Psyllid ID: psy16241

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENETTP
Secondary Structure (PSIPRED)
cEEEEEEcccHHHHHHHHHcccccccccccEEEEccccccHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHcccccEEEEEccEEEEEEEccccEEEEEccccccccccEEEEEEcccccccEEEEccEEEccccEEEcccEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccHHHHHHccccccHHHHcccccEEEcccccccHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHcccccEEEEEcccEEEEEcccccEEEEEEccccccccccEEEEcccccEEEEEEEcEccccccEEEEcccEcEEEEcEcccccc
Coil and Loop (DISEMBL)
kirctvdqgTDRWLLFLNQhnldpalywpdlvtgdfdsvssnsMGRFLalgsdivptpdqsyTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSLPIYLLSAKYMSWVLRANAglhrihlnpgftsgkktlglipvgspvqqVYSTGLKWNLNNHTLafggmvsssntyenettp
Flexible Loop (DISEMBL)
kirctvdqgtDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGsdivptpdqsYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAfggmvsssntyenettp
Low Complexity Region (SEG)
KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENETTP
Disordered region (IsUnstruct)
***CTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGM*************
Disordered Region (DISOPRED)
KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENE***
Disordered Region (DISEMBL)
KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSS*********
Disordered Region (DISPRO)
KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENETTP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
Q9H3S4	243	Thiamin pyrophosphokinase	yes	N/A	0.811	0.621	0.365	1e-26
Q9R0M5	243	Thiamin pyrophosphokinase	yes	N/A	0.811	0.621	0.371	1e-26
Q5E9T4	243	Thiamin pyrophosphokinase	yes	N/A	0.817	0.625	0.357	1e-25
P41888	569	Thiamine pyrophosphokinas	yes	N/A	0.919	0.300	0.317	4e-17
P30636	243	Thiamin pyrophosphokinase	yes	N/A	0.768	0.588	0.301	1e-13

>sp|Q9H3S4|TPK1_HUMAN Thiamin pyrophosphokinase 1 OS=Homo sapiens GN=TPK1 PE=1 SV=1

 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 98/164 (59%), Gaps = 13/164 (7%)

Query: 27  YWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKR-----EKIDYL 81
           + P+ + GDFDS+       +   G +++ TPDQ +TDF K +  + K+      K+D +
Sbjct: 63  FLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVDVI 122

Query: 82  ISIVEFNGRLDHCMSNINTLYKSS----LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTS 137
           +++    GR D  M+++NTL++++     PI ++  + + ++L+   G HR+H++ G   
Sbjct: 123 VTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLLQP--GKHRLHVDTGMEG 180

Query: 138 GKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYE 181
                GLIPVG P  QV +TGLKWNL N  LAFG +VS+SNTY+
Sbjct: 181 --DWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYD 222

Catalyzes the phosphorylation of thiamine to thiamine pyrophosphate. Can also catalyze the phosphorylation of pyrithiamine to pyrithiamine pyrophosphate.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 6EC: .EC: 2

>sp|Q9R0M5|TPK1_MOUSE Thiamin pyrophosphokinase 1 OS=Mus musculus GN=Tpk1 PE=1 SV=1

 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 100/164 (60%), Gaps = 13/164 (7%)

Query: 27  YWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVM----EITKRE-KIDYL 81
           + P+ V+GDFDS+       +   G D++ TPDQ +TDF K +     +I ++E ++D +
Sbjct: 63  FLPEFVSGDFDSIRPEVKEYYTKKGCDLISTPDQDHTDFTKCLQVLQRKIEEKELQVDVI 122

Query: 82  ISIVEFNGRLDHCMSNINTLYKSS----LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTS 137
           +++    GR D  M+++NTL++++    +PI ++    + ++L+   G HR+H++ G   
Sbjct: 123 VTLGGLGGRFDQIMASVNTLFQATHITPVPIIIIQKDSLIYLLQP--GKHRLHVDTGMEG 180

Query: 138 GKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYE 181
                GLIPVG P  QV +TGLKWNL N  L FG +VS+SNTY+
Sbjct: 181 --SWCGLIPVGQPCNQVTTTGLKWNLTNDVLGFGTLVSTSNTYD 222

Catalyzes the phosphorylation of thiamine to thiamine pyrophosphate. Can also catalyze the phosphorylation of pyrithiamine to pyrithiamine pyrophosphate.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 6

EC: .

EC: 2

>sp|Q5E9T4|TPK1_BOVIN Thiamin pyrophosphokinase 1 OS=Bos taurus GN=TPK1 PE=2 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 100/165 (60%), Gaps = 13/165 (7%)

Query: 27  YWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKR--EK---IDYL 81
           + P+ ++GDFDS+       +   G +I+ TPDQ +TDF K +  + K+  EK   +D +
Sbjct: 63  FLPEFISGDFDSIRPEVREHYAIKGCEIISTPDQDHTDFTKCLEVLQKKIEEKDLQVDMI 122

Query: 82  ISIVEFNGRLDHCMSNINTLYKS----SLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTS 137
           +++    GR D  M++++TL+++    SLP+ ++  + + ++L+   G H++H++ G   
Sbjct: 123 VTLGGLAGRFDQIMASVSTLFQAPQITSLPVIIIQEESLIYLLQP--GKHKLHVDTGMEG 180

Query: 138 GKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYEN 182
                GLIPVG P  QV +TGLKWNL +  L FG +VS+SNTY+ 
Sbjct: 181 --DWCGLIPVGQPCNQVTTTGLKWNLTHQMLGFGTLVSTSNTYDG 223

Catalyzes the phosphorylation of thiamine to thiamine pyrophosphate. Can also catalyze the phosphorylation of pyrithiamine to pyrithiamine pyrophosphate.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 6

EC: .

EC: 2

>sp|P41888|TNR3_SCHPO Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tnr3 PE=4 SV=1

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 18/189 (9%)

Query: 2   IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQS 61
           IR   D G ++        N D +L  PD V GDFDS++  +   +  +G +IV  P Q+
Sbjct: 378 IRVCADGGANQL------RNYDSSLK-PDYVVGDFDSLTDETKAYYKEMGVNIVFDPCQN 430

Query: 62  YTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSL-----PIYLLSAKYM 116
            TDF K   +I K   ID +  +    GR+DH + N+N L+ ++       ++LL+   +
Sbjct: 431 TTDFMKC-HKIIKEHGIDTIFVLCGMGGRVDHAIGNLNHLFWAASISEKNEVFLLTELNV 489

Query: 117 SWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSS 176
           S +L+        H N G   G     L+PVG  V    ++GL+WN+ +    FGG+VSS
Sbjct: 490 STLLQPGINHVDCHDNIGLHCG-----LLPVGQSVYVKKTSGLEWNIEDRICQFGGLVSS 544

Query: 177 SNTYENETT 185
            N     T 
Sbjct: 545 CNVVTKATV 553

Involved in the regulation of thiamine metabolism, phosphate metabolism, mating and cell growth.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 6

EC: .

EC: 2

>sp|P30636|TPK1_CAEEL Thiamin pyrophosphokinase 1 OS=Caenorhabditis elegans GN=tpk-1 PE=1 SV=3

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 16/159 (10%)

Query: 28  WPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKRE-----KIDYLI 82
           WP ++ GDFDS++     +     + +V  PDQ YTD  K+V    +++     + + ++
Sbjct: 62  WPHIICGDFDSINKQIDTK----NAKVVHLPDQDYTDLSKSVQWCLEQKTLTSWEFENIV 117

Query: 83  SIVEFNGRLDHCMSNINTLYK---SSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGK 139
            +   NGR DH MS +++L +   S  P+ +L ++ +  VL    G   + +N   T+  
Sbjct: 118 VLGGLNGRFDHTMSTLSSLIRFVDSQTPVIVLDSRNL--VLAVPTGDSNLDVNLEMTT-- 173

Query: 140 KTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSN 178
           K  G+IP+      V S GLK+ + N  L FG ++S+SN
Sbjct: 174 KMCGIIPIVQKETIVSSIGLKYEMENLALEFGKLISTSN 212

Catalyzes the phosphorylation of thiamine to thiamine pyrophosphate. Functions cell non-autonomously.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 6

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
322779485	255	hypothetical protein SINV_11082 [Solenop	0.967	0.705	0.395	2e-34
307175769	313	Thiamin pyrophosphokinase 1 [Camponotus	0.983	0.584	0.41	3e-34
340715759	277	PREDICTED: thiamin pyrophosphokinase 1-l	0.967	0.649	0.416	2e-33
307210579	276	Thiamin pyrophosphokinase 1 [Harpegnatho	0.967	0.652	0.395	5e-33
380018046	477	PREDICTED: uncharacterized protein LOC10	0.967	0.377	0.406	7e-33
350396907	276	PREDICTED: thiamin pyrophosphokinase 1-l	0.967	0.652	0.411	9e-33
332031330	276	Thiamin pyrophosphokinase 1 [Acromyrmex	0.956	0.644	0.394	3e-32
225710472	248	Thiamin pyrophosphokinase 1 [Caligus rog	0.940	0.705	0.426	6e-32
225709148	248	Thiamin pyrophosphokinase 1 [Caligus rog	0.940	0.705	0.421	9e-32
328700896	263	PREDICTED: thiamin pyrophosphokinase 1-l	0.962	0.680	0.408	4e-31

>gi|322779485|gb|EFZ09677.1| hypothetical protein SINV_11082 [Solenopsis invicta]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 121/197 (61%), Gaps = 17/197 (8%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDP-----ALYWPDLVTGDFDSVSSNSMGRFLALGSDIV 55
           +I  TVD GT RWL +L +H +D        Y P+L+TGD DS +   + +  ++GS I+
Sbjct: 39  RITVTVDGGTQRWLNYLEEHGIDALNGEYKQYVPNLITGDMDSCTPFVIEKLGSIGSTII 98

Query: 56  PTPDQSYTDFQKAVMEITKREK-----IDYLISIVEFNGRLDHCMSNINTLYKS-----S 105
            TPDQ++TDF KA++++    K     +  +  + E +GR DH + N+NTLYKS     +
Sbjct: 99  ETPDQNHTDFTKALLQVAHYAKTYKINLGEIYVLAETSGRFDHIIGNVNTLYKSDKLVGN 158

Query: 106 LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNN 165
           + +  +++  ++W+L+   GLH IH+       K   GL+P G PV  + +TGLKWNLNN
Sbjct: 159 IQVIQVASNSLTWILKP--GLHSIHIPEILVRQKSWCGLLPFGYPVNCISTTGLKWNLNN 216

Query: 166 HTLAFGGMVSSSNTYEN 182
            T+ FGG++S+SNTYE+
Sbjct: 217 TTMQFGGLISTSNTYED 233

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175769|gb|EFN65604.1| Thiamin pyrophosphokinase 1 [Camponotus floridanus]

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 17/200 (8%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDPA-----LYWPDLVTGDFDSVSSNSMGRFLALGSDIV 55
           +I  TVD GT RWL +L +H +D +      Y PDLVTGD DS   N + +   +GS IV
Sbjct: 9   QITVTVDGGTHRWLKYLEEHGIDLSNDEHKQYIPDLVTGDMDSCPPNIIEKVKNIGSTIV 68

Query: 56  PTPDQSYTDFQKAVMEI-----TKREKIDYLISIVEFNGRLDHCMSNINTLYKS-----S 105
            TPDQ++TD+ KA++++     TK   +  +  + E +GR DH + NINTLYKS     +
Sbjct: 69  KTPDQNHTDYTKALLQVAHYAKTKNINLGEIYVLAETSGRFDHIIGNINTLYKSDKLVGN 128

Query: 106 LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNN 165
           + +  +++  ++W L+   GLH I++           GL+P G PV  + ++GLKWNLNN
Sbjct: 129 VQVIQIASNSLTWSLKP--GLHTIYIPEILVKQHSWCGLLPFGRPVNCISTSGLKWNLNN 186

Query: 166 HTLAFGGMVSSSNTYENETT 185
            T+ FGG+VS+SNTY+N T+
Sbjct: 187 TTMQFGGLVSTSNTYDNLTS 206

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715759|ref|XP_003396376.1| PREDICTED: thiamin pyrophosphokinase 1-like [Bombus terrestris]

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 121/197 (61%), Gaps = 17/197 (8%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLD-----PALYWPDLVTGDFDSVSSNSMGRFLALGSDIV 55
           ++  TVD GT RWL +L +  +D        Y P+L+TGD DS S   + +  ++GS I+
Sbjct: 49  QVNVTVDGGTYRWLHYLEEQGIDLLNGNNTEYVPNLITGDMDSCSPLILEKLKSMGSMII 108

Query: 56  PTPDQSYTDFQKAVMEI---TKRE--KIDYLISIVEFNGRLDHCMSNINTLYKSS----- 105
            TPDQ +TD+ KA++++    K+E  K++ +    + +GR DH M NINTLY+S      
Sbjct: 109 KTPDQDHTDYTKALLQLGQYAKKEDIKLNGIYVFADTSGRFDHIMGNINTLYRSDKIIEH 168

Query: 106 LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNN 165
           + +  +++  ++WVLR   GLH I +           GL+PVG+PV  + +TGLKWNLNN
Sbjct: 169 VQVIQIASNSLTWVLRP--GLHSIIIPKILVENNSWCGLLPVGAPVNCIITTGLKWNLNN 226

Query: 166 HTLAFGGMVSSSNTYEN 182
            TL FGG+VSSSNTY+N
Sbjct: 227 ATLQFGGLVSSSNTYDN 243

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210579|gb|EFN87047.1| Thiamin pyrophosphokinase 1 [Harpegnathos saltator]

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 117/197 (59%), Gaps = 17/197 (8%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDP-----ALYWPDLVTGDFDSVSSNSMGRFLALGSDIV 55
           KI   VD G  RWL +L +  +D        Y PDL+TGD DS S   + +  ++GS +V
Sbjct: 52  KITVNVDGGIHRWLEYLKEIEIDVLNNEYRKYVPDLITGDMDSCSETVVEKLRSMGSTVV 111

Query: 56  PTPDQSYTDFQKAVMEITKREKID-----YLISIVEFNGRLDHCMSNINTLYKS-----S 105
            TPDQ+YTDF KA+++I +  ++       + + VE  GR DH + N NTLYKS     +
Sbjct: 112 RTPDQNYTDFTKALVQIEQYARLKNINLKEIYAFVETTGRFDHIIGNTNTLYKSEKLVGN 171

Query: 106 LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNN 165
           + +  ++A  ++W+LR   GLH+I++       K    L+P+G PV+ + +TGLKWNLNN
Sbjct: 172 IKVIQVAANSLTWILRC--GLHKINIPEELVQCKSWCSLMPLGHPVKHISTTGLKWNLNN 229

Query: 166 HTLAFGGMVSSSNTYEN 182
             L FG  +S+SNTY++
Sbjct: 230 APLIFGKKISTSNTYDS 246

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018046|ref|XP_003692948.1| PREDICTED: uncharacterized protein LOC100868914 [Apis florea]

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/197 (40%), Positives = 116/197 (58%), Gaps = 17/197 (8%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLD-----PALYWPDLVTGDFDSVSSNSMGRFLALGSDIV 55
           +I  TVD GT +WL +L +  +D        Y P+L+TGD DS S   + +   +GS I+
Sbjct: 248 QINVTVDGGTYKWLCYLKEQGIDLLNENHNEYVPNLITGDMDSCSPIILEKLKNMGSIII 307

Query: 56  PTPDQSYTDFQKAVMEI-----TKREKIDYLISIVEFNGRLDHCMSNINTLYKSS----- 105
            TPDQ +TD+ KA+ ++      K  K++ +    +F+GR DH M NINTLYKS      
Sbjct: 308 ETPDQDHTDYAKALFQLGQYVKMKNIKLNRIYVFTDFSGRFDHIMGNINTLYKSDTLIEH 367

Query: 106 LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNN 165
           + +  +++  M+W+LR   G H I +           GL+PVG+PV  + +TGLKWNLNN
Sbjct: 368 VQVIQIASDSMTWILRP--GFHSIIIPKILIQNNSWCGLLPVGAPVNCIITTGLKWNLNN 425

Query: 166 HTLAFGGMVSSSNTYEN 182
            TL FG +VS+SNTY+N
Sbjct: 426 ATLQFGDLVSTSNTYDN 442

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396907|ref|XP_003484707.1| PREDICTED: thiamin pyrophosphokinase 1-like [Bombus impatiens]

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 81/197 (41%), Positives = 118/197 (59%), Gaps = 17/197 (8%)

Query: 1   KIRCTVDQGTDRWLLFLNQH-----NLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIV 55
           ++  TVD GT RWL +L +      N D   Y P+L+TGD DS S   + +  ++GS I+
Sbjct: 48  QVNVTVDGGTYRWLHYLEEQGIDLLNEDNTEYVPNLITGDMDSCSPLILEKLKSMGSMII 107

Query: 56  PTPDQSYTDFQKAVMEI---TKREKIDY--LISIVEFNGRLDHCMSNINTLYKSS----- 105
            TPDQ +TD+ KA++++    K+E I+   +    + +GR DH M NINTLY+S      
Sbjct: 108 KTPDQDHTDYTKALLQLGQYAKKEDIELNGIYVFADTSGRFDHIMGNINTLYRSDKIIEH 167

Query: 106 LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNN 165
           + +  ++   ++WVLR   GLH I +           GL+P+G+PV  + +TGLKWNLNN
Sbjct: 168 VQVIQIANNSLTWVLRP--GLHSIIIPKILVENNSWCGLLPIGAPVNSIITTGLKWNLNN 225

Query: 166 HTLAFGGMVSSSNTYEN 182
            TL FG +VSSSNTY+N
Sbjct: 226 ATLQFGSLVSSSNTYDN 242

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031330|gb|EGI70843.1| Thiamin pyrophosphokinase 1 [Acromyrmex echinatior]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 115/195 (58%), Gaps = 17/195 (8%)

Query: 1   KIRCTVDQGTDRWLLFLNQH-----NLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIV 55
           +I  TVD GT RWL +L +      N++   Y PDL+TGD DS     + +F ++GS ++
Sbjct: 59  RITVTVDGGTQRWLKYLEEQGINALNIEHKHYVPDLITGDMDSCLPYIVEKFKSIGSTVI 118

Query: 56  PTPDQSYTDFQKAVMEITKREK-----IDYLISIVEFNGRLDHCMSNINTLYKS-----S 105
            TPDQ  TD  KA++E+    K     +D +  + E +GR DH ++N+NTLYKS     +
Sbjct: 119 KTPDQDNTDCTKALLEVAHYAKTHNINLDEVYVLAETSGRFDHIIANVNTLYKSDKLVGN 178

Query: 106 LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNN 165
             +  L++  M+W+L+   G+H IH+       K   GL+P G  V  + +TGLKWNLN 
Sbjct: 179 TRVIQLASNSMTWILKP--GMHSIHIPEILVQQKSWCGLLPFGCIVNCISTTGLKWNLNK 236

Query: 166 HTLAFGGMVSSSNTY 180
            T+ FGG++S+SNTY
Sbjct: 237 TTMQFGGLISTSNTY 251

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225710472|gb|ACO11082.1| Thiamin pyrophosphokinase 1 [Caligus rogercresseyi]

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/190 (42%), Positives = 118/190 (62%), Gaps = 15/190 (7%)

Query: 2   IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALG--SDIVPTPD 59
           +R TVD GTDRW  ++      P    PDL+ GDFDSVSS+++  F + G  S +V TPD
Sbjct: 44  LRVTVDGGTDRWRNWVGGRTDLPE---PDLICGDFDSVSSDTLEFFTSEGRRSVVVETPD 100

Query: 60  QSYTDFQKAVMEITKRE-KIDYLISIVEFNGRLDHCMSNINTLYKSS------LPIYLLS 112
           Q YTDF K +ME+ KR  ++    ++V+ +GRLD   +NI TL+ +S        +YL+ 
Sbjct: 101 QDYTDFTKCLMEVKKRRPELKTFFTLVQNSGRLDQIFANIETLFHASSLLGDDYLVYLMD 160

Query: 113 AKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGG 172
            + +SW+LR   G+H I  +     G+  +GLIP+ +PVQ   STGLKWNL++  LAFG 
Sbjct: 161 NESISWLLRP--GIHCIQYDAPI-EGQHYVGLIPIEAPVQSCTSTGLKWNLSDQELAFGK 217

Query: 173 MVSSSNTYEN 182
           +VS+SN ++ 
Sbjct: 218 LVSTSNEFDQ 227

Source: Caligus rogercresseyi

Species: Caligus rogercresseyi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225709148|gb|ACO10420.1| Thiamin pyrophosphokinase 1 [Caligus rogercresseyi]

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 118/190 (62%), Gaps = 15/190 (7%)

Query: 2   IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALG--SDIVPTPD 59
           +R TVD GTDRW  ++      P    PDL+ GDFDS+SS+++  F + G  S +V TPD
Sbjct: 44  LRVTVDGGTDRWRNWVGGRTDLPE---PDLICGDFDSISSDTLEFFTSEGRRSVVVETPD 100

Query: 60  QSYTDFQKAVMEITKRE-KIDYLISIVEFNGRLDHCMSNINTLYKSS------LPIYLLS 112
           Q YTDF K +ME+ KR  ++    ++V+ +GRLD   +NI TL+ +S        +YL+ 
Sbjct: 101 QDYTDFTKCLMEVKKRRPELKTFFTLVQNSGRLDQIFANIETLFHASSLLGDDYLVYLMD 160

Query: 113 AKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGG 172
            + +SW+LR   G+H I  +     G+  +GLIP+ +PVQ   STGLKWNL++  LAFG 
Sbjct: 161 NESISWLLRP--GIHCIQYDAPI-EGQHYVGLIPIEAPVQSCTSTGLKWNLSDQELAFGK 217

