Psyllid ID: psy16256

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MLFGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPIAH
Secondary Structure (PSIPRED)
cEEEEEccEEEEEEEEEEEEccccEEEEEEEEEEcccccccccEEEEcccccEEEEEEEccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEcccccccccccEEEEEEEEEccccccHHHEEEccccccEEEEEcccccccccccEEEccc
Coil and Loop (DISEMBL)
mlfgspndfpivhakheeksdsksVYREYNrefllpkgtnpesiksslskdgvltveaplpalgapeklipiah
Flexible Loop (DISEMBL)
mlfgspndfpivhakheeksdsksvYREYNREfllpkgtnpesiKSSLSKDGVLTVeaplpalgapeklipiah
Low Complexity Region (SEG)
MLFGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPIAH
Disordered region (IsUnstruct)
**************************************************************************
Disordered Region (DISOPRED)
MLFGSPNDFPIVHAKHE******SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEA***********IPI**
Disordered Region (DISEMBL)
MLFGSPNDFPIVHAKH********VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPIAH
Disordered Region (DISPRO)
*LFGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPI**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLFGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPIAH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	74	2.2.26 [Sep-21-2011]
P82147	187	Protein lethal(2)essentia	no	N/A	0.918	0.363	0.450	5e-10
P23927	175	Alpha-crystallin B chain	yes	N/A	0.837	0.354	0.460	3e-09
Q5R9K0	175	Alpha-crystallin B chain	yes	N/A	0.837	0.354	0.460	3e-09
P02511	175	Alpha-crystallin B chain	yes	N/A	0.837	0.354	0.460	3e-09
Q05557	174	Alpha-crystallin B chain	N/A	N/A	0.905	0.385	0.455	3e-09
Q60HG8	175	Alpha-crystallin B chain	N/A	N/A	0.837	0.354	0.460	3e-09
Q9EPF3	175	Alpha-crystallin B chain	N/A	N/A	0.837	0.354	0.460	5e-09
P23928	175	Alpha-crystallin B chain	yes	N/A	0.837	0.354	0.460	5e-09
P05811	175	Alpha-crystallin B chain	N/A	N/A	0.837	0.354	0.460	5e-09
Q7M2W6	175	Alpha-crystallin B chain	yes	N/A	0.837	0.354	0.460	6e-09

>sp|P82147|L2EFL_DROME Protein lethal(2)essential for life OS=Drosophila melanogaster GN=l(2)efl PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 7   NDFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGA 65
           + F IV  KHEEK D    V R+++R + LP   NP+++ SSLS DG+LT++AP+ AL  
Sbjct: 99  DKFVIVEGKHEEKQDEHGYVSRQFSRRYQLPSDVNPDTVTSSLSSDGLLTIKAPMKALPP 158

Query: 66  P--EKLIPIAH 74
           P  E+L+ I  
Sbjct: 159 PQTERLVQITQ 169

Vital role in embryonic development.
Drosophila melanogaster (taxid: 7227)

>sp|P23927|CRYAB_MOUSE Alpha-crystallin B chain OS=Mus musculus GN=Cryab PE=1 SV=2

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 12  VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+ I
Sbjct: 100 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTI 159

Query: 71  PIA 73
           PI 
Sbjct: 160 PIT 162

May contribute to the transparency and refractive index of the lens.

Mus musculus (taxid: 10090)

>sp|Q5R9K0|CRYAB_PONAB Alpha-crystallin B chain OS=Pongo abelii GN=CRYAB PE=2 SV=1

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 12  VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+ I
Sbjct: 100 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTI 159

Query: 71  PIA 73
           PI 
Sbjct: 160 PIT 162

May contribute to the transparency and refractive index of the lens.

Pongo abelii (taxid: 9601)

>sp|P02511|CRYAB_HUMAN Alpha-crystallin B chain OS=Homo sapiens GN=CRYAB PE=1 SV=2

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 12  VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+ I
Sbjct: 100 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTI 159

Query: 71  PIA 73
           PI 
Sbjct: 160 PIT 162

May contribute to the transparency and refractive index of the lens.

Homo sapiens (taxid: 9606)

>sp|Q05557|CRYAB_ANAPL Alpha-crystallin B chain OS=Anas platyrhynchos GN=CRYAB PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 8   DFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAP 66
           D   +H KHEE+ D    + RE+NR++ +P   +P +I SSLS DGVLTV AP      P
Sbjct: 95  DMVEIHGKHEERQDEHGFIAREFNRKYRIPADVDPLTITSSLSLDGVLTVSAPRKQSDVP 154

Query: 67  EKLIPIAH 74
           E+ IPI  
Sbjct: 155 ERSIPITR 162

May contribute to the transparency and refractive index of the lens.

Anas platyrhynchos (taxid: 8839)

>sp|Q60HG8|CRYAB_MACFA Alpha-crystallin B chain OS=Macaca fascicularis GN=CRYAB PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 12  VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+ I
Sbjct: 100 VHGKHEERQDEHGFISREFHRKYRVPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTI 159

Query: 71  PIA 73
           PI 
Sbjct: 160 PIT 162

May contribute to the transparency and refractive index of the lens.

Macaca fascicularis (taxid: 9541)

>sp|Q9EPF3|CRYAB_SPAJD Alpha-crystallin B chain OS=Spalax judaei GN=CRYAB PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 12  VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P      PE+ I
Sbjct: 100 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQASGPERTI 159

Query: 71  PIA 73
           PI 
Sbjct: 160 PIT 162

May contribute to the transparency and refractive index of the lens.

Spalax judaei (taxid: 134510)

>sp|P23928|CRYAB_RAT Alpha-crystallin B chain OS=Rattus norvegicus GN=Cryab PE=1 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 12  VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P      PE+ I
Sbjct: 100 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQASGPERTI 159

Query: 71  PIA 73
           PI 
Sbjct: 160 PIT 162

May contribute to the transparency and refractive index of the lens.

Rattus norvegicus (taxid: 10116)

>sp|P05811|CRYAB_MESAU Alpha-crystallin B chain OS=Mesocricetus auratus GN=CRYAB PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 12  VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P      PE+ I
Sbjct: 100 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQASGPERTI 159

Query: 71  PIA 73
           PI 
Sbjct: 160 PIT 162

May contribute to the transparency and refractive index of the lens.

Mesocricetus auratus (taxid: 10036)

>sp|Q7M2W6|CRYAB_PIG Alpha-crystallin B chain OS=Sus scrofa GN=CRYAB PE=2 SV=1

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 12  VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P      PE+ I
Sbjct: 100 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGPERTI 159

Query: 71  PIA 73
           PI 
Sbjct: 160 PIT 162

May contribute to the transparency and refractive index of the lens.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
193618013	203	PREDICTED: alpha-crystallin B chain-like	0.864	0.315	0.921	5e-27
328699752	194	PREDICTED: alpha-crystallin B chain-like	0.864	0.329	0.921	6e-27
350417746	193	PREDICTED: heat shock protein beta-1-lik	0.864	0.331	0.906	2e-26
340729374	193	PREDICTED: heat shock protein beta-1-lik	0.864	0.331	0.906	2e-26
383855516	228	PREDICTED: heat shock protein beta-1-lik	0.864	0.280	0.906	2e-26
340729370	228	PREDICTED: heat shock protein beta-1-lik	0.864	0.280	0.906	3e-26
156545575	190	PREDICTED: heat shock protein beta-6-lik	0.864	0.336	0.906	3e-26
340729372	258	PREDICTED: heat shock protein beta-1-lik	0.864	0.248	0.906	3e-26
307183305	259	Heat shock protein beta-1 [Camponotus fl	0.864	0.247	0.906	3e-26
110757651	227	PREDICTED: heat shock protein beta-1-lik	0.864	0.281	0.906	4e-26

>gi|193618013|ref|XP_001949446.1| PREDICTED: alpha-crystallin B chain-like isoform 2 [Acyrthosiphon pisum]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/64 (92%), Positives = 63/64 (98%)

Query: 11  IVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           +VHAKHEEKSDSKSVYREYNREFLLPKGTNPE+IKSSLSKDGVLTVEAPLPALG P+KLI
Sbjct: 139 LVHAKHEEKSDSKSVYREYNREFLLPKGTNPEAIKSSLSKDGVLTVEAPLPALGGPDKLI 198

Query: 71  PIAH 74
           PI+H
Sbjct: 199 PISH 202

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328699752|ref|XP_001949486.2| PREDICTED: alpha-crystallin B chain-like isoform 3 [Acyrthosiphon pisum]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 59/64 (92%), Positives = 63/64 (98%)

Query: 11  IVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           +VHAKHEEKSDSKSVYREYNREFLLPKGTNPE+IKSSLSKDGVLTVEAPLPALG P+KLI
Sbjct: 130 LVHAKHEEKSDSKSVYREYNREFLLPKGTNPEAIKSSLSKDGVLTVEAPLPALGGPDKLI 189

Query: 71  PIAH 74
           PI+H
Sbjct: 190 PISH 193

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417746|ref|XP_003491574.1| PREDICTED: heat shock protein beta-1-like isoform 4 [Bombus impatiens]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 62/64 (96%)

Query: 11  IVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           +VHAKHEEK++SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA+G  EKLI
Sbjct: 129 LVHAKHEEKTESKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAIGTGEKLI 188

Query: 71  PIAH 74
           PIAH
Sbjct: 189 PIAH 192

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729374|ref|XP_003402979.1| PREDICTED: heat shock protein beta-1-like isoform 4 [Bombus terrestris]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 62/64 (96%)

Query: 11  IVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           +VHAKHEEK++SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA+G  EKLI
Sbjct: 129 LVHAKHEEKTESKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAIGTGEKLI 188

Query: 71  PIAH 74
           PIAH
Sbjct: 189 PIAH 192

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855516|ref|XP_003703256.1| PREDICTED: heat shock protein beta-1-like isoform 2 [Megachile rotundata]

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 62/64 (96%)

Query: 11  IVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           +VHAKHEEK++SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA+G  EKLI
Sbjct: 164 LVHAKHEEKTESKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAIGTGEKLI 223

Query: 71  PIAH 74
           PIAH
Sbjct: 224 PIAH 227

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729370|ref|XP_003402977.1| PREDICTED: heat shock protein beta-1-like isoform 2 [Bombus terrestris] gi|350417742|ref|XP_003491572.1| PREDICTED: heat shock protein beta-1-like isoform 2 [Bombus impatiens]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 62/64 (96%)

Query: 11  IVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           +VHAKHEEK++SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA+G  EKLI
Sbjct: 164 LVHAKHEEKTESKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAIGTGEKLI 223

Query: 71  PIAH 74
           PIAH
Sbjct: 224 PIAH 227

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156545575|ref|XP_001607669.1| PREDICTED: heat shock protein beta-6-like isoform 1 [Nasonia vitripennis] gi|226442061|gb|ACO57620.1| small heat shock protein [Pteromalus puparum] gi|343488866|gb|AEM45800.1| small heat shock protein [Pteromalus puparum]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 62/64 (96%)

Query: 11  IVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           +VHAKHEEK+D+KSVYREYNREFLLPKGTNPE+IKSSLSKDGVLTVEAPLPALG  EKLI
Sbjct: 126 LVHAKHEEKTDTKSVYREYNREFLLPKGTNPETIKSSLSKDGVLTVEAPLPALGQGEKLI 185

Query: 71  PIAH 74
           PIAH
Sbjct: 186 PIAH 189

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729372|ref|XP_003402978.1| PREDICTED: heat shock protein beta-1-like isoform 3 [Bombus terrestris]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 62/64 (96%)

Query: 11  IVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           +VHAKHEEK++SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA+G  EKLI
Sbjct: 194 LVHAKHEEKTESKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAIGTGEKLI 253

Query: 71  PIAH 74
           PIAH
Sbjct: 254 PIAH 257

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183305|gb|EFN70174.1| Heat shock protein beta-1 [Camponotus floridanus]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 63/64 (98%)

Query: 11  IVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           +VHAKHEEK++SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA+G+ EKLI
Sbjct: 195 LVHAKHEEKTESKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAIGSGEKLI 254

Query: 71  PIAH 74
           PIAH
Sbjct: 255 PIAH 258

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110757651|ref|XP_392405.3| PREDICTED: heat shock protein beta-1-like isoform 1 [Apis mellifera]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 62/64 (96%)

Query: 11  IVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           +VHAKHEEK++SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA+G  EKLI
Sbjct: 163 LVHAKHEEKTESKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAIGTGEKLI 222

Query: 71  PIAH 74
           PIAH
Sbjct: 223 PIAH 226

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
FB|FBgn0031037	192	CG14207 [Drosophila melanogast	0.864	0.333	0.875	2.9e-25
WB|WBGene00002023	219	hsp-25 [Caenorhabditis elegans	0.716	0.242	0.735	2.5e-17
FB|FBgn0011296	187	l(2)efl "lethal (2) essential	0.864	0.342	0.477	2.8e-11
ZFIN|ZDB-GENE-040718-419	180	cryabb "crystallin, alpha B, b	0.878	0.361	0.5	3.5e-11
UNIPROTKB|Q05557	174	CRYAB "Alpha-crystallin B chai	0.878	0.373	0.469	9.4e-11
UNIPROTKB|E9PNH7	106	CRYAB "Alpha-crystallin B chai	0.824	0.575	0.467	1.5e-10
UNIPROTKB|E9PR44	174	CRYAB "Alpha-crystallin B chai	0.824	0.350	0.467	1.5e-10
UNIPROTKB|P02511	175	CRYAB "Alpha-crystallin B chai	0.824	0.348	0.467	1.5e-10
UNIPROTKB|Q5R9K0	175	CRYAB "Alpha-crystallin B chai	0.824	0.348	0.467	1.5e-10
MGI|MGI:88516	175	Cryab "crystallin, alpha B" [M	0.824	0.348	0.467	1.5e-10

