++|||||+|..++..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988754

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=88.50  E-value=0.061  Score=45.56  Aligned_cols=21  Identities=14%  Similarity=0.104  Sum_probs=18.7

Q ss_pred             ceeEEecCCCCChHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA  268 (577)
                      ..|.|.|.|++|||+|.++|.
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            358999999999999999884

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=88.46  E-value=0.21  Score=43.25  Aligned_cols=33  Identities=18%  Similarity=0.150  Sum_probs=26.4

Q ss_pred             ceeEEecC-CCCChHHHHHHHHHHh---CCeEEEEec
Q psy16204        248 KEALERHS-HGTGKTMLAKAVATEC---GTTFFNVSS  280 (577)
Q Consensus       248 k~ILL~GP-pGtGKT~LAkaLA~el---~~~fv~v~~  280 (577)
                      |.+++.|- +|||||+++-.||..+   |..+..++.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~   38 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP   38 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence            46788999 5999999998888766   667777764

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.14  E-value=0.27  Score=45.08  Aligned_cols=35  Identities=26%  Similarity=0.209  Sum_probs=29.1

Q ss_pred             cceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        247 FKEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       247 ~k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      ++-+++.|--|||||++|-.+|..+   |..+.-|++.
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4678899999999999999888776   6777777765

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.06  E-value=0.13  Score=50.17  Aligned_cols=35  Identities=11%  Similarity=0.181  Sum_probs=26.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---CCeEEEEecCcc
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---GTTFFNVSSSTL  283 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s~l  283 (577)
                      -|-+.|++|+|||+++++|++.+   +.....+++.++
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf   43 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   43 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence            46799999999999999998876   467677777766

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.03  E-value=0.13  Score=44.06  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=19.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -|+|.|..|||||+|.+.+...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999755

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=87.99  E-value=0.1  Score=49.23  Aligned_cols=24  Identities=13%  Similarity=0.022  Sum_probs=20.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+.+.||.|+|||+|++.|+.-..
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhC
Confidence            378999999999999999987653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=87.88  E-value=0.22  Score=48.79  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=25.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh---C--CeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC---G--TTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el---~--~~fv~v~~s~  282 (577)
                      -|-+.||||+|||+|..+++..+   |  +.++.++.+.
T Consensus        56 ~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss   94 (327)
T d2p67a1          56 RLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS   94 (327)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCce
Confidence            47899999999999999998765   2  3455565543

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=87.51  E-value=0.39  Score=44.29  Aligned_cols=15  Identities=27%  Similarity=0.534  Sum_probs=14.0

Q ss_pred             ceeEEecCCCCChHH
Q psy16204        248 KEALERHSHGTGKTM  262 (577)
Q Consensus       248 k~ILL~GPpGtGKT~  262 (577)
                      +.+++..|+|+|||.
T Consensus        59 ~dvvi~a~TGsGKTl   73 (238)
T d1wrba1          59 RDIMACAQTGSGKTA   73 (238)
T ss_dssp             CCEEEECCTTSSHHH
T ss_pred             CCEEEECCCCCCcce
Confidence            579999999999998

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.48  E-value=0.052  Score=45.60  Aligned_cols=22  Identities=18%  Similarity=0.202  Sum_probs=19.6

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|.|.|.||+|||+|..+|..+
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999765

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.33  E-value=0.26  Score=48.15  Aligned_cols=34  Identities=18%  Similarity=0.165  Sum_probs=26.3

Q ss_pred             eeEEecCCCCChHHHHHHHHHHh-----CCeEEEEecCc
Q psy16204        249 EALERHSHGTGKTMLAKAVATEC-----GTTFFNVSSST  282 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el-----~~~fv~v~~s~  282 (577)
                      -|=+.||||+|||+|.-+++..+     ...++.++.+.
T Consensus        53 ~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss   91 (323)
T d2qm8a1          53 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS   91 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             EEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeeccccc
Confidence            46799999999999999999764     24556666554

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.27  E-value=0.21  Score=46.85  Aligned_cols=26  Identities=23%  Similarity=0.190  Sum_probs=21.4

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHhCC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATECGT  273 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el~~  273 (577)
                      +..+|.|++|||||+|..+|......
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~  121 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKL  121 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhh
Confidence            45789999999999999999765443

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.13  E-value=0.11  Score=44.94  Aligned_cols=21  Identities=19%  Similarity=0.112  Sum_probs=18.5

Q ss_pred             eeEEecCCCCChHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      .|.|.|.||+|||+|..+|..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999853

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.02  E-value=0.12  Score=44.72  Aligned_cols=20  Identities=20%  Similarity=0.117  Sum_probs=17.9

Q ss_pred             eeEEecCCCCChHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVA  268 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA  268 (577)
                      .|-|.|+||+|||+|..+|.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSE
T ss_pred             eEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999884

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=86.73  E-value=0.17  Score=43.50  Aligned_cols=22  Identities=18%  Similarity=0.188  Sum_probs=19.1

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|.|.|.+|+|||+|..+|...
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3789999999999999998743

