Psyllid ID: psy16306

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD
Secondary Structure (PSIPRED)
ccccEEEEEEccccccccccccccccccccccEEEEEEEEcccccccccEEEcccccccccccHHHHHHHHHHccccccccccccEEEEccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccEEEEccEEEEcccccccccccccccEEEEEcccccHHHHHHcHHccccccccHHHHHHHHHHHHHccccccccccccccEEcccccccccccccccccccccEEEEEcccccHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccEEEEccccEEcc
Secondary Structure Prediction (SSPRO)
ccccccEEEcccccccccccccccccccccccEEEEEEEcccccEEcccEEEEcccEEEcccEHHHHcccEEEccEEEEEEcccEEEEEcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHcccccccEEEEEEEEEEccEEccEEEEEEcccEEEEEcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHcccccccEEEEEEEEEEccEEccEEEEEEcccEEEEEcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHcccccccEEEEEEEEEEcc
Coil and Loop (DISEMBL)
qfqeihvqlcspeqlqpkpevsqlkfgtvfTDHMLQIEFneqlggwqaprvsplkyltlhpaaKVLHYSVELFEGMkayrgvdghirmfrpemnmDRMNRSALraglpqfdpeEMIQCLNRLIQIdqewvphttaaslyirptligtdlfegmkayrgvdghirmfrpemnmDRMNQSALraglpqfdpeEMIQCLNRLIQIdqewvphttaaslyirptligtdlfegmkayrgvdghirmfrpemnmDRMNRSALraglpqfdpeEMIQCLNRLIQIdqewvphttaaslyirptligtd
Flexible Loop (DISEMBL)
qfqeihvqlcspeqlqpkpEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWvphttaaslyirptligtd
Low Complexity Region (SEG)
QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD
Disordered region (IsUnstruct)
**********************QLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFR****************LPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFR******************QFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFR****************LPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLI***
Disordered Region (DISOPRED)
***EIHV****************LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGT*
Disordered Region (DISEMBL)
QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD
Disordered Region (DISPRO)
*F**IHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q9GKM4	385	Branched-chain-amino-acid	N/A	N/A	0.460	0.361	0.592	2e-47
P54687	386	Branched-chain-amino-acid	yes	N/A	0.460	0.360	0.578	3e-46
P24288	386	Branched-chain-amino-acid	no	N/A	0.460	0.360	0.585	4e-45
P54690	411	Branched-chain-amino-acid	yes	N/A	0.503	0.369	0.535	5e-45
P54688	415	Branched-chain-amino-acid	yes	N/A	0.480	0.349	0.557	1e-44
Q5EA40	393	Branched-chain-amino-acid	no	N/A	0.486	0.374	0.510	2e-39
A7SLW1	405	Branched-chain-amino-acid	N/A	N/A	0.456	0.340	0.539	3e-39
O35855	393	Branched-chain-amino-acid	no	N/A	0.483	0.371	0.506	7e-39
O15382	392	Branched-chain-amino-acid	no	N/A	0.483	0.372	0.496	1e-38
O35854	393	Branched-chain-amino-acid	no	N/A	0.483	0.371	0.506	1e-38

>sp|Q9GKM4|BCAT1_SHEEP Branched-chain-amino-acid aminotransferase, cytosolic OS=Ovis aries GN=BCAT1 PE=2 SV=1

 Score =  189 bits (479), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 115/140 (82%), Gaps = 1/140 (0%)

Query: 15  LQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFE 74
           L+ KP+ S L FGTVFTDHML +E++ +LG W+ PR+ PL+ L+LHP +  LHY+VELFE
Sbjct: 37  LKEKPDPSTLVFGTVFTDHMLTVEWSLELG-WEKPRIKPLQNLSLHPGSSALHYAVELFE 95

Query: 75  GMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTT 134
           G+KA+RGVD  IR+FRP +NMDRM RSA+RA LP FD +E+++C+ +L+++D+EWVP++T
Sbjct: 96  GLKAFRGVDNKIRLFRPNLNMDRMYRSAMRATLPAFDKKELLECIQQLVKLDEEWVPYST 155

Query: 135 AASLYIRPTLIGTDLFEGMK 154
           +ASLYIRPT IGT+   G+K
Sbjct: 156 SASLYIRPTFIGTEPSLGVK 175

Catalyzes the first reaction in the catabolism of the essential branched chain amino acids leucine, isoleucine, and valine.
Ovis aries (taxid: 9940)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 4EC: 2

>sp|P54687|BCAT1_HUMAN Branched-chain-amino-acid aminotransferase, cytosolic OS=Homo sapiens GN=BCAT1 PE=1 SV=3

 Score =  185 bits (470), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 81/140 (57%), Positives = 113/140 (80%), Gaps = 1/140 (0%)

Query: 15  LQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFE 74
           L+ KP+ + L FGTVFTDHML +E++ + G W+ P + PL+ L+LHP +  LHY+VELFE
Sbjct: 38  LKEKPDPNNLVFGTVFTDHMLTVEWSSEFG-WEKPHIKPLQNLSLHPGSSALHYAVELFE 96

Query: 75  GMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTT 134
           G+KA+RGVD  IR+F+P +NMDRM RSA+RA LP FD EE+++C+ +L+++DQEWVP++T
Sbjct: 97  GLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYST 156

Query: 135 AASLYIRPTLIGTDLFEGMK 154
           +ASLYIRPT IGT+   G+K
Sbjct: 157 SASLYIRPTFIGTEPSLGVK 176

Catalyzes the first reaction in the catabolism of the essential branched chain amino acids leucine, isoleucine, and valine.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|P24288|BCAT1_MOUSE Branched-chain-amino-acid aminotransferase, cytosolic OS=Mus musculus GN=Bcat1 PE=2 SV=2

 Score =  182 bits (461), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 108/140 (77%), Gaps = 1/140 (0%)

Query: 15  LQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFE 74
           L+ KP+   L FG  FTDHML +E++    GW+ P + P   L +HPAA VLHY+VELFE
Sbjct: 38  LKEKPDPDSLVFGATFTDHMLTVEWSSA-SGWEKPHIKPFGNLPIHPAASVLHYAVELFE 96

Query: 75  GMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTT 134
           G+KA+RGVD  IR+FRP++NMDRM RSA+R  LP FD EE+++C+ +L+QIDQEWVP++T
Sbjct: 97  GLKAFRGVDNKIRLFRPDLNMDRMCRSAVRTTLPMFDKEELLKCILQLLQIDQEWVPYST 156

Query: 135 AASLYIRPTLIGTDLFEGMK 154
           +ASLYIRPT IGT+   G+K
Sbjct: 157 SASLYIRPTFIGTEPSLGVK 176

Catalyzes the first reaction in the catabolism of the essential branched chain amino acids leucine, isoleucine, and valine.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|P54690|BCAT1_RAT Branched-chain-amino-acid aminotransferase, cytosolic OS=Rattus norvegicus GN=Bcat1 PE=1 SV=1

 Score =  181 bits (459), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 82/153 (53%), Positives = 114/153 (74%), Gaps = 1/153 (0%)

Query: 2   FQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHP 61
           F+   + +   + L+ KP+ S L FG  FTDHML +E+  + G W  P + P + L++HP
Sbjct: 50  FRAKDLIITKADVLKKKPDPSSLVFGASFTDHMLMVEWTSKYG-WDKPHIKPFENLSIHP 108

Query: 62  AAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNR 121
           AA VLHY+VELFEG+KA+RGVD  IR+FRP++NM RM RSA+R  LP+FD EE++QC+ +
Sbjct: 109 AASVLHYAVELFEGLKAFRGVDNKIRLFRPDLNMKRMCRSAVRTTLPEFDKEELLQCVLQ 168

Query: 122 LIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMK 154
           LIQ+D+EWVP++T+ASLYIRPT IG +   G+K
Sbjct: 169 LIQLDREWVPYSTSASLYIRPTFIGIEPSLGVK 201

Catalyzes the first reaction in the catabolism of the essential branched chain amino acids leucine, isoleucine, and valine.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|P54688|BCAT_CAEEL Branched-chain-amino-acid aminotransferase, cytosolic OS=Caenorhabditis elegans GN=bcat-1 PE=2 SV=2

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/147 (55%), Positives = 110/147 (74%), Gaps = 2/147 (1%)

Query: 3   QEIHVQLCSPEQLQPKP-EVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHP 61
           +++ +QL  P QL+ KP + ++LKFG  + D+M+  +++ + G W  P++ P+  L +HP
Sbjct: 48  RDLEIQLAGPTQLKTKPLDPTKLKFGHTYADYMMTCDWDAERG-WHHPKIEPIGELKIHP 106

Query: 62  AAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNR 121
            AKVLHY+ ELFEGMKAYRG+D  IRMFRPEMNM RM R+ALRA LP FD EEMI  L  
Sbjct: 107 GAKVLHYASELFEGMKAYRGIDNKIRMFRPEMNMARMKRTALRAALPDFDSEEMINVLTE 166

Query: 122 LIQIDQEWVPHTTAASLYIRPTLIGTD 148
           L+++DQEWVP++   SLY+RPTLIGTD
Sbjct: 167 LLRLDQEWVPNSDVCSLYLRPTLIGTD 193

Catalyzes the first reaction in the catabolism of the essential branched chain amino acids leucine, isoleucine, and valine.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q5EA40|BCAT2_BOVIN Branched-chain-amino-acid aminotransferase, mitochondrial OS=Bos taurus GN=BCAT2 PE=2 SV=1

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/149 (51%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 1   QFQEIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTL 59
            F+   +QL   ++   KP+ SQ L FG  FTDHML +E+N++  GW  PR+ P + LTL
Sbjct: 31  SFKAADLQLEMTQEPHKKPDPSQPLLFGKTFTDHMLMVEWNQE-KGWGQPRIQPFQNLTL 89

Query: 60  HPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 119
           HPA   LHYS++LFEGMKA++G D  +R+FRP +NM+RM RSALR  LP FD  E+++C+
Sbjct: 90  HPACSALHYSLQLFEGMKAFKGGDQRVRLFRPWLNMERMLRSALRLCLPSFDKIELLECI 149