Query: 173 MVSSSNTYEN 182
           +VS+SN ++ 
Sbjct: 218 LVSTSNEFDQ 227

Source: Caligus rogercresseyi

Species: Caligus rogercresseyi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328700896|ref|XP_001945068.2| PREDICTED: thiamin pyrophosphokinase 1-like [Acyrthosiphon pisum]

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/196 (40%), Positives = 116/196 (59%), Gaps = 17/196 (8%)

Query: 2   IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQS 61
           +R TVD GT++W  F+ Q++ D  L +PDL+TGD DS +   + +F+++GS I+PTP Q 
Sbjct: 48  LRVTVDGGTNQWHSFVKQNSFD-DLKFPDLITGDLDSANPAVVEQFVSMGSKIIPTPSQD 106

Query: 62  YTDFQKAVMEITKR-----EKIDYLISIVEFNGRLDHCMSNINTLYKSSLP-------IY 109
            TDF KA+ E+ K      + ID +I +V    R+DH +SN+NTLYKS          IY
Sbjct: 107 ETDFTKALKEVKKYSAKNCKSIDSIIVMVNMCHRVDHFLSNLNTLYKSKTKDLYFNEDIY 166

Query: 110 LLSAKYMSWVLRANAGLHRIHLNPGFTSGKKT--LGLIPVGSPVQQVYSTGLKWNLNNHT 167
           LL    ++W+L+  AG HRIH+        +   +G  P+GS      +TGLKWNL+   
Sbjct: 167 LLGRNSLTWLLQ--AGTHRIHVPQSLRLHPENNYVGFFPMGSACNVCTTTGLKWNLSGTL 224

Query: 168 LAFGGMVSSSNTYENE 183
           +  GG+ SSSNT+  E
Sbjct: 225 MEMGGLTSSSNTFNGE 240

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
FB|FBgn0037942	345	CG14721 [Drosophila melanogast	0.956	0.515	0.385	3.5e-27
UNIPROTKB|Q9H3S4	243	TPK1 "Thiamin pyrophosphokinas	0.930	0.711	0.354	1.5e-26
UNIPROTKB|F1SAD1	243	TPK1 "Uncharacterized protein"	0.811	0.621	0.371	2.5e-26
MGI|MGI:1352500	243	Tpk1 "thiamine pyrophosphokina	0.940	0.720	0.352	2.5e-26
UNIPROTKB|Q5E9T4	243	TPK1 "Thiamin pyrophosphokinas	0.811	0.621	0.359	2.9e-25
UNIPROTKB|E1C3Q1	243	TPK1 "Uncharacterized protein"	0.962	0.736	0.340	4.6e-25
UNIPROTKB|E2QWC1	243	TPK1 "Uncharacterized protein"	0.930	0.711	0.328	6.8e-24
RGD|1589408	231	Tpk1 "thiamin pyrophosphokinas	0.940	0.757	0.331	6.8e-24
ZFIN|ZDB-GENE-041010-176	257	tpk1 "thiamin pyrophosphokinas	0.940	0.680	0.350	7e-22
UNIPROTKB|F5GZG6	194	TPK1 "Thiamin pyrophosphokinas	0.295	0.283	0.561	2.5e-21

FB|FBgn0037942 CG14721 [Drosophila melanogaster (taxid:7227)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 76/197 (38%), Positives = 111/197 (56%)

Query:     2 IRCTVDQGTDRWLLFLNQHNLDP-----ALYWP----DLVTGDFDSVSSNSMGRFLALGS 52
             +RC VD G++ W  F+    +       A   P    D++TGDFDS++  ++  F     
Sbjct:   124 VRCAVDGGSNHWRDFVVAQAMSKKANGSAPTTPLEPLDVITGDFDSITEETVDFFKTTPK 183

Query:    53 DIVPTPDQSYTDFQKA--VME-ITKREKIDYLISIVEFNGRLDHCMSNINTLYKS---SL 106
               V TPDQ  TDF KA  V++ +  + KI  ++   + +GRLD  M+N+NTLYKS   + 
Sbjct:   184 --VHTPDQDATDFTKAMAVLQPVMTQRKIQDVVVFHDTSGRLDQVMANLNTLYKSQKDNC 241

Query:   107 PIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNH 166
              ++LLS   ++W+LR   G H I +     + ++   L+PVGS    V +TGLKWNL + 
Sbjct:   242 NVFLLSGDSVTWLLRP--GKHTIQVPVDLVTSQRWCSLMPVGSSAHNVTTTGLKWNLYHA 299

Query:   167 TLAFGGMVSSSNTYENE 183
              L FGGMVS+SNTY  E
Sbjct:   300 QLEFGGMVSTSNTYATE 316

GO:0004788 "thiamine diphosphokinase activity" evidence=ISS

GO:0006772 "thiamine metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009229 "thiamine diphosphate biosynthetic process" evidence=IEA

UNIPROTKB|Q9H3S4 TPK1 "Thiamin pyrophosphokinase 1" [Homo sapiens (taxid:9606)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 67/189 (35%), Positives = 109/189 (57%)

Query:     2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQS 61
             +R   D G +R L  + +   +  L  P+ + GDFDS+       +   G +++ TPDQ 
Sbjct:    41 LRACADGGANR-LYDITEGERESFL--PEFINGDFDSIRPEVREYYATKGCELISTPDQD 97

Query:    62 YTDFQKAVMEITKR-E----KIDYLISIVEFNGRLDHCMSNINTLYKSS----LPIYLLS 112
             +TDF K +  + K+ E    K+D ++++    GR D  M+++NTL++++     PI ++ 
Sbjct:    98 HTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQ 157

Query:   113 AKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGG 172
              + + ++L+   G HR+H++ G        GLIPVG P  QV +TGLKWNL N  LAFG 
Sbjct:   158 EESLIYLLQP--GKHRLHVDTGMEGD--WCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGT 213

Query:   173 MVSSSNTYE 181
             +VS+SNTY+
Sbjct:   214 LVSTSNTYD 222

GO:0005524 "ATP binding" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0006772 "thiamine metabolic process" evidence=IEA

GO:0009229 "thiamine diphosphate biosynthetic process" evidence=IEA

GO:0004788 "thiamine diphosphokinase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0042723 "thiamine-containing compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1SAD1 TPK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 61/164 (37%), Positives = 102/164 (62%)

Query:    27 YWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKR--EK---IDYL 81
             + P+ V GDFDS+  +    +   G + + TPDQ +TDF K +  + K+  EK   +D +
Sbjct:    63 FLPEFVNGDFDSIRPDVREYYATKGCEFISTPDQDHTDFTKCLEVLQKKLEEKDLQVDMI 122

Query:    82 ISIVEFNGRLDHCMSNINTLYKSS----LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTS 137
             +++    GR D  M++++TL++++    LPI ++  + + ++L+   G H++H++ G   
Sbjct:   123 VTLGGLAGRFDQIMASVSTLFQATRITPLPIIIIQEESLIYLLQP--GKHKLHVDTGMEG 180

Query:   138 GKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYE 181
                  GLIPVG P  +V +TGLKWNL NHTL+FG +VS+SNTY+
Sbjct:   181 D--WCGLIPVGEPCSRVTTTGLKWNLTNHTLSFGTLVSTSNTYD 222

GO:0006772 "thiamine metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004788 "thiamine diphosphokinase activity" evidence=IEA

GO:0009229 "thiamine diphosphate biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1352500 Tpk1 "thiamine pyrophosphokinase" [Mus musculus (taxid:10090)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 66/187 (35%), Positives = 105/187 (56%)

Query:     2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQS 61
             +R   D G +  L  L +   +  L  P+ V+GDFDS+       +   G D++ TPDQ 
Sbjct:    41 LRACADGGANH-LYDLTEGERESFL--PEFVSGDFDSIRPEVKEYYTKKGCDLISTPDQD 97

Query:    62 YTDFQKAVMEITKR--EK---IDYLISIVEFNGRLDHCMSNINTLYKSS--LPIYLLSAK 114
             +TDF K +  + ++  EK   +D ++++    GR D  M+++NTL++++   P+ ++  +
Sbjct:    98 HTDFTKCLQVLQRKIEEKELQVDVIVTLGGLGGRFDQIMASVNTLFQATHITPVPIIIIQ 157

Query:   115 YMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMV 174
               S +     G HR+H++ G        GLIPVG P  QV +TGLKWNL N  L FG +V
Sbjct:   158 KDSLIYLLQPGKHRLHVDTGMEGS--WCGLIPVGQPCNQVTTTGLKWNLTNDVLGFGTLV 215

Query:   175 SSSNTYE 181
             S+SNTY+
Sbjct:   216 STSNTYD 222

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004788 "thiamine diphosphokinase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0006772 "thiamine metabolic process" evidence=IDA

GO:0009229 "thiamine diphosphate biosynthetic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|Q5E9T4 TPK1 "Thiamin pyrophosphokinase 1" [Bos taurus (taxid:9913)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 59/164 (35%), Positives = 100/164 (60%)

Query:    27 YWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKR--EK---IDYL 81
             + P+ ++GDFDS+       +   G +I+ TPDQ +TDF K +  + K+  EK   +D +
Sbjct:    63 FLPEFISGDFDSIRPEVREHYAIKGCEIISTPDQDHTDFTKCLEVLQKKIEEKDLQVDMI 122

Query:    82 ISIVEFNGRLDHCMSNINTLYKS----SLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTS 137
             +++    GR D  M++++TL+++    SLP+ ++  + + ++L+   G H++H++ G   
Sbjct:   123 VTLGGLAGRFDQIMASVSTLFQAPQITSLPVIIIQEESLIYLLQP--GKHKLHVDTGMEG 180

Query:   138 GKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYE 181
                  GLIPVG P  QV +TGLKWNL +  L FG +VS+SNTY+
Sbjct:   181 D--WCGLIPVGQPCNQVTTTGLKWNLTHQMLGFGTLVSTSNTYD 222

GO:0009229 "thiamine diphosphate biosynthetic process" evidence=IEA

GO:0006772 "thiamine metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004788 "thiamine diphosphokinase activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1C3Q1 TPK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 65/191 (34%), Positives = 104/191 (54%)

Query:     2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQS 61
             +R   D G +R L  + + + D  L  PD ++GDFDS+       + A G +++ T DQ 
Sbjct:    42 LRACADGGANR-LYHITEGSQDSFL--PDYISGDFDSIQPEVKAYYKAKGCELIETMDQD 98

Query:    62 YTDFQKAVMEITKR--EK---IDYLISIVEFNGRLDHCMSNINTLYKSS--LPIYLLSAK 114
             +TDF K +  + K+  EK   ID ++++    GR D  M+++ TL+ ++   P  ++  +
Sbjct:    99 FTDFTKCLQILQKKIEEKGLQIDLIVTLGGLGGRFDQTMASVETLFHATNITPFPVIVIQ 158

Query:   115 YMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMV 174
               S +     G H++ +N G        GLIP+GS    V +TGL+WNL N  L FG +V
Sbjct:   159 ESSLIYLLQPGKHKLQVNTGLEGS--WCGLIPIGSSCDSVTTTGLRWNLANQVLKFGTLV 216

Query:   175 SSSNTYENETT 185
             S+SNTY+N  T
Sbjct:   217 STSNTYDNSGT 227

GO:0005524 "ATP binding" evidence=IEA

GO:0009229 "thiamine diphosphate biosynthetic process" evidence=IEA

GO:0004788 "thiamine diphosphokinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006772 "thiamine metabolic process" evidence=IEA

UNIPROTKB|E2QWC1 TPK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 62/189 (32%), Positives = 108/189 (57%)

Query:     2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQS 61
             +R   D G +R  L+      +   + P+ ++GDFDS+       +   G +I+ TPDQ 
Sbjct:    41 LRACADGGANR--LYDTMEG-ERESFLPEFISGDFDSIRPEVKEYYAIKGCEIISTPDQD 97

Query:    62 YTDFQKAVMEITKR--EK---IDYLISIVEFNGRLDHCMSNINTLYKSS----LPIYLLS 112
             +TDF K +  + K+  EK   +D ++++    GR D  M++++TL++++    +PI ++ 
Sbjct:    98 HTDFTKCLELLQKKIEEKDLQVDVIVTLGGLAGRFDQIMASVSTLFQATCITPVPIIIIQ 157

Query:   113 AKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGG 172
              + + ++L+   G H++H++ G        GLIPVG     V +TGLKWNL N+ L FG 
Sbjct:   158 EESLIYLLQP--GKHKMHVDTGMEGD--WCGLIPVGQSCNHVTTTGLKWNLTNNVLGFGT 213

Query:   173 MVSSSNTYE 181
             +VS+SNTY+
Sbjct:   214 LVSTSNTYD 222

GO:0006772 "thiamine metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004788 "thiamine diphosphokinase activity" evidence=IEA

GO:0009229 "thiamine diphosphate biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|1589408 Tpk1 "thiamin pyrophosphokinase 1" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 62/187 (33%), Positives = 103/187 (55%)

Query:     2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQS 61
             +R   D G +  L  L +   + ++  P  + G  DS+ SN   +    G D++ TPDQ 
Sbjct:    29 LRACADGGANH-LYDLTEGERESSV--PHFLIGLLDSLDSNFFRKHNQTGCDLISTPDQD 85

Query:    62 YTDFQKAVMEITKR--EK---IDYLISIVEFNGRLDHCMSNINTLYKSS--LPIYLLSAK 114
             +TDF K +  + ++  EK   +D ++++    GR D  M+++NTL++++  +P+ ++  +
Sbjct:    86 HTDFTKCLQVLQRKIEEKELQVDVIVTLGGLGGRFDQIMASVNTLFQATDIIPVPIIIIQ 145

Query:   115 YMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMV 174
               S +     G HR+ ++ G        GLIPVG P   V +TGLKWNL N  L FG +V
Sbjct:   146 KESLIYLLQPGKHRLRVDTGMEGS--WCGLIPVGQPCNHVTTTGLKWNLTNDVLGFGTLV 203

Query:   175 SSSNTYE 181
             S+SNTY+
Sbjct:   204 STSNTYD 210

GO:0004788 "thiamine diphosphokinase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0006772 "thiamine metabolic process" evidence=IEA;ISO

GO:0009229 "thiamine diphosphate biosynthetic process" evidence=IEA

ZFIN|ZDB-GENE-041010-176 tpk1 "thiamin pyrophosphokinase 1" [Danio rerio (taxid:7955)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 67/191 (35%), Positives = 103/191 (53%)

Query:     1 KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQ 60
             +IR   D G +  L  L +   +  L  PD + GDFDS+       +      ++ TPDQ
Sbjct:    40 QIRACADGGANH-LYRLTEGRRESFL--PDYINGDFDSILPEVKAFYAGKNCKLMETPDQ 96

Query:    61 SYTDFQK--AVM--EI-TKREKIDYLISIVEFNGRLDHCMSNINTLYKSS----LPIYLL 111
               TDF K  A+M  EI  K+ +ID ++++    GR D  M+   TL+ +     LP+ ++
Sbjct:    97 DLTDFTKCLAIMLEEIKAKKLQIDSIVTLGGLGGRFDQTMATEETLFHAQKMTDLPVVVI 156

Query:   112 SAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFG 171
                 ++++L+     H++++N G     K   L+PVGSP     S GLKWNL+N  LAFG
Sbjct:   157 QDSSLAFLLKEGRH-HQLNVNTGMEG--KWCSLVPVGSPCLTTTS-GLKWNLDNQVLAFG 212

Query:   172 GMVSSSNTYEN 182
              +VS+SNTYE+
Sbjct:   213 QLVSTSNTYED 223

GO:0004788 "thiamine diphosphokinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009229 "thiamine diphosphate biosynthetic process" evidence=IEA

GO:0006772 "thiamine metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F5GZG6 TPK1 "Thiamin pyrophosphokinase 1" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
 Identities = 32/57 (56%), Positives = 39/57 (68%)

Query:   125 GLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYE 181
             G HR+H++ G        GLIPVG P  QV +TGLKWNL N  LAFG +VS+SNTY+
Sbjct:   119 GKHRLHVDTGMEGD--WCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYD 173

GO:0004788 "thiamine diphosphokinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009229 "thiamine diphosphate biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9R0M5	TPK1_MOUSE	2, ., 7, ., 6, ., 2	0.3719	0.8118	0.6213	yes	N/A
Q9H3S4	TPK1_HUMAN	2, ., 7, ., 6, ., 2	0.3658	0.8118	0.6213	yes	N/A
Q5E9T4	TPK1_BOVIN	2, ., 7, ., 6, ., 2	0.3575	0.8172	0.6255	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.6	LOW CONFIDENCE prediction!
4th Layer	2.7.6.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	186
cd07995	208	cd07995, TPK, Thiamine pyrophosphokinase	2e-35
TIGR01378	205	TIGR01378, thi_PPkinase, thiamine pyrophosphokinas	4e-31
PLN02714	229	PLN02714, PLN02714, thiamin pyrophosphokinase	2e-30
pfam04263	122	pfam04263, TPK_catalytic, Thiamin pyrophosphokinas	5e-21
COG1564	212	COG1564, THI80, Thiamine pyrophosphokinase [Coenzy	1e-19
pfam04265	66	pfam04265, TPK_B1_binding, Thiamin pyrophosphokina	1e-12
smart00983	66	smart00983, TPK_B1_binding, Thiamin pyrophosphokin	9e-10

>gnl|CDD|153431 cd07995, TPK, Thiamine pyrophosphokinase

 Score =  122 bits (309), Expect = 2e-35
 Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 21/187 (11%)

Query: 2   IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPD-Q 60
           +    D G +  L       +      PDL+ GDFDS+S   +  + + G +I+  PD +
Sbjct: 24  LIIAADGGANHLL----DLGI-----VPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDEK 74

Query: 61  SYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYK---SSLPIYLLSAKYMS 117
            +TDF+KA+    +R   D ++ +    GRLDH ++N+N L K     + I L+  +   
Sbjct: 75  DFTDFEKALKLALER-GADEIVILGATGGRLDHTLANLNLLLKYAKDGIKIVLIDEQNEI 133

Query: 118 WVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSS 177
           ++L    G H + L        K + LIP+G  V  +   GLK+ L+N TL+FG  + +S
Sbjct: 134 FLL--LPGSHTLELEEE----GKYVSLIPLG-EVTGLTLKGLKYPLDNATLSFGSSLGTS 186

Query: 178 NTYENET 184
           N +  E 
Sbjct: 187 NEFTGEK 193

Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis. Length = 208

>gnl|CDD|233386 TIGR01378, thi_PPkinase, thiamine pyrophosphokinase

 Score =  111 bits (280), Expect = 4e-31
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 11/160 (6%)

Query: 29  PDLVTGDFDSVSSNSMGRFLALGSDIVP-TPDQSYTDFQKAVMEITKREKIDYLISIVEF 87
           PDL+ GDFDS+    +  +   G  I+   P++  TD + A+    +R   D +  +   
Sbjct: 40  PDLIVGDFDSIDEEELDFYKETGVKIIVFPPEKDTTDLELALKYALER-GADEITILGAT 98

Query: 88  NGRLDHCMSNINTLYKSSLP---IYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGL 144
            GRLDH ++N+N L + +     + L+  + +  +L    G ++I   P  T     + L
Sbjct: 99  GGRLDHTLANLNLLLEYAKRGIEVRLIDEQNVIRLLLP--GKYQIFKEPKGT----YISL 152

Query: 145 IPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENET 184
           +P G  V  + + GLK+ LNN  L FGG    SN +    
Sbjct: 153 LPFGGDVHGLTTKGLKYPLNNADLKFGGTRGISNEFIGNK 192

This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 205

>gnl|CDD|178316 PLN02714, PLN02714, thiamin pyrophosphokinase

 Score =  110 bits (277), Expect = 2e-30
 Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 10/164 (6%)

Query: 27  YWPDLVTGDFDSVSSNSMGRFLALGSDIVP-TPDQSYTDFQKAVMEITKR----EKIDYL 81
           Y PD++ GD DS+    +  +  LG+ IV  + DQ  TD  K +  I       +K +  
Sbjct: 53  YKPDVIKGDMDSIRPEVLDFYSNLGTKIVDESHDQDTTDLHKCIAYIRDSTPDLDKSNLC 112

Query: 82  ISIV-EFNGRLDHCMSNINTLYK-SSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGK 139
           I ++    GR DH   NIN LY+   L I LLS   +  +L A    H IH++       
Sbjct: 113 ILVLGALGGRFDHEAGNINVLYRFPDLRIVLLSDDCLIRLLPAT-HRHEIHIDSSVEG-- 169

Query: 140 KTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENE 183
              GLIP+G P     +TGL+WNL+N  + FGG++S+SN  + +
Sbjct: 170 PHCGLIPIGGPSASTTTTGLQWNLDNTEMRFGGLISTSNIVKED 213

Length = 229

>gnl|CDD|217995 pfam04263, TPK_catalytic, Thiamin pyrophosphokinase, catalytic domain

 Score = 83.2 bits (206), Expect = 5e-21
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 12/115 (10%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQ 60
            +R   D G +R   FL           PD + GDFDS++      +   G ++V  P++
Sbjct: 16  DLRVAADGGANRLRDFL--------GLKPDFIVGDFDSITEELRALYKEAGVNLVHFPEK 67

Query: 61  SYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYK---SSLPIYLLS 112
             TD + A+ E  +    D ++ +    GRLDH ++N+N L +   +   I+LL 
Sbjct: 68  DDTDLELALKEALQLG-ADEIVILGALGGRLDHALANLNLLLRLAYTDNTIFLLD 121