FB|FBgn0031037 CG14207 [Drosophila melanogaster (taxid:7227)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 56/64 (87%), Positives = 60/64 (93%)

Query:    11 IVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
             +VHAKHEEKSD+KSVYREYNREFLLPKG NPESI+SSLSKDGVLTV+APLPAL A E LI
Sbjct:   128 LVHAKHEEKSDTKSVYREYNREFLLPKGVNPESIRSSLSKDGVLTVDAPLPALTAGETLI 187

Query:    71 PIAH 74
             PIAH
Sbjct:   188 PIAH 191

GO:0030018 "Z disc" evidence=IDA

GO:0010998 "regulation of translational initiation by eIF2 alpha phosphorylation" evidence=IMP

GO:0010506 "regulation of autophagy" evidence=IMP

GO:0006497 "protein lipidation" evidence=IMP

WB|WBGene00002023 hsp-25 [Caenorhabditis elegans (taxid:6239)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 39/53 (73%), Positives = 47/53 (88%)

Query:    11 IVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 63
             +VHAKHEEK+  ++V+REYN+EFLLP+GTNPE I S+LS DGVLTVEAPLP L
Sbjct:   163 LVHAKHEEKTPQRTVFREYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQL 215

GO:0055120 "striated muscle dense body" evidence=IDA

GO:0031430 "M band" evidence=IDA

FB|FBgn0011296 l(2)efl "lethal (2) essential for life" [Drosophila melanogaster (taxid:7227)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 32/67 (47%), Positives = 45/67 (67%)

Query:     9 FPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAP- 66
             F IV  KHEEK D    V R+++R + LP   NP+++ SSLS DG+LT++AP+ AL  P 
Sbjct:   101 FVIVEGKHEEKQDEHGYVSRQFSRRYQLPSDVNPDTVTSSLSSDGLLTIKAPMKALPPPQ 160

Query:    67 -EKLIPI 72
              E+L+ I
Sbjct:   161 TERLVQI 167

GO:0009408 "response to heat" evidence=NAS

GO:0009790 "embryo development" evidence=NAS

GO:0010998 "regulation of translational initiation by eIF2 alpha phosphorylation" evidence=IMP

GO:0010506 "regulation of autophagy" evidence=IMP

GO:0006497 "protein lipidation" evidence=IMP

ZFIN|ZDB-GENE-040718-419 cryabb "crystallin, alpha B, b" [Danio rerio (taxid:7955)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 33/66 (50%), Positives = 42/66 (63%)

Query:     8 DFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAP 66
             DF  +HAKHE++ D    V RE+ R++ +P G +P SI SSLS DGVLTV  PL     P
Sbjct:    85 DFIEIHAKHEDRQDGHGFVSREFLRKYRVPVGVDPASITSSLSSDGVLTVTGPLKLSDGP 144

Query:    67 EKLIPI 72
             E+ I I
Sbjct:   145 ERTIAI 150

GO:0005212 "structural constituent of eye lens" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0051082 "unfolded protein binding" evidence=IDA

UNIPROTKB|Q05557 CRYAB "Alpha-crystallin B chain" [Anas platyrhynchos (taxid:8839)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 31/66 (46%), Positives = 41/66 (62%)

Query:     8 DFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAP 66
             D   +H KHEE+ D    + RE+NR++ +P   +P +I SSLS DGVLTV AP      P
Sbjct:    95 DMVEIHGKHEERQDEHGFIAREFNRKYRIPADVDPLTITSSLSLDGVLTVSAPRKQSDVP 154

Query:    67 EKLIPI 72
             E+ IPI
Sbjct:   155 ERSIPI 160

GO:0042803 "protein homodimerization activity" evidence=ISS

UNIPROTKB|E9PNH7 CRYAB "Alpha-crystallin B chain" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 29/62 (46%), Positives = 40/62 (64%)

Query:    12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
             VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+ I
Sbjct:    33 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTI 92

Query:    71 PI 72
             PI
Sbjct:    93 PI 94

GO:0005212 "structural constituent of eye lens" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0031109 "microtubule polymerization or depolymerization" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEA

GO:0032432 "actin filament bundle" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0051403 "stress-activated MAPK cascade" evidence=IEA

GO:0060561 "apoptotic process involved in morphogenesis" evidence=IEA

GO:2000378 "negative regulation of reactive oxygen species metabolic process" evidence=IEA

UNIPROTKB|E9PR44 CRYAB "Alpha-crystallin B chain" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 29/62 (46%), Positives = 40/62 (64%)

Query:    12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
             VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+ I
Sbjct:   100 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTI 159

Query:    71 PI 72
             PI
Sbjct:   160 PI 161

GO:0005212 "structural constituent of eye lens" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0031109 "microtubule polymerization or depolymerization" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEA

GO:0032432 "actin filament bundle" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0051403 "stress-activated MAPK cascade" evidence=IEA

GO:0060561 "apoptotic process involved in morphogenesis" evidence=IEA

GO:2000378 "negative regulation of reactive oxygen species metabolic process" evidence=IEA

UNIPROTKB|P02511 CRYAB "Alpha-crystallin B chain" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 29/62 (46%), Positives = 40/62 (64%)

Query:    12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
             VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+ I
Sbjct:   100 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTI 159

Query:    71 PI 72
             PI
Sbjct:   160 PI 161

GO:0005212 "structural constituent of eye lens" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0031109 "microtubule polymerization or depolymerization" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEA

GO:0032432 "actin filament bundle" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0051403 "stress-activated MAPK cascade" evidence=IEA

GO:0060561 "apoptotic process involved in morphogenesis" evidence=IEA

GO:2000378 "negative regulation of reactive oxygen species metabolic process" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0006936 "muscle contraction" evidence=TAS

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0032387 "negative regulation of intracellular transport" evidence=IDA

UNIPROTKB|Q5R9K0 CRYAB "Alpha-crystallin B chain" [Pongo abelii (taxid:9601)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 29/62 (46%), Positives = 40/62 (64%)

Query:    12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
             VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+ I
Sbjct:   100 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTI 159

Query:    71 PI 72
             PI
Sbjct:   160 PI 161

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

MGI|MGI:88516 Cryab "crystallin, alpha B" [Mus musculus (taxid:10090)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 29/62 (46%), Positives = 40/62 (64%)

Query:    12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
             VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+ I
Sbjct:   100 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTI 159

Query:    71 PI 72
             PI
Sbjct:   160 PI 161

GO:0001666 "response to hypoxia" evidence=IMP

GO:0002088 "lens development in camera-type eye" evidence=IGI

GO:0005212 "structural constituent of eye lens" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006006 "glucose metabolic process" evidence=ISO

GO:0006457 "protein folding" evidence=ISO

GO:0007021 "tubulin complex assembly" evidence=IMP

GO:0007517 "muscle organ development" evidence=IGI

GO:0008017 "microtubule binding" evidence=ISO

GO:0008092 "cytoskeletal protein binding" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0010629 "negative regulation of gene expression" evidence=IMP

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0030018 "Z disc" evidence=IDA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0031109 "microtubule polymerization or depolymerization" evidence=ISO

GO:0031674 "I band" evidence=ISO

GO:0032387 "negative regulation of intracellular transport" evidence=ISO

GO:0032432 "actin filament bundle" evidence=ISO

GO:0042542 "response to hydrogen peroxide" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043010 "camera-type eye development" evidence=IGI

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;IMP

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IGI

GO:0043292 "contractile fiber" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

GO:0051403 "stress-activated MAPK cascade" evidence=ISO

GO:0060561 "apoptotic process involved in morphogenesis" evidence=IGI

GO:2000378 "negative regulation of reactive oxygen species metabolic process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	74
cd06526	83	cd06526, metazoan_ACD, Alpha-crystallin domain (AC	2e-20
cd06475	86	cd06475, ACD_HspB1_like, Alpha crystallin domain (	2e-12
cd06478	83	cd06478, ACD_HspB4-5-6, Alpha-crystallin domain fo	3e-12
pfam00011	101	pfam00011, HSP20, Hsp20/alpha crystallin family	3e-12
cd06464	88	cd06464, ACD_sHsps-like, Alpha-crystallin domain (	3e-10
cd06498	84	cd06498, ACD_alphaB-crystallin_HspB5, Alpha-crysta	4e-10
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	6e-10
cd06497	86	cd06497, ACD_alphaA-crystallin_HspB4, Alpha-crysta	5e-08
cd06476	83	cd06476, ACD_HspB2_like, Alpha crystallin domain (	1e-07
cd06481	87	cd06481, ACD_HspB9_like, Alpha crystallin domain (	3e-07
COG0071	146	COG0071, IbpA, Molecular chaperone (small heat sho	3e-04
cd06480	91	cd06480, ACD_HspB8_like, Alpha-crystallin domain (	0.003
cd06479	81	cd06479, ACD_HspB7_like, Alpha crystallin domain (	0.003

>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

 Score = 76.4 bits (189), Expect = 2e-20
 Identities = 27/51 (52%), Positives = 36/51 (70%), Gaps = 1/51 (1%)

Query: 11 IVHAKHEEKSDSK-SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60
          +V  KHEE+ D    V RE+ R + LP+G +P+S+ SSLS DGVLT+EAP 
Sbjct: 33 VVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 83

>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

 Score = 56.0 bits (135), Expect = 2e-12
 Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60
          +  KHEEK D    V R + R++ LP G +P ++ SSLS DG+LTVEAP+
Sbjct: 37 ITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVEAPI 86

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiation, cell growth, development, and apoptosis. Its activity can be regulated by phosphorylation. Its unphosphorylated state is a high molecular weight aggregated form (100-800kDa) composed of up to 24 subunits, which forms as a result of multiple interactions within the ACD, and is required for chaperone function and resistance to oxidative stress. Upon phosphorylation these large aggregates rapidly disassociate to smaller oligomers and chaperone activity is modified. High constitutive levels of Hsp27 have been detected in various cancer cells, in particular those of carcinoma origin. Over-expression of Hsp27 has a protective effect against various diseases-processes, including Huntington's disease. Mutations in Hsp27 have been associated with a form of distal hereditary motor neuropathy type II and Charcot-Marie-Tooth disease type 2. Length = 86

>gnl|CDD|107233 cd06478, ACD_HspB4-5-6, Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

 Score = 55.5 bits (134), Expect = 3e-12
 Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 8  DFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
          DF  +H KHEE+ D    + RE++R + LP G +P +I SSLS DGVLT+  P
Sbjct: 30 DFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP 82

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activities. HspB5 is protective in demyelinating disease such as multiple sclerosis (MS), being a negative regulator of inflammation. In early active MS lesions it is the most abundant gene transcript and an autoantigen, the immune response against it would disrupt its function and worsen inflammation and demyelination. Given as therapy for ongoing demyelinating disease it may counteract this effect. It is an autoantigen in the pathogenesis of various other inflammatory disorders including Lens-associated uveitis (LAU), and Behcet's disease. Mutations in HspB5 have been associated with diseases including dominant cataract and desmin-related myopathy. Mutations in HspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). HspB6 (Hsp20) is ubiquitous and is involved in diverse functions including regulation of glucose transport and contraction of smooth muscle, in platelet aggregation, in cardioprotection, and in the prevention of apoptosis. It interacts with the universal scaffolding and adaptor protein 14-3-3, and also with the proapoptotic protein Bax. Length = 83

>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family

 Score = 56.1 bits (136), Expect = 3e-12
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 8/73 (10%)

Query: 7   NDFPIVHAKHE-EKSDSKSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60
           ++  +V  KHE E+ D   +     YR ++R+F+LP+  +P+ +K+SL KDGVLTV  P 
Sbjct: 29  DNRVLVKGKHEKEEEDDHGLRSERSYRSFSRKFVLPENADPDKVKASL-KDGVLTVTVPK 87

Query: 61  PALGAP-EKLIPI 72
                   + I I
Sbjct: 88  LEPPEKKPRRIQI 100

Length = 101

>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

 Score = 51.0 bits (123), Expect = 3e-10
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 8/56 (14%)

Query: 11 IVHAKHEEKSDSKS-------VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
           +  + EE+ + +         Y  ++R F LP+  +P+ IK+SL ++GVLT+  P
Sbjct: 33 TISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASL-ENGVLTITLP 87

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 88

>gnl|CDD|107246 cd06498, ACD_alphaB-crystallin_HspB5, Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

 Score = 50.4 bits (120), Expect = 4e-10
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 8  DFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
          DF  +H KHEE+ D    + RE+ R++ +P   +P +I SSLS DGVLTV  P
Sbjct: 30 DFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGP 82

