Psyllid ID: psy1629


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70-------
MNCVRWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR
cccEEEEEccccccccEEcEEEEEEEcccccHHHHHHHHcccccccccccccccccccccccccEEEEcEEEEEccc
HHHHHHcccccccccccEEEcccEcccccEcHHHHHHHHHccccccccccccccEEccccccccccccccEEEEccc
mncvrwvrpgnnfnpgfQFFHKIQvngenehplytflksscpptrdgyrtpvtdlyyrpvrvsdVRWNFEKFLVDHR
mncvrwvrpgnnfnpgFQFFHKIQVNGENEHPLYTFLksscpptrdgyrtpvtdlyyrpvrvsdvRWNFEKFLVDHR
MNCVRWVRpgnnfnpgfqffHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR
**CVRWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLV***
*NCVRWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTR*GYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR
MNCVRWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR
MNCVRWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDH*
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNCVRWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query77 2.2.26 [Sep-21-2011]
P37141226 Glutathione peroxidase 3 yes N/A 0.948 0.323 0.527 7e-17
P46412226 Glutathione peroxidase 3 yes N/A 0.922 0.314 0.527 2e-16
P23764226 Glutathione peroxidase 3 yes N/A 0.922 0.314 0.527 2e-16
Q64625221 Glutathione peroxidase 6 no N/A 0.909 0.316 0.535 3e-16
P22352226 Glutathione peroxidase 3 yes N/A 0.909 0.309 0.549 5e-16
Q4AEH5226 Glutathione peroxidase 3 N/A N/A 0.909 0.309 0.549 6e-16
Q4AEH3226 Glutathione peroxidase 3 N/A N/A 0.922 0.314 0.541 6e-16
Q4AEH4226 Glutathione peroxidase 3 N/A N/A 0.922 0.314 0.541 6e-16
Q5RFG3226 Glutathione peroxidase 3 N/A N/A 0.909 0.309 0.549 6e-16
Q91WR8221 Glutathione peroxidase 6 no N/A 0.909 0.316 0.507 8e-16
>sp|P37141|GPX3_BOVIN Glutathione peroxidase 3 OS=Bos taurus GN=GPX3 PE=2 SV=2 Back     alignment and function desciption
 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 1/74 (1%)

Query: 1   MNCVRWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPV 60
           +  +++VRPG  F P FQ F K  VNGE E   YTFLK+SCPPT +   +P   L++ P+
Sbjct: 116 LATLKYVRPGGGFTPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGSP-DRLFWEPM 174