Query: 120 NRLIQIDQEWVPHTTAASLYIRPTLIGTD 148
            RL+++DQ+WVP +   SLY+RP LIG +
Sbjct: 150 RRLVEVDQDWVPGSMGTSLYVRPVLIGNE 178

Catalyzes the first reaction in the catabolism of the essential branched chain amino acids leucine, isoleucine, and valine. May also function as a transporter of branched chain alpha-keto acids.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|A7SLW1|BCAT_NEMVE Branched-chain-amino-acid aminotransferase OS=Nematostella vectensis GN=v1g246094 PE=3 SV=1

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 75/139 (53%), Positives = 99/139 (71%), Gaps = 1/139 (0%)

Query: 16  QPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEG 75
           +PKP+ + L FG  FTDH L ++++++  GW  P++ P   L+L PAA  LHY +E FEG
Sbjct: 57  KPKPDPNTLVFGKEFTDHALILKWSDE-DGWDNPQIIPYGNLSLPPAASALHYGLECFEG 115

Query: 76  MKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTA 135
           MKAYRG DG IRMFRP MNM RMN SA RA LP F+  EM++C+ +LI +++EWVPH+  
Sbjct: 116 MKAYRGDDGKIRMFRPLMNMKRMNNSAARACLPTFNSGEMVECIRKLIHLEREWVPHSNT 175

Query: 136 ASLYIRPTLIGTDLFEGMK 154
            SLYIRPT+IGT    G+ 
Sbjct: 176 CSLYIRPTMIGTQASLGVN 194

Catalyzes the first reaction in the catabolism of the essential branched chain amino acids leucine, isoleucine, and valine.

Nematostella vectensis (taxid: 45351)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|O35855|BCAT2_MOUSE Branched-chain-amino-acid aminotransferase, mitochondrial OS=Mus musculus GN=Bcat2 PE=2 SV=2

 Score =  161 bits (407), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 104/148 (70%), Gaps = 2/148 (1%)

Query: 2   FQEIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLH 60
           F+   +Q+   ++ Q KP  SQ L FG  FTDHML +E+N +  GW  PR+ P + LTLH
Sbjct: 32  FKAADLQIQMTKEPQKKPAPSQALLFGKTFTDHMLMVEWNNK-AGWGPPRIQPFQNLTLH 90

Query: 61  PAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLN 120
           PA   LHYS++LFEG+KAY+G D  +R+FRP +NMDRM RSA R  LP FD +E+++C+ 
Sbjct: 91  PACSGLHYSLQLFEGLKAYKGGDQQVRLFRPWLNMDRMLRSARRLCLPDFDKQELLECIR 150

Query: 121 RLIQIDQEWVPHTTAASLYIRPTLIGTD 148
           +LI++D++WVP     SLY+RP LIG +
Sbjct: 151 QLIEVDKDWVPDGNGTSLYVRPVLIGNE 178

Catalyzes the first reaction in the catabolism of the essential branched chain amino acids leucine, isoleucine, and valine. May also function as a transporter of branched chain alpha-keto acids.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|O15382|BCAT2_HUMAN Branched-chain-amino-acid aminotransferase, mitochondrial OS=Homo sapiens GN=BCAT2 PE=1 SV=2

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 104/149 (69%), Gaps = 3/149 (2%)

Query: 1   QFQEIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTL 59
            F+   +QL   ++   KP   + L FG  FTDHML +E+N++  GW  PR+ P + LTL
Sbjct: 31  SFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK--GWGQPRIQPFQNLTL 88

Query: 60  HPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 119
           HPA+  LHYS++LFEGMKA++G D  +R+FRP +NMDRM RSA+R  LP FD  E+++C+
Sbjct: 89  HPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECI 148

Query: 120 NRLIQIDQEWVPHTTAASLYIRPTLIGTD 148
            RLI++D++WVP     SLY+RP LIG +
Sbjct: 149 RRLIEVDKDWVPDAAGTSLYVRPVLIGNE 177

Catalyzes the first reaction in the catabolism of the essential branched chain amino acids leucine, isoleucine, and valine. May also function as a transporter of branched chain alpha-keto acids.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|O35854|BCAT2_RAT Branched-chain-amino-acid aminotransferase, mitochondrial OS=Rattus norvegicus GN=Bcat2 PE=1 SV=1

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 103/148 (69%), Gaps = 2/148 (1%)

Query: 2   FQEIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLH 60
           F+   +Q+    + Q KP  SQ L FG  FTDHML +E+N + G W  PR+ P + LTLH
Sbjct: 32  FKAADLQVQVTREPQKKPAPSQPLLFGKTFTDHMLMVEWNSKTG-WGPPRIQPFQNLTLH 90

Query: 61  PAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLN 120
           PA   LHYS++LFEG+KAY+G D  +R+FRP +NMDRM RSA R  LP FD +E+++C+ 
Sbjct: 91  PACSGLHYSLQLFEGLKAYKGRDKQVRLFRPWLNMDRMLRSARRLCLPDFDKQELLECIR 150

Query: 121 RLIQIDQEWVPHTTAASLYIRPTLIGTD 148
           +LI++D++WVP     SLY+RP LIG +
Sbjct: 151 QLIEVDKDWVPDGNGTSLYVRPVLIGNE 178

Catalyzes the first reaction in the catabolism of the essential branched chain amino acids leucine, isoleucine, and valine. May also function as a transporter of branched chain alpha-keto acids.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
383855502	409	PREDICTED: branched-chain-amino-acid ami	0.456	0.337	0.668	2e-56
340729388	410	PREDICTED: branched-chain-amino-acid ami	0.456	0.336	0.682	5e-56
350417730	410	PREDICTED: branched-chain-amino-acid ami	0.456	0.336	0.675	6e-56
340729390	374	PREDICTED: branched-chain-amino-acid ami	0.456	0.368	0.682	6e-56
307206700	429	Branched-chain-amino-acid aminotransfera	0.490	0.344	0.662	1e-55
328794140	355	PREDICTED: branched-chain-amino-acid ami	0.513	0.436	0.632	1e-55
328791502	410	PREDICTED: branched-chain-amino-acid ami	0.513	0.378	0.632	2e-55
380019864	409	PREDICTED: branched-chain-amino-acid ami	0.513	0.378	0.632	2e-55
332023935	407	Branched-chain-amino-acid aminotransfera	0.490	0.363	0.655	3e-55
345491950	407	PREDICTED: branched-chain-amino-acid ami	0.490	0.363	0.662	4e-55

>gi|383855502|ref|XP_003703249.1| PREDICTED: branched-chain-amino-acid aminotransferase, cytosolic-like [Megachile rotundata]

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 99/148 (66%), Positives = 125/148 (84%)

Query: 1   QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLH 60
           ++ ++ V+L  PEQLQPKP+V+ LKFG  FTDHML+I + E LGGWQ P ++P + L LH
Sbjct: 43  KYADLSVRLAGPEQLQPKPDVNALKFGKYFTDHMLKIFYYEALGGWQVPEITPFENLVLH 102

Query: 61  PAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLN 120
           PA+KVLHY+VELFEG+KAYRGVDG IRMFRP++NM+RMN SA+RAGLP F  +E+++C +
Sbjct: 103 PASKVLHYAVELFEGLKAYRGVDGKIRMFRPDLNMERMNTSAIRAGLPTFIGDELVKCCS 162

Query: 121 RLIQIDQEWVPHTTAASLYIRPTLIGTD 148
           RLI IDQEWVPH+TA+SLYIRPTLIG D
Sbjct: 163 RLISIDQEWVPHSTASSLYIRPTLIGID 190

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729388|ref|XP_003402986.1| PREDICTED: branched-chain-amino-acid aminotransferase, cytosolic-like isoform 1 [Bombus terrestris]

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 101/148 (68%), Positives = 122/148 (82%)

Query: 1   QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLH 60
           ++ ++ V+L  P+QLQPKP VS L FG  FTDHML+I ++E LGGWQ P ++PL+ L LH
Sbjct: 44  KYADLTVRLAGPDQLQPKPNVSALAFGKYFTDHMLKIFYHETLGGWQIPEITPLEKLVLH 103

Query: 61  PAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLN 120
           PA+KVLHY+VELFEG+KAYRGVDG IRMFRPE+NM+RMN SA R GLP F  EE+I+C  
Sbjct: 104 PASKVLHYAVELFEGLKAYRGVDGKIRMFRPELNMERMNSSATRTGLPTFIGEELIKCCC 163

Query: 121 RLIQIDQEWVPHTTAASLYIRPTLIGTD 148
           RLI IDQEWVPH+TA+SLYIRPTLIG D
Sbjct: 164 RLISIDQEWVPHSTASSLYIRPTLIGID 191

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417730|ref|XP_003491566.1| PREDICTED: branched-chain-amino-acid aminotransferase, cytosolic-like [Bombus impatiens]

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 100/148 (67%), Positives = 123/148 (83%)

Query: 1   QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLH 60
           ++ ++ V+L  P+QLQPKP VS L FG  FTDHML+I ++E LGGWQ P ++PL+ L LH
Sbjct: 44  KYADLTVRLAGPDQLQPKPNVSALAFGKYFTDHMLKIFYHETLGGWQIPEITPLEKLVLH 103

Query: 61  PAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLN 120
           PA+KVLHY+VELFEG+KAYRGVDG IR+FRPE+NM+RMN SA+R GLP F  EE+I+C  
Sbjct: 104 PASKVLHYAVELFEGLKAYRGVDGKIRIFRPELNMERMNNSAMRTGLPTFIGEELIKCCC 163

Query: 121 RLIQIDQEWVPHTTAASLYIRPTLIGTD 148
           RLI IDQEWVPH+TA+SLYIRPTLIG D
Sbjct: 164 RLISIDQEWVPHSTASSLYIRPTLIGID 191

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729390|ref|XP_003402987.1| PREDICTED: branched-chain-amino-acid aminotransferase, cytosolic-like isoform 2 [Bombus terrestris] gi|340729392|ref|XP_003402988.1| PREDICTED: branched-chain-amino-acid aminotransferase, cytosolic-like isoform 3 [Bombus terrestris]