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.73  E-value=0.19  Score=43.79  Aligned_cols=34  Identities=24%  Similarity=0.345  Sum_probs=23.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH----hCCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE----CGTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e----l~~~fv~v~~s  281 (577)
                      +++|+++|+|+|||.++-.++..    .+...+.+-..
T Consensus        24 ~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~   61 (200)
T d1wp9a1          24 TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT   61 (200)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcCc
Confidence            36889999999999876655542    34556666553

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.47  E-value=0.16  Score=46.04  Aligned_cols=22  Identities=18%  Similarity=0.175  Sum_probs=19.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -|||.|..|+|||+|++.+...
T Consensus         8 KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999988644

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=85.40  E-value=0.72  Score=44.25  Aligned_cols=24  Identities=25%  Similarity=0.162  Sum_probs=19.4

Q ss_pred             eeEEecCCCCChHHHHHHHHHHhC
Q psy16204        249 EALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+++.|++|+|||.|+..++....
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~~   92 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQQ   92 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTCC
T ss_pred             eEeeccCCCCChHHHHHHHHhhhc
Confidence            478999999999999987655443

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.22  E-value=0.23  Score=43.39  Aligned_cols=22  Identities=18%  Similarity=0.051  Sum_probs=19.5

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .|++.|.+|||||+|...+...
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999988654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.03  E-value=0.22  Score=42.42  Aligned_cols=22  Identities=18%  Similarity=0.191  Sum_probs=18.8

Q ss_pred             eeEEecCCCCChHHHHHHHHHH
Q psy16204        249 EALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       249 ~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      -|+|.|..|||||+|.+.+-..
T Consensus         4 KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4799999999999999987543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.68  E-value=0.25  Score=47.14  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=21.2

Q ss_pred             EEecCCCCChHHHHHHHHHHhCCeE
Q psy16204        251 LERHSHGTGKTMLAKAVATECGTTF  275 (577)
Q Consensus       251 LL~GPpGtGKT~LAkaLA~el~~~f  275 (577)
                      +|+||.|+|||++..||+-.+|...
T Consensus        29 ~i~G~NGsGKS~ileAi~~~lg~~~   53 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAISFVLGVRS   53 (427)
T ss_dssp             EEECSTTSSHHHHHHHHHHHTTC--
T ss_pred             EEECCCCCCHHHHHHHHHHHhCCCc
Confidence            7999999999999999998877543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=84.56  E-value=0.19  Score=47.46  Aligned_cols=58  Identities=9%  Similarity=-0.028  Sum_probs=42.8

Q ss_pred             cccCCCCCccchhhHHHHHHHHHhhcccccCCcccccccCCCCccccccccCCCCCCcc
Q psy16204        318 GVLNGEPTTTFAYNKQILQMNRRVLKGALTTAPTRAENQESGPSIFSVMVDGLGKGPWS  376 (577)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (577)
                      ..++..|.+++|....+.++++.+. --.+.......|..+|.+++.|+++|+||+..+
T Consensus         5 ~~~~~t~~Di~Gl~~~k~~l~e~v~-~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la   62 (256)
T d1lv7a_           5 DQIKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA   62 (256)
T ss_dssp             CSSCCCGGGSCSCHHHHHHTHHHHH-HHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred             CCCCCCHHHHhchHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHH
Confidence            4566789999999999999988653 244555666778889999999999999999883

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.04  E-value=1.3  Score=42.46  Aligned_cols=23  Identities=26%  Similarity=0.222  Sum_probs=19.2

Q ss_pred             ceeEEecCCCCChHHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVATE  270 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~e  270 (577)
                      .-+++.|++|+|||+|+..++..
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHHh
Confidence            34799999999999998877754

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.99  E-value=0.58  Score=42.69  Aligned_cols=34  Identities=26%  Similarity=0.260  Sum_probs=26.8

Q ss_pred             ceeEEecCCCCChHHHHHHHHHHh---CCeEEEEecC
Q psy16204        248 KEALERHSHGTGKTMLAKAVATEC---GTTFFNVSSS  281 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~el---~~~fv~v~~s  281 (577)
                      +-|+++|-=|||||+++-.||..+   |..++.|++.
T Consensus        21 ~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            457888999999999877776554   6778888776

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.98  E-value=0.22  Score=46.02  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=19.7

Q ss_pred             eEEecCCCCChHHHHHHHHHHhC
Q psy16204        250 ALERHSHGTGKTMLAKAVATECG  272 (577)
Q Consensus       250 ILL~GPpGtGKT~LAkaLA~el~  272 (577)
                      -+|+||.|+|||++..||+-.++
T Consensus        27 nvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHHHTSC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhC
Confidence            47999999999999999976543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=82.16  E-value=0.45  Score=44.31  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=19.7

Q ss_pred             ceeEEecCCCCChHHHHHHHHH
Q psy16204        248 KEALERHSHGTGKTMLAKAVAT  269 (577)
Q Consensus       248 k~ILL~GPpGtGKT~LAkaLA~  269 (577)
                      -.|+|.|.||+|||+|..+|..
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCcHHHHHHHHhC
Confidence            3699999999999999999874