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activities. HspB5 is protective in demyelinating disease such as multiple sclerosis (MS), being a negative regulator of inflammation. In early active MS lesions it is the most abundant gene transcript and an autoantigen, the immune response against it would disrupt its function and worsen inflammation and demyelination. Given as therapy for ongoing demyelinating disease it may counteract this effect. It is an autoantigen in the pathogenesis of various other inflammatory disorders including Lens-associated uveitis (LAU), and Behcet's disease. Mutations in HspB5 have been associated with diseases including dominant cataract and desmin-related myopathy. Length = 84

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 49.9 bits (120), Expect = 6e-10
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 11 IVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
           +  K EE+ + +  Y E+ R F LP+  +PE  K+SL ++GVL +  P
Sbjct: 32 TISGKREEEEERERSYGEFERSFELPEDVDPEKSKASL-ENGVLEITLP 79

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

>gnl|CDD|107245 cd06497, ACD_alphaA-crystallin_HspB4, Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

 Score = 45.0 bits (106), Expect = 5e-08
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 7  NDFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
          +D+  +H KH E+ D    + RE++R + LP   +  +I  SLS DG+LT   P
Sbjct: 32 DDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract. Length = 86

>gnl|CDD|107231 cd06476, ACD_HspB2_like, Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

 Score = 43.8 bits (103), Expect = 1e-07
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
          V A+H ++ D    V RE+ R ++LP   +P  +++SLS DG+L ++AP
Sbjct: 34 VSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAP 82

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients. The ACD of hHspB2 binds the DMPK kinase domain. In vitro, hHspB2 enhances the kinase activity of DMPK and confers thermoresistance. The hHspB2 gene lies less than 1kb from the 5 prime end of the related alphaB (HspB4)-crystallin gene, with the opposite transcription direction. These two genes may share regulatory elements for their expression. Length = 83

>gnl|CDD|107236 cd06481, ACD_HspB9_like, Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

 Score = 43.2 bits (102), Expect = 3e-07
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 11 IVHAKHEEKSDSKS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
          +V  K E+K++ +       Y+E+ RE  LP+  +PE++  SLS  G L + AP
Sbjct: 33 VVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRAP 86

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone. Length = 87

>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 25  VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
            Y E+ R F LP+  +PE IK+   K+G+LTV  P
Sbjct: 98  AYGEFERTFRLPEKVDPEVIKAKY-KNGLLTVTLP 131

Length = 146

>gnl|CDD|107235 cd06480, ACD_HspB8_like, Alpha-crystallin domain (ACD) found in mammalian 21

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60
          V  KHEE+      V + + ++  LP   +P ++ +SLS +G+L +EAP 
Sbjct: 42 VSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAPQ 91

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II. Length = 91

>gnl|CDD|107234 cd06479, ACD_HspB7_like, Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

 Score = 32.6 bits (74), Expect = 0.003
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 16 HEEKSDSK-SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEA 58
          H EK  S  +V   +  +  LP+  +P S+ SSL +DG LT++A
Sbjct: 36 HAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKA 79

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
KOG3591|consensus	173		99.89
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	99.85
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	99.85
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	99.85
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	99.84
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	99.83
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	99.81
PRK10743	137	heat shock protein IbpA; Provisional	99.78
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	99.78
PRK11597	142	heat shock chaperone IbpB; Provisional	99.77
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	99.77
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	99.77
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	99.77
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	99.76
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	99.74
COG0071	146	IbpA Molecular chaperone (small heat shock protein	99.74
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	99.65
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	99.6
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	99.6
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	99.57
KOG0710|consensus	196		99.26
cd00298	80	ACD_sHsps_p23-like This domain family includes the	99.25
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	98.61
cd06463	84	p23_like Proteins containing this p23_like domain	98.13
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	97.24
PF05455	177	GvpH: GvpH; InterPro: IPR008633 This family consis	96.64
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	96.33
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	95.59
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	92.95
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	90.37
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	90.23
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	88.44
PRK10743	137	heat shock protein IbpA; Provisional	88.26
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	88.01
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	87.62
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	87.59
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	87.39
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	87.19
PRK11597	142	heat shock chaperone IbpB; Provisional	85.3
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	85.02
cd06488	87	p23_melusin_like p23_like domain similar to the C-	82.26
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	81.36
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	81.29
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	80.33
PF13349	166	DUF4097: Domain of unknown function (DUF4097)	80.19

>KOG3591|consensus

Probab=99.89  E-value=6.1e-23  Score=135.18  Aligned_cols=74  Identities=42%  Similarity=0.659  Sum_probs=67.2

Q ss_pred             CeEEEECCEEEEEEEEEeecCC-CeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCCCC-CCeEEeccC
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGA-PEKLIPIAH   74 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~~-~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~~~-~~r~I~I~~   74 (74)
                      +.|++.|+.|.|+|+|+++.++ ||+.|+|.|+|.||++||+++|+|+|+.||+|+|++||..... .+|.|||++
T Consensus        88 l~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~~er~ipI~~  163 (173)
T KOG3591|consen   88 LKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQDNERSIPIEQ  163 (173)
T ss_pred             eEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCCCcCccceEEeEee
Confidence            3589999999999999988655 7999999999999999999999999999999999999998643 589999975

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=99.85  E-value=6.3e-21  Score=112.69  Aligned_cols=61  Identities=41%  Similarity=0.636  Sum_probs=53.8

Q ss_pred             CeEEEECCEEEEEEEEEeecC-CCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCC
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSD-SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP   61 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~-~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~   61 (74)
                      +.|++.+|.|+|+|+++.+.+ .+|.+++|+|+|.||.+||.++|+|+|++||+|+|++||+
T Consensus        23 i~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk~   84 (84)
T cd06498          23 LKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPRK   84 (84)
T ss_pred             eEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeCC
Confidence            368999999999999865443 3688999999999999999999999995599999999985

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=99.85  E-value=6e-21  Score=113.15  Aligned_cols=60  Identities=33%  Similarity=0.605  Sum_probs=53.5

Q ss_pred             CeEEEECCEEEEEEEEEeecC-CCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSD-SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL   60 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~-~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk   60 (74)
                      +.|++.+|.|+|+|++++..+ .+|..++|+|+|.||++||+++|+|+|++||+|+|++||
T Consensus        26 i~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~PK   86 (86)
T cd06497          26 LTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGPK   86 (86)
T ss_pred             eEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEecC
Confidence            368999999999999865443 368889999999999999999999999779999999997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=99.85  E-value=9.6e-21  Score=111.82  Aligned_cols=60  Identities=32%  Similarity=0.602  Sum_probs=53.5

Q ss_pred             CeEEEECCEEEEEEEEEeecCC-CeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL   60 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~~-~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk   60 (74)
                      +.|++++|.|+|+|+++...++ ++.+++|+|+|.||++||+++|+|+|++||+|+|++||
T Consensus        23 i~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr   83 (83)
T cd06476          23 ITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR   83 (83)
T ss_pred             eEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence            4689999999999998654443 68899999999999999999999999559999999997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=99.84  E-value=1.9e-20  Score=110.20  Aligned_cols=60  Identities=43%  Similarity=0.725  Sum_probs=53.3

Q ss_pred             CeEEEECCEEEEEEEEEeecC-CCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSD-SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL   60 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~-~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk   60 (74)
                      +.|++++|.|+|+|+++...+ .+|..++|.|+|.||.+||.++|+|+|++||+|+|++||
T Consensus        23 I~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK   83 (83)
T cd06478          23 LSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR   83 (83)
T ss_pred             eEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence            368999999999999865433 468889999999999999999999999669999999997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=99.83  E-value=5.6e-20  Score=110.44  Aligned_cols=60  Identities=30%  Similarity=0.545  Sum_probs=54.4

Q ss_pred             CeEEEECCEEEEEEEEEeecC-CCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSD-SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL   60 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~-~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk   60 (74)
                      +.|++.+|.|+|+|+|+++.+ .++.+|+|+|+|.||++||.+.|+|.|++||+|+|++|.
T Consensus        31 L~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP~   91 (91)
T cd06480          31 LTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAPQ   91 (91)
T ss_pred             cEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEcCC
Confidence            468999999999999987644 368999999999999999999999999889999999983

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=99.81  E-value=2.2e-19  Score=106.14  Aligned_cols=59  Identities=20%  Similarity=0.504  Sum_probs=52.6

Q ss_pred             CeEEEECCEEEEEEEEEeec-CCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEe
Q psy16256          1 MLFGSPNDFPIVHAKHEEKS-DSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP   59 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~-~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~P   59 (74)
                      +.|++++|.|+|+|++..+. +.++.+|+|+|+|.||++||.++|+|+|++||+|+|++|
T Consensus        23 I~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~   82 (83)
T cd06477          23 IIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVETK   82 (83)
T ss_pred             eEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence            46899999999999986543 346888999999999999999999999868999999987

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>PRK10743 heat shock protein IbpA; Provisional

Probab=99.78  E-value=1.4e-18  Score=110.85  Aligned_cols=70  Identities=16%  Similarity=0.322  Sum_probs=57.0

Q ss_pred             CeEEEECCEEEEEEEEEeecC-CCeE-----EEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC-CCCCeEEecc
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSD-SKSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL-GAPEKLIPIA   73 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~-~~~~-----~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~-~~~~r~I~I~   73 (74)
                      +.|++++|.|+|+|++....+ .+|.     +++|+|+|.||++||.+  +|+| +||||+|++||..+ ..++|+|+|+
T Consensus        61 i~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A~~-~dGVL~I~lPK~~~~~~~~r~I~I~  137 (137)
T PRK10743         61 LEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR--GANL-VNGLLYIDLERVIPEAKKPRRIEIN  137 (137)
T ss_pred             eEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC--cCEE-eCCEEEEEEeCCCccccCCeEEeeC
Confidence            368999999999999764333 2342     35899999999999999  5999 89999999999743 3578999985

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=99.78  E-value=1.9e-18  Score=102.54  Aligned_cols=60  Identities=32%  Similarity=0.489  Sum_probs=51.5

Q ss_pred             CeEEEECCEEEEEEEEEeecC---CCe--EEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSD---SKS--VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL   60 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~---~~~--~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk   60 (74)
                      +.|++++|.|+|+|+++...+   ..|  .+++|+|+|.||++||.++|+|.|++||+|+|++|+
T Consensus        23 I~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P~   87 (87)
T cd06481          23 LSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRAPR   87 (87)
T ss_pred             eEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEEcCC
Confidence            368999999999999865432   233  467999999999999999999999889999999996

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=99.77  E-value=4.6e-18  Score=109.07  Aligned_cols=71  Identities=13%  Similarity=0.168  Sum_probs=57.3

Q ss_pred             CeEEEECCEEEEEEEEEeecC-CCeE-----EEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC-CCCCeEEecc
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSD-SKSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL-GAPEKLIPIA   73 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~-~~~~-----~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~-~~~~r~I~I~   73 (74)
                      +.|++++|.|+|+|++....+ .+|.     +++|+|+|.||++||.+  +|+| +||||+|++||..+ ..++|+|+|+
T Consensus        59 i~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~-~nGVL~I~lPK~~~~~~~~rkI~I~  135 (142)
T PRK11597         59 LDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATF-VNGLLHIDLIRNEPEAIAPQRIAIS  135 (142)
T ss_pred             eEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEE-cCCEEEEEEeccCccccCCcEEEEC
Confidence            358899999999998754322 2342     35899999999999998  7999 89999999999743 3578999997


Q ss_pred             C
Q psy16256         74 H   74 (74)
Q Consensus        74 ~   74 (74)
                      .
T Consensus       136 ~  136 (142)
T PRK11597        136 E  136 (142)
T ss_pred             C
Confidence            4

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=99.77  E-value=8.9e-18  Score=100.50  Aligned_cols=72  Identities=28%  Similarity=0.517  Sum_probs=56.3

Q ss_pred             CeEEEECCEEEEEEEEE-eecCCCeE-----EEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCCC--CCCeEEec
Q psy16256          1 MLFGSPNDFPIVHAKHE-EKSDSKSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALG--APEKLIPI   72 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~-~~~~~~~~-----~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~~--~~~r~I~I   72 (74)
                      +.|+++++.|+|+|++. ...+..+.     ++.|.|+|.||+++|.++|+|.| +||+|+|++||....  ..+|.|+|
T Consensus        23 i~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~-~~GvL~I~~pk~~~~~~~~~~~I~I  101 (102)
T PF00011_consen   23 IKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASY-ENGVLTITIPKKEEEEDSQPKRIPI  101 (102)
T ss_dssp             EEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEE-TTSEEEEEEEBSSSCTTSSSCEE-E
T ss_pred             EEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEe-cCCEEEEEEEccccccCCCCeEEEe
Confidence            36899999999999988 22233332     36899999999999999999999 899999999999864  26899998


Q ss_pred             c
Q psy16256         73 A   73 (74)
Q Consensus        73 ~   73 (74)
                      +
T Consensus       102 ~  102 (102)
T PF00011_consen  102 K  102 (102)
T ss_dssp             T
T ss_pred             C
Confidence            5

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=99.77  E-value=3e-18  Score=100.85  Aligned_cols=58  Identities=29%  Similarity=0.483  Sum_probs=51.0