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 101/148 (68%), Positives = 122/148 (82%)

Query: 1   QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLH 60
           ++ ++ V+L  P+QLQPKP VS L FG  FTDHML+I ++E LGGWQ P ++PL+ L LH
Sbjct: 8   KYADLTVRLAGPDQLQPKPNVSALAFGKYFTDHMLKIFYHETLGGWQIPEITPLEKLVLH 67

Query: 61  PAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLN 120
           PA+KVLHY+VELFEG+KAYRGVDG IRMFRPE+NM+RMN SA R GLP F  EE+I+C  
Sbjct: 68  PASKVLHYAVELFEGLKAYRGVDGKIRMFRPELNMERMNSSATRTGLPTFIGEELIKCCC 127

Query: 121 RLIQIDQEWVPHTTAASLYIRPTLIGTD 148
           RLI IDQEWVPH+TA+SLYIRPTLIG D
Sbjct: 128 RLISIDQEWVPHSTASSLYIRPTLIGID 155

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206700|gb|EFN84655.1| Branched-chain-amino-acid aminotransferase, cytosolic [Harpegnathos saltator]

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 123/148 (83%)

Query: 1   QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLH 60
           ++ ++ V+L +P +L+PKP  SQL FG  FTDHML+I + E LGGWQAP + P + L LH
Sbjct: 64  KYADLSVRLANPHELRPKPATSQLTFGKYFTDHMLKIHYYEALGGWQAPEIMPFENLVLH 123

Query: 61  PAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLN 120
           PAAKVLHY+VELFEGMKAYRGVDG IR+FRPE+NM+RMN SA+R+GLP F  +E+I+CL+
Sbjct: 124 PAAKVLHYAVELFEGMKAYRGVDGKIRLFRPELNMERMNNSAVRSGLPAFRGDELIKCLS 183

Query: 121 RLIQIDQEWVPHTTAASLYIRPTLIGTD 148
           RLI IDQEWVPH+TA+SLYIRPT IG +
Sbjct: 184 RLISIDQEWVPHSTASSLYIRPTYIGIE 211

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328794140|ref|XP_003251999.1| PREDICTED: branched-chain-amino-acid aminotransferase, cytosolic-like, partial [Apis mellifera]

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 126/155 (81%)

Query: 1   QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLH 60
           ++ ++ V+L  PEQLQPKP+VS L FG  FTDH+L+I ++E LGGWQ P ++P + L LH
Sbjct: 37  RYTDLSVRLAGPEQLQPKPDVSDLAFGKYFTDHILKIFYHETLGGWQRPEITPFENLVLH 96

Query: 61  PAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLN 120
           PA+KV HY++ELFEG+KAYRGVDG IR+FRPE+NM+RMN SA+R GLP F  EE+I+CL 
Sbjct: 97  PASKVFHYAIELFEGLKAYRGVDGKIRIFRPELNMERMNSSAMRTGLPVFIGEELIKCLC 156

Query: 121 RLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKA 155
           RLI IDQEWVPH+TA+SLYIRPT+IG D   G+ +
Sbjct: 157 RLISIDQEWVPHSTASSLYIRPTMIGIDPILGVTS 191

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791502|ref|XP_396341.3| PREDICTED: branched-chain-amino-acid aminotransferase, cytosolic-like isoform 1 [Apis mellifera]

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 126/155 (81%)

Query: 1   QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLH 60
           ++ ++ V+L  PEQLQPKP+VS L FG  FTDH+L+I ++E LGGWQ P ++P + L LH
Sbjct: 44  RYTDLSVRLAGPEQLQPKPDVSDLAFGKYFTDHILKIFYHETLGGWQRPEITPFENLVLH 103

Query: 61  PAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLN 120
           PA+KV HY++ELFEG+KAYRGVDG IR+FRPE+NM+RMN SA+R GLP F  EE+I+CL 
Sbjct: 104 PASKVFHYAIELFEGLKAYRGVDGKIRIFRPELNMERMNSSAMRTGLPVFIGEELIKCLC 163

Query: 121 RLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKA 155
           RLI IDQEWVPH+TA+SLYIRPT+IG D   G+ +
Sbjct: 164 RLISIDQEWVPHSTASSLYIRPTMIGIDPILGVTS 198

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019864|ref|XP_003693821.1| PREDICTED: branched-chain-amino-acid aminotransferase, cytosolic-like [Apis florea]

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 126/155 (81%)

Query: 1   QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLH 60
           ++ ++ V+L  PEQLQPKP+VS L FG  FTDH+L+I ++E LGGWQ P ++P + L LH
Sbjct: 44  RYTDLSVRLAGPEQLQPKPDVSDLAFGKYFTDHILKIFYHETLGGWQRPEIAPFENLVLH 103

Query: 61  PAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLN 120
           PA+KV HY++ELFEG+KAYRGVDG IR+FRPE+NM+RMN SA+R GLP F  EE+I+CL 
Sbjct: 104 PASKVFHYAIELFEGLKAYRGVDGKIRIFRPELNMERMNSSAMRTGLPVFIGEELIKCLC 163

Query: 121 RLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKA 155
           RLI IDQEWVPH+TA+SLYIRPT+IG D   G+ +
Sbjct: 164 RLISIDQEWVPHSTASSLYIRPTMIGIDPILGVTS 198

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023935|gb|EGI64153.1| Branched-chain-amino-acid aminotransferase, cytosolic [Acromyrmex echinatior]

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 97/148 (65%), Positives = 122/148 (82%)

Query: 1   QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLH 60
           ++ ++ V+L  P QL PKP+V++L FG  FTDHML++ + E + GWQAP + P + + LH
Sbjct: 42  KYADLSVRLAGPNQLNPKPDVNKLSFGKYFTDHMLKVHYYEGMNGWQAPEIMPFENIVLH 101

Query: 61  PAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLN 120
           PAAKVLHY+VELFEGMKAYRGVDG IR+FRPE+NM+RMN SA+RAGLP F  EE+I+C+ 
Sbjct: 102 PAAKVLHYAVELFEGMKAYRGVDGKIRLFRPELNMERMNNSAVRAGLPPFRGEELIKCIC 161

Query: 121 RLIQIDQEWVPHTTAASLYIRPTLIGTD 148
           RLI IDQEWVPH+TA+SLYIRPTLIG D
Sbjct: 162 RLISIDQEWVPHSTASSLYIRPTLIGID 189

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491950|ref|XP_001601793.2| PREDICTED: branched-chain-amino-acid aminotransferase-like [Nasonia vitripennis]

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 122/148 (82%)

Query: 1   QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLH 60
           ++ ++ V+L +P QLQ KP VS L FG  FTDHML++ + E LGGWQ P ++P + L LH
Sbjct: 43  KYSDMSVRLAAPHQLQIKPNVSDLAFGKYFTDHMLKVFYYEALGGWQMPEITPFENLVLH 102

Query: 61  PAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLN 120
           PAAKVLHY++ELFEGMKAYRGVDG IR+FRP+MNMDRMN SA+R+GLP F+  E+I+C+N
Sbjct: 103 PAAKVLHYAIELFEGMKAYRGVDGKIRVFRPDMNMDRMNASAVRSGLPTFNGMELIKCIN 162

Query: 121 RLIQIDQEWVPHTTAASLYIRPTLIGTD 148
           RLI IDQEWVPH+ A+SLYIRPTLIG D
Sbjct: 163 RLISIDQEWVPHSEASSLYIRPTLIGID 190

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
FB|FBgn0030482	443	CG1673 [Drosophila melanogaste	0.490	0.334	0.655	1.5e-51
UNIPROTKB|F1PY28	385	BCAT1 "Branched-chain-amino-ac	0.460	0.361	0.6	2.7e-45
UNIPROTKB|A4IFQ7	386	BCAT1 "Branched-chain-amino-ac	0.460	0.360	0.585	3.9e-44
UNIPROTKB|P54687	386	BCAT1 "Branched-chain-amino-ac	0.460	0.360	0.578	8.1e-44
UNIPROTKB|I3LKW2	457	BCAT1 "Branched-chain-amino-ac	0.440	0.291	0.589	1.7e-43
MGI|MGI:104861	386	Bcat1 "branched chain aminotra	0.460	0.360	0.585	7.3e-43
UNIPROTKB|F5H2F2	144	BCAT1 "Branched-chain-amino-ac	0.433	0.909	0.590	1.2e-42
WB|WBGene00001149	415	bcat-1 [Caenorhabditis elegans	0.480	0.349	0.557	1.5e-42
UNIPROTKB|E1BSF5	378	BCAT1 "Branched-chain-amino-ac	0.460	0.367	0.592	1.9e-42
RGD|2195	411	Bcat1 "branched chain amino ac	0.460	0.338	0.578	3.2e-42

FB|FBgn0030482 CG1673 [Drosophila melanogaster (taxid:7227)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 99/151 (65%), Positives = 125/151 (82%)

Query:     1 QFQ--EIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYL 57
             QF+  +I V+L +PEQLQPKP+  + L FG +FTDHML+I +++ LGGWQ P ++PL+ L
Sbjct:    77 QFRASQISVRLAAPEQLQPKPDNDEELGFGRLFTDHMLKIYYHKSLGGWQRPEITPLENL 136

Query:    58 TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQ 117
              +HPAAKVLHY+VELFEGMKAYRGVDG IR+FRP+MNM+RMN +A R+GLP F+ +E +Q
Sbjct:   137 VMHPAAKVLHYAVELFEGMKAYRGVDGKIRIFRPDMNMNRMNLAAQRSGLPTFEGKEFVQ 196

Query:   118 CLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 148
             CL+RL+ ID EWVPHT  ASLYIRPTLIG D
Sbjct:   197 CLSRLLSIDSEWVPHTDTASLYIRPTLIGID 227

GO:0004084 "branched-chain-amino-acid transaminase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=ISS

UNIPROTKB|F1PY28 BCAT1 "Branched-chain-amino-acid aminotransferase" [Canis lupus familiaris (taxid:9615)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 84/140 (60%), Positives = 115/140 (82%)