Query: 61  RVSDVRWNFEKFLV 74
           +V D+RWNFEKFLV
Sbjct: 175 KVHDIRWNFEKFLV 188




Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.
Bos taurus (taxid: 9913)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 9
>sp|P46412|GPX3_MOUSE Glutathione peroxidase 3 OS=Mus musculus GN=Gpx3 PE=2 SV=2 Back     alignment and function description
>sp|P23764|GPX3_RAT Glutathione peroxidase 3 OS=Rattus norvegicus GN=Gpx3 PE=2 SV=2 Back     alignment and function description
>sp|Q64625|GPX6_RAT Glutathione peroxidase 6 OS=Rattus norvegicus GN=Gpx6 PE=2 SV=1 Back     alignment and function description
>sp|P22352|GPX3_HUMAN Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 PE=1 SV=2 Back     alignment and function description
>sp|Q4AEH5|GPX3_HYLLA Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 PE=2 SV=2 Back     alignment and function description
>sp|Q4AEH3|GPX3_CEBAP Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 PE=2 SV=2 Back     alignment and function description
>sp|Q4AEH4|GPX3_MACFU Glutathione peroxidase 3 OS=Macaca fuscata fuscata GN=GPX3 PE=2 SV=2 Back     alignment and function description
>sp|Q5RFG3|GPX3_PONPY Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3 PE=2 SV=3 Back     alignment and function description
>sp|Q91WR8|GPX6_MOUSE Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query77
321450289 205 hypothetical protein DAPPUDRAFT_270542 [ 0.987 0.370 0.610 2e-21
356984433 217 glutathione peroxidase, partial [Reishia 1.0 0.354 0.545 4e-19
337730424150 GPx isotype 2 [Perinereis nuntia] 0.987 0.506 0.545 1e-18
405952196153 Glutathione peroxidase 3 [Crassostrea gi 0.961 0.483 0.519 1e-17
321457418170 hypothetical protein DAPPUDRAFT_114529 [ 0.987 0.447 0.571 1e-17
260803132 215 hypothetical protein BRAFLDRAFT_121595 [ 0.974 0.348 0.558 4e-17
406829591 247 GPX3 [Thamnophis elegans] 0.961 0.299 0.52 2e-16
241604286123 glutathione peroxidase, putative [Ixodes 0.987 0.617 0.545 2e-16
260803128163 hypothetical protein BRAFLDRAFT_121593 [ 0.974 0.460 0.52 2e-16
111572533 232 selenium-dependent glutathione peroxidas 0.922 0.306 0.513 3e-16
>gi|321450289|gb|EFX62365.1| hypothetical protein DAPPUDRAFT_270542 [Daphnia pulex] Back     alignment and taxonomy information
 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 60/77 (77%), Gaps = 1/77 (1%)

Query: 1   MNCVRWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPV 60
           +N +R+VRPGNNF P  + F KI VNG+NEHPL+++LKS CPPTRD Y    T LYY  +
Sbjct: 113 LNGIRYVRPGNNFQPQMKLFKKIDVNGDNEHPLFSYLKSCCPPTRD-YFQEATKLYYTKI 171

Query: 61  RVSDVRWNFEKFLVDHR 77
           RV+D+RWNFEKFLV+ +
Sbjct: 172 RVNDIRWNFEKFLVNRQ 188




Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|356984433|gb|AET43964.1| glutathione peroxidase, partial [Reishia clavigera] Back     alignment and taxonomy information
>gi|337730424|gb|AEI70683.1| GPx isotype 2 [Perinereis nuntia] Back     alignment and taxonomy information
>gi|405952196|gb|EKC20036.1| Glutathione peroxidase 3 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|321457418|gb|EFX68505.1| hypothetical protein DAPPUDRAFT_114529 [Daphnia pulex] Back     alignment and taxonomy information
>gi|260803132|ref|XP_002596445.1| hypothetical protein BRAFLDRAFT_121595 [Branchiostoma floridae] gi|229281701|gb|EEN52457.1| hypothetical protein BRAFLDRAFT_121595 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|406829591|gb|AFS63888.1| GPX3 [Thamnophis elegans] Back     alignment and taxonomy information
>gi|241604286|ref|XP_002405868.1| glutathione peroxidase, putative [Ixodes scapularis] gi|215502580|gb|EEC12074.1| glutathione peroxidase, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|260803128|ref|XP_002596443.1| hypothetical protein BRAFLDRAFT_121593 [Branchiostoma floridae] gi|229281699|gb|EEN52455.1| hypothetical protein BRAFLDRAFT_121593 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|111572533|gb|ABH10623.1| selenium-dependent glutathione peroxidase [Unio tumidus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query77
WB|WBGene00007517224 gpx-3 [Caenorhabditis elegans 0.675 0.232 0.618 3.4e-13
WB|WBGene00007516223 gpx-5 [Caenorhabditis elegans 0.675 0.233 0.545 1.2e-12
UNIPROTKB|G3X8D7224 Bt.99682 "Glutathione peroxida 0.909 0.312 0.450 8.2e-12
UNIPROTKB|P37141226 GPX3 "Glutathione peroxidase 3 0.909 0.309 0.450 8.2e-12
ZFIN|ZDB-GENE-070222-3222 gpx3 "glutathione peroxidase 3 0.974 0.337 0.36 1e-11
UNIPROTKB|J9P028153 GPX3 "Glutathione peroxidase" 0.675 0.339 0.566 1.3e-11
MGI|MGI:1922762221 Gpx6 "glutathione peroxidase 6 0.675 0.235 0.528 1.3e-11
MGI|MGI:105102226 Gpx3 "glutathione peroxidase 3 0.675 0.230 0.547 1.7e-11
RGD|628789221 Gpx6 "glutathione peroxidase 6 0.675 0.235 0.547 1.7e-11
RGD|69224226 Gpx3 "glutathione peroxidase 3 0.675 0.230 0.547 1.7e-11
WB|WBGene00007517 gpx-3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 34/55 (61%), Positives = 39/55 (70%)