Q ss_pred             CeEEEECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL   60 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk   60 (74)
                      +.|++++|.|+|+|+++..  .+..+++|+|+|.||++||+++|+|+|++||+|+|++|+
T Consensus        24 i~V~v~~~~L~I~ger~~~--~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~   81 (81)
T cd06479          24 IIVTTSNNQIEVHAEKLAS--DGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR   81 (81)
T ss_pred             eEEEEECCEEEEEEEEecc--CCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence            3689999999999987532  245689999999999999999999998789999999985

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.77  E-value=5.5e-18  Score=99.16  Aligned_cols=60  Identities=45%  Similarity=0.744  Sum_probs=52.8

Q ss_pred             CeEEEECCEEEEEEEEEeecC-CCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSD-SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL   60 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~-~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk   60 (74)
                      +.|+++++.|+|+|+++...+ .++.+++|.|+|.||++||.++++|+|++||+|+|++||
T Consensus        23 I~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk   83 (83)
T cd06526          23 LKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK   83 (83)
T ss_pred             cEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence            468999999999999876544 358889999999999999999999999544999999997

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=99.76  E-value=3.9e-18  Score=101.06  Aligned_cols=59  Identities=42%  Similarity=0.701  Sum_probs=51.8

Q ss_pred             eEEEECCEEEEEEEEEeecC-CCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256          2 LFGSPNDFPIVHAKHEEKSD-SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL   60 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~~~~~-~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk   60 (74)
                      .|++++|.|+|+|+++...+ .++..++|+|+|.||++||+++|+|.|.+||+|+|++|.
T Consensus        27 ~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~lP~   86 (86)
T cd06475          27 VVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVEAPI   86 (86)
T ss_pred             EEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEEecC
Confidence            58999999999999865433 357889999999999999999999999449999999994

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=99.74  E-value=2.4e-17  Score=98.20  Aligned_cols=60  Identities=25%  Similarity=0.379  Sum_probs=51.4

Q ss_pred             CeEEEECCEEEEEEEEEeecC--C--CeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSD--S--KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL   60 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~--~--~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk   60 (74)
                      +.|++.+|.|+|+|+++...+  .  .+.+++|.|+|.||++||.++|+|+|.++|+|+|+.|.
T Consensus        24 I~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~~~~   87 (87)
T cd06482          24 VKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIETPC   87 (87)
T ss_pred             eEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEeeCC
Confidence            468999999999999865332  2  26788999999999999999999999777799999984

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=3e-17  Score=104.79  Aligned_cols=71  Identities=30%  Similarity=0.462  Sum_probs=59.6

Q ss_pred             eEEEECCEEEEEEEEEeec--C-CCe-----EEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCCC-CCCeEEec
Q psy16256          2 LFGSPNDFPIVHAKHEEKS--D-SKS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALG-APEKLIPI   72 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~~~~--~-~~~-----~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~~-~~~r~I~I   72 (74)
                      .|++++|.|+|+|++....  + .++     .+++|.|+|.||..||++.++|+| +||+|+|++||..++ ..++.|+|
T Consensus        67 ~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~-~nGvL~I~lpk~~~~~~~~~~i~I  145 (146)
T COG0071          67 EITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKY-KNGLLTVTLPKAEPEEKKPKRIEI  145 (146)
T ss_pred             EEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEe-eCcEEEEEEeccccccccCceeec
Confidence            5899999999999986522  2 233     457999999999999999999999 899999999999864 36788887


Q ss_pred             c
Q psy16256         73 A   73 (74)
Q Consensus        73 ~   73 (74)
                      +
T Consensus       146 ~  146 (146)
T COG0071         146 E  146 (146)
T ss_pred             C
Confidence            4

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=99.65  E-value=5.6e-16  Score=92.03  Aligned_cols=58  Identities=21%  Similarity=0.383  Sum_probs=47.4

Q ss_pred             eEEEECC-EEEEEEEEEeec--C-CCe-----EEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256          2 LFGSPND-FPIVHAKHEEKS--D-SKS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL   60 (74)
Q Consensus         2 ~~~v~~~-~L~I~g~~~~~~--~-~~~-----~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk   60 (74)
                      .|++++| .|+|+|++....  + ..+     .+++|.|+|.||.+||.+.|+|+| +||+|+|++||
T Consensus        26 ~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~-~nGvL~I~lPK   92 (92)
T cd06472          26 KVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFL-ENGVLTVTVPK   92 (92)
T ss_pred             EEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEE-ECCEEEEEecC
Confidence            5778765 899999875322  1 223     245899999999999999999999 89999999997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=99.60  E-value=4.3e-15  Score=88.07  Aligned_cols=58  Identities=28%  Similarity=0.566  Sum_probs=47.9

Q ss_pred             CeEEEECCEEEEEEEEEeec---CC--Ce-----EEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256          1 MLFGSPNDFPIVHAKHEEKS---DS--KS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL   60 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~---~~--~~-----~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk   60 (74)
                      +.|++++|.|+|+|++....   +.  .+     .++.|.|+|.|| ++|.+.++|+| +||+|+|++||
T Consensus        26 i~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~~-~dGvL~I~lPK   93 (93)
T cd06471          26 IKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAKY-ENGVLKITLPK   93 (93)
T ss_pred             eEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEEE-ECCEEEEEEcC
Confidence            36889999999999986422   11  23     235799999998 79999999999 89999999997

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.60  E-value=5.6e-15  Score=85.13  Aligned_cols=59  Identities=29%  Similarity=0.590  Sum_probs=50.6

Q ss_pred             CeEEEECCEEEEEEEEEeecCC-------CeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSDS-------KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL   60 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~~-------~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk   60 (74)
                      +.|++.++.|.|+|++......       ++.++.|.|+|.||.++|.+.++|.| .||+|+|++||
T Consensus        23 i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~-~~G~L~I~~pk   88 (88)
T cd06464          23 IKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASL-ENGVLTITLPK   88 (88)
T ss_pred             eEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEE-eCCEEEEEEcC
Confidence            3689999999999998754322       13467999999999999999999999 78999999997

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=99.57  E-value=2.4e-14  Score=85.02  Aligned_cols=57  Identities=19%  Similarity=0.338  Sum_probs=47.3

Q ss_pred             CeEEEECCEEEEEEEEEeecC--CCe-----EEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSD--SKS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL   60 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~--~~~-----~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk   60 (74)
                      +.|+++++.|+|+|++.....  .+|     .+++|.|+|.||.++|.+  +|+| +||+|+|++|+
T Consensus        27 i~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~-~~GvL~I~l~~   90 (90)
T cd06470          27 LEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAEL-ENGLLTIDLER   90 (90)
T ss_pred             eEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEE-eCCEEEEEEEC
Confidence            368899999999999865442  233     346899999999999985  9999 89999999985

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>KOG0710|consensus

Probab=99.26  E-value=5.5e-12  Score=84.30  Aligned_cols=70  Identities=23%  Similarity=0.405  Sum_probs=55.4

Q ss_pred             EEEECC-EEEEEEEEEeecC---C--Ce-----EEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC---CCCCe
Q psy16256          3 FGSPND-FPIVHAKHEEKSD---S--KS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL---GAPEK   68 (74)
Q Consensus         3 ~~v~~~-~L~I~g~~~~~~~---~--~~-----~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~---~~~~r   68 (74)
                      +.++++ .|+|+|++....+   .  .+     .++.|.|.|.||++++.+.|+|.| +||||+|.+||..+   ....+
T Consensus       112 v~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~~-~nGVL~VvvpK~~~~~~~~~v~  190 (196)
T KOG0710|consen  112 VEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEIKAEM-ENGVLTVVVPKLEPLLKKPKVR  190 (196)
T ss_pred             EEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHHHHHh-hCCeEEEEEecccccccCCccc
Confidence            567777 7999999864432   1  12     245899999999999999999999 89999999999986   23567


Q ss_pred             EEecc
Q psy16256         69 LIPIA   73 (74)
Q Consensus        69 ~I~I~   73 (74)
                      .|.|+
T Consensus       191 ~i~i~  195 (196)
T KOG0710|consen  191 QIAIS  195 (196)
T ss_pred             eeecc
Confidence            77764

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=99.25  E-value=7.3e-11  Score=65.28  Aligned_cols=58  Identities=31%  Similarity=0.580  Sum_probs=50.5

Q ss_pred             eEEEECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256          2 LFGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL   60 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk   60 (74)
                      .|.+.++.|.|+|++..........+.|.+.+.||..+|++.++|.+ .+|+|+|++||
T Consensus        23 ~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~-~~~~l~i~l~K   80 (80)
T cd00298          23 KVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASL-ENGVLEITLPK   80 (80)
T ss_pred             EEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEE-ECCEEEEEEcC
Confidence            57899999999998765433345678999999999999999999999 78999999997

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=98.61  E-value=2.5e-07  Score=52.58  Aligned_cols=35  Identities=20%  Similarity=0.183  Sum_probs=32.8

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      .|.+.+.||..||+++.+|++ .+|.|.|++||.+.
T Consensus        37 ~~~~~~~l~~~I~~e~~~~~~-~~~~l~i~L~K~~~   71 (78)
T cd06469          37 PYLFELDLAAPIDDEKSSAKI-GNGVLVFTLVKKEP   71 (78)
T ss_pred             CEEEEEeCcccccccccEEEE-eCCEEEEEEEeCCC
Confidence            589999999999999999999 79999999999864

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=98.13  E-value=1.2e-05  Score=45.19  Aligned_cols=54  Identities=19%  Similarity=0.047  Sum_probs=42.2

Q ss_pred             eEEEECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256          2 LFGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      .|.+.++.|.|++...   +    ...|...+.|+..||++..++++ .+|.|.|.++|..+
T Consensus        23 ~v~~~~~~l~i~~~~~---~----~~~~~~~~~L~~~I~~~~s~~~~-~~~~l~i~L~K~~~   76 (84)
T cd06463          23 KVEFTPKSLTVSVKGG---G----GKEYLLEGELFGPIDPEESKWTV-EDRKIEITLKKKEP   76 (84)
T ss_pred             EEEEecCEEEEEeeCC---C----CCceEEeeEccCccchhhcEEEE-eCCEEEEEEEECCC
Confidence            4566666777776532   0    13467888999999999999999 79999999999875

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=97.24  E-value=0.002  Score=36.57  Aligned_cols=35  Identities=23%  Similarity=0.189  Sum_probs=31.8

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      .|.-.+.|+..|+++..++.+ .+|.|.|.++|...
T Consensus        43 ~~~~~~~L~~~I~~~~s~~~~-~~~~vei~L~K~~~   77 (84)
T cd06466          43 EYQLELDLFGPIDPEQSKVSV-LPTKVEITLKKAEP   77 (84)
T ss_pred             eEEEecccccccCchhcEEEE-eCeEEEEEEEcCCC
Confidence            577788999999999999999 79999999999874

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []

Probab=96.64  E-value=0.011  Score=39.51  Aligned_cols=34  Identities=21%  Similarity=0.430  Sum_probs=30.2

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      .|.+.+.||.. +.+..+++| +||||+|++-+...
T Consensus       137 ~~~krv~L~~~-~~e~~~~t~-nNgILEIri~~~~~  170 (177)
T PF05455_consen  137 KYLKRVALPWP-DPEITSATF-NNGILEIRIRRTEE  170 (177)
T ss_pred             ceEeeEecCCC-ccceeeEEE-eCceEEEEEeecCC
Confidence            58899999977 789999999 89999999998764

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=96.33  E-value=0.017  Score=40.27  Aligned_cols=31  Identities=29%  Similarity=0.460  Sum_probs=27.4

Q ss_pred             EEEEEECCCCCCcCCcEEEeCCC-CEEEEEEe
Q psy16256         29 YNREFLLPKGTNPESIKSSLSKD-GVLTVEAP   59 (74)
Q Consensus        29 f~R~~~LP~~vd~~~i~A~l~~d-GvL~I~~P   59 (74)
                      |.=.+.||..||.+..+|.|+.+ ++|+|++|
T Consensus       296 y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp  327 (328)
T PF08190_consen  296 YRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP  327 (328)
T ss_pred             eEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence            56679999999999999999543 99999998

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=95.59  E-value=0.17  Score=27.70  Aligned_cols=50  Identities=18%  Similarity=0.115  Sum_probs=36.2

Q ss_pred             EEEECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256          3 FGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL   60 (74)
Q Consensus         3 ~~v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk   60 (74)
                      |++.++.|.++....    ++   ..|.-...|...|+++..+.++ .++.|.|++.|
T Consensus        30 v~~~~~~l~v~~~~~----~~---~~~~~~~~L~~~I~~~~s~~~~-~~~~i~i~L~K   79 (79)
T PF04969_consen   30 VDFTDTSLSVSIKSG----DG---KEYLLEGELFGEIDPDESTWKV-KDNKIEITLKK   79 (79)
T ss_dssp             EEEETTEEEEEEEET----TS---CEEEEEEEBSS-BECCCEEEEE-ETTEEEEEEEB
T ss_pred             EEEEeeEEEEEEEcc----CC---ceEEEEEEEeeeEcchhcEEEE-ECCEEEEEEEC
Confidence            455666666664321    11   4567777899999999999999 78899999986