Family of thiamin pyrophosphokinase (EC:2.7.6.2). Thiamin pyrophosphokinase (TPK) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggest that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis. Length = 122

>gnl|CDD|224480 COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]

 Score = 81.9 bits (203), Expect = 1e-19
 Identities = 51/173 (29%), Positives = 72/173 (41%), Gaps = 17/173 (9%)

Query: 9   GTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKA 68
             D     L +  L P     DL  GDFDSVS   +  +      I    ++  TD + A
Sbjct: 29  AADGGANHLLELGLVP-----DLAVGDFDSVSEELLAYYKEKTVTIKFPAEKDSTDLELA 83

Query: 69  VMEITKREKIDYLISIVEFNGRLDHCMSNINTLY---KSSLPIYLLSAKYMSWVLRANAG 125
           + E  +R   + +I +    GRLDH ++N+  L    KS   I L+S + +   L    G
Sbjct: 84  LDEALERGADEIVI-LGALGGRLDHALANLFLLLRPAKSGFKITLISGQNLITPLP--PG 140

Query: 126 LHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSN 178
            H I  +PG+         I  G  V  +   G K+ L N  L FG   S SN
Sbjct: 141 QHTIEKDPGYLY------SIFGGEDVAGLTIKGAKYPLKNADLPFGSSRSISN 187

Length = 212

>gnl|CDD|217997 pfam04265, TPK_B1_binding, Thiamin pyrophosphokinase, vitamin B1 binding domain

 Score = 59.5 bits (145), Expect = 1e-12
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 125 GLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENET 184
           G H I   P      K    +P+G PV  + + GLK+ L N  L+FG  +S+SN + +ET
Sbjct: 1   GKHLIKKEPD----YKYCSFLPLGEPVN-LTTKGLKYPLTNQDLSFGSSISTSNEFIDET 55

Family of thiamin pyrophosphokinase (EC:2.7.6.2). Thiamin pyrophosphokinase (TPK) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggest that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis. Length = 66

>gnl|CDD|214953 smart00983, TPK_B1_binding, Thiamin pyrophosphokinase, vitamin B1 binding domain

 Score = 52.2 bits (126), Expect = 9e-10
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 138 GKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTY 180
             K   LIP+G  V  + + GLK+ L N  L+FG  +S+SN +
Sbjct: 10  DGKYCSLIPLG-DVAGLTTKGLKYPLENADLSFGSSLSTSNEF 51

Thiamin pyrophosphokinase (TPK) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggest that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
TIGR01378	203	thi_PPkinase thiamine pyrophosphokinase. This mode	100.0
PLN02714	229	thiamin pyrophosphokinase	100.0
cd07995	208	TPK Thiamine pyrophosphokinase. Thiamine pyrophosp	100.0
KOG3153|consensus	250		100.0
COG1564	212	THI80 Thiamine pyrophosphokinase [Coenzyme metabol	100.0
PF04263	123	TPK_catalytic: Thiamin pyrophosphokinase, catalyti	100.0
PF04265	68	TPK_B1_binding: Thiamin pyrophosphokinase, vitamin	99.57
COG4825	395	Uncharacterized membrane-anchored protein conserve	98.72
COG1634	232	Uncharacterized Rossmann fold enzyme [General func	98.0
PF01973	170	MAF_flag10: Protein of unknown function DUF115; In	94.57
cd00886	152	MogA_MoaB MogA_MoaB family. Members of this family	92.38
smart00852	135	MoCF_biosynth Probable molybdopterin binding domai	91.28
cd00758	133	MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) bindin	90.55
TIGR00177	144	molyb_syn molybdenum cofactor synthesis domain. Th	90.39
TIGR02667	163	moaB_proteo molybdenum cofactor biosynthesis prote	89.3
PF00994	144	MoCF_biosynth: Probable molybdopterin binding doma	88.47
cd00885	170	cinA Competence-damaged protein. CinA is the first	87.93
cd00887	394	MoeA MoeA family. Members of this family are invol	82.65
PRK03670	252	competence damage-inducible protein A; Provisional	81.12
PRK08621	142	galactose-6-phosphate isomerase subunit LacA; Revi	80.88

>TIGR01378 thi_PPkinase thiamine pyrophosphokinase

Probab=100.00  E-value=1.1e-52  Score=340.83  Aligned_cols=167  Identities=28%  Similarity=0.468  Sum_probs=155.1

Q ss_pred             EEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCCE
Q psy16241          2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKIDY   80 (186)
Q Consensus         2 ~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~~   80 (186)
                      ++|||||||++|+++         +++||++||||||++++.+++|++++++++++| +||+||+|+||+++.+ +++++
T Consensus        20 ~~i~aDgGa~~l~~~---------gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~~~eKD~TD~e~Al~~~~~-~~~~~   89 (203)
T TIGR01378        20 LVIAADGGANHLLKL---------GLTPDLIVGDFDSIDEEELDFYKKAGVKIIVFPPEKDTTDLELALKYALE-RGADE   89 (203)
T ss_pred             EEEEEChHHHHHHHC---------CCCCCEEEeCcccCCHHHHHHHHHcCCceEEcCCCCCCCHHHHHHHHHHH-CCCCE
Confidence            689999999999999         899999999999999999999999999998875 9999999999999998 69999


Q ss_pred             EEEEEcCCCchhHHHHHHHHHHhcC---CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCceeeeEEe
Q psy16241         81 LISIVEFNGRLDHCMSNINTLYKSS---LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYST  157 (186)
Q Consensus        81 i~v~G~~GgR~DH~l~ni~~l~~~~---~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~vt~~  157 (186)
                      |+++||+|||+||+|+|+++|+++.   .+++++++++++++++  +|.+.+..+.    .+++|||||+++++++||++
T Consensus        90 i~i~Ga~GgR~DH~lani~~L~~~~~~~~~i~l~d~~~~i~~l~--~g~~~~~~~~----~~~~~Sl~pl~~~~~~vt~~  163 (203)
T TIGR01378        90 ITILGATGGRLDHTLANLNLLLEYAKRGIKVRLIDEQNVIRLLL--PGKYQIFKEP----KGTYISLLPFGGDAHGLTTK  163 (203)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCcEEEEEc--CCCEEEecCC----CCCEEEEEECCCCcccEEee
Confidence            9999999999999999999999864   7899999999999998  8988775432    47999999999888889999


Q ss_pred             cceEecCCcccccCCcceeeeeEecCC
Q psy16241        158 GLKWNLNNHTLAFGGMVSSSNTYENET  184 (186)
Q Consensus       158 Glky~L~~~~l~~~~~~~~SNe~~~~~  184 (186)
                      ||||||+++.|.++.++++|||+.+++
T Consensus       164 Glky~L~~~~l~~~~~~~~SNe~~~~~  190 (203)
T TIGR01378       164 GLKYPLNNAHLKFGGSRGISNEFIGNK  190 (203)
T ss_pred             CCEeecCCceeeCCCeeEECeeEECCc
Confidence            999999999999999999999998764

This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.

>PLN02714 thiamin pyrophosphokinase

Probab=100.00  E-value=6.2e-52  Score=341.98  Aligned_cols=181  Identities=33%  Similarity=0.562  Sum_probs=155.9

Q ss_pred             CEEEEEchhHHHHHHhhhc----C--CCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHH
Q psy16241          1 KIRCTVDQGTDRWLLFLNQ----H--NLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEIT   73 (186)
Q Consensus         1 ~~~IaaDgGa~~l~~~~~~----~--~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~   73 (186)
                      .++|||||||++|++++..    +  ..++.+++||++||||||++++++++|++++++++++| +||+||+|+||+++.
T Consensus        21 ~~~i~aDgGa~~l~~~~~~~~~~~~~~~~~~gi~Pd~iiGDfDSi~~e~~~~~~~~~~~i~~~~~eKD~TD~e~Al~~~~  100 (229)
T PLN02714         21 KLRVCADGGANRLYDEMPLLFPDEDPLAVRNRYKPDVIKGDMDSIRPEVLDFYSNLGTKIVDESHDQDTTDLHKCIAYIR  100 (229)
T ss_pred             cEEEEecCcHHHHHhhhhhccccccccccccCcCCCEEEeeccCCCHHHHHHHHHCCCEEEECCCCcccCHHHHHHHHHH
Confidence            4789999999999994211    0  00234899999999999999999999999999998875 999999999999998


Q ss_pred             hh-----cCCCEEEEEEcCCCchhHHHHHHHHHHhcC-CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEec
Q psy16241         74 KR-----EKIDYLISIVEFNGRLDHCMSNINTLYKSS-LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPV  147 (186)
Q Consensus        74 ~~-----~~~~~i~v~G~~GgR~DH~l~ni~~l~~~~-~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl  147 (186)
                      ++     .++++|+|+||+|||+||+|+||++|+++. .++++++++++++++++ ++.+.++.....  .+++|||||+
T Consensus       101 ~~~~~~~~~~~~I~v~Ga~GGRlDH~laNi~~L~~~~~~~i~lid~~~~i~~l~~-~~~~~i~~~~~~--~~~~~Slipl  177 (229)
T PLN02714        101 DSTPDLDKSNLCILVLGALGGRFDHEAGNINVLYRFPDLRIVLLSDDCLIRLLPA-THRHEIHIDSSV--EGPHCGLIPI  177 (229)
T ss_pred             HhccccccCCceEEEEcccCCchHHHHHHHHHHHhcCCceEEEEcCCcEEEEEcC-CCeEEEeecCCC--CCCEEEEEEC
Confidence            63     245899999999999999999999999976 78999999999999972 356777654333  5899999999


Q ss_pred             CCceeeeEEecceEecCCcccccCCcceeeeeEecCC
Q psy16241        148 GSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENET  184 (186)
Q Consensus       148 ~~~~~~vt~~Glky~L~~~~l~~~~~~~~SNe~~~~~  184 (186)
                      ++++++||++||||||++..|.++.++|+|||+.+++
T Consensus       178 ~~~~~~vt~~Glky~L~~~~l~~~~~~~vSNe~~~~~  214 (229)
T PLN02714        178 GGPSASTTTTGLQWNLDNTEMRFGGLISTSNIVKEDK  214 (229)
T ss_pred             CCCcceEEeeCceeeCCCCeeeCCCceEEeeEEcCCE
Confidence            9887789999999999999999999999999998653

>cd07995 TPK Thiamine pyrophosphokinase

Probab=100.00  E-value=8.5e-52  Score=336.44  Aligned_cols=167  Identities=32%  Similarity=0.549  Sum_probs=156.3

Q ss_pred             CEEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCC
Q psy16241          1 KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKID   79 (186)
Q Consensus         1 ~~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~   79 (186)
                      .++||||||+++|+++         |++||++||||||+++++++++++++++++++| +||+||+|+||+++.+ ++++
T Consensus        23 ~~~i~aDgGa~~l~~~---------gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~KD~TD~e~Al~~~~~-~~~~   92 (208)
T cd07995          23 DLIIAADGGANHLLDL---------GIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDEKDFTDFEKALKLALE-RGAD   92 (208)
T ss_pred             CEEEEEChHHHHHHHc---------CCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHHH-cCCC
Confidence            3789999999999999         899999999999999999999999999999998 5999999999999998 6999


Q ss_pred             EEEEEEcCCCchhHHHHHHHHHHhcC---CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCceeeeEE
Q psy16241         80 YLISIVEFNGRLDHCMSNINTLYKSS---LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYS  156 (186)
Q Consensus        80 ~i~v~G~~GgR~DH~l~ni~~l~~~~---~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~vt~  156 (186)
                      +|+++||+|||+||+|+|+++|+++.   .+++|+++++.+++++  +|.++++.+.    .+++|||||++++ ++||+
T Consensus        93 ~i~i~Ga~GgR~DH~lani~~l~~~~~~~~~~~l~d~~~~i~~l~--~g~~~i~~~~----~~~~~Sl~pl~~~-~~vt~  165 (208)
T cd07995          93 EIVILGATGGRLDHTLANLNLLLKYAKDGIKIVLIDEQNEIFLLL--PGSHTLELEE----EGKYVSLIPLGEV-TGLTL  165 (208)
T ss_pred             EEEEEccCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCcEEEEEc--CCCEEEeecC----CCCEEEEEeccCC-cceEE
Confidence            99999999999999999999999974   7899999999999998  8999887653    4799999999998 68999


Q ss_pred             ecceEecCCcccccCCcceeeeeEecCC
Q psy16241        157 TGLKWNLNNHTLAFGGMVSSSNTYENET  184 (186)
Q Consensus       157 ~Glky~L~~~~l~~~~~~~~SNe~~~~~  184 (186)
                      +||||||+++++.++.++++|||+.+++
T Consensus       166 ~Glky~L~~~~l~~~~~~~~SNe~~~~~  193 (208)
T cd07995         166 KGLKYPLDNATLSFGSSLGTSNEFTGEK  193 (208)
T ss_pred             eCCEEecCCceEeCCCeEEEeEEEeCCe
Confidence            9999999999999999999999999853

Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.

>KOG3153|consensus

Probab=100.00  E-value=1.6e-47  Score=308.41  Aligned_cols=177  Identities=40%  Similarity=0.663  Sum_probs=161.8

Q ss_pred             CEEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhh-----
Q psy16241          1 KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKR-----   75 (186)
Q Consensus         1 ~~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~-----   75 (186)
                      ++++|||||||+++++..    ++...+||+|+|||||+++++.++|++.|+++++.|+||.|||.||++++.++     
T Consensus        48 ~lRvcaDGgaNrlyd~~~----~~~~~~Pd~I~GDfDSi~~ev~~yy~~~g~~vV~~pdQd~TDftKcv~~i~~~~~~~e  123 (250)
T KOG3153|consen   48 KLRVCADGGANRLYDYLS----DRTSEKPDYICGDFDSITEEVDDYYKKNGVTVVHTPDQDTTDFTKCVKWIQEHKTLTE  123 (250)
T ss_pred             heeEeccCchhhhhhhcc----cccccCCceeecchhhhhHHHHHHHHhcCCeeEeCCCcCcchHHHHHHHHHHhccccc
Confidence            579999999999999953    45579999999999999999999999999999999999999999999999885     


Q ss_pred             cCCCEEEEEEcCCCchhHHHHHHHHHHhcC---CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCcee
Q psy16241         76 EKIDYLISIVEFNGRLDHCMSNINTLYKSS---LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQ  152 (186)
Q Consensus        76 ~~~~~i~v~G~~GgR~DH~l~ni~~l~~~~---~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~  152 (186)
                      +.+..|+++|++|||+||+|+|+.+|+++.   .++.++.+.+.+++++  ||.|+++++....-.++.|||+|++.++.
T Consensus       124 ~~~~~IvvlgglgGRfDq~m~nln~Ly~~~~~~~~i~llt~~~li~Ll~--pg~h~ie~~v~~~~~~~~CGLiPIGq~~~  201 (250)
T KOG3153|consen  124 WKFLNIVVLGGLGGRFDQTMANLNTLYRAVDIQFPIFLLTEDSLIDLLQ--PGKHRIELHVNLGMTGKWCGLIPIGQPET  201 (250)
T ss_pred             ceeeeEEEecccCccHHHHHHhHHHhhehhccccceEEecCCchHhhhc--CCCceEEeccccccccCceeeeeccccee
Confidence            234569999999999999999999999998   6799999999999999  89998777755433678899999999999


Q ss_pred             eeEEecceEecCCcccccCCcceeeeeEecC
Q psy16241        153 QVYSTGLKWNLNNHTLAFGGMVSSSNTYENE  183 (186)
Q Consensus       153 ~vt~~Glky~L~~~~l~~~~~~~~SNe~~~~  183 (186)
                      .+|+.||||+|.|..+.||+.+|+||.+.++
T Consensus       202 ~ktT~GLkWnl~n~~~~fgglvStsN~~~~~  232 (250)
T KOG3153|consen  202 VKTTTGLKWNLSNRRMKFGGLVSTSNTYDGE  232 (250)
T ss_pred             eeeecccccccccceeecceEEeecceeecc
Confidence            9999999999999999999999999998875

>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]

Probab=100.00  E-value=1.7e-46  Score=304.46  Aligned_cols=163  Identities=27%  Similarity=0.387  Sum_probs=150.4

Q ss_pred             EEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCCE
Q psy16241          2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKIDY   80 (186)
Q Consensus         2 ~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~~   80 (186)
                      .+||||||+++|+++         +++|+++||||||++++++++|++..+. +++| +||+||+|+|+++|.+ +++++
T Consensus        26 ~~v~aDgGa~~l~~~---------gl~P~~~vGDfDSv~~e~~~~~~~~~~~-~~f~~eKd~TD~elAl~~a~e-~g~d~   94 (212)
T COG1564          26 KIVAADGGANHLLEL---------GLVPDLAVGDFDSVSEELLAYYKEKTVT-IKFPAEKDSTDLELALDEALE-RGADE   94 (212)
T ss_pred             eEEEECcHHHHHHHc---------CCCccEEEecccccCHHHHHHHhhcCcc-eecChhhccchHHHHHHHHHH-cCCCE
Confidence            489999999999999         8999999999999999999999998766 7776 9999999999999999 79999


Q ss_pred             EEEEEcCCCchhHHHHHHHHHHhcC---CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCceeeeEEe
Q psy16241         81 LISIVEFNGRLDHCMSNINTLYKSS---LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYST  157 (186)
Q Consensus        81 i~v~G~~GgR~DH~l~ni~~l~~~~---~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~vt~~  157 (186)
                      |+++||+|||+||+|+|+.+++++.   .++.+++++|.++.++  +|.|.+..+     .+..+|+|+.. .+.++|++
T Consensus        95 i~i~Ga~GGR~DH~l~nl~ll~~~~~~~~~i~l~~~~n~~~~l~--~g~~~i~~~-----~~~~~s~f~~~-~~~~Lti~  166 (212)
T COG1564          95 IVILGALGGRLDHALANLFLLLRPAKSGFKITLISGQNLITPLP--PGQHTIEKD-----PGYLYSIFGGE-DVAGLTIK  166 (212)
T ss_pred             EEEEecCCChHHHHHHHHHHHHhhhhccceEEEecCCceEEEeC--CCceEeccC-----CCccEEEEecc-cccceEec
Confidence            9999999999999999999999986   7899999999999999  899988876     45677777744 46789999


Q ss_pred             cceEecCCcccccCCcceeeeeEecC
Q psy16241        158 GLKWNLNNHTLAFGGMVSSSNTYENE  183 (186)
Q Consensus       158 Glky~L~~~~l~~~~~~~~SNe~~~~  183 (186)
                      |+||||+++.+.++..+++|||+.+.
T Consensus       167 g~KypL~~~~~~~g~~~siSN~~~~~  192 (212)
T COG1564         167 GAKYPLKNADLPFGSSRSISNEFIGD  192 (212)
T ss_pred             cceeeccCccccccceeEEeeeeeCC
Confidence            99999999999999999999999985

>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2

Probab=100.00  E-value=2.2e-36  Score=227.65  Aligned_cols=103  Identities=32%  Similarity=0.564  Sum_probs=89.6

Q ss_pred             CEEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCE
Q psy16241          1 KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDY   80 (186)
Q Consensus         1 ~~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~   80 (186)
                      +++||||||+++++++.        +++||++||||||++++++++|+++|++++++|+||+||+|+||+++.+ .++++
T Consensus        17 ~~~i~aDgGa~~l~~~~--------g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~kD~TD~e~Al~~~~~-~~~~~   87 (123)
T PF04263_consen   17 DFIIAADGGANRLYELF--------GIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFPEKDYTDLEKALEYAIE-QGPDE   87 (123)
T ss_dssp             SEEEEETTHHHHHHHTT--------TT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE-STTS-HHHHHHHHHHH-TTTSE
T ss_pred             CEEEEEchHHHHHHHhc--------CCCCCEEEecCCCCChHHHHHHHhhccceecccccccCHHHHHHHHHHH-CCCCE
Confidence            47999999999999982        4999999999999999999999999999999999999999999999987 79999


Q ss_pred             EEEEEcCCCchhHHHHHHHHHHhcC---CCEEEEc
Q psy16241         81 LISIVEFNGRLDHCMSNINTLYKSS---LPIYLLS  112 (186)
Q Consensus        81 i~v~G~~GgR~DH~l~ni~~l~~~~---~~i~l~~  112 (186)
                      |+++||+|||+||+|+|+++|+++.   .+++|+|
T Consensus        88 i~v~Ga~GgR~DH~lanl~~l~~~~~~~~~i~lid  122 (123)
T PF04263_consen   88 IIVLGALGGRFDHTLANLNLLYKYKKRGIKIVLID  122 (123)
T ss_dssp             EEEES-SSSSHHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred             EEEEecCCCcHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            9999999999999999999999886   6777765

7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....