Query:    22 KIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTD-LYYRPVRVSDVRWNFEKFLVD 75
             KI VNG+N HPLY F+K SCP T D  +   TD L Y PVR SD+ WNFEKFL+D
Sbjct:   139 KIDVNGDNHHPLYEFVKESCPQTVD--KIGKTDELMYNPVRPSDITWNFEKFLID 191




GO:0016209 "antioxidant activity" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0004602 "glutathione peroxidase activity" evidence=IEA
GO:0006979 "response to oxidative stress" evidence=IEA
WB|WBGene00007516 gpx-5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|G3X8D7 Bt.99682 "Glutathione peroxidase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P37141 GPX3 "Glutathione peroxidase 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070222-3 gpx3 "glutathione peroxidase 3 (plasma)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J9P028 GPX3 "Glutathione peroxidase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1922762 Gpx6 "glutathione peroxidase 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
MGI|MGI:105102 Gpx3 "glutathione peroxidase 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|628789 Gpx6 "glutathione peroxidase 6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|69224 Gpx3 "glutathione peroxidase 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P37141GPX3_BOVIN1, ., 1, 1, ., 1, ., 90.52700.94800.3230yesN/A
Q95003GPX3_CAEEL1, ., 1, 1, ., 1, ., 90.51940.96100.3303yesN/A
P22352GPX3_HUMAN1, ., 1, 1, ., 1, ., 90.54920.90900.3097yesN/A
P46412GPX3_MOUSE1, ., 1, 1, ., 1, ., 90.52770.92200.3141yesN/A
P23764GPX3_RAT1, ., 1, 1, ., 1, ., 90.52770.92200.3141yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.11.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query77
cd00340152 cd00340, GSH_Peroxidase, Glutathione (GSH) peroxid 6e-16
COG0386162 COG0386, BtuE, Glutathione peroxidase [Posttransla 7e-15
PRK10606183 PRK10606, btuE, putative glutathione peroxidase; P 2e-11
pfam00255108 pfam00255, GSHPx, Glutathione peroxidase 4e-10
PTZ00256183 PTZ00256, PTZ00256, glutathione peroxidase; Provis 4e-10
PTZ00056199 PTZ00056, PTZ00056, glutathione peroxidase; Provis 1e-09
PLN02412167 PLN02412, PLN02412, probable glutathione peroxidas 2e-07
PLN02399236 PLN02399, PLN02399, phospholipid hydroperoxide glu 6e-07
>gnl|CDD|238207 cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate Back     alignment and domain information
 Score = 66.8 bits (164), Expect = 6e-16
 Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 16/64 (25%)

Query: 12  NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEK 71
           N+   F  F KI VNGEN HPLY +LK   P                     D++WNF K
Sbjct: 83  NYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLG----------------KDIKWNFTK 126