Query:    15 LQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFE 74
             L+ KP+ + L FGTVFTDHML +E++ + G W  PR+ PL+ L+LHP +  LHY+VELFE
Sbjct:    37 LKEKPDPNALVFGTVFTDHMLTVEWSSEFG-WDKPRIKPLQNLSLHPGSSALHYAVELFE 95

Query:    75 GMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTT 134
             G+KA+RGVD  IR+FRP++NMDRM+RSALRA LP FD EE+++C+ +L+++DQEWVP++T
Sbjct:    96 GLKAFRGVDNKIRLFRPDLNMDRMHRSALRATLPVFDKEELLECIKQLVKLDQEWVPYST 155

Query:   135 AASLYIRPTLIGTDLFEGMK 154
             +ASLYIRPT IGT+   G+K
Sbjct:   156 SASLYIRPTFIGTEPSLGVK 175

GO:0052656 "L-isoleucine transaminase activity" evidence=IEA

GO:0052655 "L-valine transaminase activity" evidence=IEA

GO:0052654 "L-leucine transaminase activity" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA

UNIPROTKB|A4IFQ7 BCAT1 "Branched-chain-amino-acid aminotransferase" [Bos taurus (taxid:9913)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 82/140 (58%), Positives = 114/140 (81%)

Query:    15 LQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFE 74
             L+ KP+ S L FGTVFTDHML +E++ +LG W+ PR+ PL+ L+LHP +   HY+VELFE
Sbjct:    38 LKEKPDSSTLVFGTVFTDHMLTVEWSLELG-WEKPRIKPLQNLSLHPGSSAFHYAVELFE 96

Query:    75 GMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTT 134
             G+KA+RGVD  IR+FRP +NMDRM RSA+RA LP FD +E+++C+ +L+++D+EWVP++T
Sbjct:    97 GLKAFRGVDNKIRLFRPNLNMDRMYRSAMRATLPAFDKKELLECIQQLVKLDEEWVPYST 156

Query:   135 AASLYIRPTLIGTDLFEGMK 154
             +ASLYIRPT IGT+   G+K
Sbjct:   157 SASLYIRPTFIGTEPSLGVK 176

GO:0009083 "branched-chain amino acid catabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0052656 "L-isoleucine transaminase activity" evidence=IEA

GO:0052655 "L-valine transaminase activity" evidence=IEA

GO:0052654 "L-leucine transaminase activity" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA

UNIPROTKB|P54687 BCAT1 "Branched-chain-amino-acid aminotransferase, cytosolic" [Homo sapiens (taxid:9606)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 81/140 (57%), Positives = 113/140 (80%)

Query:    15 LQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFE 74
             L+ KP+ + L FGTVFTDHML +E++ + G W+ P + PL+ L+LHP +  LHY+VELFE
Sbjct:    38 LKEKPDPNNLVFGTVFTDHMLTVEWSSEFG-WEKPHIKPLQNLSLHPGSSALHYAVELFE 96

Query:    75 GMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTT 134
             G+KA+RGVD  IR+F+P +NMDRM RSA+RA LP FD EE+++C+ +L+++DQEWVP++T
Sbjct:    97 GLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYST 156

Query:   135 AASLYIRPTLIGTDLFEGMK 154
             +ASLYIRPT IGT+   G+K
Sbjct:   157 SASLYIRPTFIGTEPSLGVK 176

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA

GO:0052654 "L-leucine transaminase activity" evidence=IEA

GO:0052655 "L-valine transaminase activity" evidence=IEA

GO:0052656 "L-isoleucine transaminase activity" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0004084 "branched-chain-amino-acid transaminase activity" evidence=EXP

GO:0005829 "cytosol" evidence=TAS

GO:0009083 "branched-chain amino acid catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|I3LKW2 BCAT1 "Branched-chain-amino-acid aminotransferase" [Sus scrofa (taxid:9823)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 79/134 (58%), Positives = 109/134 (81%)

Query:    15 LQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFE 74
             L+ KP+   L FGTVFTDHML +E++ +  GW+ P + PL+ L+LHP +   HY+VELFE
Sbjct:   113 LKEKPDPDTLVFGTVFTDHMLTVEWSSE-SGWEKPHIKPLQNLSLHPGSSAFHYAVELFE 171

Query:    75 GMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTT 134
             G+KA+RGVD  IR+FRP++NMDRM RSA+RA LP FD EE+++C+ +L+++DQEWVP++T
Sbjct:   172 GLKAFRGVDNKIRLFRPKLNMDRMYRSAMRATLPAFDKEELLECIQQLVKLDQEWVPYST 231

Query:   135 AASLYIRPTLIGTD 148
             +ASLYIRPT IGT+
Sbjct:   232 SASLYIRPTFIGTE 245

GO:0052655 "L-valine transaminase activity" evidence=IEA

GO:0052654 "L-leucine transaminase activity" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA

GO:0009083 "branched-chain amino acid catabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0052656 "L-isoleucine transaminase activity" evidence=IEA

MGI|MGI:104861 Bcat1 "branched chain aminotransferase 1, cytosolic" [Mus musculus (taxid:10090)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 82/140 (58%), Positives = 108/140 (77%)

Query:    15 LQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFE 74
             L+ KP+   L FG  FTDHML +E++    GW+ P + P   L +HPAA VLHY+VELFE
Sbjct:    38 LKEKPDPDSLVFGATFTDHMLTVEWSSA-SGWEKPHIKPFGNLPIHPAASVLHYAVELFE 96

Query:    75 GMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTT 134
             G+KA+RGVD  IR+FRP++NMDRM RSA+R  LP FD EE+++C+ +L+QIDQEWVP++T
Sbjct:    97 GLKAFRGVDNKIRLFRPDLNMDRMCRSAVRTTLPMFDKEELLKCILQLLQIDQEWVPYST 156

Query:   135 AASLYIRPTLIGTDLFEGMK 154
             +ASLYIRPT IGT+   G+K
Sbjct:   157 SASLYIRPTFIGTEPSLGVK 176

GO:0003824 "catalytic activity" evidence=IEA

GO:0004084 "branched-chain-amino-acid transaminase activity" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009081 "branched-chain amino acid metabolic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA

GO:0009083 "branched-chain amino acid catabolic process" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0031571 "mitotic G1 DNA damage checkpoint" evidence=ISA

GO:0034644 "cellular response to UV" evidence=ISA

GO:0042802 "identical protein binding" evidence=ISO

GO:0052654 "L-leucine transaminase activity" evidence=IEA

GO:0052655 "L-valine transaminase activity" evidence=IEA

GO:0052656 "L-isoleucine transaminase activity" evidence=IEA

UNIPROTKB|F5H2F2 BCAT1 "Branched-chain-amino-acid aminotransferase, cytosolic" [Homo sapiens (taxid:9606)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 78/132 (59%), Positives = 108/132 (81%)

Query:    15 LQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFE 74
             L+ KP+ + L FGTVFTDHML +E++ + G W+ P + PL+ L+LHP +  LHY+VELFE
Sbjct:    14 LKEKPDPNNLVFGTVFTDHMLTVEWSSEFG-WEKPHIKPLQNLSLHPGSSALHYAVELFE 72

Query:    75 GMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTT 134
             G+KA+RGVD  IR+F+P +NMDRM RSA+RA LP FD EE+++C+ +L+++DQEWVP++T
Sbjct:    73 GLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYST 132

Query:   135 AASLYIRPTLIG 146
             +ASLYIRPT IG
Sbjct:   133 SASLYIRPTFIG 144

GO:0003824 "catalytic activity" evidence=IEA

WB|WBGene00001149 bcat-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 82/147 (55%), Positives = 110/147 (74%)

Query:     3 QEIHVQLCSPEQLQPKP-EVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHP 61
             +++ +QL  P QL+ KP + ++LKFG  + D+M+  +++ + G W  P++ P+  L +HP
Sbjct:    48 RDLEIQLAGPTQLKTKPLDPTKLKFGHTYADYMMTCDWDAERG-WHHPKIEPIGELKIHP 106

Query:    62 AAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNR 121
              AKVLHY+ ELFEGMKAYRG+D  IRMFRPEMNM RM R+ALRA LP FD EEMI  L  
Sbjct:   107 GAKVLHYASELFEGMKAYRGIDNKIRMFRPEMNMARMKRTALRAALPDFDSEEMINVLTE 166

Query:   122 LIQIDQEWVPHTTAASLYIRPTLIGTD 148
             L+++DQEWVP++   SLY+RPTLIGTD
Sbjct:   167 LLRLDQEWVPNSDVCSLYLRPTLIGTD 193

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004084 "branched-chain-amino-acid transaminase activity" evidence=IEA

GO:0009081 "branched-chain amino acid metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|E1BSF5 BCAT1 "Branched-chain-amino-acid aminotransferase" [Gallus gallus (taxid:9031)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 83/140 (59%), Positives = 110/140 (78%)

Query:    15 LQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFE 74
             L+ KP+ + L FGTVFTD+ML IE++    GW+ P + PL+ L+LHPA   LHY+ ELFE
Sbjct:    30 LKEKPDPTGLVFGTVFTDNMLTIEWSSA-SGWEKPCIRPLQNLSLHPACSSLHYATELFE 88

Query:    75 GMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTT 134
             GMKAYRGVDG IR+FRP +NMDRM RSA R  LP FD  E+++C+ +L+++++EWVP++T
Sbjct:    89 GMKAYRGVDGKIRLFRPSLNMDRMARSARRMTLPCFDQNELLECIRKLVEVEKEWVPYST 148

Query:   135 AASLYIRPTLIGTDLFEGMK 154
             AASLYIRPTLIGT+   G+K
Sbjct:   149 AASLYIRPTLIGTEPSLGVK 168

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA

GO:0052654 "L-leucine transaminase activity" evidence=IEA

GO:0052655 "L-valine transaminase activity" evidence=IEA

GO:0052656 "L-isoleucine transaminase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0009083 "branched-chain amino acid catabolic process" evidence=IEA

RGD|2195 Bcat1 "branched chain amino acid transaminase 1, cytosolic" [Rattus norvegicus (taxid:10116)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 81/140 (57%), Positives = 109/140 (77%)