>PF04265 TPK_B1_binding: Thiamin pyrophosphokinase, vitamin B1 binding domain; InterPro: IPR007373 Thiamin pyrophosphokinase (TPK, 2

Probab=99.57  E-value=2.4e-15  Score=101.86  Aligned_cols=57  Identities=39%  Similarity=0.710  Sum_probs=50.6

Q ss_pred             CeEEEEeCCCCCCCCCEEEEEecCCceeeeEEecceEecCCcccccCCcceeeeeEecCC
Q psy16241        125 GLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENET  184 (186)
Q Consensus       125 g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~vt~~Glky~L~~~~l~~~~~~~~SNe~~~~~  184 (186)
                      |+|+|+.+..+  .|++|||||+++.+. ||++|+||||+++.|.++.++++|||+.+++
T Consensus         1 G~h~i~~~~~~--~g~~~Sl~pl~~~~~-vt~~Glky~L~~~~l~~~~~~~~SNe~~~~~   57 (68)
T PF04265_consen    1 GTHEIKKDEGY--EGKYVSLFPLGEPVT-VTIKGLKYPLDNYTLSFGSSIGISNEFIEDS   57 (68)
T ss_dssp             EEEEEE-BTTC--CEEEEEEEESSSEEE-EEEESBSSEEEEEEEBTTTBTEEEEEBSSSC
T ss_pred             CcEEEEECCCc--cCCEEEEEECcCCeE-EEEeCCEEECccceecCCCeeEECeEEECCc
Confidence            67889888765  679999999999876 9999999999999999999999999998654

7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggest that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0009229 thiamine diphosphate biosynthetic process; PDB: 3LM8_B 1IG0_A 3CQ9_A 3L8M_B 3IHK_B 3MEL_B 2HH9_A 2F17_B 1IG3_B 2G9Z_A ....

>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]

Probab=98.72  E-value=4.1e-08  Score=83.19  Aligned_cols=81  Identities=23%  Similarity=0.325  Sum_probs=67.6

Q ss_pred             EEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHH-------------------HHHhcCCceeeCC-CCC
Q psy16241          2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMG-------------------RFLALGSDIVPTP-DQS   61 (186)
Q Consensus         2 ~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~-------------------~~~~~g~~i~~~p-dkD   61 (186)
                      +.|+|||+|+.+.++         |++|++||||.|||+.+++.                   .+...|+--+.|| .-.
T Consensus       209 vlIgVdGaAD~l~~~---------GykP~lIvGdp~~i~~~aLR~ga~vvlpad~dGhApGleRiQdLGvgAmTFP~~gs  279 (395)
T COG4825         209 VLIGVDGAADVLRKA---------GYKPQLIVGDPDQISTEALRCGAKVVLPADADGHAPGLERIQDLGVGAMTFPAAGS  279 (395)
T ss_pred             EEEEccchHHHHHHc---------CCCcceeecCcchhhHHHHhcccceeeccCCCCCCchHHHHHhcCcceeeccCCCc
Confidence            579999999999999         89999999999999999854                   6677788888888 345


Q ss_pred             ccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHHH
Q psy16241         62 YTDFQKAVMEITKREKIDYLISIVEFNGRLDHCM   95 (186)
Q Consensus        62 ~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~l   95 (186)
                      +||  +|+.+|.+ .|+..++.+|+.-+ +|-+|
T Consensus       280 stD--lAllLAd~-hga~~lv~vG~~~~-~~~ff  309 (395)
T COG4825         280 STD--LALLLADH-HGAALLVTVGHRAN-IETFF  309 (395)
T ss_pred             hhh--HHHHHhhc-cCcceeEecCCccc-HHHHH
Confidence            555  78888887 69999999998876 55555

>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]

Probab=98.00  E-value=2.9e-05  Score=63.78  Aligned_cols=77  Identities=21%  Similarity=0.163  Sum_probs=56.2

Q ss_pred             EEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceee-------------------------
Q psy16241          2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVP-------------------------   56 (186)
Q Consensus         2 ~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~-------------------------   56 (186)
                      .+|+|||+++.+++.         |+.||++|+|+|-= ++.+-...++|..++.                         
T Consensus        75 ~vi~AdgA~~~l~~~---------gi~pDiiVTDlDgd-~e~~~~~~~~g~i~VVHAHGDNi~~i~~~~~~~~~vigTtQ  144 (232)
T COG1634          75 VVIAADGAVSALLER---------GIRPDIIVTDLDGD-PEDLLSCTAKGSIVVVHAHGDNIWRIPKVVPVLDRVIGTTQ  144 (232)
T ss_pred             eEEeccHHHHHHHHc---------CCCCcEEEecCCCC-HHHHHHhhccCCEEEEEecCcCHHHhhccccccceeecccc
Confidence            689999999999999         89999999999983 3333333333321110                         


Q ss_pred             -CC-C-----CCccHHHHHHHHHHhhcCCCEEEEEEcCCC
Q psy16241         57 -TP-D-----QSYTDFQKAVMEITKREKIDYLISIVEFNG   89 (186)
Q Consensus        57 -~p-d-----kD~TD~e~Al~~~~~~~~~~~i~v~G~~Gg   89 (186)
                       .| +     --+||..-|.-+|.. +|+.+|++.|...+
T Consensus       145 ~~P~~~v~NfgGFTDGDRAa~LA~~-lgA~~I~l~GfdF~  183 (232)
T COG1634         145 VRPFDRVYNFGGFTDGDRAAFLAYY-LGAEKIRLVGFDFG  183 (232)
T ss_pred             cCCCcceeccCCCCCchHHHHHHHH-hCCCeEEEeeecCC
Confidence             01 1     246999999999987 89999999997765

>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function

Probab=94.57  E-value=0.18  Score=39.23  Aligned_cols=27  Identities=26%  Similarity=0.245  Sum_probs=24.5

Q ss_pred             EEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCC
Q psy16241          2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDS   38 (186)
Q Consensus         2 ~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDS   38 (186)
                      ++||||..+..+.+.         |++||++|- +|.
T Consensus        51 ~iia~~sa~~~L~~~---------gI~Pd~~v~-~D~   77 (170)
T PF01973_consen   51 IIIAVNSALKALLKN---------GIKPDFVVS-IDP   77 (170)
T ss_pred             EEEEecHHHHHHHHc---------CceEEEEEE-cCC
Confidence            689999999999998         899999998 666

>cd00886 MogA_MoaB MogA_MoaB family

Probab=92.38  E-value=0.5  Score=36.31  Aligned_cols=66  Identities=12%  Similarity=0.174  Sum_probs=50.0

Q ss_pred             CCCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHH
Q psy16241         36 FDSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTL  101 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l  101 (186)
                      .||-.+-..+.+++.|+++....  ..|.-++..+|+.+.+..+++-|+..|+.| |+.|++-.-+.-+
T Consensus        18 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~~~   86 (152)
T cd00886          18 EDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRPL   86 (152)
T ss_pred             ccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHHHH
Confidence            68888888888999998877643  235566888888876522689999999999 7999977665544

Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.

>smart00852 MoCF_biosynth Probable molybdopterin binding domain

Probab=91.28  E-value=0.83  Score=34.13  Aligned_cols=65  Identities=15%  Similarity=0.169  Sum_probs=50.7

Q ss_pred             CCCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHHH
Q psy16241         36 FDSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTLY  102 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l~  102 (186)
                      .|+-.+...+++++.|..+....  ..|..+.+.+++.+.+  .++-|+..|++| |+-|++-..+.-+.
T Consensus        16 ~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~--~~dliittGG~g~g~~D~t~~~l~~~~   83 (135)
T smart00852       16 YDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALE--RADLVITTGGTGPGPDDVTPEAVAEAL   83 (135)
T ss_pred             ccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHh--CCCEEEEcCCCCCCCCcCcHHHHHHHh
Confidence            47777777889999997765431  2477778899988875  488999999999 89999988776654

This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.

>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD)

Probab=90.55  E-value=2  Score=32.14  Aligned_cols=65  Identities=15%  Similarity=0.206  Sum_probs=49.8

Q ss_pred             CCCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHHH
Q psy16241         36 FDSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTLY  102 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l~  102 (186)
                      .||-.+-..+++++.|.++...+  ..|.-.+..+++.+.+  .++-|++.|++| |+.||+-.-+.-+.
T Consensus        17 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~--~~DlvittGG~g~g~~D~t~~ai~~~g   84 (133)
T cd00758          17 EDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASR--EADLVLTTGGTGVGRRDVTPEALAELG   84 (133)
T ss_pred             EEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHh--cCCEEEECCCCCCCCCcchHHHHHHhc
Confidence            47777777788999998777643  3355668888888876  389999999999 79999887665543

This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.

>TIGR00177 molyb_syn molybdenum cofactor synthesis domain

Probab=90.39  E-value=0.82  Score=34.80  Aligned_cols=65  Identities=11%  Similarity=0.104  Sum_probs=51.1

Q ss_pred             CCCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHHH
Q psy16241         36 FDSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTLY  102 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l~  102 (186)
                      .||-.+-..+.+++.|+++....  ..|..++..+++.+.+  +++-|++.|++| |+-|++-..+.-+.
T Consensus        25 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~--~~DliIttGG~g~g~~D~t~~ai~~~g   92 (144)
T TIGR00177        25 YDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVD--EADVVLTTGGTGVGPRDVTPEALEELG   92 (144)
T ss_pred             EeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHh--CCCEEEECCCCCCCCCccHHHHHHHhC
Confidence            47877888889999998887642  3366778999988764  699999999999 68999887766543

The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.

>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial

Probab=89.30  E-value=1.4  Score=34.50  Aligned_cols=65  Identities=11%  Similarity=0.095  Sum_probs=49.6

Q ss_pred             CCCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHH
Q psy16241         36 FDSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTL  101 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l  101 (186)
                      .|+-.+-....+++.|.++..+   || |.-++..+++.+.+..+++-|++.|++| |.-|++-..+.-+
T Consensus        20 ~d~n~~~l~~~L~~~G~~v~~~~iv~D-d~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~~l   88 (163)
T TIGR02667        20 DDTSGQYLVERLTEAGHRLADRAIVKD-DIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALEPL   88 (163)
T ss_pred             CCCcHHHHHHHHHHCCCeEEEEEEcCC-CHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHHHH
Confidence            5776666777889999877654   44 6677889998876424799999999999 7999887766554

This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.

>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity

Probab=88.47  E-value=0.61  Score=35.27  Aligned_cols=65  Identities=17%  Similarity=0.146  Sum_probs=49.7

Q ss_pred             CCCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHHHh
Q psy16241         36 FDSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTLYK  103 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l~~  103 (186)
                      .||-..-..+++++.|.++...   || |..+.+.++..+.+  ..+-|+..|++| |+-|++.-.+.-+..
T Consensus        15 ~d~n~~~l~~~l~~~G~~v~~~~~v~D-d~~~i~~~l~~~~~--~~D~VittGG~g~~~~D~t~~a~~~~~~   83 (144)
T PF00994_consen   15 RDSNGPFLAALLEELGIEVIRYGIVPD-DPDAIKEALRRALD--RADLVITTGGTGPGPDDVTPEALAEAGG   83 (144)
T ss_dssp             EBHHHHHHHHHHHHTTEEEEEEEEEES-SHHHHHHHHHHHHH--TTSEEEEESSSSSSTTCHHHHHHHHHSS
T ss_pred             EEhHHHHHHHHHHHcCCeeeEEEEECC-CHHHHHHHHHhhhc--cCCEEEEcCCcCcccCCcccHHHHHhcC
Confidence            4565566678888999877653   44 88899999988876  359999999999 799998866654443

The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....

>cd00885 cinA Competence-damaged protein

Probab=87.93  E-value=1.4  Score=34.70  Aligned_cols=66  Identities=12%  Similarity=0.172  Sum_probs=49.9

Q ss_pred             CCCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHHHhc
Q psy16241         36 FDSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTLYKS  104 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l~~~  104 (186)
                      .|+-.+-..+.+++.|..+...   || |...+..++..+.+  .++-|++.|++| ++-|++-..+.-+...
T Consensus        17 ~d~n~~~l~~~L~~~G~~v~~~~~v~D-d~~~I~~~l~~~~~--~~dlVIttGG~G~t~~D~t~ea~~~~~~~   86 (170)
T cd00885          17 VDTNAAFLAKELAELGIEVYRVTVVGD-DEDRIAEALRRASE--RADLVITTGGLGPTHDDLTREAVAKAFGR   86 (170)
T ss_pred             EEhHHHHHHHHHHHCCCEEEEEEEeCC-CHHHHHHHHHHHHh--CCCEEEECCCCCCCCCChHHHHHHHHhCC
Confidence            3665666667888889877653   44 66678899988875  589999999999 7999998777765543

CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.

>cd00887 MoeA MoeA family

Probab=82.65  E-value=8.9  Score=34.08  Aligned_cols=63  Identities=21%  Similarity=0.233  Sum_probs=50.1

Q ss_pred             CCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHH
Q psy16241         37 DSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTL  101 (186)
Q Consensus        37 DSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l  101 (186)
                      ||-+.-....+++.|.++..+.  ..|...+..+|+.+.+  .++-|+..|+.| |+.|++-..+.-+
T Consensus       194 dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~--~~DliittGG~s~g~~D~~~~al~~~  259 (394)
T cd00887         194 DSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALE--EADVVITSGGVSVGDYDFVKEVLEEL  259 (394)
T ss_pred             EChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhh--CCCEEEEeCCCCCCcchhHHHHHHhC
Confidence            7777777788999998887753  3356778899998875  489999999998 8999988776654

Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.

>PRK03670 competence damage-inducible protein A; Provisional

Probab=81.12  E-value=4.2  Score=34.16  Aligned_cols=66  Identities=18%  Similarity=0.136  Sum_probs=48.8

Q ss_pred             CCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHHHhc
Q psy16241         37 DSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTLYKS  104 (186)
Q Consensus        37 DSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l~~~  104 (186)
                      |+-..-..+++.+.|+.+...   || |.-+...+++.+.. ..++-|++.|++| +.-|.+...++-++..
T Consensus        19 dtN~~~la~~L~~~G~~v~~~~iV~D-d~~~I~~~l~~a~~-~~~DlVIttGGlGpt~dD~T~eava~a~g~   88 (252)
T PRK03670         19 DSNSAFIAQKLTEKGYWVRRITTVGD-DVEEIKSVVLEILS-RKPEVLVISGGLGPTHDDVTMLAVAEALGR   88 (252)
T ss_pred             ehhHHHHHHHHHHCCCEEEEEEEcCC-CHHHHHHHHHHHhh-CCCCEEEECCCccCCCCCchHHHHHHHhCC
Confidence            554455557788899877653   44 67778888888765 4689999999999 6899988776665543

>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed

Probab=80.88  E-value=13  Score=28.71  Aligned_cols=47  Identities=13%  Similarity=0.119  Sum_probs=34.9

Q ss_pred             HHHHHHHhcCCceeeC-CC--CCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241         42 NSMGRFLALGSDIVPT-PD--QSYTDFQKAVMEITKREKIDYLISIVEFN   88 (186)
Q Consensus        42 ~~~~~~~~~g~~i~~~-pd--kD~TD~e~Al~~~~~~~~~~~i~v~G~~G   88 (186)
                      .+.++++++|.+++.+ |+  -|+.|+..++-........+.=++++++|
T Consensus        17 ~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~~~~~GIliCGTG   66 (142)
T PRK08621         17 VVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYG   66 (142)
T ss_pred             HHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCC
Confidence            4567888888888875 42  48899888887777544567778888888

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	186
3s4y_A	247	Crystal Structure Of Human Thiamin Pyrophosphokinas		9e-28
1ig3_A	263	Mouse Thiamin Pyrophosphokinase Complexed With Thia		1e-27
2hh9_A	339	Thiamin Pyrophosphokinase From Candida Albicans Len		1e-06
2g9z_A	348	Thiamin Pyrophosphokinase From Candida Albicans Len		1e-06
3cq9_A	227	Crystal Structure Of The Lp_1622 Protein From Lacto		3e-05
3lm8_A	222	Crystal Structure Of Thiamine Pyrophosphokinase Fro		5e-04
1ig0_A	319	Crystal Structure Of Yeast Thiamin Pyrophosphokinas		7e-04
3l8m_A	212	Crystal Structure Of A Probable Thiamine Pyrophosph		9e-04

>pdb|3S4Y|A Chain A, Crystal Structure Of Human Thiamin Pyrophosphokinase 1 Length = 247

Iteration: 1
 Score =  119 bits (298), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 98/164 (59%), Gaps = 13/164 (7%)
Query: 27  YWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKR-----EKIDYL 81
           + P+ + GDFDS+       +   G +++ TPDQ +TDF K +  + K+      K+D +
Sbjct: 67  FLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVDVI 126
Query: 82  ISIVEFNGRLDHCMSNINTLYKSS----LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTS 137
           +++    GR D  M+++NTL++++     PI ++  + + ++L+   G HR+H++ G   
Sbjct: 127 VTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLLQP--GKHRLHVDTGMEG 184
Query: 138 GKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYE 181
                GLIPVG P  QV +TGLKWNL N  LAFG +VS+SNTY+
Sbjct: 185 --DWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYD 226

>pdb|1IG3|A Chain A, Mouse Thiamin Pyrophosphokinase Complexed With Thiamin Length = 263

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 100/165 (60%), Gaps = 13/165 (7%)
Query: 27  YWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVM----EITKRE-KIDYL 81
           + P+ V+GDFDS+       +   G D++ TPDQ +TDF K +     +I ++E ++D +
Sbjct: 83  FLPEFVSGDFDSIRPEVKEYYTKKGCDLISTPDQDHTDFTKCLQVLQRKIEEKELQVDVI 142
Query: 82  ISIVEFNGRLDHCMSNINTLYKSS----LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTS 137
           +++    GR D  M+++NTL++++    +PI ++    + ++L+   G HR+H++ G   
Sbjct: 143 VTLGGLGGRFDQIMASVNTLFQATHITPVPIIIIQKDSLIYLLQP--GKHRLHVDTGMEG 200
Query: 138 GKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYEN 182
                GLIPVG P  QV +TGLKWNL N  L FG +VS+SNTY+ 
Sbjct: 201 --SWCGLIPVGQPCNQVTTTGLKWNLTNDVLGFGTLVSTSNTYDG 243

>pdb|2HH9|A Chain A, Thiamin Pyrophosphokinase From Candida Albicans Length = 339

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 52/207 (25%)
Query: 27  YWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEI--------TKR--- 75
           Y PD + GDFDS+S +    + + GS I+    Q Y DF K++  I        TK    
Sbjct: 118 YIPDYIVGDFDSISPDVKTYYESHGSKIIRQSSQYYNDFTKSIHCIQLHYQLNHTKENWF 177
Query: 76  EKIDYL---------------------ISIVEFN---GRLDHCMSNINTLY-----KSSL 106
           E ID +                     I+I   N   GR D  + +IN LY        +
Sbjct: 178 ESIDEVDGLAKLWNGLNNSSDVVVDIDITIYVLNAIGGRFDQTVQSINQLYIMNEDYPKV 237
Query: 107 PIYLLSAKYMSWVLRANAGLHRI--------HLNPGFTSGKKTLGLIPVGSPVQQVY-ST 157
            ++ ++   + ++L+   G++ I        H + G +S   T GL+P+ +    +  S 
Sbjct: 238 TVFFITTNDIIFLLK--KGVNYISYKNRLMFHKDNG-SSPTPTCGLLPLSNKTPIILNSY 294
Query: 158 GLKWNLNNHTLAFGGMVSSSNTYENET 184
           GLK+++ N      G VSSSN    ET
Sbjct: 295 GLKYDMRNWKTEMLGQVSSSNRISGET 321

>pdb|2G9Z|A Chain A, Thiamin Pyrophosphokinase From Candida Albicans Length = 348

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 52/207 (25%)
Query: 27  YWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEI--------TKR--- 75
           Y PD + GDFDS+S +    + + GS I+    Q Y DF K++  I        TK    
Sbjct: 118 YIPDYIVGDFDSISPDVKTYYESHGSKIIRQSSQYYNDFTKSIHCIQLHYQLNHTKENWF 177
Query: 76  EKIDYL---------------------ISIVEFN---GRLDHCMSNINTLY-----KSSL 106
           E ID +                     I+I   N   GR D  + +IN LY        +
Sbjct: 178 ESIDEVDGLAKLWNGLNNSSDVVVDIDITIYVLNAIGGRFDQTVQSINQLYIMNEDYPKV 237
Query: 107 PIYLLSAKYMSWVLRANAGLHRI--------HLNPGFTSGKKTLGLIPVGSPVQQVY-ST 157
            ++ ++   + ++L+   G++ I        H + G +S   T GL+P+ +    +  S 
Sbjct: 238 TVFFITTNDIIFLLK--KGVNYISYKNRLMFHKDNG-SSPTPTCGLLPLSNKTPIILNSY 294
Query: 158 GLKWNLNNHTLAFGGMVSSSNTYENET 184
           GLK+++ N      G VSSSN    ET
Sbjct: 295 GLKYDMRNWKTEMLGQVSSSNRISGET 321

>pdb|3CQ9|A Chain A, Crystal Structure Of The Lp_1622 Protein From Lactobacillus Plantarum. Northeast Structural Genomics Consortium Target Lpr114 Length = 227

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 9   GTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFL-ALGSDIVPTPDQSYTDFQK 67
           G DR  L L +  + P       V GDFDS+ +  +     AL   IV  PDQ +TD Q 
Sbjct: 29  GADRGALRLVKRGIQPVX-----VVGDFDSIDAAELQTVKDALVGAIVVKPDQDHTDTQL 83
Query: 68  AVMEITKREKIDYLISIVEFNGRLDHCMSN 97
           A+  I ++ + D +       GRLDH ++N
Sbjct: 84  AIKSIFEQLQPDEVHLYGATGGRLDHLLAN 113

>pdb|3LM8|A Chain A, Crystal Structure Of Thiamine Pyrophosphokinase From Bacillus Subtilis, Northeast Structural Genomics Consortium Target Sr677 Length = 222