Query: 72  FLVD 75
           FLVD
Sbjct: 127 FLVD 130


GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. Length = 152

>gnl|CDD|223463 COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|182585 PRK10606, btuE, putative glutathione peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|201117 pfam00255, GSHPx, Glutathione peroxidase Back     alignment and domain information
>gnl|CDD|173495 PTZ00256, PTZ00256, glutathione peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|240248 PTZ00056, PTZ00056, glutathione peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|166053 PLN02412, PLN02412, probable glutathione peroxidase Back     alignment and domain information
>gnl|CDD|178021 PLN02399, PLN02399, phospholipid hydroperoxide glutathione peroxidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 77
COG0386162 BtuE Glutathione peroxidase [Posttranslational mod 99.94
PRK10606183 btuE putative glutathione peroxidase; Provisional 99.9
KOG1651|consensus171 99.89
PF00255108 GSHPx: Glutathione peroxidase; InterPro: IPR000889 99.4
PTZ00056199 glutathione peroxidase; Provisional 98.96
TIGR02540153 gpx7 putative glutathione peroxidase Gpx7. This mo 98.72
PTZ00256183 glutathione peroxidase; Provisional 98.69
PLN02399236 phospholipid hydroperoxide glutathione peroxidase 98.58
PLN02412167 probable glutathione peroxidase 98.47
cd00340152 GSH_Peroxidase Glutathione (GSH) peroxidase family 97.79
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
Probab=99.94  E-value=4.5e-27  Score=160.37  Aligned_cols=51  Identities=49%  Similarity=0.939  Sum_probs=45.5

Q ss_pred             CcccceeeeEeEEecCCCCCHHHHHHHhcCCCCCCCCCCcccccccCCCCCCCccccceEEeecCC
Q psy1629          12 NFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR   77 (77)
Q Consensus        12 ~f~v~Fp~f~Ki~VnG~~ahPLy~~Lk~~~~~~~~~~g~~~~~~~~~~~~~~~I~WNF~KFLVdrd   77 (77)
                      +|||+||||+||+|||++|||||+||+++++..   .+            ..+|+||||||||||+
T Consensus        86 ~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~---~~------------~~~IkWNFtKFLvdr~  136 (162)
T COG0386          86 NYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGK---LG------------GKDIKWNFTKFLVDRD  136 (162)
T ss_pred             ccCceeeeeeEEeecCCCCCcHHHHHHhcCCCC---cc------------CCccceeeEEEEEcCC
Confidence            689999999999999999999999999999732   12            2599999999999996



>PRK10606 btuE putative glutathione peroxidase; Provisional Back     alignment and domain information
>KOG1651|consensus Back     alignment and domain information
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 Back     alignment and domain information
>PTZ00056 glutathione peroxidase; Provisional Back     alignment and domain information
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7 Back     alignment and domain information
>PTZ00256 glutathione peroxidase; Provisional Back     alignment and domain information
>PLN02399 phospholipid hydroperoxide glutathione peroxidase Back     alignment and domain information
>PLN02412 probable glutathione peroxidase Back     alignment and domain information
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query77
2r37_A207 Crystal Structure Of Human Glutathione Peroxidase 3 4e-11
2he3_A208 Crystal Structure Of The Selenocysteine To Cysteine 1e-09
1gp1_A198 The Refined Structure Of The Selenoenzyme Glutathio 2e-09
2f8a_A208 Crystal Structure Of The Selenocysteine To Glycine 2e-08
2i3y_A215 Crystal Structure Of Human Glutathione Peroxidase 5 5e-08
3cmi_A171 Crystal Structure Of Glutathione-Dependent Phosphol 1e-04
2vup_A190 Crystal Structure Of A Type Ii Tryparedoxin-Dependa 2e-04
3dwv_A187 Glutathione Peroxidase-Type Tryparedoxin Peroxidase 3e-04
2rm5_A167 Glutathione Peroxidase-Type Tryparedoxin Peroxidase 3e-04
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3 (Selenocysteine To Glycine Mutant) Length = 207 Back     alignment and structure