Query:    15 LQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFE 74
             L+ KP+ S L FG  FTDHML +E+  + G W  P + P + L++HPAA VLHY+VELFE
Sbjct:    63 LKKKPDPSSLVFGASFTDHMLMVEWTSKYG-WDKPHIKPFENLSIHPAASVLHYAVELFE 121

Query:    75 GMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTT 134
             G+KA+RGVD  IR+FRP++NM RM RSA+R  LP+FD EE++QC+ +LIQ+D+EWVP++T
Sbjct:   122 GLKAFRGVDNKIRLFRPDLNMKRMCRSAVRTTLPEFDKEELLQCVLQLIQLDREWVPYST 181

Query:   135 AASLYIRPTLIGTDLFEGMK 154
             +ASLYIRPT IG +   G+K
Sbjct:   182 SASLYIRPTFIGIEPSLGVK 201

GO:0004084 "branched-chain-amino-acid transaminase activity" evidence=ISO;IDA;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA

GO:0009083 "branched-chain amino acid catabolic process" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IDA

GO:0052654 "L-leucine transaminase activity" evidence=IEA

GO:0052655 "L-valine transaminase activity" evidence=IEA

GO:0052656 "L-isoleucine transaminase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P54690	BCAT1_RAT	2, ., 6, ., 1, ., 4, 2	0.5359	0.5033	0.3698	yes	N/A
P47176	BCA2_YEAST	2, ., 6, ., 1, ., 4, 2	0.5757	0.4304	0.3457	yes	N/A
P54687	BCAT1_HUMAN	2, ., 6, ., 1, ., 4, 2	0.5785	0.4602	0.3601	yes	N/A
P54688	BCAT_CAEEL	2, ., 6, ., 1, ., 4, 2	0.5578	0.4801	0.3493	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	302
PRK13357	356	PRK13357, PRK13357, branched-chain amino acid amin	2e-52
cd01557	279	cd01557, BCAT_beta_family, BCAT_beta_family: Branc	2e-43
cd01557	279	cd01557, BCAT_beta_family, BCAT_beta_family: Branc	2e-35
cd01557	279	cd01557, BCAT_beta_family, BCAT_beta_family: Branc	4e-35
TIGR01123	313	TIGR01123, ilvE_II, branched-chain amino acid amin	2e-32
PRK13357	356	PRK13357, PRK13357, branched-chain amino acid amin	2e-29
PRK13357	356	PRK13357, PRK13357, branched-chain amino acid amin	8e-29
TIGR01123	313	TIGR01123, ilvE_II, branched-chain amino acid amin	5e-22
PLN02782	403	PLN02782, PLN02782, Branched-chain amino acid amin	5e-22
TIGR01123	313	TIGR01123, ilvE_II, branched-chain amino acid amin	8e-22
PLN03117	355	PLN03117, PLN03117, Branched-chain-amino-acid amin	1e-20
cd00449	256	cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependen	7e-19
PLN02883	384	PLN02883, PLN02883, Branched-chain amino acid amin	7e-18
PLN02259	388	PLN02259, PLN02259, branched-chain-amino-acid amin	1e-16
PLN02782	403	PLN02782, PLN02782, Branched-chain amino acid amin	2e-16
PLN02782	403	PLN02782, PLN02782, Branched-chain amino acid amin	2e-16
cd00449	256	cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependen	5e-16
cd00449	256	cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependen	6e-16
PLN03117	355	PLN03117, PLN03117, Branched-chain-amino-acid amin	9e-16
PLN03117	355	PLN03117, PLN03117, Branched-chain-amino-acid amin	1e-15
COG0115	284	COG0115, IlvE, Branched-chain amino acid aminotran	7e-15
PLN02883	384	PLN02883, PLN02883, Branched-chain amino acid amin	2e-13
PLN02883	384	PLN02883, PLN02883, Branched-chain amino acid amin	3e-13
COG0115	284	COG0115, IlvE, Branched-chain amino acid aminotran	1e-12
COG0115	284	COG0115, IlvE, Branched-chain amino acid aminotran	2e-12
PLN02259	388	PLN02259, PLN02259, branched-chain-amino-acid amin	7e-11
PLN02259	388	PLN02259, PLN02259, branched-chain-amino-acid amin	9e-11
PRK06606	306	PRK06606, PRK06606, branched-chain amino acid amin	4e-06
PRK06606	306	PRK06606, PRK06606, branched-chain amino acid amin	2e-04
PRK06606	306	PRK06606, PRK06606, branched-chain amino acid amin	2e-04
TIGR01122	298	TIGR01122, ilvE_I, branched-chain amino acid amino	2e-04
PRK08320	288	PRK08320, PRK08320, branched-chain amino acid amin	0.004

>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional

 Score =  174 bits (445), Expect = 2e-52
 Identities = 63/154 (40%), Positives = 90/154 (58%), Gaps = 5/154 (3%)

Query: 3   QEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPA 62
             +     S E+         L FG VFTDHM+ I++ +  G W   R+ P   L L PA
Sbjct: 3   VTLKPNPTSDEKRAIDWA--NLGFGYVFTDHMVVIDYKD--GKWHDARLVPYGPLELDPA 58

Query: 63  AKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRL 122
           A VLHY  E+FEG+KAYR  DG I +FRP+ N  R+ RSA R  +P+   E  ++ + +L
Sbjct: 59  ATVLHYGQEIFEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQL 118

Query: 123 IQIDQEWV-PHTTAASLYIRPTLIGTDLFEGMKA 155
           ++ D++WV P+   ASLY+RP +I T+ F G+K 
Sbjct: 119 VKADRDWVPPYGEGASLYLRPFMIATEPFLGVKP 152

Length = 356

>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate

 Score =  149 bits (379), Expect = 2e-43
 Identities = 50/98 (51%), Positives = 65/98 (66%)

Query: 58  TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQ 117
           +LHPA   LHY   +FEG+KAYR  DG I +FRP+ N +R+NRSA R GLP F  EE I 
Sbjct: 1   SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFID 60

Query: 118 CLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKA 155
            +  L+++D +WVP+   ASLYIRP + GTD   G+  
Sbjct: 61  AIKELVKLDADWVPYGGGASLYIRPFIFGTDPQLGVSP 98

The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life. Length = 279

>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate

 Score =  128 bits (325), Expect = 2e-35
 Identities = 43/87 (49%), Positives = 58/87 (66%)

Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
           G  +FEG+KAYR  DG I +FRP+ N +R+N+SA R GLP F  EE I  +  L+++D +
Sbjct: 12  GQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDAD 71

Query: 206 WVPHTTAASLYIRPTLIGTDLFEGMKA 232
           WVP+   ASLYIRP + GTD   G+  
Sbjct: 72  WVPYGGGASLYIRPFIFGTDPQLGVSP 98

The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life. Length = 279

>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate

 Score =  127 bits (322), Expect = 4e-35
 Identities = 43/80 (53%), Positives = 56/80 (70%)

Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
           G  +FEG+KAYR  DG I +FRP+ N +R+NRSA R GLP F  EE I  +  L+++D +
Sbjct: 12  GQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDAD 71

Query: 283 WVPHTTAASLYIRPTLIGTD 302
           WVP+   ASLYIRP + GTD
Sbjct: 72  WVPYGGGASLYIRPFIFGTD 91

The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life. Length = 279

>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase, group II

 Score =  121 bits (306), Expect = 2e-32
 Identities = 47/111 (42%), Positives = 71/111 (63%), Gaps = 1/111 (0%)

Query: 46  WQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRA 105
           W   R++P   L L P + VLHY  E FEG+KAYR  DG I +FRP+ N  R+ RSA R 
Sbjct: 1   WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRL 60

Query: 106 GLPQFDPEEMIQCLNRLIQIDQEWVP-HTTAASLYIRPTLIGTDLFEGMKA 155
            +P+   E  ++ L +L++ +++WVP + + ASLY+RP +IGT+   G++ 
Sbjct: 61  LMPELPDELFLEALRQLVKANKDWVPPYGSGASLYLRPFVIGTEPNLGVRP 111

Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family [Amino acid biosynthesis, Pyruvate family]. Length = 313

>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional

 Score =  114 bits (288), Expect = 2e-29
 Identities = 36/84 (42%), Positives = 56/84 (66%), Gaps = 1/84 (1%)

Query: 150 FEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWV-P 208
           FEG+KAYR  DG I +FRP+ N  R+ +SA R  +P+   E  ++ + +L++ D++WV P
Sbjct: 69  FEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPP 128

Query: 209 HTTAASLYIRPTLIGTDLFEGMKA 232
           +   ASLY+RP +I T+ F G+K 
Sbjct: 129 YGEGASLYLRPFMIATEPFLGVKP 152

Length = 356

>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional

 Score =  112 bits (283), Expect = 8e-29
 Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 1/77 (1%)

Query: 227 FEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWV-P 285
           FEG+KAYR  DG I +FRP+ N  R+ RSA R  +P+   E  ++ + +L++ D++WV P
Sbjct: 69  FEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPP 128

Query: 286 HTTAASLYIRPTLIGTD 302
           +   ASLY+RP +I T+
Sbjct: 129 YGEGASLYLRPFMIATE 145

Length = 356

>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase, group II

 Score = 93.3 bits (232), Expect = 5e-22
 Identities = 36/88 (40%), Positives = 59/88 (67%), Gaps = 1/88 (1%)

Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
           G + FEG+KAYR  DG I +FRP+ N  R+ +SA R  +P+   E  ++ L +L++ +++
Sbjct: 24  GQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKANKD 83

Query: 206 WVP-HTTAASLYIRPTLIGTDLFEGMKA 232
           WVP + + ASLY+RP +IGT+   G++ 
Sbjct: 84  WVPPYGSGASLYLRPFVIGTEPNLGVRP 111

Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family [Amino acid biosynthesis, Pyruvate family]. Length = 313

>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase

 Score = 94.5 bits (235), Expect = 5e-22
 Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 1/124 (0%)

Query: 24  LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVD 83
           L FG V TD+M  ++ N   G +    +     + L P+A VL+Y   LFEG+KAYR  D
Sbjct: 75  LGFGLVPTDYMYIMKCNRD-GEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKED 133