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 13/150 (8%)
Query: 34  GDFDSVSSNSMGRFLALGSDI-VPTPDQSYTDFQKAV-MEITKREKIDYLISIVEFNGRL 91
           GDFDS++     R       + V   ++  TD   A+   + K+  I  +  I    GR 
Sbjct: 50  GDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFGIT--GGRA 107
Query: 92  DHCMSNINTLYK---SSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVG 148
           DH + NI  LYK   +++ I L+  +  + +     G + I  +      K+ +  IP  
Sbjct: 108 DHFLGNIQLLYKGVKTNIKIRLIDKQ--NHIQXFPPGEYDIEKD----ENKRYISFIPFS 161
Query: 149 SPVQQVYSTGLKWNLNNHTLAFGGMVSSSN 178
             + ++  TG K+ LNN  +  G  +  SN
Sbjct: 162 EDIHELTLTGFKYPLNNCHITLGSTLCISN 191

>pdb|1IG0|A Chain A, Crystal Structure Of Yeast Thiamin Pyrophosphokinase Length = 319

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 81/229 (35%), Gaps = 52/229 (22%)
Query: 2   IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQS 61
           ++   D   +R   +L+        Y P+ + GD DS+S      +      I+    Q 
Sbjct: 64  LKVCADGAANRLYDYLDDDETLRIKYLPNYIIGDLDSLSEKVYKYYRKNKVTIIKQTTQY 123
Query: 62  YTDFQKAV---------------------------MEITKREKIDY-------------- 80
            TDF K V                           +E+ K     Y              
Sbjct: 124 STDFTKCVNLISLHFNSPEFRSLISNKDNLQSNHGIELEKGIHTLYNTMTESLVFSKVTP 183
Query: 81  --LISIVEFNGRLDHCMSNINTLYKSSLPIYLLSAKYMS-----WVLRANAGLHRIHLNP 133
             L+++    GR D  + +I  LY  S         YM+     ++++ N  L  I  +P
Sbjct: 184 ISLLALGGIGGRFDQTVHSITQLYTLSENASYFKLCYMTPTDLIFLIKKNGTL--IEYDP 241
Query: 134 GF-TSGKKTLGLIPVGSPVQQVYSTGLKWNLNN-HTLAFGGMVSSSNTY 180
            F  +     GL+P+G       + GLKW++ N  T    G VSSSN +
Sbjct: 242 QFRNTCIGNCGLLPIGEATLVKETRGLKWDVKNWPTSVVTGRVSSSNRF 290

>pdb|3L8M|A Chain A, Crystal Structure Of A Probable Thiamine Pyrophosphokinase From Staphylococcus Saprophyticus Subsp. Saprophyticus. Northeast Structural Genomics Consortium Target Id Syr86 Length = 212

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 18/175 (10%)
Query: 9   GTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVP-TPDQSYTDFQK 67
           G DR  L L +  +      P    GDFDS+S +S   F+    +I P   ++  TD   
Sbjct: 27  GIDRGTLILLESGI-----TPQFAVGDFDSIS-DSERNFIQQQIEINPYNSEKDDTDLAL 80
Query: 68  AVMEITKR--EKIDYLISIVEFNGRLDHCMSNINTLYKSSLPIYLLSAKYMSWVLRANA- 124
            + +  KR    ID   +     GRLDH    +  L K   P Y      +  +   N  
Sbjct: 81  GIDQAVKRGYRNIDVYGAT---GGRLDHFXGALQILEK---PEYAKXNINIKLIDDTNEI 134
Query: 125 -GLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSN 178
             + +   N  ++     +  IPV  P   +   G K+NL N TL  G  ++ SN
Sbjct: 135 QFIQKGQFNVTYSEQFPYISFIPVIYPTV-ISLKGFKYNLQNETLKLGSTLTISN 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
2g9z_A	348	Thiamine pyrophosphokinase; thiamin-PNP, TPK, thia	3e-35
3s4y_A	247	Thiamin pyrophosphokinase 1; structural genomics,	2e-34
1ig0_A	319	Thiamin pyrophosphokinase; protein-substrate compl	5e-33
3lm8_A	222	Thiamine pyrophosphokinase; structural genomics, P	8e-25
3mel_A	222	Thiamin pyrophosphokinase family protein; structur	2e-24
3k94_A	223	Thiamin pyrophosphokinase; structural genomics, PS	2e-24
3ihk_A	218	Thiamin pyrophosphokinase; structural genomics, PS	4e-23
3cq9_A	227	Uncharacterized protein LP_1622; Q88WK7_lacpl, tra	2e-21
3l8m_A	212	Probable thiamine pyrophosphokinase; thiamin dipho	4e-21
2omk_A	231	Hypothetical protein; succinimide, thiamin pyropho	2e-16

>2g9z_A Thiamine pyrophosphokinase; thiamin-PNP, TPK, thiamin pyrophosphokinase, structural GENO profun, bacterial targets at IGS-CNRS, france, BIGS; HET: VNP; 1.96A {Candida albicans} PDB: 2hh9_A* Length = 348

 Score =  125 bits (315), Expect = 3e-35
 Identities = 53/240 (22%), Positives = 90/240 (37%), Gaps = 57/240 (23%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDPAL-------YWPDLVTGDFDSVSSNSMGRFLALGSD 53
           +I    D G +    + N +N            Y PD + GDFDS+S +    + + GS 
Sbjct: 85  EIIVCADGGANSLYEYFNDNNHHHHHENLQRSDYIPDYIVGDFDSISPDVKTYYESHGSK 144

Query: 54  IVPTPDQSYTDFQKAVMEITKR----------------------------------EKID 79
           I+    Q Y DF K++  I                                       ID
Sbjct: 145 IIRQSSQYYNDFTKSIHCIQLHYQLNHTKENWFESIDEVDGLAKLWNGLNNSSDVVVDID 204

Query: 80  YLISIV-EFNGRLDHCMSNINTLYKSS-----LPIYLLSAKYMSWVLRANAGLHRIHLNP 133
             I ++    GR D  + +IN LY  +     + ++ ++   + ++L+   G++ I    
Sbjct: 205 ITIYVLNAIGGRFDQTVQSINQLYIMNEDYPKVTVFFITTNDIIFLLKK--GVNYISYKN 262

Query: 134 GFTSGK-------KTLGLIPVGSPVQQVYST-GLKWNLNNHTLAFGGMVSSSNTYENETT 185
                K        T GL+P+ +    + ++ GLK+++ N      G VSSSN    ET 
Sbjct: 263 RLMFHKDNGSSPTPTCGLLPLSNKTPIILNSYGLKYDMRNWKTEMLGQVSSSNRISGETG 322

>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A* Length = 247

 Score =  120 bits (302), Expect = 2e-34
 Identities = 63/194 (32%), Positives = 102/194 (52%), Gaps = 16/194 (8%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQ 60
            +R   D G +R              + P+ + GDFDS+       +   G +++ TPDQ
Sbjct: 44  LLRACADGGANRLYDITEGERES---FLPEFINGDFDSIRPEVREYYATKGCELISTPDQ 100

Query: 61  SYTDFQKAVMEITKRE-----KIDYLISIVEFNGRLDHCMSNINTLYK----SSLPIYLL 111
            +TDF K +  + K+      K+D ++++    GR D  M+++NTL++    +  PI ++
Sbjct: 101 DHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIII 160

Query: 112 SAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFG 171
             + + ++L+     HR+H++ G        GLIPVG P  QV +TGLKWNL N  LAFG
Sbjct: 161 QEESLIYLLQPGK--HRLHVDTGME--GDWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFG 216

Query: 172 GMVSSSNTYENETT 185
            +VS+SNTY+    
Sbjct: 217 TLVSTSNTYDGSGV 230

>1ig0_A Thiamin pyrophosphokinase; protein-substrate complex, compound active site, alpha-beta- alpha, beta sandwich, transferase; HET: VIB; 1.80A {Saccharomyces cerevisiae} SCOP: b.82.6.1 c.100.1.1 Length = 319

 Score =  119 bits (298), Expect = 5e-33
 Identities = 45/234 (19%), Positives = 78/234 (33%), Gaps = 52/234 (22%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQ 60
            ++   D   +R   +L+        Y P+ + GD DS+S      +      I+    Q
Sbjct: 63  DLKVCADGAANRLYDYLDDDETLRIKYLPNYIIGDLDSLSEKVYKYYRKNKVTIIKQTTQ 122

Query: 61  SYTDFQKAVMEI-------------------------------------------TKREK 77
             TDF K V  I                                             +  
Sbjct: 123 YSTDFTKCVNLISLHFNSPEFRSLISNKDNLQSNHGIELEKGIHTLYNTMTESLVFSKVT 182

Query: 78  IDYLISIVEFNGRLDHCMSNINTLYK-----SSLPIYLLSAKYMSWVLRANAGLHRIHLN 132
              L+++    GR D  + +I  LY      S   +  ++   + ++++       I  +
Sbjct: 183 PISLLALGGIGGRFDQTVHSITQLYTLSENASYFKLCYMTPTDLIFLIKK--NGTLIEYD 240

Query: 133 PGF-TSGKKTLGLIPVGSPVQQVYSTGLKWNLNN-HTLAFGGMVSSSNTYENET 184
           P F  +     GL+P+G       + GLKW++ N  T    G VSSSN +  + 
Sbjct: 241 PQFRNTCIGNCGLLPIGEATLVKETRGLKWDVKNWPTSVVTGRVSSSNRFVGDN 294

>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis} Length = 222

 Score = 95.2 bits (236), Expect = 8e-25
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 20/188 (10%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVP-TPD 59
            +   VD+GT      L    + P         GDFDS++     R       +     +
Sbjct: 26  TLWIGVDKGTVT----LLDAGIIP-----VEAFGDFDSITEQERRRIEKAAPALHVYQAE 76

Query: 60  QSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYK---SSLPIYLLSAKYM 116
           +  TD   A+    ++ + D +       GR DH + NI  LYK   +++ I L+  +  
Sbjct: 77  KDQTDLDLALDWALEK-QPDIIQIFGITGGRADHFLGNIQLLYKGVKTNIKIRLIDKQNH 135

Query: 117 SWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSS 176
             +     G + I  +      K+ +  IP    + ++  TG K+ LNN  +  G  +  
Sbjct: 136 IQMFPP--GEYDIEKDEN----KRYISFIPFSEDIHELTLTGFKYPLNNCHITLGSTLCI 189

Query: 177 SNTYENET 184
           SN   +  
Sbjct: 190 SNELIHSR 197

>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis} Length = 222

 Score = 94.1 bits (233), Expect = 2e-24
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 6   VDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTD 64
           +D+G       L + +L        L  GDFDS+S             ++  P ++  TD
Sbjct: 29  IDRGCLH----LLEADLPL-----QLAVGDFDSLSREEYHFVQETTETLIQAPAEKDDTD 79

Query: 65  FQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYK-----SSLPIYLLSAKYMSWV 119
            Q A+ E  +R     +  I    GR+DH ++N+   ++         I L   +     
Sbjct: 80  TQLALQEALQRFPQAEMTIIGATGGRIDHLLANLWLPFEPRFQGVLRQIRLCDRQNSIQY 139

Query: 120 LRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNT 179
                G + +   P      + L    +  PV+ +     K+ L N  + +    +S+  
Sbjct: 140 YA--PGSYIVPKEPDK----EYLAYCCLT-PVENLTLRRSKYLLTNQDVPYPTSYASNEF 192

Query: 180 YENETT 185
            E    
Sbjct: 193 IEEAAA 198

>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans} Length = 223

 Score = 94.1 bits (233), Expect = 2e-24
 Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 18/181 (9%)

Query: 6   VDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTD 64
           VD+GT      L +    P         GDFDS+ +  + +      D+   P ++  TD
Sbjct: 30  VDRGTMT----LLEAGFRP-----VRAFGDFDSLPAEDVVKLQQAFPDLDVWPAEKDKTD 80

Query: 65  FQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYK-SSLPIYLLSAKYMSWVLRAN 123
            + A+    ++     +       GRLDH   N+  L K +  PI ++  + +  V    
Sbjct: 81  MEIALDWAVEQ-TARCIRLFGATGGRLDHLFGNVELLLKYADRPIEIVDRQNVLTVHLP- 138

Query: 124 AGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENE 183
            G + +  +         +  IPV   V +   TG K+ L N  ++ G  +  SN     
Sbjct: 139 -GTYTVMYDAR----YCYVSYIPVSETVAEFTLTGFKYPLTNCHISRGSTLCISNELIQS 193

Query: 184 T 184
           +
Sbjct: 194 S 194

>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans} Length = 218

 Score = 90.9 bits (225), Expect = 4e-23
 Identities = 42/182 (23%), Positives = 69/182 (37%), Gaps = 20/182 (10%)

Query: 9   GTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQK 67
           G D+   FL ++ L       DL  GDFDSVS+    +  A    +V  P +++ TD + 
Sbjct: 24  GIDKGSSFLLKNQLPL-----DLAIGDFDSVSAEEFKQIKAKAKKLVMAPAEKNDTDTEL 78

Query: 68  AVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSL-----PIYLLSAKYMSWVLRA 122
           A+  I        +I    F GR+DH +SNI       L        L   + +      
Sbjct: 79  ALKTIFDCFGRVEIIVFGAFGGRIDHMLSNIFLPSDPDLAPFMRCFKLRDEQNLVEFF-- 136

Query: 123 NAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYEN 182
            AG H+I              +  + +    +     K+ L      F   + SSN +++
Sbjct: 137 PAGQHQIEQATDMVY------ISFMAANGAHLSIQDAKYELTEENY-FQKKIYSSNEFKD 189

Query: 183 ET 184
           + 
Sbjct: 190 KP 191

>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase, thiamine pyrophosphokinase, NESG, LPR114, structural genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1} Length = 227

 Score = 86.4 bits (213), Expect = 2e-21
 Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 24/185 (12%)

Query: 6   VDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVP-TPDQSYTD 64
            D+G  R +    +  + P      +V GDFDS+ +  +          +   PDQ +TD
Sbjct: 30  ADRGALRLV----KRGIQP-----VMVVGDFDSIDAAELQTVKDALVGAIVVKPDQDHTD 80

Query: 65  FQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSL-----PIYLLSAKYMSWV 119
            Q A+  I ++ + D +       GRLDH ++N+  +           I L+  +     
Sbjct: 81  TQLAIKSIFEQLQPDEVHLYGATGGRLDHLLANMWLVLDPVFRQWAPQIKLIDKQNSVRF 140

Query: 120 LRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNT 179
                G ++I         K+ L  +P+      +     K+ L+    A+  +  +SN 
Sbjct: 141 FL--PGDYQITKEA----DKRYLAFVPLMP--MHLTLPDEKYQLDAAYNAY-PISWASNE 191

Query: 180 YENET 184
           +   T
Sbjct: 192 FSGNT 196

>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus} Length = 212

 Score = 85.6 bits (211), Expect = 4e-21
 Identities = 40/189 (21%), Positives = 62/189 (32%), Gaps = 22/189 (11%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQ 60
           +    +D+GT   L    +  + P         GDFDS+S +                ++
Sbjct: 23  EHWIGIDRGTLILL----ESGITP-----QFAVGDFDSISDSERNFIQQQIEINPYNSEK 73

Query: 61  SYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSL-----PIYLLSAKY 115
             TD    + +  KR     +       GRLDH M  +  L K         I L+    
Sbjct: 74  DDTDLALGIDQAVKR-GYRNIDVYGATGGRLDHFMGALQILEKPEYAKMNINIKLIDDTN 132

Query: 116 MSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVS 175
               +    G   +  +  F      +  IPV      +   G K+NL N TL  G  ++
Sbjct: 133 EIQFI--QKGQFNVTYSEQF----PYISFIPVI-YPTVISLKGFKYNLQNETLKLGSTLT 185

Query: 176 SSNTYENET 184
            SN      
Sbjct: 186 ISNELSQSC 194

>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron} Length = 231

 Score = 73.3 bits (179), Expect = 2e-16
 Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 14/156 (8%)

Query: 29  PDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFN 88
           PD++ GD DS+      RF    S I+   DQ   D  K  +   + + I  +  +    
Sbjct: 75  PDVIIGDGDSLLPEYKKRF---SSIILQISDQETNDQTK-AVHYLQSKGIRKIAIVGATG 130

Query: 89  GRLDHCMSNINTLYKSSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVG 148
            R DH + NI+ L +       +            +        PG     + + +I  G
Sbjct: 131 KREDHTLGNISLLVEYMRSGMEVRTVTDYGTFIPVSDTQSFASYPG-----QQVSIINFG 185

Query: 149 SPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENET 184
              + + + GL + L++ T  + G   + N    + 
Sbjct: 186 --AKGLKAEGLFYPLSDFTNWWQG---TLNEAIADE 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
3s4y_A	247	Thiamin pyrophosphokinase 1; structural genomics,	100.0
3k94_A	223	Thiamin pyrophosphokinase; structural genomics, PS	100.0
3lm8_A	222	Thiamine pyrophosphokinase; structural genomics, P	100.0
3l8m_A	212	Probable thiamine pyrophosphokinase; thiamin dipho	100.0
3ihk_A	218	Thiamin pyrophosphokinase; structural genomics, PS	100.0
3mel_A	222	Thiamin pyrophosphokinase family protein; structur	100.0
3cq9_A	227	Uncharacterized protein LP_1622; Q88WK7_lacpl, tra	100.0
2g9z_A	348	Thiamine pyrophosphokinase; thiamin-PNP, TPK, thia	100.0
1ig0_A	319	Thiamin pyrophosphokinase; protein-substrate compl	100.0
2omk_A	231	Hypothetical protein; succinimide, thiamin pyropho	100.0
2pjk_A	178	178AA long hypothetical molybdenum cofactor biosyn	89.24
3pzy_A	164	MOG; ssgcid, seattle structural genomics center fo	89.15
1y5e_A	169	Molybdenum cofactor biosynthesis protein B; struct	89.11
1mkz_A	172	Molybdenum cofactor biosynthesis protein B; MAD, W	87.95
3iwt_A	178	178AA long hypothetical molybdenum cofactor biosy	87.62
2is8_A	164	Molybdopterin biosynthesis enzyme, MOAB; globular	87.48
3kbq_A	172	Protein TA0487; structural genomics, CINA, protein	85.5
3rfq_A	185	Pterin-4-alpha-carbinolamine dehydratase MOAB2; st	85.32
2g2c_A	167	Putative molybdenum cofactor biosynthesis protein;	85.24
1di6_A	195	MOGA, molybdenum cofactor biosynthetic enzyme; MOC	81.6

>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*

Probab=100.00  E-value=1e-52  Score=348.84  Aligned_cols=176  Identities=36%  Similarity=0.719  Sum_probs=157.1

Q ss_pred             CEEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhh-----
Q psy16241          1 KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKR-----   75 (186)
Q Consensus         1 ~~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~-----   75 (186)
                      +++|||||||++|+++.++   ++.++.||+|||||||++++++++|+++++++++.||||+||+||||+++.++     
T Consensus        44 ~~~i~aDgGa~~l~~~~~~---~~~~~~Pd~ivGD~DSi~~~~~~~~~~~~~~i~~~peKD~TD~ekAl~~~~~~~~~~~  120 (247)
T 3s4y_A           44 LLRACADGGANRLYDITEG---ERESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKD  120 (247)
T ss_dssp             SCEEEETTHHHHHHHHTTT---CGGGCCCSEEEECCSSSCHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEchHHHHHHHhccc---cccCCCccEEEcCCcCCCHHHHHHHHhcCCEEEECCCCCcCHHHHHHHHHHHhhhhcc
Confidence            4689999999999994210   12279999999999999999999999999999988999999999999999873     


Q ss_pred             cCCCEEEEEEcCCCchhHHHHHHHHHHhcC----CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCce
Q psy16241         76 EKIDYLISIVEFNGRLDHCMSNINTLYKSS----LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPV  151 (186)
Q Consensus        76 ~~~~~i~v~G~~GgR~DH~l~ni~~l~~~~----~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~  151 (186)
                      .++++|+++||+|||+||+|+||++|+++.    .+++|+++++.+++++  +|.|++..+.+.  .+++|||||+++++
T Consensus       121 ~~~~~I~ilGa~GGR~DH~Lani~lL~~~~~~~~~~i~lid~~n~i~ll~--~G~~~i~~~~~~--~g~~vSlipl~~~~  196 (247)
T 3s4y_A          121 LKVDVIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLLQ--PGKHRLHVDTGM--EGDWCGLIPVGQPC  196 (247)
T ss_dssp             CCCSEEEEECCSSSSHHHHHHHHHHHHHGGGTCSSCEEEEETTEEEEEEC--SEEEEEEC---C--EEEEEEEECCSSCE
T ss_pred             CCCCEEEEEecCCCchhHHHHHHHHHHHHhhccCceEEEEeCCeEEEEEc--CCCEEEEEcCCC--CCCEEEEEECCCce
Confidence            279999999999999999999999999873    7899999999999999  899999876544  57999999999988


Q ss_pred             eeeEEecceEecCCcccccCCcceeeeeEecC
Q psy16241        152 QQVYSTGLKWNLNNHTLAFGGMVSSSNTYENE  183 (186)
Q Consensus       152 ~~vt~~Glky~L~~~~l~~~~~~~~SNe~~~~  183 (186)
                      ++||++||||||+++++.++..+|+|||+.++
T Consensus       197 ~~lt~~Glky~L~~~~l~~g~~~~~SNe~~~~  228 (247)
T 3s4y_A          197 MQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGS  228 (247)
T ss_dssp             EEEEEESBSSCCSSEEEBTTTBCEEEECBCSC
T ss_pred             eEEEEeccEEECCCCeecCCCceEEeeEEeCC
Confidence            89999999999999999999999999999875

>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}

Probab=100.00  E-value=3e-52  Score=341.43  Aligned_cols=166  Identities=24%  Similarity=0.291  Sum_probs=156.1