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=92.95  E-value=0.9  Score=27.10  Aligned_cols=54  Identities=13%  Similarity=0.057  Sum_probs=40.1

Q ss_pred             eEEEECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256          2 LFGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA   62 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~   62 (74)
                      .|++..+.|.|++...  .+    .+.|.-.+.|...|+++.-+.++ .++.|.|+|.|..
T Consensus        25 ~V~~~~~~l~v~~~~~--~~----~~~y~~~~~L~~~I~pe~s~~~v-~~~kveI~L~K~~   78 (108)
T cd06465          25 KIKLEPTSLSFKAKGG--GG----GKKYEFDLEFYKEIDPEESKYKV-TGRQIEFVLRKKE   78 (108)
T ss_pred             EEEEECCEEEEEEEcC--CC----CeeEEEEeEhhhhccccccEEEe-cCCeEEEEEEECC
Confidence            4566677777776321  01    12355667999999999999999 6899999999987

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=90.37  E-value=0.58  Score=27.55  Aligned_cols=33  Identities=24%  Similarity=0.318  Sum_probs=28.2

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA   62 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~   62 (74)
                      .|.=...|| ++++++|+-++ .+|.|+|++-+..
T Consensus         9 ~~~v~adlP-G~~kedI~V~v-~~~~L~I~ger~~   41 (87)
T cd06482           9 NVLASVDVC-GFEPDQVKVKV-KDGKVQVSAEREN   41 (87)
T ss_pred             EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEec
Confidence            455667897 99999999999 7999999998764

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=90.23  E-value=0.76  Score=26.47  Aligned_cols=32  Identities=6%  Similarity=0.188  Sum_probs=27.9

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP   61 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~   61 (74)
                      .|.=.+.|| ++++++|+-.+ .+|.|+|++-+.
T Consensus         8 ~~~v~~dlp-G~~~edI~V~v-~~~~L~I~g~~~   39 (83)
T cd06478           8 RFSVNLDVK-HFSPEELSVKV-LGDFVEIHGKHE   39 (83)
T ss_pred             eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEc
Confidence            567788997 99999999999 799999999754

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=88.44  E-value=3.1  Score=23.52  Aligned_cols=54  Identities=9%  Similarity=0.024  Sum_probs=39.3

Q ss_pred             eEEEECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256          2 LFGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      .|++.++.|.+++...   + +   ..|.-.+.|...|++++-+.++ ..+-+.|.+.|...
T Consensus        24 ~v~~~~~~l~~~~~~~---~-~---~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~L~K~~~   77 (84)
T cd06489          24 SVEFEKRELSATVKLP---S-G---NDYSLKLHLLHPIVPEQSSYKI-LSTKIEIKLKKTEA   77 (84)
T ss_pred             EEEEeCCEEEEEEECC---C-C---CcEEEeeecCceecchhcEEEE-eCcEEEEEEEcCCC
Confidence            4566777777776431   1 1   1255567899999999999999 58889999999763

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>PRK10743 heat shock protein IbpA; Provisional

Probab=88.26  E-value=1.6  Score=27.72  Aligned_cols=33  Identities=15%  Similarity=0.309  Sum_probs=28.8

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA   62 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~   62 (74)
                      .|.=...|| +++.++|.-.+ ++|+|+|++-+..
T Consensus        46 ~~~v~aelP-Gv~kedi~V~v-~~~~LtI~ge~~~   78 (137)
T PRK10743         46 HYRIAIAVA-GFAESELEITA-QDNLLVVKGAHAD   78 (137)
T ss_pred             EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEECc
Confidence            577778997 99999999999 7999999997654

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=88.01  E-value=1.1  Score=25.98  Aligned_cols=33  Identities=21%  Similarity=0.231  Sum_probs=28.4

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA   62 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~   62 (74)
                      .|.=.+.|| ++++++|+-++ ++|.|+|++-+..
T Consensus         9 ~~~v~~dlp-G~~pedi~V~v-~~~~L~I~ger~~   41 (81)
T cd06479           9 TYQFAVDVS-DFSPEDIIVTT-SNNQIEVHAEKLA   41 (81)
T ss_pred             eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEec
Confidence            466678997 99999999999 7999999997754

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=87.62  E-value=1.2  Score=25.71  Aligned_cols=33  Identities=45%  Similarity=0.525  Sum_probs=28.5

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA   62 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~   62 (74)
                      .|.=.+.|| +++.++|+-.+ .+|.|+|++-+..
T Consensus        11 ~~~i~~~lP-Gv~~edi~v~~-~~~~L~I~g~~~~   43 (93)
T cd06471          11 EYIVEADLP-GFKKEDIKLDY-KDGYLTISAKRDE   43 (93)
T ss_pred             EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence            566678998 79999999999 7999999987764

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=87.59  E-value=1.3  Score=25.68  Aligned_cols=34  Identities=15%  Similarity=0.283  Sum_probs=29.1

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      +|.=.+.|| +++.++|+-.+ ++|.|+|++.+...
T Consensus        12 ~~~v~~~lP-G~~kedi~v~~-~~~~L~I~g~~~~~   45 (90)
T cd06470          12 NYRITLAVA-GFSEDDLEIEV-ENNQLTVTGKKADE   45 (90)
T ss_pred             eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEccc
Confidence            566678997 79999999999 79999999987654

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=87.39  E-value=1.3  Score=25.25  Aligned_cols=35  Identities=23%  Similarity=0.361  Sum_probs=30.1

Q ss_pred             EEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256         27 REYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus        27 r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      ..|.=.+.|| ++.+++|+-.+ .+|.|+|++-+...
T Consensus         7 ~~~~v~~dlp-G~~~edI~v~v-~~~~L~I~g~~~~~   41 (83)
T cd06526           7 EKFQVTLDVK-GFKPEELKVKV-SDNKLVVEGKHEER   41 (83)
T ss_pred             eeEEEEEECC-CCCHHHcEEEE-ECCEEEEEEEEeee
Confidence            3677789998 69999999999 79999999987653

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=87.19  E-value=2.4  Score=23.75  Aligned_cols=29  Identities=14%  Similarity=0.056  Sum_probs=25.3

Q ss_pred             ECCCCCCcCCcEEEeCCC-CEEEEEEeCCCC
Q psy16256         34 LLPKGTNPESIKSSLSKD-GVLTVEAPLPAL   63 (74)
Q Consensus        34 ~LP~~vd~~~i~A~l~~d-GvL~I~~Pk~~~   63 (74)
                      .|...||++...-++ .+ ..|.|+++|..+
T Consensus        48 ~L~~~I~~~~s~w~~-~~~~~v~i~L~K~~~   77 (85)
T cd06467          48 ELYAKVKVDESTWTL-EDGKLLEITLEKRNE   77 (85)
T ss_pred             cccCceeEcCCEEEE-eCCCEEEEEEEECCC
Confidence            588899999988899 67 899999999874

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=85.30  E-value=2.7  Score=26.89  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=29.2

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA   62 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~   62 (74)
                      .|.=...|| +++.++|.-.+ ++|.|+|++-+..
T Consensus        44 ~y~v~adlP-Gv~kedi~V~v-~~~~LtI~ge~~~   76 (142)
T PRK11597         44 HYRITLALA-GFRQEDLDIQL-EGTRLTVKGTPEQ   76 (142)
T ss_pred             EEEEEEEeC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence            588889997 99999999999 8999999997654

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=85.02  E-value=2.3  Score=24.66  Aligned_cols=32  Identities=31%  Similarity=0.426  Sum_probs=26.5

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP   61 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~   61 (74)
                      +|.=.+.|| +++.++++-++ .+|.|+|++-+.
T Consensus         8 ~~~i~~~lp-G~~~edi~I~~-~~~~L~I~g~~~   39 (102)
T PF00011_consen    8 EYIIKVDLP-GFDKEDIKIKV-DDNKLVISGKRK   39 (102)
T ss_dssp             EEEEEEE-T-TS-GGGEEEEE-ETTEEEEEEEEE
T ss_pred             EEEEEEECC-CCChHHEEEEE-ecCccceeceee
Confidence            466678997 89999999999 799999999887

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=82.26  E-value=7.3  Score=22.32  Aligned_cols=35  Identities=9%  Similarity=0.016  Sum_probs=30.3

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      .|.-.+.|-..||++..+-.. ..+-+.|.+.|.++
T Consensus        46 ~y~~~l~L~~~I~~~~s~~~v-~~~kvei~L~K~~~   80 (87)
T cd06488          46 EFQLDIELWGVIDVEKSSVNM-LPTKVEIKLRKAEP   80 (87)
T ss_pred             eEEEEeeccceEChhHcEEEe-cCcEEEEEEEeCCC
Confidence            467777999999999988888 68999999999874

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=81.36  E-value=3.2  Score=24.02  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=27.1

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA   62 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~   62 (74)
                      .|.=.+.| .++++++|+-++ .||.|+|++-+..
T Consensus         8 ~y~v~~dl-pG~~~edi~V~v-~~~~L~I~g~~~~   40 (83)
T cd06476           8 KYQVFLDV-CHFTPDEITVRT-VDNLLEVSARHPQ   40 (83)
T ss_pred             eEEEEEEc-CCCCHHHeEEEE-ECCEEEEEEEEcc
Confidence            35556788 589999999999 7999999997643

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=81.29  E-value=3.4  Score=23.07  Aligned_cols=31  Identities=26%  Similarity=0.380  Sum_probs=25.7

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEe
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAP   59 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~P   59 (74)
                      +..=+|.||++++.++++..+ .+.-|.|.++
T Consensus         9 ~V~i~i~~~~~~~~~dv~v~~-~~~~l~v~~~   39 (85)
T cd06467           9 EVTVTIPLPEGTKSKDVKVEI-TPKHLKVGVK   39 (85)
T ss_pred             EEEEEEECCCCCcceeEEEEE-EcCEEEEEEC
Confidence            345567899999999999999 5677888886

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=80.33  E-value=3.6  Score=23.93  Aligned_cols=33  Identities=15%  Similarity=0.153  Sum_probs=27.8

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA   62 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~   62 (74)
                      .|.=.+.| .+++++.|+-.+ .+|.|+|++-+..
T Consensus         8 ~~~v~~dl-pG~~~edI~V~v-~~~~L~I~ge~~~   40 (83)
T cd06477           8 MFQILLDV-VQFRPEDIIIQV-FEGWLLIKGQHGV   40 (83)
T ss_pred             eEEEEEEc-CCCCHHHeEEEE-ECCEEEEEEEEcc
Confidence            45666788 589999999999 8999999998654

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>PF13349 DUF4097: Domain of unknown function (DUF4097)

Probab=80.19  E-value=11  Score=23.37  Aligned_cols=56  Identities=16%  Similarity=0.166  Sum_probs=37.7

Q ss_pred             eEEEECCEEEEEEEEEee-cCCCeEE----EEEEEEEECCCCCCcCCcEEEeCCCCEEEEEE
Q psy16256          2 LFGSPNDFPIVHAKHEEK-SDSKSVY----REYNREFLLPKGTNPESIKSSLSKDGVLTVEA   58 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~~~-~~~~~~~----r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~   58 (74)
                      .++.+++.|.|..+.... ...++..    ..-.=.+.||++...+++.... .+|-+++.-
T Consensus        88 ~~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~-~~G~i~i~~  148 (166)
T PF13349_consen   88 EISVEGGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKT-SSGDITIED  148 (166)
T ss_pred             EEEEcCCEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEe-ccccEEEEc
Confidence            467788889888862111 1112211    1345578899999888999999 789998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	74
3l1g_A	96	Human Alphab Crystallin Length = 96		1e-10
2klr_A	175	Solid-State Nmr Structure Of The Alpha-Crystallin D		2e-10
2wj7_A	94	Human Alphab Crystallin Length = 94		8e-09
2y1y_A	90	Human Alphab Crystallin Acd(Residues 71-157) Length		4e-08
2y22_A	94	Human Alphab-Crystallin Domain (Residues 67-157) Le		4e-08
2y1z_A	94	Human Alphab Crystallin Acd R120g Length = 94		1e-07
2wj5_A	101	Rat Alpha Crystallin Domain Length = 101		4e-07
3l1e_A	106	Bovine Alphaa Crystallin Zinc Bound Length = 106		1e-06
3l1f_A	103	Bovine Alphaa Crystallin Length = 103		1e-06
3q9p_A	85	Hspb1 Fragment Length = 85		7e-06
3n3e_A	106	Zebrafish Alphaa Crystallin Length = 106		4e-05

>pdb|3L1G|A Chain A, Human Alphab Crystallin Length = 96

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
          VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+ I
Sbjct: 34 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTI 93
Query: 71 PIA 73
          PI 
Sbjct: 94 PIT 96

>pdb|2KLR|A Chain A, Solid-State Nmr Structure Of The Alpha-Crystallin Domain In Alphab- Crystallin Oligomers Length = 175

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 12  VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+ I
Sbjct: 100 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTI 159
Query: 71  PIA 73
           PI 
Sbjct: 160 PIT 162

>pdb|2WJ7|A Chain A, Human Alphab Crystallin Length = 94

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 68
          VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+
Sbjct: 37 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 94