Query: 84  GHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPT 143
           G+I +FRPE N  RM   A R  +P    E+ ++ +   +  ++ WVP     SLYIRP 
Sbjct: 134 GNILLFRPEENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPL 193

Query: 144 LIGT 147
           L+G+
Sbjct: 194 LMGS 197

Length = 403

>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase, group II

 Score = 92.9 bits (231), Expect = 8e-22
 Identities = 36/81 (44%), Positives = 56/81 (69%), Gaps = 1/81 (1%)

Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
           G + FEG+KAYR  DG I +FRP+ N  R+ RSA R  +P+   E  ++ L +L++ +++
Sbjct: 24  GQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKANKD 83

Query: 283 WVP-HTTAASLYIRPTLIGTD 302
           WVP + + ASLY+RP +IGT+
Sbjct: 84  WVPPYGSGASLYLRPFVIGTE 104

Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family [Amino acid biosynthesis, Pyruvate family]. Length = 313

>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase; Provisional

 Score = 90.4 bits (224), Expect = 1e-20
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 23  QLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGV 82
           +L F  V TD+M   +   Q   +   ++ P   +++ P A +L+Y   LFEG+KAYR  
Sbjct: 24  ELGFALVPTDYMYVAKCK-QGESFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRTE 82

Query: 83  DGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRP 142
           DG I +FRP+ N  RM   A R  +     E+ ++ + + +  +++WVP     +LYIRP
Sbjct: 83  DGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRP 142

Query: 143 TLIGT 147
            LIG+
Sbjct: 143 LLIGS 147

Length = 355

>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV)

 Score = 83.8 bits (208), Expect = 7e-19
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 13/91 (14%)

Query: 63  AKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQ-FDPEEMIQCLNR 121
            + LHY   +FEG++A +G     R+FR + ++DR+NRSA R GLP  +D EE+ + L  
Sbjct: 1   DRGLHYGDGVFEGLRAGKG-----RLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKE 55

Query: 122 LIQIDQEWVPHTTAASLYIRPTLIGTDLFEG 152
           L+  +         ASLYIRP L       G
Sbjct: 56  LVAAN-------NGASLYIRPLLTRGVGGLG 79

This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity. Length = 256

>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase

 Score = 82.8 bits (204), Expect = 7e-18
 Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 1/132 (0%)

Query: 24  LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVD 83
           L F  V TD M   +     G ++   +S    + L+PAA +L+Y   L EGMKAYRG D
Sbjct: 57  LGFSLVRTDFMFATKSCRD-GNFEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGED 115

Query: 84  GHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPT 143
           G I +FRPE+N  RM   A R  +      + I+ + + +  ++ WVP     SLY+RP 
Sbjct: 116 GRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPL 175

Query: 144 LIGTDLFEGMKA 155
           L G+    G+ A
Sbjct: 176 LFGSGASLGVAA 187

Length = 384

>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2

 Score = 79.0 bits (194), Expect = 1e-16
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 1/130 (0%)

Query: 24  LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVD 83
           L FG    D+M  ++ + + G +    +SP   + L P+A VL+Y   ++EG KAYR  +
Sbjct: 61  LGFGLNPADYMYVMKCS-KDGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKEN 119

Query: 84  GHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPT 143
           G + +FRP+ N  RM   A R  +P    ++ +  + +    ++ WVP     +LYIRP 
Sbjct: 120 GKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPL 179

Query: 144 LIGTDLFEGM 153
           L+G+    G+
Sbjct: 180 LMGSGPILGL 189

Length = 388

>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase

 Score = 78.7 bits (194), Expect = 2e-16
 Identities = 34/79 (43%), Positives = 47/79 (59%)

Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
           G  LFEG+KAYR  DG+I +FRPE N  RM   A R  +P    E+ ++ +   +  ++ 
Sbjct: 119 GQGLFEGLKAYRKEDGNILLFRPEENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKR 178

Query: 206 WVPHTTAASLYIRPTLIGT 224
           WVP     SLYIRP L+G+
Sbjct: 179 WVPPPGKGSLYIRPLLMGS 197

Length = 403

>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase

 Score = 78.7 bits (194), Expect = 2e-16
 Identities = 34/79 (43%), Positives = 47/79 (59%)

Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
           G  LFEG+KAYR  DG+I +FRPE N  RM   A R  +P    E+ ++ +   +  ++ 
Sbjct: 119 GQGLFEGLKAYRKEDGNILLFRPEENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKR 178

Query: 283 WVPHTTAASLYIRPTLIGT 301
           WVP     SLYIRP L+G+
Sbjct: 179 WVPPPGKGSLYIRPLLMGS 197

Length = 403

>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV)

 Score = 75.7 bits (187), Expect = 5e-16
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 13/81 (16%)

Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQ-FDPEEMIQCLNRLIQIDQ 281
           G  +FEG++A +G     R+FR + ++DR+NRSA R GLP  +D EE+ + L  L+  + 
Sbjct: 7   GDGVFEGLRAGKG-----RLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAAN- 60

Query: 282 EWVPHTTAASLYIRPTLIGTD 302
                   ASLYIRP L    
Sbjct: 61  ------NGASLYIRPLLTRGV 75

This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity. Length = 256

>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV)

 Score = 75.7 bits (187), Expect = 6e-16
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 13/85 (15%)

Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQ-FDPEEMIQCLNRLIQIDQ 204
           G  +FEG++A +G     R+FR + ++DR+N+SA R GLP  +D EE+ + L  L+  + 
Sbjct: 7   GDGVFEGLRAGKG-----RLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAAN- 60

Query: 205 EWVPHTTAASLYIRPTLIGTDLFEG 229
                   ASLYIRP L       G
Sbjct: 61  ------NGASLYIRPLLTRGVGGLG 79

This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity. Length = 256

>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase; Provisional

 Score = 76.1 bits (187), Expect = 9e-16
 Identities = 32/79 (40%), Positives = 47/79 (59%)

Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
           G  LFEG+KAYR  DG I +FRP+ N  RM   A R  +     E+ ++ + + +  +++
Sbjct: 69  GQGLFEGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKK 128

Query: 206 WVPHTTAASLYIRPTLIGT 224
           WVP     +LYIRP LIG+
Sbjct: 129 WVPPPGKGTLYIRPLLIGS 147

Length = 355

>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase; Provisional

 Score = 76.1 bits (187), Expect = 1e-15
 Identities = 32/79 (40%), Positives = 47/79 (59%)

Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
           G  LFEG+KAYR  DG I +FRP+ N  RM   A R  +     E+ ++ + + +  +++
Sbjct: 69  GQGLFEGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKK 128

Query: 283 WVPHTTAASLYIRPTLIGT 301
           WVP     +LYIRP LIG+
Sbjct: 129 WVPPPGKGTLYIRPLLIGS 147

Length = 355

>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]

 Score = 72.8 bits (179), Expect = 7e-15
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 10/112 (8%)

Query: 45  GWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALR 104
            W    + P +   L    + LHY   +FE ++AY G     ++FR + ++ R+ RSA R
Sbjct: 4   IWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNG-----KLFRLDEHLARLKRSAKR 58

Query: 105 AGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAY 156
            GLP+ + EE I+ L +L+      VP      LYIRP + G     G++  
Sbjct: 59  LGLPRPESEEEIELLIQLLLAKNNLVP-----GLYIRPLVRGGGGGLGVRDA 105

Length = 284

>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase

 Score = 69.7 bits (170), Expect = 2e-13
 Identities = 35/87 (40%), Positives = 48/87 (55%)

Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
           G  L EGMKAYRG DG I +FRPE+N  RM   A R  +      + I+ + + +  ++ 
Sbjct: 101 GQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRR 160

Query: 206 WVPHTTAASLYIRPTLIGTDLFEGMKA 232
           WVP     SLY+RP L G+    G+ A
Sbjct: 161 WVPPPGKGSLYLRPLLFGSGASLGVAA 187

Length = 384

>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase

 Score = 69.0 bits (168), Expect = 3e-13
 Identities = 33/79 (41%), Positives = 45/79 (56%)

Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
           G  L EGMKAYRG DG I +FRPE+N  RM   A R  +      + I+ + + +  ++ 
Sbjct: 101 GQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRR 160

Query: 283 WVPHTTAASLYIRPTLIGT 301
           WVP     SLY+RP L G+
Sbjct: 161 WVPPPGKGSLYLRPLLFGS 179

Length = 384

>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 11/114 (9%)

Query: 121 RLIQIDQEWVPHTTAA-SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSA 179
             I ++ E VP   A  S+  R    G  +FE ++AY G     ++FR + ++ R+ +SA
Sbjct: 2   GKIWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNG-----KLFRLDEHLARLKRSA 56

Query: 180 LRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAY 233
            R GLP+ + EE I+ L +L+      VP      LYIRP + G     G++  
Sbjct: 57  KRLGLPRPESEEEIELLIQLLLAKNNLVP-----GLYIRPLVRGGGGGLGVRDA 105

Length = 284

>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 11/106 (10%)

Query: 198 RLIQIDQEWVPHTTAA-SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA 256
             I ++ E VP   A  S+  R    G  +FE ++AY G     ++FR + ++ R+ RSA
Sbjct: 2   GKIWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNG-----KLFRLDEHLARLKRSA 56

Query: 257 LRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
            R GLP+ + EE I+ L +L+      VP      LYIRP + G  
Sbjct: 57  KRLGLPRPESEEEIELLIQLLLAKNNLVP-----GLYIRPLVRGGG 97

Length = 284

>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2

 Score = 62.0 bits (150), Expect = 7e-11
 Identities = 28/85 (32%), Positives = 46/85 (54%)

Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
           G  ++EG KAYR  +G + +FRP+ N  RM   A R  +P    ++ +  + +    ++ 
Sbjct: 105 GQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKR 164

Query: 206 WVPHTTAASLYIRPTLIGTDLFEGM 230
           WVP     +LYIRP L+G+    G+
Sbjct: 165 WVPPAGKGTLYIRPLLMGSGPILGL 189

Length = 388

>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2

 Score = 61.7 bits (149), Expect = 9e-11
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
           G  ++EG KAYR  +G + +FRP+ N  RM   A R  +P    ++ +  + +    ++ 
Sbjct: 105 GQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKR 164