Q ss_pred             EEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCCE
Q psy16241          2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKIDY   80 (186)
Q Consensus         2 ~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~~   80 (186)
                      ++|||||||++|+++         |+.||+|||||||++++++++|++++++++++| |||+||+||||+++.+ +++++
T Consensus        26 ~~i~~Dgga~~l~~~---------g~~Pd~ivGD~DSi~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~-~g~~~   95 (223)
T 3k94_A           26 CWVGVDRGTMTLLEA---------GFRPVRAFGDFDSLPAEDVVKLQQAFPDLDVWPAEKDKTDMEIALDWAVE-QTARC   95 (223)
T ss_dssp             EEEEETTHHHHHHHH---------TCCCSEEESCGGGSCHHHHHHHHHHCTTCCEECCBTTBCHHHHHHHHHHT-TCCSE
T ss_pred             EEEEECHHHHHHHHc---------CCCCCEEEeCcccCCHHHHHHHHhcCCeEEECCCcCCCCHHHHHHHHHHH-cCCCE
Confidence            789999999999999         899999999999999999999999999999976 9999999999999998 69999


Q ss_pred             EEEEEcCCCchhHHHHHHHHHHhcC-CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCceeeeEEecc
Q psy16241         81 LISIVEFNGRLDHCMSNINTLYKSS-LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGL  159 (186)
Q Consensus        81 i~v~G~~GgR~DH~l~ni~~l~~~~-~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~vt~~Gl  159 (186)
                      |+++||+|||+||+|+||++|++.. .+++|+++++++++++  +|.+++...+    .+++|||||++++++++|++||
T Consensus        96 I~i~Ga~GGR~DH~lani~lL~~~~~~~i~lid~~~~i~~l~--~g~~~i~~~~----~~~~vSlipl~~~~~~lt~~Gl  169 (223)
T 3k94_A           96 IRLFGATGGRLDHLFGNVELLLKYADRPIEIVDRQNVLTVHL--PGTYTVMYDA----RYCYVSYIPVSETVAEFTLTGF  169 (223)
T ss_dssp             EEEESCSSSSHHHHHHHHHHHHHTTTSCEEEEETTEEEEEEC--SEEEEEECCT----TCCEEEEEECSSEEEEEEEESB
T ss_pred             EEEEcCCCCchhHHHHHHHHHHhccCCeEEEEcCCeEEEEEe--CCcEEEEECC----CCCEEEEEECCCceeEEEEecc
Confidence            9999999999999999999999844 8999999999999998  8999887543    3699999999988888999999


Q ss_pred             eEecCCcccccCCcceeeeeEecC
Q psy16241        160 KWNLNNHTLAFGGMVSSSNTYENE  183 (186)
Q Consensus       160 ky~L~~~~l~~~~~~~~SNe~~~~  183 (186)
                      ||||+++++.++.++|+|||+.++
T Consensus       170 ky~L~~~~l~~~~~~~~SNe~~~~  193 (223)
T 3k94_A          170 KYPLTNCHISRGSTLCISNELIQS  193 (223)
T ss_dssp             SSCCCSEEEETTTSCCBCCCBCSS
T ss_pred             EEECCCCeecCCCceEEeeEEECC
Confidence            999999999999999999999876

>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=2e-52  Score=342.37  Aligned_cols=166  Identities=25%  Similarity=0.328  Sum_probs=155.8

Q ss_pred             EEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCCE
Q psy16241          2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKIDY   80 (186)
Q Consensus         2 ~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~~   80 (186)
                      ++|||||||++|+++         |+.||+|||||||++++++++|++++++++++| +||+||+|+||++|.+ +++++
T Consensus        27 ~~i~~DgGa~~l~~~---------g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~-~g~~~   96 (222)
T 3lm8_A           27 LWIGVDKGTVTLLDA---------GIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALE-KQPDI   96 (222)
T ss_dssp             EEEEETHHHHHHHHH---------TCCCSEEESCSTTSCHHHHHHHHHHCTTCEEECCCSSSCHHHHHHHHHHH-HCCSE
T ss_pred             EEEEECHHHHHHHHc---------CCCCcEEEeCcccCCHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHH-cCCCE
Confidence            789999999999999         899999999999999999999999999999986 9999999999999998 69999


Q ss_pred             EEEEEcCCCchhHHHHHHHHHHhcC---CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCceeeeEEe
Q psy16241         81 LISIVEFNGRLDHCMSNINTLYKSS---LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYST  157 (186)
Q Consensus        81 i~v~G~~GgR~DH~l~ni~~l~~~~---~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~vt~~  157 (186)
                      |+++||+|||+||+|+|+++|+++.   .+++|+|+++++++++  +|.+++...+    .+++|||||++++++++|++
T Consensus        97 I~i~Ga~GgR~DH~lani~ll~~~~~~~~~i~lid~~~~i~~l~--~g~~~i~~~~----~~~~vSlipl~~~~~~lt~~  170 (222)
T 3lm8_A           97 IQIFGITGGRADHFLGNIQLLYKGVKTNIKIRLIDKQNHIQMFP--PGEYDIEKDE----NKRYISFIPFSEDIHELTLT  170 (222)
T ss_dssp             EEEESCCCSCHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEC--SEEEEEECCS----SCCEEEEEECSSCEEEEEEE
T ss_pred             EEEEcCCCCchhHHHHHHHHHHHHHhcCCcEEEEeCCeEEEEEc--CCcEEEEECC----CCCEEEEEECCCceeeEEEe
Confidence            9999999999999999999999852   7899999999999998  8999887543    36999999999888899999


Q ss_pred             cceEecCCcccccCCcceeeeeEecC
Q psy16241        158 GLKWNLNNHTLAFGGMVSSSNTYENE  183 (186)
Q Consensus       158 Glky~L~~~~l~~~~~~~~SNe~~~~  183 (186)
                      ||||||+++++.++.++|+|||+.++
T Consensus       171 Glky~L~~~~l~~~~~~~~SNe~~~~  196 (222)
T 3lm8_A          171 GFKYPLNNCHITLGSTLCISNELIHS  196 (222)
T ss_dssp             SBSSCEEEEEECTTCCTTSSBCBSSS
T ss_pred             CcEEECCCCeecCCCeeEEeeEEECC
Confidence            99999999999999999999999876

>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}

Probab=100.00  E-value=2.8e-52  Score=339.35  Aligned_cols=166  Identities=25%  Similarity=0.314  Sum_probs=139.4

Q ss_pred             CEEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCC
Q psy16241          1 KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKID   79 (186)
Q Consensus         1 ~~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~   79 (186)
                      .++|||||||++|+++         |+.||+|||||||++++++++|++++ +++++| +||+||+||||+++.+ ++++
T Consensus        23 ~~~i~~DgGa~~l~~~---------g~~Pd~ivGD~DSi~~~~~~~~~~~~-~i~~~p~eKD~TD~e~Al~~a~~-~~~~   91 (212)
T 3l8m_A           23 EHWIGIDRGTLILLES---------GITPQFAVGDFDSISDSERNFIQQQI-EINPYNSEKDDTDLALGIDQAVK-RGYR   91 (212)
T ss_dssp             SEEEEETHHHHHHHHT---------TCCCSEEESCCCCSCHHHHHHHHHHT-BCCCCC---CBCHHHHHHHHHHH-TTCC
T ss_pred             CEEEEECHHHHHHHHC---------CCCccEEEeCcccCCHHHHHHHhcCC-cEEEECCcCCCCHHHHHHHHHHH-CCCC
Confidence            4799999999999999         89999999999999999999999998 888887 9999999999999998 7999


Q ss_pred             EEEEEEcCCCchhHHHHHHHHHHhc---C--CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCceeee
Q psy16241         80 YLISIVEFNGRLDHCMSNINTLYKS---S--LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQV  154 (186)
Q Consensus        80 ~i~v~G~~GgR~DH~l~ni~~l~~~---~--~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~v  154 (186)
                      +|+++||+|||+||+|+|+++|+++   .  .+++|+++++++++++  +|.|++..+.+    +++|||||++++++ +
T Consensus        92 ~I~i~Ga~GgR~DH~lani~ll~~~~~~~~~~~i~lid~~~~i~~l~--~g~~~i~~~~~----~~~vSl~pl~~~~~-l  164 (212)
T 3l8m_A           92 NIDVYGATGGRLDHFMGALQILEKPEYAKMNINIKLIDDTNEIQFIQ--KGQFNVTYSEQ----FPYISFIPVIYPTV-I  164 (212)
T ss_dssp             EEEEESCSSSCHHHHHHHHHHHTCHHHHTTTCEEEEECSSEEEEEEC--SEEECC---------CCEEEEEECC-CEE-E
T ss_pred             EEEEEcCCCCchhHHHHHHHHHHhhhhhccCceEEEEeCCeEEEEEC--CCCEEEEeCCC----CcEEEEEECCCCeE-E
Confidence            9999999999999999999999874   2  7899999999999998  89988865532    38999999999887 9


Q ss_pred             EEecceEecCCcccccCCcceeeeeEecCC
Q psy16241        155 YSTGLKWNLNNHTLAFGGMVSSSNTYENET  184 (186)
Q Consensus       155 t~~Glky~L~~~~l~~~~~~~~SNe~~~~~  184 (186)
                      |++||||||+++++.++.++|+|||+.+++
T Consensus       165 t~~Glky~L~~~~l~~~~~~~~SNe~~~~~  194 (212)
T 3l8m_A          165 SLKGFKYNLQNETLKLGSTLTISNELSQSC  194 (212)
T ss_dssp             ESSSSCCSSEEC-------CCTTBCC---C
T ss_pred             EEeccEEECCCCeecCCCeeEEeeEEECCe
Confidence            999999999999999999999999998764

>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}

Probab=100.00  E-value=9.9e-51  Score=331.47  Aligned_cols=166  Identities=22%  Similarity=0.253  Sum_probs=150.1

Q ss_pred             CEEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeC-CCCCccHHHHHHHHHHhhcCCC
Q psy16241          1 KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPT-PDQSYTDFQKAVMEITKREKID   79 (186)
Q Consensus         1 ~~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~-pdkD~TD~e~Al~~~~~~~~~~   79 (186)
                      .++|||||||++|+++         |+.||+|||||||++++++++|++++++++++ ||||+||+||||+++.++.+++
T Consensus        20 ~~~i~~DgGa~~l~~~---------g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~~~eKD~TD~e~Al~~a~~~~~~~   90 (218)
T 3ihk_A           20 DYFVGIDKGSSFLLKN---------QLPLDLAIGDFDSVSAEEFKQIKAKAKKLVMAPAEKNDTDTELALKTIFDCFGRV   90 (218)
T ss_dssp             SEEEEETHHHHHHHHT---------TCCCSEEEECCTTSCHHHHHHHHTTCSSEEECCSSCSSCHHHHHHHHHHHHTSSC
T ss_pred             CEEEEEcHHHHHHHHc---------CCCCCEEEeCcccCCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHHHhCCCC
Confidence            4799999999999999         89999999999999999999999999999986 5999999999999999854899


Q ss_pred             EEEEEEcCCCchhHHHHHHHHHHhcC-----CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCceeee
Q psy16241         80 YLISIVEFNGRLDHCMSNINTLYKSS-----LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQV  154 (186)
Q Consensus        80 ~i~v~G~~GgR~DH~l~ni~~l~~~~-----~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~v  154 (186)
                      +|+++||+|||+||+|+||++|+++.     .+++|++++|.++++.  +|++++..+++    .++|||||+++  ++|
T Consensus        91 ~I~i~Ga~GGR~DH~lani~lL~~~~~~~~~~~i~lid~~n~i~~l~--~g~~~i~~~~~----~~~vSlipl~~--~~l  162 (218)
T 3ihk_A           91 EIIVFGAFGGRIDHMLSNIFLPSDPDLAPFMRCFKLRDEQNLVEFFP--AGQHQIEQATD----MVYISFMAANG--AHL  162 (218)
T ss_dssp             EEEEESCSSSCHHHHHHHHTGGGSTTTGGGTTSEEEEETTEEEEEEE--EEEEEECCCSS----CCEEEEEESSC--CCE
T ss_pred             EEEEECCCCCchhhHHHHHHHHHhhhhhccCceEEEEcCCcEEEEEc--CCCEEEEecCC----CcEEEEEEccC--CcE
Confidence            99999999999999999999998752     6899999999999998  79998876532    36999999997  589


Q ss_pred             EEecceEecCCcccccCCcceeeeeEecCC
Q psy16241        155 YSTGLKWNLNNHTLAFGGMVSSSNTYENET  184 (186)
Q Consensus       155 t~~Glky~L~~~~l~~~~~~~~SNe~~~~~  184 (186)
                      |++||||||+++++..+ ..++|||+.+++
T Consensus       163 t~~Glky~L~~~~l~~~-~~~~SNe~~~~~  191 (218)
T 3ihk_A          163 SIQDAKYELTEENYFQK-KIYSSNEFKDKP  191 (218)
T ss_dssp             EEESSSSCBCTTTCCCC-SEEEEECCCSSC
T ss_pred             EEeccEEECCCccccCC-CCcEeeEEECCe
Confidence            99999999999999654 678999998753

>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}

Probab=100.00  E-value=5.3e-51  Score=333.89  Aligned_cols=165  Identities=22%  Similarity=0.235  Sum_probs=151.6

Q ss_pred             CEEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCC
Q psy16241          1 KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKID   79 (186)
Q Consensus         1 ~~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~   79 (186)
                      +++|||||||++|+++         |+.||+|||||||++++++++|+++|++++++| +||+||+|+||++|.+ ++++
T Consensus        24 ~~~I~aDgGa~~l~~~---------g~~Pd~ivGDfDSi~~~~~~~~~~~~~~~~~~~~eKD~TD~e~Al~~~~~-~~~~   93 (222)
T 3mel_A           24 DYFVGIDRGCLHLLEA---------DLPLQLAVGDFDSLSREEYHFVQETTETLIQAPAEKDDTDTQLALQEALQ-RFPQ   93 (222)
T ss_dssp             SCEEEETTHHHHHHTT---------TCCCCEEEECCTTSCTTHHHHHHHHCSSEEECCSSCSSCHHHHHHHHHHH-HCTT
T ss_pred             CEEEEEcHHHHHHHHC---------CCCCCEEEeCcccCCHHHHHHHHhcCCcEEECCccCCCCHHHHHHHHHHH-hCCC
Confidence            3689999999999999         899999999999999999999999999999865 9999999999999998 5886


Q ss_pred             -EEEEEEcCCCchhHHHHHHHHHHh--cC---CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCceee
Q psy16241         80 -YLISIVEFNGRLDHCMSNINTLYK--SS---LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQ  153 (186)
Q Consensus        80 -~i~v~G~~GgR~DH~l~ni~~l~~--~~---~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~  153 (186)
                       +|+++||+|||+||+|+|+++|++  +.   .+++|++++|+++++.  +|++++..+++    +++|||||++ ++++
T Consensus        94 ~~I~i~Ga~GgRlDH~lani~lL~~~~~~~~~~~i~lid~~n~i~~l~--~g~~~i~~~~~----~~~vSlipl~-~~~~  166 (222)
T 3mel_A           94 AEMTIIGATGGRIDHLLANLWLPFEPRFQGVLRQIRLCDRQNSIQYYA--PGSYIVPKEPD----KEYLAYCCLT-PVEN  166 (222)
T ss_dssp             SEEEEECCCSSCHHHHHHHHTGGGSHHHHTTGGGEEEECSSEEEEEEC--SSEEEEECCTT----CCEEEEEESS-CEEE
T ss_pred             ceEEEEccCCCCHHHHHHHHHHHHhhHHhccCceEEEEeCCcEEEEEe--CCcEEEEecCC----CcEEEEEECc-ccce
Confidence             999999999999999999999987  32   7899999999999999  89999886532    4799999999 6778


Q ss_pred             eEEecceEecCCcccccCCcceeeeeEecC
Q psy16241        154 VYSTGLKWNLNNHTLAFGGMVSSSNTYENE  183 (186)
Q Consensus       154 vt~~Glky~L~~~~l~~~~~~~~SNe~~~~  183 (186)
                      ||++||||||+++++.++.+++ |||+.++
T Consensus       167 lt~~Glky~L~~~~l~~g~~~~-SNe~~~~  195 (222)
T 3mel_A          167 LTLRRSKYLLTNQDVPYPTSYA-SNEFIEE  195 (222)
T ss_dssp             EEEESBSSCEEEEEECSCEEEE-EECBSSS
T ss_pred             EEEeccEEECCCCeeeCCCCCE-eEEEECC
Confidence            9999999999999999998888 9999875

>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase, thiamine pyrophosphokinase, NESG, LPR114, structural genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1}

Probab=100.00  E-value=1.1e-50  Score=333.06  Aligned_cols=163  Identities=22%  Similarity=0.249  Sum_probs=141.9

Q ss_pred             EEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeC-CCCCccHHHHHHHHHHhhcCCC-
Q psy16241          2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPT-PDQSYTDFQKAVMEITKREKID-   79 (186)
Q Consensus         2 ~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~-pdkD~TD~e~Al~~~~~~~~~~-   79 (186)
                      ++|||||||++|+++         |+.||+|||||||++++++++|++++++++++ |+||+||+|+||++|.+ +++. 
T Consensus        26 ~~I~aDgGa~~l~~~---------g~~Pd~ivGDfDSi~~e~~~~~~~~~~~~~~~~~~KD~TD~e~Al~~a~~-~~~~~   95 (227)
T 3cq9_A           26 PWVGADRGALRLVKR---------GIQPVMVVGDFDSIDAAELQTVKDALVGAIVVKPDQDHTDTQLAIKSIFE-QLQPD   95 (227)
T ss_dssp             CEEEETHHHHHHHHT---------TCCCSEEESCC---------CHHHHHHTSEEECCCSSSCHHHHHHHHHHH-HTCCS
T ss_pred             EEEEEcHHHHHHHHc---------CCCCCEEEeCCcCCCHHHHHHHHhcCceEEECCCCCCCCHHHHHHHHHHH-hCCCc
Confidence            689999999999999         89999999999999999999999999888875 59999999999999998 5777 


Q ss_pred             EEEEEEcCCCchhHHHHHHHHHHhcC---C--CEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCceeee
Q psy16241         80 YLISIVEFNGRLDHCMSNINTLYKSS---L--PIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQV  154 (186)
Q Consensus        80 ~i~v~G~~GgR~DH~l~ni~~l~~~~---~--~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~v  154 (186)
                      +|+++|++|||+||+|+||++|+++.   .  +++|++++|.++++.  +|++++..++    .+++|||||+++ + ++
T Consensus        96 ~I~i~Ga~GgR~DH~laNi~lL~~~~~~~~~~~i~lid~~n~i~~l~--~g~~~i~~~~----~~~~vSlipl~~-v-~l  167 (227)
T 3cq9_A           96 EVHLYGATGGRLDHLLANMWLVLDPVFRQWAPQIKLIDKQNSVRFFL--PGDYQITKEA----DKRYLAFVPLMP-M-HL  167 (227)
T ss_dssp             EEEEESCSSSCHHHHHHHHSGGGSHHHHTTGGGEEEECSSEEEEEEC--SEEEEEECCT----TCCEEEEEESSC-E-EE
T ss_pred             eEEEEcCCCCchhHHHHHHHHHHHHHhcCCCceEEEEeCCcEEEEEc--CCCEEEeeCC----CCCEEEEEECCC-C-eE
Confidence            99999999999999999999998764   4  899999999999999  8999988653    258999999998 7 89


Q ss_pred             EEecceEecCCcccccCCcceeeeeEecC
Q psy16241        155 YSTGLKWNLNNHTLAFGGMVSSSNTYENE  183 (186)
Q Consensus       155 t~~Glky~L~~~~l~~~~~~~~SNe~~~~  183 (186)
                      |++||||||+++++.++.+++ |||+.++
T Consensus       168 t~~Glky~L~~~~l~~g~~~~-SNe~~~~  195 (227)
T 3cq9_A          168 TLPDEKYQLDAAYNAYPISWA-SNEFSGN  195 (227)
T ss_dssp             EESSBSSCEEEEEESSCCCEE-EECBSSS
T ss_pred             EEeccEEECCCceeeCCCceE-ceeEECC
Confidence            999999999999999999999 9999875

>2g9z_A Thiamine pyrophosphokinase; thiamin-PNP, TPK, thiamin pyrophosphokinase, structural GENO profun, bacterial targets at IGS-CNRS, france, BIGS; HET: VNP; 1.96A {Candida albicans} PDB: 2hh9_A*

Probab=100.00  E-value=3e-49  Score=341.61  Aligned_cols=182  Identities=28%  Similarity=0.467  Sum_probs=157.4

Q ss_pred             CEEEEEchhHHHHHHhhhcCC-------CCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHH
Q psy16241          1 KIRCTVDQGTDRWLLFLNQHN-------LDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEIT   73 (186)
Q Consensus         1 ~~~IaaDgGa~~l~~~~~~~~-------~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~   73 (186)
                      .++||||||||+|+++..++.       ..+.++.||+|||||||++++++++|+++|+.++..|+||+||++|||+++.
T Consensus        85 ~~~I~aDGGAn~L~~~~~~~~~~~~~~~g~~~~~~Pd~IvGDfDSi~~e~~~~y~~~g~~i~~~~dQD~TD~ekAL~~~~  164 (348)
T 2g9z_A           85 EIIVCADGGANSLYEYFNDNNHHHHHENLQRSDYIPDYIVGDFDSISPDVKTYYESHGSKIIRQSSQYYNDFTKSIHCIQ  164 (348)
T ss_dssp             SEEEEETTHHHHHHHHTC----------CCGGGCCCSEEEECCSSSCHHHHHHHHTTTCEEEECCCSSSCHHHHHHHHHH
T ss_pred             CEEEEEccHHHHHHHhhhhhccccccccCCcccccccEEEccCcCCCHHHHHHHHhcCceEEcCCCcCcCHHHHHHHHHH
Confidence            379999999999999843211       1233499999999999999999999999999887789999999999999998