>pdb|2Y1Y|A Chain A, Human Alphab Crystallin Acd(Residues 71-157) Length = 90

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 68
          VH KHEE+ D    + RE++R++ +P   +P +I SS S DGVLTV  P   +  PE+
Sbjct: 33 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSXSSDGVLTVNGPRKQVSGPER 90

>pdb|2Y22|A Chain A, Human Alphab-Crystallin Domain (Residues 67-157) Length = 94

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 68
          VH KHEE+ D    + RE++R++ +P   +P +I SS S DGVLTV  P   +  PE+
Sbjct: 37 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSXSSDGVLTVNGPRKQVSGPER 94

>pdb|2Y1Z|A Chain A, Human Alphab Crystallin Acd R120g Length = 94

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 68
          VH KHEE+ D    + RE++ ++ +P   +P +I SS+S DGVLTV  P   +  PE+
Sbjct: 37 VHGKHEERQDEHGFISREFHGKYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPER 94

>pdb|2WJ5|A Chain A, Rat Alpha Crystallin Domain Length = 101

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEA 58
          VHA+HEE+ D    + RE++R + LP G +P ++ S+LS +GVL+++A
Sbjct: 38 VHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQA 85

>pdb|3L1E|A Chain A, Bovine Alphaa Crystallin Zinc Bound Length = 106

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 8   DFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP-LPA--- 62
           DF  +H KH E+ D    + RE++R + LP   +  ++  SLS DG+LT   P +P+   
Sbjct: 35  DFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVD 94
Query: 63  LGAPEKLIPIA 73
            G  E+ IP++
Sbjct: 95  AGHSERAIPVS 105

>pdb|3L1F|A Chain A, Bovine Alphaa Crystallin Length = 103

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 8   DFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP-LPA--- 62
           DF  +H KH E+ D    + RE++R + LP   +  ++  SLS DG+LT   P +P+   
Sbjct: 32  DFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVD 91
Query: 63  LGAPEKLIPIA 73
            G  E+ IP++
Sbjct: 92  AGHSERAIPVS 102

>pdb|3Q9P|A Chain A, Hspb1 Fragment Length = 85

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 61
          +  KH  + D    + R + R++ LP G +P  + SSLS +G LTVEAP+P
Sbjct: 34 ITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMP 84

>pdb|3N3E|A Chain A, Zebrafish Alphaa Crystallin Length = 106

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 7   NDFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA--- 62
           +D+  +  KH E+ D    + RE++R + LP   +  +I  +LS DG+LT+  P  +   
Sbjct: 32  DDYVEIQGKHGERQDDHGYISREFHRRYRLPSNVDQSAITCTLSADGLLTLCGPKTSGID 91
Query: 63  LGAPEKLIPIA 73
            G  ++ IP+ 
Sbjct: 92  AGRGDRTIPVT 102
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	74
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	6e-21
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	9e-19
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	9e-19
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	9e-18
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	1e-17
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	1e-15
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	3e-15
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	3e-05
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	3e-05
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	1e-04
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	3e-04

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175

 Score = 80.0 bits (197), Expect = 6e-21
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 11  IVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKL 69
            VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+ 
Sbjct: 99  EVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERT 158

Query: 70  IPIAH 74
           IPI  
Sbjct: 159 IPITR 163

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106

 Score = 72.2 bits (177), Expect = 9e-19
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 7   NDFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGA 65
            DF  +H KH E+ D    + RE++R + LP   +  ++  SLS DG+LT   P    G 
Sbjct: 34  EDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGV 93

Query: 66  P----EKLIPIA 73
                E+ IP++
Sbjct: 94  DAGHSERAIPVS 105

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90

 Score = 71.7 bits (176), Expect = 9e-19
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 11 IVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 68
           VH KHEE+ D    + RE++R++ +P   +P +I SS+S DGVLTV  P   +  PE+
Sbjct: 32 EVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPER 90

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85

 Score = 69.3 bits (170), Expect = 9e-18
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 11 IVHAKHEEKSDSK-SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 61
           +  KH  + D    + R + R++ LP G +P  + SSLS +G LTVEAP+P
Sbjct: 33 EITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMP 84

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101

 Score = 69.4 bits (170), Expect = 1e-17
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 11  IVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKL 69
            VHA+HEE+ D    + RE++R + LP G +P ++ S+LS +GVL+++A   +  A    
Sbjct: 37  EVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPS 96

Query: 70  IPIA 73
            P A
Sbjct: 97  PPAA 100

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314

 Score = 67.9 bits (165), Expect = 1e-15
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 7   NDFPIVHAKHEEKSDSK----SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 61
            +   VH    ++  ++    S +RE+ + F+ P+  +    ++ +  DG++ VEAPL 
Sbjct: 256 GNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIV-DGLMVVEAPLF 313

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314

 Score = 67.2 bits (163), Expect = 3e-15
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 11  IVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62
           +V A+        ++     R   LP   +   I+++++ D VL +EAP+  
Sbjct: 138 VVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNE 189

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 7/51 (13%)

Query: 15 KHEEKSDSKSVYR------EYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
          K E  ++++   R       ++R F LP   + + I ++  ++GVL +  P
Sbjct: 46 KSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAG-RNGVLEIRIP 95

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151

 Score = 38.5 bits (90), Expect = 3e-05
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 15  KHEEKSDSKSVYR------EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPE- 67
             E++  +   +R      ++ R F L +    E +K+ L ++GVLTV  P   +  PE 
Sbjct: 86  TKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL-ENGVLTVTVPKAEVKKPEV 144

Query: 68  KLIPIA 73
           K I I+
Sbjct: 145 KAIQIS 150

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 15  KHEEKSDSKSVYR-------EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPE 67
                ++S+ +         E  R   LP     E+  +   ++GVL+V  P     + +
Sbjct: 98  SPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF-ENGVLSVILPKAE-SSIK 155

Query: 68  KLIPI 72
           K I I
Sbjct: 156 KGINI 160

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123

 Score = 35.3 bits (82), Expect = 3e-04
 Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 5/49 (10%)

Query: 15  KHEEKSDSKSVYREYN---REFLLPKGTNPES-IKSSLSKDGVLTVEAP 59
           +   +   K + +      +   LP     ++ I     ++GVLT+  P
Sbjct: 66  REITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKY-ENGVLTIRIP 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	99.9
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	99.86
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	99.86
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	99.83
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	99.82
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	99.76
4fei_A	102	Heat shock protein-related protein; stress respons	99.73
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	99.72
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	99.72
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	99.72
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	99.7
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	99.66
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	97.43
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	97.35
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	95.74
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	95.33
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	90.92
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	89.73
4fei_A	102	Heat shock protein-related protein; stress respons	89.35
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	89.29
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	89.23
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	88.51
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	86.46
3igf_A	374	ALL4481 protein; two-domained protein consisting o	83.14
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	81.42
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	80.99

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=99.90  E-value=3.6e-23  Score=125.43  Aligned_cols=74  Identities=32%  Similarity=0.609  Sum_probs=64.9

Q ss_pred             CeEEEECCEEEEEEEEEeecCC-CeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCCC----CCCeEEeccC
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALG----APEKLIPIAH   74 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~~-~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~~----~~~r~I~I~~   74 (74)
                      +.|++++|.|+|+|+++...++ +|.+++|.|+|.||.+||.++|+|+|++||+|+|++||.++.    .++|.|||++
T Consensus        28 i~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL~I~~PK~~~~~~~~~~~r~I~I~r  106 (106)
T 3l1e_A           28 LTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVSR  106 (106)
T ss_dssp             EEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEEEEEEEBCCCCTTTTSSSCCCCCCC
T ss_pred             EEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEEccCcccccCCCCeEeeecC
Confidence            3689999999999998765543 688899999999999999999999997799999999998764    3789999974

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=99.86  E-value=1.6e-21  Score=127.41  Aligned_cols=73  Identities=41%  Similarity=0.658  Sum_probs=54.7

Q ss_pred             eEEEECCEEEEEEEEEeecC-CCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCCCCCCeEEeccC
Q psy16256          2 LFGSPNDFPIVHAKHEEKSD-SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPIAH   74 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~~~~~-~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~~~~~r~I~I~~   74 (74)
                      .|++++|.|+|+|+++++.+ .+|.+++|.|+|.||++||.++|+|+|++||+|+|++||.+....+|+|+|++
T Consensus        90 ~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~I~lPK~~~~~~~r~I~I~~  163 (175)
T 2klr_A           90 KVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITR  163 (175)
T ss_dssp             EEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEEEEEECC-------------
T ss_pred             EEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEEEEEECCCCCCCCeEEEEec
Confidence            68999999999999976544 46889999999999999999999999966999999999987533469999963

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=99.86  E-value=3.9e-21  Score=115.51  Aligned_cols=70  Identities=33%  Similarity=0.539  Sum_probs=58.9

Q ss_pred             eEEEECCEEEEEEEEEeecCC-CeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCCCCCCeEEec
Q psy16256          2 LFGSPNDFPIVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPI   72 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~~~~~~-~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~~~~~r~I~I   72 (74)
                      .|++++|.|+|+|+++...++ +|..++|.|+|.||.+||.+.|+|+|++||+|+|++||.+. .+++.++|
T Consensus        28 ~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL~I~lPK~~~-~~~~~~~i   98 (101)
T 2wj5_A           28 SVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASA-QASLPSPP   98 (101)
T ss_dssp             EEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEEEEEECBCCC-CCSSCC--
T ss_pred             EEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEEEEEEECCCc-CCCCCCcc
Confidence            588999999999999765443 68889999999999999999999999669999999999875 34555554

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=99.83  E-value=2e-20  Score=109.39  Aligned_cols=61  Identities=34%  Similarity=0.629  Sum_probs=50.8

Q ss_pred             eEEEECCEEEEEEEEEeecC-CCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256          2 LFGSPNDFPIVHAKHEEKSD-SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA   62 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~~~~~-~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~   62 (74)
                      .|++++|.|+|+|+++...+ .+|.+++|.|+|.||++||.++|+|+|.+||+|+|++||+.
T Consensus        24 ~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~lPK~k   85 (85)
T 3q9p_A           24 TVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMPK   85 (85)
T ss_dssp             EEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEEEECCC
T ss_pred             EEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEEEEcCC
Confidence            58999999999999875543 35778999999999999999999999944999999999963

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=99.82  E-value=8.4e-20  Score=107.51  Aligned_cols=62  Identities=39%  Similarity=0.605  Sum_probs=54.4

Q ss_pred             eEEEECCEEEEEEEEEeecC-CCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256          2 LFGSPNDFPIVHAKHEEKSD-SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~~~~~-~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      .|++++|.|+|+|+++...+ .+|.+++|.|+|.||.+||.+.|+|+|++||+|+|++||...
T Consensus        23 ~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~pK~~~   85 (90)
T 2y1y_A           23 KVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGPRKQV   85 (90)
T ss_dssp             EEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEECBC--
T ss_pred             EEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEEcCCC
Confidence            68899999999999876544 368889999999999999999999999669999999999875

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=99.76  E-value=5.6e-19  Score=113.14  Aligned_cols=70  Identities=23%  Similarity=0.268  Sum_probs=58.8

Q ss_pred             eEEEECCEEEEEEEEEeec---CCCe------EEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCCCCCCeEEec
Q psy16256          2 LFGSPNDFPIVHAKHEEKS---DSKS------VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPI   72 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~~~~---~~~~------~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~~~~~r~I~I   72 (74)
                      .|++++|.|+|+|+++...   +++|      .+++|.|+|.||.+||.+.|+|+| +||+|+|++||.+. .++|+|+|
T Consensus        83 ~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~~-~nGvL~I~lpK~~~-~~~r~I~I  160 (161)
T 4eld_A           83 ILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF-ENGVLSVILPKAES-SIKKGINI  160 (161)
T ss_dssp             EEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEE-ETTEEEEEEEBCGG-GSCCCCCC
T ss_pred             EEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEEE-ECCEEEEEEEcCCC-CCCcEeec
Confidence            5899999999999986532   2223      234899999999999999999999 89999999999874 46899998


Q ss_pred             c
Q psy16256         73 A   73 (74)
Q Consensus        73 ~   73 (74)
                      +
T Consensus       161 e  161 (161)
T 4eld_A          161 E  161 (161)
T ss_dssp             C
T ss_pred             C
Confidence            6

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=99.73  E-value=3.3e-17  Score=98.13  Aligned_cols=62  Identities=21%  Similarity=0.219  Sum_probs=52.7

Q ss_pred             CeEEEECCEEEEEEEEEeecCC---CeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSDS---KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~~---~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      +.|++++|.|+|+|+++.....   ...+++|.|+|.||.+||.+.++|+| +||+|+|++||.++
T Consensus        32 i~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~-~~GvL~I~lpK~~~   96 (102)
T 4fei_A           32 LALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASL-AGGVLTVRFEKLRP   96 (102)
T ss_dssp             CEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEE-ETTEEEEEEEBSSC
T ss_pred             EEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEE-ECCEEEEEEEccCc
Confidence            4689999999999998542211   13567999999999999999999999 89999999999875

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=99.72  E-value=1.1e-17  Score=102.95  Aligned_cols=68  Identities=15%  Similarity=0.208  Sum_probs=56.3