Iteration: 1

Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 4 VRWVRXXXXXXXXXXXXHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVS 63 +++VR K VNGE E YTFLK+SCPPT + T L++ P++V Sbjct: 96 LKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTS-DRLFWEPMKVH 154 Query: 64 DVRWNFEKFLVD 75 D+RWNFEKFLV Sbjct: 155 DIRWNFEKFLVG 166
>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant Of Human Glutathionine Peroxidase 2 (Gpx2) Length = 208 Back     alignment and structure
>pdb|1GP1|A Chain A, The Refined Structure Of The Selenoenzyme Glutathione Peroxidase At 0.2-Nm Resolution Length = 198 Back     alignment and structure
>pdb|2F8A|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant Of Human Glutathione Peroxidase 1 Length = 208 Back     alignment and structure
>pdb|2I3Y|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 5 Length = 215 Back     alignment and structure
>pdb|3CMI|A Chain A, Crystal Structure Of Glutathione-Dependent Phospholipid Peroxidase Hyr1 From The Yeast Saccharomyces Cerevisiae Length = 171 Back     alignment and structure
>pdb|2VUP|A Chain A, Crystal Structure Of A Type Ii Tryparedoxin-Dependant Peroxidase From Trypanosoma Brucei Length = 190 Back     alignment and structure
>pdb|3DWV|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase, Oxidized Form Length = 187 Back     alignment and structure
>pdb|2RM5|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase, Oxidized Form Length = 167 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query77
2f8a_A208 Glutathione peroxidase 1; thioredoxin fold, struct 1e-25
2i3y_A215 Epididymal secretory glutathione peroxidase; thior 1e-24
2r37_A207 Glutathione peroxidase 3; plasma, structural genom 2e-24
2v1m_A169 Glutathione peroxidase; selenium, selenocysteine, 7e-16
2p5q_A170 Glutathione peroxidase 5; thioredoxin fold, oxidor 7e-16
3dwv_A187 Glutathione peroxidase-like protein; alpha beta, 3 1e-15
2vup_A190 Glutathione peroxidase-like protein; oxidoreductas 1e-15
3cmi_A171 Peroxiredoxin HYR1; thioredoxin-like fold, oxidore 2e-15
3kij_A180 Probable glutathione peroxidase 8; human PDI-perox 6e-15
2p31_A181 CL683, glutathione peroxidase 7; thioredoxin fold, 9e-15
2obi_A183 PHGPX, GPX-4, phospholipid hydroperoxide glutathio 2e-14
2gs3_A185 PHGPX, GPX-4, phospholipid hydroperoxide glutathio 2e-14
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A Length = 208 Back     alignment and structure
 Score = 92.8 bits (231), Expect = 1e-25
 Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 1   MNCVRWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRD---GYRTPVTDLYY 57
           +N +++VRPG  F P F  F K +VNG   HPL+ FL+ + P   D      T    + +
Sbjct: 103 LNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITW 162

Query: 58  RPVRVSDVRWNFEKFLVD 75
            PV  +DV WNFEKFLV 
Sbjct: 163 SPVCRNDVAWNFEKFLVG 180


>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} Length = 215 Back     alignment and structure
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} Length = 207 Back     alignment and structure
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A Length = 169 Back     alignment and structure
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A Length = 170 Back     alignment and structure
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidoreductase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A Length = 187 Back     alignment and structure
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} Length = 190 Back     alignment and structure
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} Length = 171 Back     alignment and structure
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} PDB: 3cyn_A Length = 180 Back     alignment and structure
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 181 Back     alignment and structure
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} Length = 183 Back     alignment and structure
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} Length = 185 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query77
2i3y_A215 Epididymal secretory glutathione peroxidase; thior 99.59
2r37_A207 Glutathione peroxidase 3; plasma, structural genom 99.5
2f8a_A208 Glutathione peroxidase 1; thioredoxin fold, struct 99.19
3dwv_A187 Glutathione peroxidase-like protein; alpha beta, 3 98.48
3kij_A180 Probable glutathione peroxidase 8; human PDI-perox 98.44
2p31_A181 CL683, glutathione peroxidase 7; thioredoxin fold, 98.12
2v1m_A169 Glutathione peroxidase; selenium, selenocysteine, 97.54
2vup_A190 Glutathione peroxidase-like protein; oxidoreductas 97.5
2gs3_A185 PHGPX, GPX-4, phospholipid hydroperoxide glutathio 97.4
3cmi_A171 Peroxiredoxin HYR1; thioredoxin-like fold, oxidore 97.35
2p5q_A170 Glutathione peroxidase 5; thioredoxin fold, oxidor 97.31
2obi_A183 PHGPX, GPX-4, phospholipid hydroperoxide glutathio 97.31
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} Back     alignment and structure
Probab=99.59  E-value=1.6e-15  Score=104.62  Aligned_cols=72  Identities=49%  Similarity=0.934  Sum_probs=57.9