Q ss_pred             hhc-----------------------------------CCCEEEEEEcCCCchhHHHHHHHHHHhcC-----CCEEEEcC
Q psy16241         74 KRE-----------------------------------KIDYLISIVEFNGRLDHCMSNINTLYKSS-----LPIYLLSA  113 (186)
Q Consensus        74 ~~~-----------------------------------~~~~i~v~G~~GgR~DH~l~ni~~l~~~~-----~~i~l~~~  113 (186)
                      ++.                                   ++.+|+++||+|||+||+|+||++|+++.     .+++|+++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~I~ilGalGGR~DHtlanI~~L~~~~~~~~~~~i~lid~  244 (348)
T 2g9z_A          165 LHYQLNHTKENWFESIDEVDGLAKLWNGLNNSSDVVVDIDITIYVLNAIGGRFDQTVQSINQLYIMNEDYPKVTVFFITT  244 (348)
T ss_dssp             HHHHHTTTCTTTTTTSCTTTHHHHHHHHHHHTTCCCCCCCEEEEEESSSSSSHHHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred             HhccccccccccccccccccccccccccccccccccccCCcEEEEEecCCCchhHHHHHHHHHHHhhhhcCCceEEEEcC
Confidence            841                                   37799999999999999999999999752     68999999


Q ss_pred             CeEEEEEecCCCeEEEEeCCC-CC-C-----CCCEEEEEecCCce-eeeEEecceEecCCcccccCCcceeeeeEecCC
Q psy16241        114 KYMSWVLRANAGLHRIHLNPG-FT-S-----GKKTLGLIPVGSPV-QQVYSTGLKWNLNNHTLAFGGMVSSSNTYENET  184 (186)
Q Consensus       114 ~~~i~~l~~~~g~~~i~~~~~-~~-~-----~~~~~Sl~pl~~~~-~~vt~~Glky~L~~~~l~~~~~~~~SNe~~~~~  184 (186)
                      ++++|+++  +|.+.+..+.. .. +     .+++|||||+++++ ..||++||||||+++.+.+++.+|+||++.+++
T Consensus       245 ~n~i~ll~--~G~~~i~~~~~~~~~~~~~~~~g~~~SLiPl~~~~~~~ltt~GLKy~L~~~~l~~g~~vstSNe~~~~~  321 (348)
T 2g9z_A          245 NDIIFLLK--KGVNYISYKNRLMFHKDNGSSPTPTCGLLPLSNKTPIILNSYGLKYDMRNWKTEMLGQVSSSNRISGET  321 (348)
T ss_dssp             SEEEEEEC--SEEEEEECSCGGGTBCCCSSCCSCEEEEECCSSSCCEEEEEESBSEEEESEEECTTSCCEEEEEBCBSS
T ss_pred             CeEEEEEC--CCceEEecccccccccccccCCCCEEEEEEcCCCccceEEEeCcEEECCCceecCCCceeEeeEEeCCc
Confidence            99999999  89999987642 10 0     17999999999887 789999999999999999999999999998865

>1ig0_A Thiamin pyrophosphokinase; protein-substrate complex, compound active site, alpha-beta- alpha, beta sandwich, transferase; HET: VIB; 1.80A {Saccharomyces cerevisiae} SCOP: b.82.6.1 c.100.1.1

Probab=100.00  E-value=1.4e-48  Score=334.52  Aligned_cols=182  Identities=24%  Similarity=0.416  Sum_probs=154.9

Q ss_pred             CEEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhh-----
Q psy16241          1 KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKR-----   75 (186)
Q Consensus         1 ~~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~-----   75 (186)
                      .++|||||||++|+++...+...+..+.||+|||||||++++++++|+++|+.+++.|+||+||++|||+++.++     
T Consensus        63 ~~~I~aDGGa~~l~~~~~~~g~~~~~~~Pd~IvGDfDSi~~e~~~~y~~~g~~i~~~~dqD~TD~ekAl~~i~~~~~~~~  142 (319)
T 1ig0_A           63 DLKVCADGAANRLYDYLDDDETLRIKYLPNYIIGDLDSLSEKVYKYYRKNKVTIIKQTTQYSTDFTKCVNLISLHFNSPE  142 (319)
T ss_dssp             SEEEEETTHHHHHHHHSCSCHHHHTTSCCSEEEECCTTSCHHHHHHHHHTTCEEEECCCSSSCHHHHHHHHHHHHHHCHH
T ss_pred             CEEEEEccHHHHHHHhhhcccccccccccCEEEcCCcCCCHHHHHHHHhcCceEEeCCCCCCChHHHHHHHHHHhccccc
Confidence            379999999999999831100001129999999999999999999999999988888999999999999888531     


Q ss_pred             --------------------------------------cCCCEEEEEEcCCCchhHHHHHHHHHHhcC-----CCEEEEc
Q psy16241         76 --------------------------------------EKIDYLISIVEFNGRLDHCMSNINTLYKSS-----LPIYLLS  112 (186)
Q Consensus        76 --------------------------------------~~~~~i~v~G~~GgR~DH~l~ni~~l~~~~-----~~i~l~~  112 (186)
                                                            .+..+|+++||+|||+||+|+||++|+++.     .+++|++
T Consensus       143 ~~~~~~~~~~tds~~~~~~e~~~~~a~~~~~~~~~~~~~~~~~I~ilGalGGR~DH~lanI~~L~~~~~~~~~~~i~lid  222 (319)
T 1ig0_A          143 FRSLISNKDNLQSNHGIELEKGIHTLYNTMTESLVFSKVTPISLLALGGIGGRFDQTVHSITQLYTLSENASYFKLCYMT  222 (319)
T ss_dssp             HHHHHTCSSCTTTGGGCCTTTHHHHHHHHHHTTCCGGGSCCEEEEEESSSSSSHHHHHHHHHHHHHHHHHCTTEEEEEEC
T ss_pred             ccccccccccccccccccchhhhhhhhhccccccccccCCCcEEEEEecCCCchhHHHHHHHHHHHhhhhcCCceEEEEc
Confidence                                                  367899999999999999999999999852     6899999


Q ss_pred             CCeEEEEEecCCCeEEEEeCCCCCC-CCCEEEEEecCCceeeeEEecceEecCCccccc-CCcceeeeeEecCC
Q psy16241        113 AKYMSWVLRANAGLHRIHLNPGFTS-GKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAF-GGMVSSSNTYENET  184 (186)
Q Consensus       113 ~~~~i~~l~~~~g~~~i~~~~~~~~-~~~~~Sl~pl~~~~~~vt~~Glky~L~~~~l~~-~~~~~~SNe~~~~~  184 (186)
                      +++++++++  +|.|.+..+..... .+++|||||+++++.++|++||||||+++.+.+ ++.+|+||++.+++
T Consensus       223 ~~n~i~ll~--~G~~~i~~~~~~~~~~g~~~SliPl~~~~~~ltt~GlKy~L~~~~l~~~g~~~stSNe~~~~~  294 (319)
T 1ig0_A          223 PTDLIFLIK--KNGTLIEYDPQFRNTCIGNCGLLPIGEATLVKETRGLKWDVKNWPTSVVTGRVSSSNRFVGDN  294 (319)
T ss_dssp             SSEEEEEEC--SSCEEEECCHHHHHHHEEEEEEECTTSCEEEEEEESBSEEEEEEEEBTTTTBCEEEEEBCBSS
T ss_pred             CCEEEEEEC--CCcEEEecccccccCCCCEEEEEECCCCcceEEEeCcEEECCCceeccCCCcceEeeEEeCCc
Confidence            999999999  89999986321000 268999999998888999999999999999999 88899999998865

>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-46  Score=309.81  Aligned_cols=156  Identities=19%  Similarity=0.201  Sum_probs=136.5

Q ss_pred             EEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEE
Q psy16241          2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYL   81 (186)
Q Consensus         2 ~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i   81 (186)
                      ++|||||||++|+++         |+.||+|||||||++++++++|++  + +...|+||+||+|+|+.+|.+ +|+++|
T Consensus        57 ~iI~aDgGa~~L~~~---------gi~Pd~ivGDfDSi~~e~~~~~~~--~-i~~~~~kD~TD~e~Al~~a~~-~g~~~I  123 (231)
T 2omk_A           57 FVVCCXXAANEYISR---------GHTPDVIIGDGDSLLPEYKKRFSS--I-ILQISDQETNDQTKAVHYLQS-KGIRKI  123 (231)
T ss_dssp             CEEEC--CHHHHHHT---------TCCCSEEESCGGGSCHHHHHHHGG--G-EECCCSSCCCHHHHHHHHHHH-TTCCEE
T ss_pred             EEEEEhHHHHHHHHc---------CCCCCEEEeCCcCCCHHHHHhcCC--E-EEeCCCCCCCHHHHHHHHHHH-cCCCEE
Confidence            689999999999999         899999999999999999999984  2 333459999999999999998 799999


Q ss_pred             EEEEcCCCchhHHHHHHHHHHhcC---CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCceeeeEEec
Q psy16241         82 ISIVEFNGRLDHCMSNINTLYKSS---LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTG  158 (186)
Q Consensus        82 ~v~G~~GgR~DH~l~ni~~l~~~~---~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~vt~~G  158 (186)
                      +++|++|||+||+|+||++|+++.   .+++++++++++++++   |.+++...     .+++|||||++  ++++|++|
T Consensus       124 ~i~Ga~GgRlDH~laNi~lL~~~~~~~~~i~lid~~~~~~l~~---g~~~i~~~-----~g~~vSlipl~--~~~lt~~G  193 (231)
T 2omk_A          124 AIVGATGKREDHTLGNISLLVEYMRSGMEVRTVTDYGTFIPVS---DTQSFASY-----PGQQVSIINFG--AKGLKAEG  193 (231)
T ss_dssp             EEESCSSSCHHHHHHHHHHHHHHHHTTCEEEEECSSEEEEEEE---SSEEEECC-----TTCEEEEEEEE--EEEEEEES
T ss_pred             EEECccCCchhHHHHHHHHHHHHHhcCCeEEEEeCCEEEEEeC---CCEEEecC-----CCCEEEEEEcc--cCcEEEeC
Confidence            999999999999999999999876   6899999999977764   77888644     57999999999  46899999


Q ss_pred             ceEecCCcccccCCcceeeeeEecC
Q psy16241        159 LKWNLNNHTLAFGGMVSSSNTYENE  183 (186)
Q Consensus       159 lky~L~~~~l~~~~~~~~SNe~~~~  183 (186)
                      |||||++..   +..+++|||+.++
T Consensus       194 lky~L~~~~---~~~~~~SNe~~~~  215 (231)
T 2omk_A          194 LFYPLSDFT---NWWQGTLNEAIAD  215 (231)
T ss_dssp             BSSCCCCCS---SGGGGTTEEBCSS
T ss_pred             cEEECCCCC---CCceEECeEEECC
Confidence            999999844   4578999999875

>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A

Probab=89.15  E-value=0.67  Score=35.08  Aligned_cols=61  Identities=10%  Similarity=0.069  Sum_probs=47.5

Q ss_pred             CCCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHH
Q psy16241         36 FDSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNIN   99 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~   99 (186)
                      .||-++-..+.+++.|.++..+   || | -++..||+.+.+ .+++-|++.|++| |.-|++--.+.
T Consensus        25 ~Dsn~~~l~~~l~~~G~~v~~~~iv~D-d-~~i~~al~~a~~-~~~DlVittGG~s~g~~D~t~eal~   89 (164)
T 3pzy_A           25 EDRCGPIITEWLAQQGFSSAQPEVVAD-G-SPVGEALRKAID-DDVDVILTSGGTGIAPTDSTPDQTV   89 (164)
T ss_dssp             -CCHHHHHHHHHHHTTCEECCCEEECS-S-HHHHHHHHHHHH-TTCSEEEEESCCSSSTTCCHHHHHH
T ss_pred             eeHHHHHHHHHHHHCCCEEEEEEEeCC-H-HHHHHHHHHHHh-CCCCEEEECCCCCCCCCccHHHHHH
Confidence            5887777778899999877654   44 4 778889998875 4799999999999 79999865544

>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1

Probab=89.11  E-value=0.51  Score=35.77  Aligned_cols=67  Identities=15%  Similarity=0.177  Sum_probs=50.1

Q ss_pred             EEEcc-----CCCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHH
Q psy16241         31 LVTGD-----FDSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNI   98 (186)
Q Consensus        31 ~iiGD-----fDSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni   98 (186)
                      +.+||     .||-++-..+.+++.|..+...   || |.-++..||+.+.+...++-|++.|++| |+-|++-..+
T Consensus        19 i~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~D-d~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~   94 (169)
T 1y5e_A           19 VTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKD-DKESIQQAVLAGYHKEDVDVVLTNGGTGITKRDVTIEAV   94 (169)
T ss_dssp             EEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECS-SHHHHHHHHHHHHTCTTCSEEEEECCCSSSTTCCHHHHH
T ss_pred             EEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCC-CHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCCcHHHH
Confidence            45677     5666666678888899877653   44 6778899999887522689999999999 7889875444

>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B

Probab=87.95  E-value=0.44  Score=36.30  Aligned_cols=67  Identities=9%  Similarity=0.071  Sum_probs=49.6

Q ss_pred             EEEcc-----CCCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHH
Q psy16241         31 LVTGD-----FDSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNI   98 (186)
Q Consensus        31 ~iiGD-----fDSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni   98 (186)
                      +.+||     .||-++-..+.+++.|..+...   || |.-++..||+.+.++.+++-|++.|++| |.-|++-..+
T Consensus        16 i~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~D-d~~~i~~~l~~a~~~~~~DlVittGG~g~~~~D~t~ea~   91 (172)
T 1mkz_A           16 LTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKE-NRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEAL   91 (172)
T ss_dssp             EEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECS-CHHHHHHHHHHHHHSSSCCEEEEESCCSSSTTCCHHHHH
T ss_pred             EEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCC-CHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCCCHHHHH
Confidence            45576     4665566668888899877653   44 6778889999988722699999999999 7888875433

>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}

Probab=87.62  E-value=0.45  Score=36.14  Aligned_cols=62  Identities=19%  Similarity=0.222  Sum_probs=45.9

Q ss_pred             CCCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHH
Q psy16241         36 FDSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNI   98 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni   98 (186)
                      .|+-.+-..+.+++.|.++..+   || |.-.+..|+..+.....++-|+..|++| |.-|++--.+
T Consensus        38 ~D~ng~~L~~~L~~~G~~v~~~~iV~D-d~~~i~~al~~~~a~~~~DlVittGG~g~~~~D~t~ea~  103 (178)
T 3iwt_A           38 VDESGDIIKQLLIENGHKIIGYSLVPD-DKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVETI  103 (178)
T ss_dssp             CCHHHHHHHHHHHHTTCEEEEEEEECS-CHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHHHH
T ss_pred             CcchHHHHHHHHHHCCCEEEEEEEeCC-CHHHHHHHHHHHHhcCCCCEEEecCCcccCCCCchHHHH
Confidence            4665666678899999888764   44 5567888888766435689999999999 7888775443

>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A

Probab=87.48  E-value=0.7  Score=34.81  Aligned_cols=65  Identities=14%  Similarity=0.088  Sum_probs=50.1

Q ss_pred             CCCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHH
Q psy16241         36 FDSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTL  101 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l  101 (186)
                      .||-++-..+.+++.|..+...   || |.-++..||+.+.++..++-|++.|++| |+-|++-..+.-+
T Consensus        19 ~D~n~~~l~~~l~~~G~~v~~~~iv~D-d~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~~~   87 (164)
T 2is8_A           19 QDTTHLAIREVLAGGPFEVAAYELVPD-EPPMIKKVLRLWADREGLDLILTNGGTGLAPRDRTPEATREL   87 (164)
T ss_dssp             CCCHHHHHHHHHTTSSEEEEEEEEECS-CHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHTT
T ss_pred             ccchHHHHHHHHHHCCCeEeEEEEcCC-CHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCChHHHHHHH
Confidence            4776777778888889776653   44 6678899999887622689999999999 8999987666543

>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}

Probab=85.50  E-value=1.3  Score=34.03  Aligned_cols=66  Identities=9%  Similarity=-0.033  Sum_probs=50.8

Q ss_pred             CCCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHHHhc
Q psy16241         36 FDSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTLYKS  104 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l~~~  104 (186)
                      .||-+.-..+.+++.|..+...   || |.-++..||+.+.++  ++-|++.|++| |.-|++--.+.-++..
T Consensus        21 ~DtN~~~l~~~L~~~G~~v~~~~iv~D-d~~~I~~~l~~a~~~--~DlVittGG~g~~~~D~T~ea~a~~~~~   90 (172)
T 3kbq_A           21 VNTNAAFIGNFLTYHGYQVRRGFVVMD-DLDEIGWAFRVALEV--SDLVVSSGGLGPTFDDMTVEGFAKCIGQ   90 (172)
T ss_dssp             CCHHHHHHHHHHHHTTCEEEEEEEECS-CHHHHHHHHHHHHHH--CSEEEEESCCSSSTTCCHHHHHHHHHTC
T ss_pred             EeHHHHHHHHHHHHCCCEEEEEEEeCC-CHHHHHHHHHHHHhc--CCEEEEcCCCcCCcccchHHHHHHHcCC
Confidence            4665666667888899877653   44 677889999988863  89999999999 7899988777655543

>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A

Probab=85.32  E-value=1.2  Score=34.58  Aligned_cols=62  Identities=11%  Similarity=0.015  Sum_probs=49.0

Q ss_pred             CCCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHH
Q psy16241         36 FDSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNIN   99 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~   99 (186)
                      .||-++-..+.+++.|.++..+   || |.-++..+|+.+.. .+++-|++.|++| |.-|++--.+.
T Consensus        47 ~Dsn~~~L~~~L~~~G~~v~~~~iv~D-d~~~I~~al~~a~~-~~~DlVIttGGts~g~~D~t~eal~  112 (185)
T 3rfq_A           47 EDHSGPLVTELLTEAGFVVDGVVAVEA-DEVDIRNALNTAVI-GGVDLVVSVGGTGVTPRDVTPESTR  112 (185)
T ss_dssp             CCSHHHHHHHHHHHTTEEEEEEEEECS-CHHHHHHHHHHHHH-TTCSEEEEESCCSSSTTCCHHHHHH
T ss_pred             cCcHHHHHHHHHHHCCCEEEEEEEeCC-CHHHHHHHHHHHHh-CCCCEEEECCCCCCCCcccHHHHHH
Confidence            6887777788999999777653   44 66778899998874 4799999999999 78998865443

>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1

Probab=85.24  E-value=0.87  Score=34.36  Aligned_cols=62  Identities=8%  Similarity=0.116  Sum_probs=45.6

Q ss_pred             CCCCChHHHHH----HHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHH
Q psy16241         36 FDSVSSNSMGR----FLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNIN   99 (186)
Q Consensus        36 fDSi~~~~~~~----~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~   99 (186)
                      .||-++-..+.    +++.|.++...   || |.-++..||+.+.+ .+++-|++.|++| |.-|++--.+.
T Consensus        23 ~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~D-d~~~I~~~l~~a~~-~~~DlVittGG~g~~~~D~t~ea~~   92 (167)
T 2g2c_A           23 ENKALPLLQRLMSDELQDYSYELISEVVVPE-GYDTVVEAIATALK-QGARFIITAGGTGIRAKNQTPEATA   92 (167)
T ss_dssp             CCCHHHHHHHHHCC----CEEEEEEEEEECS-SHHHHHHHHHHHHH-TTCSEEEEESCCSSSTTCCHHHHHH
T ss_pred             eccHHHHHHHhHHhHHHHCCCEEeEEEEeCC-CHHHHHHHHHHHHh-CCCCEEEECCCCCCCCCcChHHHHH
Confidence            57766666778    88888766543   44 67788999999886 4699999999999 79999876554

>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A

Probab=81.60  E-value=1.5  Score=34.18  Aligned_cols=63  Identities=10%  Similarity=0.021  Sum_probs=47.2

Q ss_pred             CCCCChHHHHHHHhcCCc--eee---CCCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHH
Q psy16241         36 FDSVSSNSMGRFLALGSD--IVP---TPDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNIN   99 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~--i~~---~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~   99 (186)
                      .||-.+-..+.+++.|..  +..   .|| |.-.+..||+.+.+..+++-|++.|++| |.-|++--.+.
T Consensus        21 ~D~n~~~L~~~L~~~G~~~~v~~~~iV~D-d~~~I~~al~~a~~~~~~DlVitTGGtg~g~~D~T~ea~~   89 (195)
T 1di6_A           21 QDKGIPALEEWLTSALTTPFELETRLIPD-EQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATL   89 (195)
T ss_dssp             -CCHHHHHHHHHHHHBCSCEEEEEEEEES-CHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHH
T ss_pred             EchHHHHHHHHHHHcCCCCceEEEEEeCC-CHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCccHHHHHH
Confidence            477777777889988876  333   355 6778888999887633799999999999 78899865543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d1ig3a2	169	c.100.1.1 (A:10-178) Thiamin pyrophosphokinase, ca	2e-22
d1ig0a2	221	c.100.1.1 (A:3-223) Thiamin pyrophosphokinase, cat	9e-19
d1ig0a1	96	b.82.6.1 (A:224-319) Thiamin pyrophosphokinase, su	1e-15
d1ig3a1	85	b.82.6.1 (A:179-263) Thiamin pyrophosphokinase, su	1e-15