Q ss_pred             CeEEEEC-CEEEEEEEEEeecCCCeEEE----EEEEEEECCCCCCcCCc-EEEeCCCCEEEEEEeCCCCCCCCeEEecc
Q psy16256          1 MLFGSPN-DFPIVHAKHEEKSDSKSVYR----EYNREFLLPKGTNPESI-KSSLSKDGVLTVEAPLPALGAPEKLIPIA   73 (74)
Q Consensus         1 ~~~~v~~-~~L~I~g~~~~~~~~~~~~r----~f~R~~~LP~~vd~~~i-~A~l~~dGvL~I~~Pk~~~~~~~r~I~I~   73 (74)
                      +.|++++ |.|+|+|++....+.+|..+    +|.|+|.||.+||.++| +|+| +||+|+|++||.+..   + |+|+
T Consensus        50 i~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~~-~~GvL~I~lPK~~~~---~-I~Ie  123 (123)
T 3aab_A           50 IKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKY-ENGVLTIRIPIAGTS---V-FKFE  123 (123)
T ss_dssp             CEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEEE-ETTEEEEEEEGGGEE---C-SCCC
T ss_pred             EEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeEE-cCCEEEEEEEcCCCC---c-cccC
Confidence            4688999 99999999865443345443    89999999999999999 9999 899999999998742   2 7774

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=99.72  E-value=4.8e-17  Score=96.61  Aligned_cols=62  Identities=18%  Similarity=0.404  Sum_probs=51.3

Q ss_pred             CeEEEECCEEEEEEEEEeecC-C--CeE-----EEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256          1 MLFGSPNDFPIVHAKHEEKSD-S--KSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus         1 ~~~~v~~~~L~I~g~~~~~~~-~--~~~-----~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      +.|++++|.|+|+|++..... +  +|.     ++.|.|+|.||.+||.+.|+|+| +||+|+|++||.+.
T Consensus        30 i~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~-~~GvL~I~~pK~~~   99 (100)
T 3gla_A           30 IEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAG-RNGVLEIRIPKRPA   99 (100)
T ss_dssp             CEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCEEEE-ETTEEEEEEEBC--
T ss_pred             EEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeEEEE-eCCEEEEEEecCCC
Confidence            468999999999999865432 1  343     35899999999999999999999 89999999999864

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=99.72  E-value=1.1e-17  Score=106.58  Aligned_cols=71  Identities=24%  Similarity=0.360  Sum_probs=57.8

Q ss_pred             eEEE-ECCEEEEEEEEEeecC--C-CeE-----EEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCCC-CCCeEEe
Q psy16256          2 LFGS-PNDFPIVHAKHEEKSD--S-KSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALG-APEKLIP   71 (74)
Q Consensus         2 ~~~v-~~~~L~I~g~~~~~~~--~-~~~-----~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~~-~~~r~I~   71 (74)
                      .|++ +++.|+|+|++....+  + +|.     +++|.|+|.||.+||.+.|+|+| +||+|+|++||.... .+.|+|+
T Consensus        70 ~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~-~nGvL~I~lPK~~~~~~~~~~I~  148 (151)
T 1gme_A           70 KVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL-ENGVLTVTVPKAEVKKPEVKAIQ  148 (151)
T ss_dssp             EEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEE-ETTEEEEEEECCCCCTTCCCCCC
T ss_pred             EEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceEEEE-ECCEEEEEEEccCcCCCCCeEee
Confidence            5788 4689999999865432  2 343     35799999999999999999999 899999999998753 3568898


Q ss_pred             cc
Q psy16256         72 IA   73 (74)
Q Consensus        72 I~   73 (74)
                      |+
T Consensus       149 I~  150 (151)
T 1gme_A          149 IS  150 (151)
T ss_dssp             CC
T ss_pred             eC
Confidence            86

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=99.70  E-value=1.4e-17  Score=116.84  Aligned_cols=62  Identities=19%  Similarity=0.345  Sum_probs=55.2

Q ss_pred             eEEEECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256          2 LFGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      .|++++|.|+|+|+++...++++.+++|.|+|.||++||.++|+|+|..||+|+|++||.++
T Consensus       129 ~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~nGVL~I~lPK~~~  190 (314)
T 2bol_A          129 TIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEP  190 (314)
T ss_dssp             EEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSSSEEEEEEEBSSC
T ss_pred             EEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCCCEEEEEEeccCc
Confidence            58999999999999875555567889999999999999999999999339999999999875

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=99.66  E-value=5.6e-17  Score=113.77  Aligned_cols=59  Identities=24%  Similarity=0.389  Sum_probs=48.3

Q ss_pred             eEEEECCEEEEEEEEEeecCC----CeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCC
Q psy16256          2 LFGSPNDFPIVHAKHEEKSDS----KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP   61 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~~~~~~----~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~   61 (74)
                      .|++++|.|+|+|+++.+.+.    .+.+++|+|+|.||++||.++|+|+| +||||+|++||.
T Consensus       251 ~V~v~~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~-~dGvL~i~~Pk~  313 (314)
T 2bol_A          251 KVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEI-VDGLMVVEAPLF  313 (314)
T ss_dssp             EEEESSSEEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEE-ETTEEEEEEEEE
T ss_pred             EEEEECCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEE-eCCEEEEEEecC
Confidence            588999999999998765433    25678999999999999999999999 799999999985

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=97.43  E-value=0.00021  Score=42.39  Aligned_cols=53  Identities=13%  Similarity=0.083  Sum_probs=40.0

Q ss_pred             EEEECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256          3 FGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus         3 ~~v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      |++.++.|.|++...   + +   ..|...+.|+..||++..++++ .+|.|+|+++|.+.
T Consensus        37 v~~~~~~l~v~~~~~---~-~---~~y~~~~~L~~~I~~e~s~~~~-~~~~l~i~L~K~~~   89 (114)
T 1rl1_A           37 VEFSEKELSALVKLP---S-G---EDYNLKLELLHPIIPEQSTFKV-LSTKIEIKLKKPEA   89 (114)
T ss_dssp             EECSSSCEEEEEECT---T-S---SEEEEEECBSSCCCGGGEEEEE-CSSSEEEEEECSSC
T ss_pred             EEEEcCEEEEEEEeC---C-C---cEEEEEeeCCCcCCccccEEEE-ECCEEEEEEEcCCC
Confidence            444555555555321   1 1   2688899999999999999999 78999999999864

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=97.35  E-value=0.00012  Score=41.77  Aligned_cols=53  Identities=9%  Similarity=0.009  Sum_probs=40.1

Q ss_pred             EEEECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256          3 FGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus         3 ~~v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      |++.++.|.|++...   + +   ..|...+.|+..||++..++++ .+|.|.|+++|.++
T Consensus        30 v~~~~~~l~v~~~~~---~-~---~~y~~~~~L~~~I~~~~s~~~~-~~~~l~i~L~K~~~   82 (92)
T 2xcm_C           30 IDFGEQILSVVIEVP---G-E---DAYYLQPRLFGKIIPDKCKYEV-LSTKIEICLAKADI   82 (92)
T ss_dssp             EEECSSBEEEEECCT---T-S---CCEEECCBBSSCBCGGGCEEEE-CSSCEEEEEEBSSS
T ss_pred             EEEECCEEEEEEEcC---C-C---cEEEEeeEcCCccCchhEEEEE-ECCEEEEEEEcCCC
Confidence            455555666655321   1 1   2578889999999999999999 79999999999864

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=95.74  E-value=0.012  Score=36.66  Aligned_cols=62  Identities=10%  Similarity=0.163  Sum_probs=42.5

Q ss_pred             eEEEECCEEEEEEEEE--e--ecC------C-CeEEE--EEEEEEECCCCC-CcCCcEEEeCC-CCEEEEEEeCCCC
Q psy16256          2 LFGSPNDFPIVHAKHE--E--KSD------S-KSVYR--EYNREFLLPKGT-NPESIKSSLSK-DGVLTVEAPLPAL   63 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~--~--~~~------~-~~~~r--~f~R~~~LP~~v-d~~~i~A~l~~-dGvL~I~~Pk~~~   63 (74)
                      .++-++..|.|.-+-.  .  .++      + -|..+  -|.=++.||..| |.+.-+|+|+. +|.|+|++||..+
T Consensus         7 ~itQd~e~viV~Ik~P~~~~~~sdiei~v~~~~F~F~~~PYyLRL~LP~~V~e~~~~kA~YD~d~~~~~VtLpK~~~   83 (134)
T 2k8q_A            7 SITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLSPYYLRLRFPHELIDDERSTAQYDSKDECINVKVAKLNK   83 (134)
T ss_dssp             EEEECSSEEEEEEECCSSCCCSSSCCCEECSSSEEECSSSSCEEECCSSCEECCSSCEEEEETTTTEEEEEEEESST
T ss_pred             EEEECCCEEEEEEEcCccccCccccEEEEeCCEEEEecCCeEEEecCCCeeecCCCcceeEeccCCEEEEEEeCCCC
Confidence            3566777777776532  1  111      1 12222  234459999999 99999999973 7999999999764

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=95.33  E-value=0.028  Score=34.29  Aligned_cols=62  Identities=11%  Similarity=0.180  Sum_probs=41.8

Q ss_pred             eEEEECCEEEEEEEEEe----ecCC-----C--eEE--EEEEEEEECCCCC-CcCCcEEEeC-CCCEEEEEEeCCCC
Q psy16256          2 LFGSPNDFPIVHAKHEE----KSDS-----K--SVY--REYNREFLLPKGT-NPESIKSSLS-KDGVLTVEAPLPAL   63 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~~----~~~~-----~--~~~--r~f~R~~~LP~~v-d~~~i~A~l~-~dGvL~I~~Pk~~~   63 (74)
                      .++-+++.|.|.-+-..    .++-     +  |..  .-|.=++.||..| |.+.-+|+|+ ++|.++|++||..+
T Consensus        21 ~itQDdefv~I~I~~p~ir~~a~~~ei~vd~~~F~F~~~PYyLRL~lP~~vved~~~~A~YD~d~g~~~v~lpK~~~   97 (115)
T 3eud_A           21 SITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLSPYYLRLRFPHELIDDERSTAQYDSKDECINVKVAKLNK   97 (115)
T ss_dssp             EEEECSSEEEEEEECCSCCCCSSSCEEEEETTEEEEEETTEEEEEECSSCEECSTTCEEEEETTTTEEEEEEEESST
T ss_pred             EEEECCCEEEEEEEcCceecccCccEEEEeCCEEEEecCCeEEEEecCcceecCCCcceEEeCCCcEEEEEEcCCcC
Confidence            35667777777765321    1111     1  222  2244469999998 7788899996 57999999999875

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=90.92  E-value=0.5  Score=26.36  Aligned_cols=33  Identities=18%  Similarity=0.330  Sum_probs=28.1

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA   62 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~   62 (74)
                      .|.=.+.|| ++++++|+-.+ .+|.|+|++-+..
T Consensus         8 ~~~v~~dlP-G~~~edi~V~v-~~~~L~I~g~~~~   40 (85)
T 3q9p_A            8 RWRVSLDVN-HFAPDELTVKT-KDGVVEITGKHAA   40 (85)
T ss_dssp             EEEEEEECT-TTCCSEEEEEE-ETTEEEEEEEEC-
T ss_pred             EEEEEEECC-CCChHHEEEEE-ECCEEEEEEEEcc
Confidence            466778996 89999999999 7999999998764

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=89.73  E-value=0.46  Score=26.72  Aligned_cols=32  Identities=16%  Similarity=0.268  Sum_probs=27.4

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP   61 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~   61 (74)
                      .|.=.+.|| +++.++|+-.+ .+|.|+|++-+.
T Consensus         7 ~~~v~~dlP-G~~~edi~V~v-~~~~L~I~g~~~   38 (90)
T 2y1y_A            7 RFSVNLDVK-HFSPEELKVKV-LGDVIEVHGKHE   38 (90)
T ss_dssp             CEEEEEECT-TSCGGGEEEEE-ETTEEEEEEEEE
T ss_pred             EEEEEEECC-CCcHHHeEEEE-ECCEEEEEEEEe
Confidence            356678897 99999999999 799999999764

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=89.35  E-value=0.69  Score=26.50  Aligned_cols=33  Identities=21%  Similarity=0.356  Sum_probs=28.6

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA   62 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~   62 (74)
                      .|.=.+.|| +++.++|+-.+ .+|.|+|++-+..
T Consensus        17 ~~~v~~~lP-G~~~edi~v~~-~~~~L~I~g~~~~   49 (102)
T 4fei_A           17 HLDLLLDVP-GVDAGTLALAE-DGGQLTVSGERPG   49 (102)
T ss_dssp             EEEEEEECT-TCCGGGCEEEE-ETTEEEEEEEECC
T ss_pred             EEEEEEECC-CCchHhEEEEE-ECCEEEEEEEEec
Confidence            577788997 89999999999 7999999987643

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=89.29  E-value=0.5  Score=27.21  Aligned_cols=33  Identities=15%  Similarity=0.128  Sum_probs=28.1