Q ss_pred             eeeecCCCcccceeeeEeEEecCCCCCHHHHHHHhcCCCCCCCCCCcccccccCCCCCCCccccceEEeecCC
Q psy1629           5 RWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTPVTDLYYRPVRVSDVRWNFEKFLVDHR   77 (77)
Q Consensus         5 ~~vrpg~~f~v~Fp~f~Ki~VnG~~ahPLy~~Lk~~~~~~~~~~g~~~~~~~~~~~~~~~I~WNF~KFLVdrd   77 (77)
                      +|||||..|+++||++++++|+|+.+||+|+||+.+++...+..|.+ ..+.|.|...++|+|||++||||++
T Consensus       115 ~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~-~~~~~~p~~~~~i~~npttfLID~~  186 (215)
T 2i3y_A          115 KYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTF-KSISWDPVKVHDIRWNFEKFLVGPD  186 (215)
T ss_dssp             HHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCT-TTCCSSSCCTTCCCSTTCEEEECTT
T ss_pred             HhccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccc-cccccccccccccccCceEEEECCC
Confidence            47899999999999999999999999999999998875322222221 2345677777799999999999986



>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} Back     alignment and structure
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A Back     alignment and structure
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A Back     alignment and structure
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A Back     alignment and structure
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} Back     alignment and structure
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A Back     alignment and structure
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} Back     alignment and structure
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} Back     alignment and structure
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} Back     alignment and structure
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A Back     alignment and structure
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 77
d2f8aa1184 c.47.1.10 (A:12-195) Glutathione peroxidase {Human 2e-13
>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]
 Score = 59.2 bits (142), Expect = 2e-13
 Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 1   MNCVRWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRD---GYRTPVTDLYY 57
           +N +++VRPG  F P F  F K +VNG   HPL+ FL+ + P   D      T    + +
Sbjct: 80  LNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITW 139

Query: 58  RPVRVSDVRWNFEKFLVD 75
            PV  +DV WNFEKFLV 
Sbjct: 140 SPVCRNDVAWNFEKFLVG 157


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query77
d2f8aa1184 Glutathione peroxidase {Human (Homo sapiens) [TaxI 99.91
>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91  E-value=1.6e-25  Score=151.65  Aligned_cols=74  Identities=42%  Similarity=0.835  Sum_probs=61.8

Q ss_pred             ceeeecCCCcccceeeeEeEEecCCCCCHHHHHHHhcCCCCCCCCCCc---ccccccCCCCCCCccccceEEeecCC
Q psy1629           4 VRWVRPGNNFNPGFQFFHKIQVNGENEHPLYTFLKSSCPPTRDGYRTP---VTDLYYRPVRVSDVRWNFEKFLVDHR   77 (77)
Q Consensus         4 l~~vrpg~~f~v~Fp~f~Ki~VnG~~ahPLy~~Lk~~~~~~~~~~g~~---~~~~~~~~~~~~~I~WNF~KFLVdrd   77 (77)
                      ++++||+.+|+++||||+|++|||++|||||+||+++++......+..   -..+.|++...++|+||||||||||+
T Consensus        83 ~~~~~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~  159 (184)
T d2f8aa1          83 LKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPD  159 (184)
T ss_dssp             HHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTT
T ss_pred             hheeccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCC
Confidence            467899999999999999999999999999999999998543322211   13456888888999999999999996