>d1ig3a2 c.100.1.1 (A:10-178) Thiamin pyrophosphokinase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Thiamin pyrophosphokinase, catalytic domain
superfamily: Thiamin pyrophosphokinase, catalytic domain
family: Thiamin pyrophosphokinase, catalytic domain
domain: Thiamin pyrophosphokinase, catalytic domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.5 bits (214), Expect = 2e-22
 Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 12/121 (9%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQ 60
            +R   D G +      +    +   + P+ V+GDFDS+       +   G D++ TPDQ
Sbjct: 51  LLRACADGGANHLY---DLTEGERESFLPEFVSGDFDSIRPEVKEYYTKKGCDLISTPDQ 107

Query: 61  SYTDFQKAVMEITKRE-----KIDYLISIVEFNGRLDHCMSNINTLYKSS----LPIYLL 111
            +TDF K +  + ++      ++D ++++    GR D  M+++NTL++++    +PI ++
Sbjct: 108 DHTDFTKCLQVLQRKIEEKELQVDVIVTLGGLGGRFDQIMASVNTLFQATHITPVPIIII 167

Query: 112 S 112
            
Sbjct: 168 Q 168

>d1ig0a2 c.100.1.1 (A:3-223) Thiamin pyrophosphokinase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Thiamin pyrophosphokinase, catalytic domain
superfamily: Thiamin pyrophosphokinase, catalytic domain
family: Thiamin pyrophosphokinase, catalytic domain
domain: Thiamin pyrophosphokinase, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.2 bits (192), Expect = 9e-19
 Identities = 26/148 (17%), Positives = 41/148 (27%), Gaps = 43/148 (29%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQ 60
            ++   D   +R   +L+        Y P+ + GD DS+S      +      I+    Q
Sbjct: 61  DLKVCADGAANRLYDYLDDDETLRIKYLPNYIIGDLDSLSEKVYKYYRKNKVTIIKQTTQ 120

Query: 61  SYTDFQKAVMEITKREKIDYLISIVEFN-------------------------------- 88
             TDF K V  I+         S++                                   
Sbjct: 121 YSTDFTKCVNLISLHFNSPEFRSLISNKDNLQSNHGIELEKGIHTLYNTMTESLVFSKVT 180

Query: 89  -----------GRLDHCMSNINTLYKSS 105
                      GR D  + +I  LY  S
Sbjct: 181 PISLLALGGIGGRFDQTVHSITQLYTLS 208

>d1ig0a1 b.82.6.1 (A:224-319) Thiamin pyrophosphokinase, substrate-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 96

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Thiamin pyrophosphokinase, substrate-binding domain
family: Thiamin pyrophosphokinase, substrate-binding domain
domain: Thiamin pyrophosphokinase, substrate-binding domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.7 bits (163), Expect = 1e-15
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 116 MSWVLRANAGLHRIHLNPGFTSGK-KTLGLIPVGSPVQQVYSTGLKWNLNNHTLAF-GGM 173
           + ++++       I  +P F +      GL+P+G       + GLKW++ N   +   G 
Sbjct: 3   LIFLIKK--NGTLIEYDPQFRNTCIGNCGLLPIGEATLVKETRGLKWDVKNWPTSVVTGR 60

Query: 174 VSSSNTYENET 184
           VSSSN +  + 
Sbjct: 61  VSSSNRFVGDN 71

>d1ig3a1 b.82.6.1 (A:179-263) Thiamin pyrophosphokinase, substrate-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Thiamin pyrophosphokinase, substrate-binding domain
family: Thiamin pyrophosphokinase, substrate-binding domain
domain: Thiamin pyrophosphokinase, substrate-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.3 bits (162), Expect = 1e-15
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 116 MSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVS 175
           + ++L+   G HR+H++ G        GLIPVG P  QV +TGLKWNL N  L FG +VS
Sbjct: 3   LIYLLQP--GKHRLHVDTGME--GSWCGLIPVGQPCNQVTTTGLKWNLTNDVLGFGTLVS 58

Query: 176 SSNTYENETT 185
           +SNTY+    
Sbjct: 59  TSNTYDGSGL 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1ig3a2	169	Thiamin pyrophosphokinase, catalytic domain {Mouse	100.0
d1ig0a2	221	Thiamin pyrophosphokinase, catalytic domain {Baker	100.0
d1ig3a1	85	Thiamin pyrophosphokinase, substrate-binding domai	99.76
d1ig0a1	96	Thiamin pyrophosphokinase, substrate-binding domai	99.47
d2nqra3	149	MoeA, central domain {Escherichia coli [TaxId: 562	90.68
d1uz5a3	148	MoeA, central domain {Archaeon Pyrococcus horikosh	88.22
d2ftsa3	155	Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId	88.18
d1y5ea1	155	MoaB {Bacillus cereus [TaxId: 1396]}	83.53
d1wu2a3	144	MoeA, central domain {Pyrococcus horikoshii, PH164	82.34
d2g2ca1	163	Putative molybdenum cofactor biosynthesis protein	80.56
d1o1xa_	145	Putative sugar-phosphate isomerase {Thermotoga mar	80.28

>d1ig3a2 c.100.1.1 (A:10-178) Thiamin pyrophosphokinase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thiamin pyrophosphokinase, catalytic domain
superfamily: Thiamin pyrophosphokinase, catalytic domain
family: Thiamin pyrophosphokinase, catalytic domain
domain: Thiamin pyrophosphokinase, catalytic domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.3e-35  Score=228.06  Aligned_cols=110  Identities=27%  Similarity=0.595  Sum_probs=97.6

Q ss_pred             CEEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhh-----
Q psy16241          1 KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKR-----   75 (186)
Q Consensus         1 ~~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~-----   75 (186)
                      .++||||||||+|+++..   ..+.++.||+|||||||++++.+++|+++|+++++.|+||+||+||||+++.++     
T Consensus        51 ~~~I~aDGGAN~L~d~~~---~~~~~~~PD~IiGDfDSi~~~~~~~~~~~g~~ii~~~dQD~TD~eKAl~~~~~~~~~~~  127 (169)
T d1ig3a2          51 LLRACADGGANHLYDLTE---GERESFLPEFVSGDFDSIRPEVKEYYTKKGCDLISTPDQDHTDFTKCLQVLQRKIEEKE  127 (169)
T ss_dssp             SEEEEETTHHHHHHHTCT---TCGGGCCCSEEEECTTSSCHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEcCHHHHHHHHhh---ccccCCCCCEEEecCCCCChHHHHHHHhcCCeEEECcccCcchHHHHHHHHHHhhhhhc
Confidence            479999999999999731   133479999999999999999999999999999999999999999999998643     


Q ss_pred             cCCCEEEEEEcCCCchhHHHHHHHHHHhcC----CCEEEEcC
Q psy16241         76 EKIDYLISIVEFNGRLDHCMSNINTLYKSS----LPIYLLSA  113 (186)
Q Consensus        76 ~~~~~i~v~G~~GgR~DH~l~ni~~l~~~~----~~i~l~~~  113 (186)
                      .+++.|+++|++|||+||+|+|+++|+++.    .+++++++
T Consensus       128 ~~~~~I~vlG~~GGR~DH~lanl~~L~~~~~~~~~~VIll~e  169 (169)
T d1ig3a2         128 LQVDVIVTLGGLGGRFDQIMASVNTLFQATHITPVPIIIIQK  169 (169)
T ss_dssp             CCCSEEEEECCSSSCHHHHHHHHHHHHHGGGTCSSCEEEEET
T ss_pred             cCCCEEEEEeCCCCcHHHHHHHHHHHHHhhcCCCCcEEEecC
Confidence            488999999999999999999999999987    57777653

>d1ig0a2 c.100.1.1 (A:3-223) Thiamin pyrophosphokinase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin pyrophosphokinase, catalytic domain
superfamily: Thiamin pyrophosphokinase, catalytic domain
family: Thiamin pyrophosphokinase, catalytic domain
domain: Thiamin pyrophosphokinase, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-34  Score=231.23  Aligned_cols=105  Identities=25%  Similarity=0.370  Sum_probs=92.2

Q ss_pred             CEEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhh-----
Q psy16241          1 KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKR-----   75 (186)
Q Consensus         1 ~~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~-----   75 (186)
                      .++||||||||+|+++...+...+.++.||+|||||||++++++++|+.+|+++++.|+||+|||+|||+++..+     
T Consensus        61 ~~~IcADGGANrL~d~~~~~~~~~~~~~PD~IiGD~DSI~~~v~~yy~~~g~~ii~~~dQdsTDf~KAL~~i~~~~~~~~  140 (221)
T d1ig0a2          61 DLKVCADGAANRLYDYLDDDETLRIKYLPNYIIGDLDSLSEKVYKYYRKNKVTIIKQTTQYSTDFTKCVNLISLHFNSPE  140 (221)
T ss_dssp             SEEEEETTHHHHHHHHSCSCHHHHTTSCCSEEEECCTTSCHHHHHHHHHTTCEEEECCCSSSCHHHHHHHHHHHHHHCHH
T ss_pred             CEEEEEcCcHHHHHHhhhcccccccCCCCCEEEccccCCCHHHHHHHhcCCCeEEECCCCCcCHHHHHHHHHHhhccccc
Confidence            479999999999999854322234579999999999999999999999999999999999999999999987642     


Q ss_pred             --------------------------------------cCCCEEEEEEcCCCchhHHHHHHHHHHhcC
Q psy16241         76 --------------------------------------EKIDYLISIVEFNGRLDHCMSNINTLYKSS  105 (186)
Q Consensus        76 --------------------------------------~~~~~i~v~G~~GgR~DH~l~ni~~l~~~~  105 (186)
                                                            .+..+|+++||+|||+||+|+||++|+++.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iLGalGGR~DhtlsnI~~Ly~~~  208 (221)
T d1ig0a2         141 FRSLISNKDNLQSNHGIELEKGIHTLYNTMTESLVFSKVTPISLLALGGIGGRFDQTVHSITQLYTLS  208 (221)
T ss_dssp             HHHHHTCSSCTTTGGGCCTTTHHHHHHHHHHTTCCGGGSCCEEEEEESSSSSSHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccccccccccccccccccccccccccccccccCCceEEEEcCCCChHHHHHHHHHHHHhhc
Confidence                                                  234589999999999999999999999987

>d1ig3a1 b.82.6.1 (A:179-263) Thiamin pyrophosphokinase, substrate-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Thiamin pyrophosphokinase, substrate-binding domain
family: Thiamin pyrophosphokinase, substrate-binding domain
domain: Thiamin pyrophosphokinase, substrate-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=2.9e-19  Score=123.61  Aligned_cols=67  Identities=48%  Similarity=0.873  Sum_probs=61.9

Q ss_pred             CeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCceeeeEEecceEecCCcccccCCcceeeeeEecCC
Q psy16241        114 KYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENET  184 (186)
Q Consensus       114 ~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~vt~~Glky~L~~~~l~~~~~~~~SNe~~~~~  184 (186)
                      ++++|+++  ||+|.|+.+..+  .|++|||||+++++++||++||||||+++.|.+|.++|+||++.+++
T Consensus         1 d~i~~lL~--pG~~~I~~~~~~--~g~~~sliPl~~~~~~vt~~Glky~L~~~~l~~g~~~s~SN~~~~~~   67 (85)
T d1ig3a1           1 DSLIYLLQ--PGKHRLHVDTGM--EGSWCGLIPVGQPCNQVTTTGLKWNLTNDVLGFGTLVSTSNTYDGSG   67 (85)
T ss_dssp             TEEEEEEC--SEEEEEECCSSC--EEEEEEEECCSSCEEEEEEESBSSCCSSEEEBTTTBCEEEECBCSSS
T ss_pred             CcEEEEEC--CCcEEEeCCCCc--cCCEEEEEECCCcceeEEEeCCEEeCCCCEEECCCccCcceeEcCCC
Confidence            47899999  899999988765  68899999999999899999999999999999999999999998764

>d1ig0a1 b.82.6.1 (A:224-319) Thiamin pyrophosphokinase, substrate-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Thiamin pyrophosphokinase, substrate-binding domain
family: Thiamin pyrophosphokinase, substrate-binding domain
domain: Thiamin pyrophosphokinase, substrate-binding domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=8.2e-15  Score=102.34  Aligned_cols=68  Identities=26%  Similarity=0.500  Sum_probs=57.1

Q ss_pred             eEEEEEecCCCeEEEEeCCCCCC-CCCEEEEEecCCceeeeEEecceEecCCccccc-CCcceeeeeEecCC
Q psy16241        115 YMSWVLRANAGLHRIHLNPGFTS-GKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAF-GGMVSSSNTYENET  184 (186)
Q Consensus       115 ~~i~~l~~~~g~~~i~~~~~~~~-~~~~~Sl~pl~~~~~~vt~~Glky~L~~~~l~~-~~~~~~SNe~~~~~  184 (186)
                      +++|+++  +|.|.+..++.... ...+|||+|+++++..++++||||+|+++.++| |+.+++||++.+++
T Consensus         2 ~lifLL~--~G~~~I~~~~~~~~~~~~~CGLiP~g~p~~~~tT~GLkWnl~~~~~~~~gg~vSTSN~i~~~~   71 (96)
T d1ig0a1           2 DLIFLIK--KNGTLIEYDPQFRNTCIGNCGLLPIGEATLVKETRGLKWDVKNWPTSVVTGRVSSSNRFVGDN   71 (96)
T ss_dssp             EEEEEEC--SSCEEEECCHHHHHHHEEEEEEECTTSCEEEEEEESBSEEEEEEEEBTTTTBCEEEEEBCBSS
T ss_pred             cEEEEEc--CCCeEEEcCccccCCCCCcEEEEECCCCcccEECcCeeEECCCCEeEeeCceEEeCccccCCC
Confidence            6889999  99999988754310 124799999999987789999999999999998 89999999987653

>d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Escherichia coli [TaxId: 562]

Probab=90.68  E-value=0.21  Score=35.54  Aligned_cols=64  Identities=17%  Similarity=0.217  Sum_probs=50.0

Q ss_pred             CCCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHH
Q psy16241         36 FDSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTL  101 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l  101 (186)
                      +||-+.-....+++.|.++...+  ..|...+..|++.+.+  .++-|++.|+.+ |+.|++-..+.-+
T Consensus        25 ~dsN~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~--~~DivittGG~s~g~~D~~~~~l~~~   91 (149)
T d2nqra3          25 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADS--QADVVISSGGVSVGEADYTKTILEEL   91 (149)
T ss_dssp             ECCHHHHHHHHHHHTTCEEEEEEEECSSHHHHHHHHHHHHH--HCSEEEECSSSCSSSCSHHHHHHHHH
T ss_pred             eecchHHHHhhhhhcceEEEEccccCChHHHHHHHHHhccc--ccCEEEEcCCccCCchHHHHHHHHHc
Confidence            57877777788999998887753  2366778889888876  389999999988 7999987766554

>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]

Probab=88.22  E-value=0.44  Score=33.61  Aligned_cols=64  Identities=14%  Similarity=0.094  Sum_probs=45.7

Q ss_pred             CCCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHH
Q psy16241         36 FDSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTL  101 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l  101 (186)
                      .||-+.-....+++.|.++....  ..|......|++.+.++  ++-|++.|+.| |+.|++-..+.-+
T Consensus        25 ~dsn~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~--~DliIttGG~s~g~~D~~~~~l~~~   91 (148)
T d1uz5a3          25 YDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNV--GDVVVISGGASGGTKDLTASVIEEL   91 (148)
T ss_dssp             ECCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHH--CSEEEEECCC-----CHHHHHHHHH
T ss_pred             eeCChHHHHHhhhcccccceeeeeeccHHHHHHHHHHhhhcc--ccEEEECCCcccchhhHHHHHHHHc
Confidence            47766666788899998876642  33788889999988863  79999999998 6899987666544

>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: Gephyrin, domain 5
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.18  E-value=0.35  Score=34.28  Aligned_cols=62  Identities=18%  Similarity=0.147  Sum_probs=48.3

Q ss_pred             CCCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHH
Q psy16241         36 FDSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNIN   99 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~   99 (186)
                      .||-+.-...++++.|.++....  ..|.-.+..|++.+.+  .++-|++.|++| |+.|++-..+.
T Consensus        25 ~dsN~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~--~~DliittGG~s~g~~D~~~~~l~   89 (155)
T d2ftsa3          25 RDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGIS--RADVIITSGGVSMGEKDYLKQVLD   89 (155)
T ss_dssp             ECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHH--HCSEEEEESCCSSSCCHHHHHHHH
T ss_pred             eechHHHHHHHhcccccceEEEEEecCchhHHHHHHHHhhc--ccCEEEEeccccCCcchhhHHHHH
Confidence            47766667788999998887642  2377888999998876  489999999999 79998766554

>d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: MoaB
species: Bacillus cereus [TaxId: 1396]

Probab=83.53  E-value=0.35  Score=34.19  Aligned_cols=61  Identities=13%  Similarity=0.138  Sum_probs=44.5

Q ss_pred             CCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHH
Q psy16241         37 DSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSN   97 (186)
Q Consensus        37 DSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~n   97 (186)
                      |+-.+-+.+.+++.|.++....  ..|.-.+..+++.+.....++-|+..|+.| |+.|++-..
T Consensus        19 D~ngp~L~~~l~~~G~~v~~~~iv~D~~~~i~~~l~~~~~~~~~DlIvTtGGts~g~~D~t~~a   82 (155)
T d1y5ea1          19 DKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRDVTIEA   82 (155)
T ss_dssp             CHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSSTTCCHHHH
T ss_pred             CccHHHHHHHHHhcCCEEEEeeeecchHHHHHHHHHHHHhccCCCEEEEeeeeecccccccchh
Confidence            4445556688999998877642  237777888888776535788999999988 799987533

>d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus horikoshii, PH1647 [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Pyrococcus horikoshii, PH1647 [TaxId: 53953]

Probab=82.34  E-value=0.16  Score=36.06  Aligned_cols=60  Identities=8%  Similarity=-0.018  Sum_probs=40.0

Q ss_pred             CCCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHH
Q psy16241         36 FDSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSN   97 (186)
Q Consensus        36 fDSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~n   97 (186)
                      .||-+......+++.|+++...+  ..|..+++.||+.+.+  .++-|++.|+.| |+.|++-..
T Consensus        29 ~dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~--~~DlvIttGG~s~g~~D~~~~~   91 (144)
T d1wu2a3          29 VETNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKN--ECDIVLITGGSAFGDKDYAHKF   91 (144)
T ss_dssp             ECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHH--CSEEEECC--------CCSTTT
T ss_pred             eecCchHHhhhhcccCcceeEEEEecchHHHHHHHHHHhhh--cccEEEEccccccCcchhccch
Confidence            47766667788889998887742  2377789999998876  478899999888 788986543

>d2g2ca1 c.57.1.1 (A:1-163) Putative molybdenum cofactor biosynthesis protein DIP0503 {Corynebacterium diphtheriae [TaxId: 1717]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: Putative molybdenum cofactor biosynthesis protein DIP0503
species: Corynebacterium diphtheriae [TaxId: 1717]

Probab=80.56  E-value=0.7  Score=32.82  Aligned_cols=63  Identities=6%  Similarity=0.051  Sum_probs=43.5

Q ss_pred             CCCCChHHHHHHH----hcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHH
Q psy16241         36 FDSVSSNSMGRFL----ALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNIN   99 (186)
Q Consensus        36 fDSi~~~~~~~~~----~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~   99 (186)
                      -|+-.+...+++.    +.|+++....  ..|.-....+++.+.+ .+++-|+..|++| |.-|.+-..+.
T Consensus        20 ~D~~g~~~~~~L~~~l~~~G~~v~~~~iv~D~~~~i~~~~~~a~~-~~~DlVittGG~g~~~~D~T~~av~   89 (163)
T d2g2ca1          20 ENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALK-QGARFIITAGGTGIRAKNQTPEATA   89 (163)
T ss_dssp             CCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHH-TTCSEEEEESCCSSSTTCCHHHHHH
T ss_pred             ccCchHHHHHHHHHHHHhCCeEEEEEEeecchHHHHHHHHHhhhc-cCCCEEEecCCCCCCCcccccccee
Confidence            4555555556654    4466665532  3355567888888876 5899999999999 78999876654

>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribose/Galactose isomerase RpiB/AlsB
superfamily: Ribose/Galactose isomerase RpiB/AlsB
family: Ribose/Galactose isomerase RpiB/AlsB
domain: Putative sugar-phosphate isomerase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.28  E-value=3.8  Score=28.65  Aligned_cols=48  Identities=19%  Similarity=0.339  Sum_probs=34.8

Q ss_pred             HHHHHHHhcCCceeeC-C--C--CCccHHHHHHHHHHhhcCCCEEEEEEcCC-C
Q psy16241         42 NSMGRFLALGSDIVPT-P--D--QSYTDFQKAVMEITKREKIDYLISIVEFN-G   89 (186)
Q Consensus        42 ~~~~~~~~~g~~i~~~-p--d--kD~TD~e~Al~~~~~~~~~~~i~v~G~~G-g   89 (186)
                      +.+++++++|.+++.+ +  +  -|+.|+..++-........+.-++++++| |
T Consensus        19 ~l~~~L~~~g~~v~D~G~~~~~~~dYpd~a~~va~~v~~~~~~~GIliCGtG~G   72 (145)
T d1o1xa_          19 KVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGTGLG   72 (145)
T ss_dssp             HHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHH
T ss_pred             HHHHHHHHCCCEEEECCCCCCCCCCccHHHHHHHHHHhcCcccEEEEecCCcHH
Confidence            4567888889888874 2  2  26778777777666545677888899988 5