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA   62 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~   62 (74)
                      .|.=.+.|| ++++++|+-.+ .+|.|+|++-+..
T Consensus        12 ~~~v~~dlP-G~~~edI~V~v-~~~~L~I~g~~~~   44 (101)
T 2wj5_A           12 YFSVLLDVK-HFSPEEISVKV-VGDHVEVHARHEE   44 (101)
T ss_dssp             CEEEEEECT-TSCGGGEEEEE-ETTEEEEEEEEEE
T ss_pred             EEEEEEECC-CCcHHHeEEEE-ECCEEEEEEEEec
Confidence            355678997 99999999999 7999999998754

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=89.23  E-value=0.8  Score=25.90  Aligned_cols=33  Identities=21%  Similarity=0.456  Sum_probs=28.4

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA   62 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~   62 (74)
                      .|.=.+.|| +++.++|+-.+ .+|.|+|++-+..
T Consensus        15 ~~~v~~~lP-G~~~edi~v~~-~~~~L~I~g~~~~   47 (100)
T 3gla_A           15 HFVLYADLP-GIDPSQIEVQM-DKGILSIRGERKS   47 (100)
T ss_dssp             EEEEEEECT-TSCGGGCEEEE-ETTEEEEEEEECC
T ss_pred             EEEEEEECC-CCCHHHEEEEE-ECCEEEEEEEEcC
Confidence            466678997 79999999999 7999999987764

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=88.51  E-value=0.81  Score=26.55  Aligned_cols=32  Identities=6%  Similarity=0.174  Sum_probs=27.8

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP   61 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~   61 (74)
                      .|.=.+.|| ++++++|+-.+ .+|.|+|++-+.
T Consensus        13 ~~~v~~dlP-G~~~edi~V~v-~~~~L~I~g~~~   44 (106)
T 3l1e_A           13 KFVIFLDVK-HFSPEDLTVKV-QEDFVEIHGKHN   44 (106)
T ss_dssp             EEEEEEECT-TSCGGGEEEEE-ETTEEEEEEEEE
T ss_pred             EEEEEEECC-CCChHHEEEEE-ECCEEEEEEEEc
Confidence            577788996 89999999999 799999999653

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=86.46  E-value=1.7  Score=25.56  Aligned_cols=34  Identities=26%  Similarity=0.162  Sum_probs=29.5

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCC-CEEEEEEeCCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKD-GVLTVEAPLPAL   63 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~d-GvL~I~~Pk~~~   63 (74)
                      .|.=.+.|| +++.++|+-.+ .+ |.|+|++-+...
T Consensus        35 ~~~v~~~lP-G~~~edi~V~v-~~~~~L~I~g~~~~~   69 (123)
T 3aab_A           35 YLVVVADLA-GFNKEKIKARV-SGQNELIIEAEREIT   69 (123)
T ss_dssp             EEEEEEECC-SCCGGGCEEEE-ETTTEEEEEEECCCC
T ss_pred             EEEEEEECC-CCCHHHEEEEE-eCCCEEEEEEEEecc
Confidence            577788997 79999999999 67 999999997653

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=83.14  E-value=1.7  Score=30.60  Aligned_cols=32  Identities=13%  Similarity=0.270  Sum_probs=26.7

Q ss_pred             EEEEEEEECCCCCCcCC-cEEEeCCCCEEEEEEe
Q psy16256         27 REYNREFLLPKGTNPES-IKSSLSKDGVLTVEAP   59 (74)
Q Consensus        27 r~f~R~~~LP~~vd~~~-i~A~l~~dGvL~I~~P   59 (74)
                      +.|+|.+.||...-.-. ..|.| +||.|.|+.-
T Consensus       335 g~~rR~i~LP~~L~~~~v~~A~~-~~~~L~i~~~  367 (374)
T 3igf_A          335 GDQRRNIFLPPALSGRPITGAKF-QNNYLIISFL  367 (374)
T ss_dssp             TTEEEEEECCTTTTTCCEEEEEE-ETTEEEEEEC
T ss_pred             CCEeecccCCHHHcCCCccccEE-ECCEEEEEEe
Confidence            46999999999877664 56899 8999999874

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=81.42  E-value=2  Score=27.23  Aligned_cols=33  Identities=15%  Similarity=0.260  Sum_probs=28.9

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA   62 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~   62 (74)
                      .|.=.+.|| ++++++|+-++ .+|.|+|++-+..
T Consensus        74 ~~~v~~dlP-G~~~edI~V~v-~~~~L~I~g~~~~  106 (175)
T 2klr_A           74 RFSVNLDVK-HFSPEELKVKV-LGDVIEVHGKHEE  106 (175)
T ss_dssp             EEEEEECCS-SCCGGGEEEEE-ETTEEEEEEEEEE
T ss_pred             eEEEEEECC-CCChHHEEEEE-ECCEEEEEEEEcc
Confidence            688889996 99999999999 7999999997643

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=80.99  E-value=3.6  Score=25.15  Aligned_cols=35  Identities=23%  Similarity=0.227  Sum_probs=29.3

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      .|.=.+.|| +++.++|+-.+.+++.|+|++-+...
T Consensus        54 ~~~v~~dlP-Gv~kedI~V~v~~~~~L~I~g~~~~~   88 (151)
T 1gme_A           54 AHVFKADLP-GVKKEEVKVEVEDGNVLVVSGERTKE   88 (151)
T ss_dssp             EEEEEEECT-TCCGGGEEEEEETTTEEEEEECCCCC
T ss_pred             EEEEEEECC-CCChHHEEEEEecCCEEEEEEEEccc
Confidence            577789997 89999999999445799999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	74
d1gmea_	150	b.15.1.1 (A:) Small heat shock protein {Wheat (Tri	3e-04
d1shsa_	115	b.15.1.1 (A:) Small heat shock protein {Archaeon M	0.002

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 34.4 bits (78), Expect = 3e-04
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 7   NDFPIVHAKHEEKSDSKSVY-------REYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
           N   +   + +EK D    +        ++ R F L +    E +K+ L ++GVLTV  P
Sbjct: 76  NVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL-ENGVLTVTVP 134

Query: 60  LPALGAPE-KLIPIA 73
              +  PE K I I+
Sbjct: 135 KAEVKKPEVKAIQIS 149

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 32.3 bits (73), Expect = 0.002
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 26  YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPI 72
             E  R   LP     E+  +   ++GVL+V  P        K I I
Sbjct: 70  EEEIYRTIKLPATVKEENASAKF-ENGVLSVILPKAESSIK-KGINI 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	74
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	99.7
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	99.68
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	87.85
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	85.55
d1u00a2	115	Chaperone protein hscA (Hsc66) {Escherichia coli [	83.23
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	80.33

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.70  E-value=1.2e-17  Score=100.09  Aligned_cols=70  Identities=24%  Similarity=0.257  Sum_probs=58.0

Q ss_pred             eEEEECCEEEEEEEEEeecC--C-Ce------EEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCCCCCCeEEec
Q psy16256          2 LFGSPNDFPIVHAKHEEKSD--S-KS------VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPI   72 (74)
Q Consensus         2 ~~~v~~~~L~I~g~~~~~~~--~-~~------~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~~~~~r~I~I   72 (74)
                      .|+++++.|+|+|++.....  . .+      .++.|.|+|.||.++|.+.++|.| +||+|+|++||.+. ..+|.|+|
T Consensus        37 ~v~v~~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~A~~-~nGvL~I~lpK~~~-~~~~~I~I  114 (115)
T d1shsa_          37 ILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF-ENGVLSVILPKAES-SIKKGINI  114 (115)
T ss_dssp             EEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEE-ETTEEEEEEEBCGG-GCCEECCC
T ss_pred             EEEEECCEEEEEEEeccccccccccEEEEeeecccceEEEEecCCceeecceEEEE-ECCEEEEEEEeCCC-CCCceeee
Confidence            58899999999998754322  2 22      235899999999999999999999 89999999999874 56899998


Q ss_pred             c
Q psy16256         73 A   73 (74)
Q Consensus        73 ~   73 (74)
                      +
T Consensus       115 e  115 (115)
T d1shsa_         115 E  115 (115)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.68  E-value=6.3e-17  Score=101.05  Aligned_cols=71  Identities=24%  Similarity=0.367  Sum_probs=55.5

Q ss_pred             eEEEEC-CEEEEEEEEEeecC---CCeE-----EEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCCC-CCCeEEe
Q psy16256          2 LFGSPN-DFPIVHAKHEEKSD---SKSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALG-APEKLIP   71 (74)
Q Consensus         2 ~~~v~~-~~L~I~g~~~~~~~---~~~~-----~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~~-~~~r~I~   71 (74)
                      .|++++ +.|+|+|++.....   .++.     ++.|+|+|.||++||.++|+|+| +||+|+|++||.++. .+.+.|+
T Consensus        69 ~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~-~nGvL~I~lpK~~~~~~~~~~I~  147 (150)
T d1gmea_          69 KVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL-ENGVLTVTVPKAEVKKPEVKAIQ  147 (150)
T ss_dssp             EEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEE-ETTEEEEEEECCCCCTTCCCCCC
T ss_pred             EEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeeceeEEEE-ECCEEEEEEEcCCcCCCCceEEe
Confidence            577876 47899998754332   1233     34799999999999999999999 899999999998753 4567787


Q ss_pred             cc
Q psy16256         72 IA   73 (74)
Q Consensus        72 I~   73 (74)
                      |+
T Consensus       148 I~  149 (150)
T d1gmea_         148 IS  149 (150)
T ss_dssp             CC
T ss_pred             cc
Confidence            75

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.85  E-value=0.47  Score=25.10  Aligned_cols=35  Identities=17%  Similarity=0.227  Sum_probs=31.0

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      .|.-.+.|...|+++..+.++ .++.+.|+|-|.++
T Consensus        48 ~y~~~~~L~~~I~p~~s~~~~-~~~kiei~L~K~~~   82 (92)
T d1rl1a_          48 DYNLKLELLHPIIPEQSTFKV-LSTKIEIKLKKPEA   82 (92)
T ss_dssp             EEEEEECBSSCCCGGGEEEEE-CSSSEEEEEECSSC
T ss_pred             EEEEEEEcCcccCchhcEEEE-eCCEEEEEEEECCC
Confidence            467778999999999999999 68999999999764

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.55  E-value=0.97  Score=24.77  Aligned_cols=33  Identities=24%  Similarity=0.244  Sum_probs=29.0

Q ss_pred             EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256         28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA   62 (74)
Q Consensus        28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~   62 (74)
                      +|.=.+.|| +++.+++.-.+ .++.|+|.+-+..
T Consensus        21 ~~~i~~~lP-G~~~edi~v~v-~~~~l~I~~~~~~   53 (115)
T d1shsa_          21 HIKVIAWLP-GVNKEDIILNA-VGDTLEIRAKRSP   53 (115)
T ss_dssp             EEEEEEECT-TCCGGGEEEEE-ETTEEEEEEECCC
T ss_pred             EEEEEEECC-CCCHHHEEEEE-ECCEEEEEEEecc
Confidence            577789997 89999999999 7999999997754

>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Heat shock protein 70kD (HSP70), peptide-binding domain
superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain
family: Heat shock protein 70kD (HSP70), peptide-binding domain
domain: Chaperone protein hscA (Hsc66)
species: Escherichia coli [TaxId: 562]

Probab=83.23  E-value=0.72  Score=25.99  Aligned_cols=37  Identities=24%  Similarity=0.321  Sum_probs=26.5

Q ss_pred             CCCCCcCCcEEEeCCCCEEEEEEeCCCCCCCCeEEecc
Q psy16256         36 PKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPIA   73 (74)
Q Consensus        36 P~~vd~~~i~A~l~~dGvL~I~~Pk~~~~~~~r~I~I~   73 (74)
                      |.+.-.=.|+-.++.||+|+|+|--... .....|.|+
T Consensus        75 p~G~~~I~Vtf~id~nGiL~V~A~d~~t-g~~~~i~i~  111 (115)
T d1u00a2          75 PAGGAHIRVTFQVDADGLLSVTAMEKST-GVEASIQVK  111 (115)
T ss_dssp             STTCSCEEEEEEECTTCCEEEEEEETTT-CCEEEEEEC
T ss_pred             ccccccEEEEEEccCCceEEEEEEECCC-CCEeEEEEe
Confidence            4445545678889999999999986653 456667665

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.33  E-value=2.5  Score=22.82  Aligned_cols=54  Identities=9%  Similarity=-0.085  Sum_probs=38.7

Q ss_pred             EEEECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256          3 FGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL   63 (74)
Q Consensus         3 ~~v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~   63 (74)
                      ++++.+.+.+++.-.   ..+   ..|.=.+.|...|+++.-+.++ .++-+.|++-|+++
T Consensus        29 v~i~~~~l~~~~~~~---~~~---~~y~l~~~L~~~I~~~~s~~~v-~~~kiei~L~K~~~   82 (110)
T d1ejfa_          29 VNFEKSKLTFSCLGG---SDN---FKHLNEIDLFHCIDPNDSKHKR-TDRSILCCLRKGES   82 (110)
T ss_dssp             EEEETTEEEEEEEET---TTT---EEEEEEEEBSSCEEEEEEEEEE-CSSCEEEEEEESST
T ss_pred             EEEEeceEEEEEEec---CCC---ceEEEEEEcccCcccCccEEEE-eCCEEEEEEEEcCC
Confidence            556666666665421   112   1345567899999999999999 68899999999764