Query: 283 WVPHTTAASLYIRPTLIGT 301
           WVP     +LYIRP L+G+
Sbjct: 165 WVPPAGKGTLYIRPLLMGS 183

Length = 388

>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase; Validated

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 17/88 (19%)

Query: 63  AKV------LHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEE 114
           AKV      LHY   +FEG++AY    G   +FR   +  R+  SA  LR  +P +  +E
Sbjct: 21  AKVHVLTHALHYGTGVFEGIRAYDTPKGPA-IFRLREHTKRLFNSAKILRMEIP-YSVDE 78

Query: 115 MIQCLNRLIQIDQEWVPHTTAASLYIRP 142
                  L++  +E V      S YIRP
Sbjct: 79  -------LMEAQREVVRKNNLKSAYIRP 99

Length = 306

>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase; Validated

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSA--LRAGLPQFDPEEMIQCLNRLIQID 203
           GT +FEG++AY    G   +FR   +  R+  SA  LR  +P +  +E       L++  
Sbjct: 33  GTGVFEGIRAYDTPKGPA-IFRLREHTKRLFNSAKILRMEIP-YSVDE-------LMEAQ 83

Query: 204 QEWVPHTTAASLYIRP 219
           +E V      S YIRP
Sbjct: 84  REVVRKNNLKSAYIRP 99

Length = 306

>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase; Validated

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEEMIQCLNRLIQID 280
           GT +FEG++AY    G   +FR   +  R+  SA  LR  +P +  +E       L++  
Sbjct: 33  GTGVFEGIRAYDTPKGPA-IFRLREHTKRLFNSAKILRMEIP-YSVDE-------LMEAQ 83

Query: 281 QEWVPHTTAASLYIRP 296
           +E V      S YIRP
Sbjct: 84  REVVRKNNLKSAYIRP 99

Length = 306

>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase, group I

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 11/104 (10%)

Query: 58  TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMI 116
            +H     LHY   +FEG++AY    G   +FR + ++ R+  SA    +   +  EE  
Sbjct: 13  KVHVLTHALHYGTGVFEGIRAYDTDKG-PAIFRLKEHIQRLYDSAKIYRMEIPYSKEE-- 69

Query: 117 QCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVD 160
                L++  +E +      S YIRP  +       +       
Sbjct: 70  -----LMEATRETLRKNNLRSAYIRP--LVFRGDGDLGLNPRAG 106

Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family [Amino acid biosynthesis, Pyruvate family]. Length = 298

>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase; Reviewed

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 13/78 (16%)

Query: 122 LIQIDQEWVPHTTAA-SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSA- 179
           LI ++ E+VP   A  S++    L G  +FEG++AY G     R+FR + ++DR+  SA 
Sbjct: 4   LIYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAYNG-----RVFRLKEHIDRLYDSAK 58

Query: 180 ---LRAGLPQFDPEEMIQ 194
              L   L +   EEM +
Sbjct: 59  AIMLEIPLSK---EEMTE 73

Length = 288

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
PLN02782	403	Branched-chain amino acid aminotransferase	100.0
PLN02883	384	Branched-chain amino acid aminotransferase	100.0
PLN02259	388	branched-chain-amino-acid aminotransferase 2	100.0
KOG0975|consensus	379		99.97
PLN03117	355	Branched-chain-amino-acid aminotransferase; Provis	99.96
PRK13357	356	branched-chain amino acid aminotransferase; Provis	99.95
PRK12479	299	branched-chain amino acid aminotransferase; Provis	99.88
PRK12400	290	D-amino acid aminotransferase; Reviewed	99.86
PRK08320	288	branched-chain amino acid aminotransferase; Review	99.86
TIGR01121	276	D_amino_aminoT D-amino acid aminotransferase. Spec	99.86
PRK06680	286	D-amino acid aminotransferase; Reviewed	99.86
TIGR01123	313	ilvE_II branched-chain amino acid aminotransferase	99.85
cd01558	270	D-AAT_like D-Alanine aminotransferase (D-AAT_like)	99.85
TIGR01122	298	ilvE_I branched-chain amino acid aminotransferase,	99.83
PRK07544	292	branched-chain amino acid aminotransferase; Valida	99.82
PRK06606	306	branched-chain amino acid aminotransferase; Valida	99.81
PLN02845	336	Branched-chain-amino-acid aminotransferase-like pr	99.79
PRK13356	286	aminotransferase; Provisional	99.79
PRK07650	283	4-amino-4-deoxychorismate lyase; Provisional	99.78
COG0115	284	IlvE Branched-chain amino acid aminotransferase/4-	99.77
cd01557	279	BCAT_beta_family BCAT_beta_family: Branched-chain	99.75
PRK07849	292	4-amino-4-deoxychorismate lyase; Provisional	99.7
TIGR03461	261	pabC_Proteo aminodeoxychorismate lyase. Members of	99.67
PRK09266	266	hypothetical protein; Provisional	99.66
PRK06092	268	4-amino-4-deoxychorismate lyase; Reviewed	99.65
PLN02782	403	Branched-chain amino acid aminotransferase	99.62
cd01559	249	ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lya	99.59
PLN02259	388	branched-chain-amino-acid aminotransferase 2	99.56
cd00449	256	PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes	99.54
PLN02883	384	Branched-chain amino acid aminotransferase	99.53
PLN03117	355	Branched-chain-amino-acid aminotransferase; Provis	99.49
PRK13357	356	branched-chain amino acid aminotransferase; Provis	99.42
PRK07544	292	branched-chain amino acid aminotransferase; Valida	99.42
KOG0975|consensus	379		99.4
TIGR01122	298	ilvE_I branched-chain amino acid aminotransferase,	99.38
PLN02845	336	Branched-chain-amino-acid aminotransferase-like pr	99.32
PRK06606	306	branched-chain amino acid aminotransferase; Valida	99.32
COG0115	284	IlvE Branched-chain amino acid aminotransferase/4-	99.28
PRK07650	283	4-amino-4-deoxychorismate lyase; Provisional	99.26
cd01557	279	BCAT_beta_family BCAT_beta_family: Branched-chain	99.24
TIGR01123	313	ilvE_II branched-chain amino acid aminotransferase	99.23
PRK13356	286	aminotransferase; Provisional	99.22
PRK12479	299	branched-chain amino acid aminotransferase; Provis	99.16
TIGR01121	276	D_amino_aminoT D-amino acid aminotransferase. Spec	99.11
PRK06680	286	D-amino acid aminotransferase; Reviewed	99.11
PRK09266	266	hypothetical protein; Provisional	99.1
PRK08320	288	branched-chain amino acid aminotransferase; Review	99.08
PRK12400	290	D-amino acid aminotransferase; Reviewed	99.08
cd01559	249	ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lya	99.05
TIGR03461	261	pabC_Proteo aminodeoxychorismate lyase. Members of	99.04
cd00449	256	PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes	99.01
PRK06092	268	4-amino-4-deoxychorismate lyase; Reviewed	99.0
cd01558	270	D-AAT_like D-Alanine aminotransferase (D-AAT_like)	98.96
PRK07849	292	4-amino-4-deoxychorismate lyase; Provisional	98.91
PRK07546	209	hypothetical protein; Provisional	98.35
PRK07101	187	hypothetical protein; Provisional	97.92
PF01063	231	Aminotran_4: Aminotransferase class IV; InterPro:	97.86
PRK07546	209	hypothetical protein; Provisional	97.68
PF01063	231	Aminotran_4: Aminotransferase class IV; InterPro:	97.26
PRK07101	187	hypothetical protein; Provisional	97.17

>PLN02782 Branched-chain amino acid aminotransferase

Probab=100.00  E-value=6.3e-34  Score=270.99  Aligned_cols=146  Identities=34%  Similarity=0.581  Sum_probs=132.5

Q ss_pred             CCCcCCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHH
Q psy16306         18 KPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDR   97 (302)
Q Consensus        18 ~~~~~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~R   97 (302)
                      ..+|++|+||+++||||+.|+|+.+ ..|.||+++|.++++|++.|+|||||||||||||+|++.+|++++||+++|++|
T Consensus        69 ~~~~~~l~fg~~~td~m~~~~~~~~-~~w~ng~ivp~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~d~H~~R  147 (403)
T PLN02782         69 DIDWDNLGFGLVPTDYMYIMKCNRD-GEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENAIR  147 (403)
T ss_pred             cCCccccCCCccccCceEEEEECCC-CcEeCCEEEECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeChHHHHHH
Confidence            4557999999999999999999775 689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306         98 MNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF  166 (302)
Q Consensus        98 l~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f  166 (302)
                      |++||++|+||.++.++|.+++.++|..|+.|||.....++||||+++|++...|+.+..  +.++.++
T Consensus       148 L~~SA~rL~lp~~~~e~l~~~i~~lv~~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~~--~~~~~i~  214 (403)
T PLN02782        148 MRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPAP--EYTFLIY  214 (403)
T ss_pred             HHHHHHHhCcCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCCcCcCCCC--CcEEEEE
Confidence            999999999996699999999999999999999987777999999999988777877653  3444444

>PLN02883 Branched-chain amino acid aminotransferase

Probab=100.00  E-value=6.8e-33  Score=262.22  Aligned_cols=137  Identities=35%  Similarity=0.570  Sum_probs=128.8

Q ss_pred             CCcCCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHH
Q psy16306         19 PEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRM   98 (302)
Q Consensus        19 ~~~~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl   98 (302)
                      .+|++|+||++|||||++++|.++ ..|.+++++|+.+++|||++++||||||||||||+|++.+|++.+||+++|++||
T Consensus        52 ~~~~~l~fg~~~td~m~~~~~~~~-~~w~~~~i~p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL  130 (384)
T PLN02883         52 VDWDKLGFSLVRTDFMFATKSCRD-GNFEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRM  130 (384)
T ss_pred             CCchhcCcCCeecCceEEEEEcCC-CcccCCeEeeCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHH
Confidence            456999999999999999999876 7999999999999999999999999999999999999989999999999999999


Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeecccccccccccccccc
Q psy16306         99 NRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAY  156 (302)
Q Consensus        99 ~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~  156 (302)
                      ++||++|+||.++.++|.++++++|..|+.|||+....++||||++++++...|+++.
T Consensus       131 ~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~wvp~~~~~~lYIRp~v~~~~~~lG~~~~  188 (384)
T PLN02883        131 KIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPLLFGSGASLGVAAA  188 (384)
T ss_pred             HHHHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCC
Confidence            9999999999679999999999999999999998777799999999999888888754

>PLN02259 branched-chain-amino-acid aminotransferase 2

Probab=100.00  E-value=6.7e-33  Score=262.79  Aligned_cols=147  Identities=28%  Similarity=0.531  Sum_probs=132.5

Q ss_pred             CCCCcCCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHH
Q psy16306         17 PKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMD   96 (302)
Q Consensus        17 ~~~~~~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~   96 (302)
                      ...+|++|+||+++||||+.++|+.+ ..|.||+++|.++++|++.|+|||||||||||||+|+..+|++.+||+++|++
T Consensus        54 ~~~~~~~l~f~~~~td~m~~~~~~~~-~~w~~g~ivp~~~~~i~~~drgl~YGdgvFEglkayr~~~G~i~lfr~~~h~~  132 (388)
T PLN02259         54 ADLDWDNLGFGLNPADYMYVMKCSKD-GEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAI  132 (388)
T ss_pred             ccCCccccCCCCcccCceEEEEECCC-CeEECCEEeEchhCeeCchhhHHHhhhhhhhcEEEEECCCCeEeecCcHHHHH
Confidence            34557999999999999999999876 79999999999999999999999999999999999998899888999999999


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306         97 RMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF  166 (302)
Q Consensus        97 Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f  166 (302)
                      ||++||++|+||.++.++|.+++.++|..|+.|||.....++|+||+++|++...|+.+..  ..++.++
T Consensus       133 RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p~~--~~~~~i~  200 (388)
T PLN02259        133 RMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAP--EYTFIVY  200 (388)
T ss_pred             HHHHhHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCcCCCC--CcEEEEE
Confidence            9999999999996699999999999999999999987777999999999988777877542  3444444

>KOG0975|consensus

Probab=99.97  E-value=6.9e-31  Score=240.22  Aligned_cols=153  Identities=51%  Similarity=0.831  Sum_probs=137.8

Q ss_pred             CcCCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHH
Q psy16306         20 EVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMN   99 (302)
Q Consensus        20 ~~~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~   99 (302)
                      +|++|+||.++||||+++.|+.+  .|..|++.|++++++||.+..||||+++|||+|+||+.||++++||++.|++|++
T Consensus        46 d~~~L~fg~~~td~m~~~k~~~~--gw~~~~I~p~gni~~~Paa~vlhy~~~lfEG~KAyRt~d~~i~LFrPd~N~~Rm~  123 (379)
T KOG0975|consen   46 DWDELGFGLVFTDHMLTIKWSED--GWSQGEISPFGNLSLHPAAKVLHYGQGLFEGLKAYRTEDGKIRLFRPDQNMDRML  123 (379)
T ss_pred             CHHHhccCCcccceeEEEecccc--CcCCCCccCcCCEeeChhhhceecchhhccccccccCCCCeEEEecchhhHHHHH
Confidence            34789999999999999999964  5999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeecccccccccccccccccCCCCceEEecccchHHHHHHH
Q psy16306        100 RSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQS  178 (302)
Q Consensus       100 ~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s  178 (302)
                      +||.+++||+++.+++.++++++++.|..|||...+.++||||+++|++..+|+.....  .+  +|....|..+...+
T Consensus       124 ~sA~r~~lP~p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l~Gt~~~Lgv~~~~e--~~--l~vi~spvg~yf~~  198 (379)
T KOG0975|consen  124 RSAERACLPSPDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLLIGTDPVLGVSPAPE--AT--LFVIVSPVGPYFKS  198 (379)
T ss_pred             hhhhhccCCCCCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeeeccCCcccccccCCc--ce--EEEEEcccchhccc
Confidence            99999999999999999999999999999999998999999999999999888876533  33  33334556665554

>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional

Probab=99.96  E-value=9.4e-30  Score=239.72  Aligned_cols=135  Identities=32%  Similarity=0.583  Sum_probs=122.3

Q ss_pred             CcCCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHH
Q psy16306         20 EVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMN   99 (302)
Q Consensus        20 ~~~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~   99 (302)
                      +|++++||.+|||||+.++|+++ .+|+||+++|.+++.||+.|+||+||||||||||+|+..+|++.+|++++|++||+
T Consensus        21 ~~~~~~f~~~~~~~m~~~~~~~~-~~~~ng~~v~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~l~~Hl~RL~   99 (355)
T PLN03117         21 KWEELGFALVPTDYMYVAKCKQG-ESFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQNALRMQ   99 (355)
T ss_pred             CccccCCCccccCceEEEEcCCC-CeEECCEEEEchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeCcHHHHHHHH
Confidence            35899999999999999999875 78999999999999999999999999999999999987788788999999999999


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeeccccccccccccccc
Q psy16306        100 RSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKA  155 (302)
Q Consensus       100 ~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~  155 (302)
                      +||++|+||..+.++|.+++.+++..|+.++|......+|+|++++|.+...|+.+
T Consensus       100 ~Sa~~L~i~~p~~~~l~~~i~~lv~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~  155 (355)
T PLN03117        100 TGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAP  155 (355)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHhccccccCCCCCcEEEEEEEEEecCccCcCC
Confidence            99999999944999999999999999999888765567899999988765555543

>PRK13357 branched-chain amino acid aminotransferase; Provisional

Probab=99.95  E-value=5.9e-28  Score=227.80  Aligned_cols=157  Identities=39%  Similarity=0.706  Sum_probs=132.4

Q ss_pred             EEecCCC--CCCCCCCcCCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCC
Q psy16306          7 VQLCSPE--QLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDG   84 (302)
Q Consensus         7 ~~~~~~~--~~~~~~~~~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g   84 (302)
                      |+.-+++  ..++.++|.++|||++++|||+.+.|+++  .|+||+++|.+++.|++.|+||+||||||||+|+|++.+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~nG~~vp~~~a~is~~Drg~~yGDGvFEtir~~~~~~G   80 (356)
T PRK13357          3 VTLKPNPTSDEKRAIDWANLGFGYVFTDHMVVIDYKDG--KWHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRHKDG   80 (356)
T ss_pred             cccCCCcccccccCCCccccCCCccccceeEEEEecCC--cccCCeEeeCCCceeCcccchhhhcceeeeeEEEEEcCCC
Confidence            4444444  36677778899999999999999999885  5999999999999999999999999999999999987788


Q ss_pred             ceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccC-CCCceeeecccccccccccccccccCCCCce
Q psy16306         85 HIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPH-TTAASLYIRPTLIGTDLFEGMKAYRGVDGHI  163 (302)
Q Consensus        85 ~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~-~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i  163 (302)
                      ++++|++++|++||.+||++|+||+++.++|.+++.+++..|+.+++. ..+..+|+|++++++....|..+..  .+++
T Consensus        81 ~~~~f~l~~Hl~RL~~Sa~~L~i~~~~~~~l~~~i~~li~~n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~--~~~~  158 (356)
T PRK13357         81 SIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYLRPFMIATEPFLGVKPAE--EYIF  158 (356)
T ss_pred             cEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCCCCCccEEEEEEEEccCCcccccCCC--ccEE
Confidence            889999999999999999999999889999999999999999876532 3346789999999887666664332  2444


Q ss_pred             EEec
Q psy16306        164 RMFR  167 (302)
Q Consensus       164 ~~f~  167 (302)
                      .++.
T Consensus       159 ~i~~  162 (356)
T PRK13357        159 CVIA  162 (356)
T ss_pred             EEEE
Confidence            4443

>PRK12479 branched-chain amino acid aminotransferase; Provisional

Probab=99.88  E-value=2.3e-23  Score=192.40  Aligned_cols=111  Identities=18%  Similarity=0.207  Sum_probs=98.7

Q ss_pred             cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306         44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  122 (302)
Q Consensus        44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l  122 (302)
                      .+|+||+++|.+++.|++.|||++|||||||++|+|++     ++|++++|++||.+||++|+|+ +++.+++.+.+.++
T Consensus         5 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~~g-----~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~   79 (299)
T PRK12479          5 YIYMNGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSYGG-----NVFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQT   79 (299)
T ss_pred             EEEECCEEeEHHHCccccccchhheeeeEEEEEEEECC-----EecCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            69999999999999999999999999999999999976     8999999999999999999998 88999999999999


Q ss_pred             HhhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF  166 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f  166 (302)
                      +..|+.       .+.|+|+.++++....|..+....++++.++
T Consensus        80 i~~~~~-------~~~~ir~~v~rg~g~~g~~~~~~~~~~~~i~  116 (299)
T PRK12479         80 LQKNEY-------ADAYIRLIVSRGKGDLGLDPRSCVKPSVIII  116 (299)
T ss_pred             HHHcCC-------CCeEEEEEEEecCCCCCCCCccCCCceEEEE
Confidence            999875       5679999999987667776654445555444

>PRK12400 D-amino acid aminotransferase; Reviewed

Probab=99.86  E-value=6.9e-23  Score=188.46  Aligned_cols=112  Identities=16%  Similarity=0.124  Sum_probs=90.9

Q ss_pred             cceeCCeeccCCC--cccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHH
Q psy16306         44 GGWQAPRVSPLKY--LTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLN  120 (302)
Q Consensus        44 ~~w~~g~~~~~~~--~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~  120 (302)
                      .+|+||+++|.++  +.|++.|||++||||||||||+|++     ++|++++|++||.+||+.|+|+ +++.+++.+.+.
T Consensus         6 ~~~~ng~~v~~~~~~~~i~~~drgl~yGdgvFEtir~~~G-----~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~l~~~l~   80 (290)
T PRK12400          6 FVLWNDAVIDTTKQKTYIELEERGLQFGDGVYEVIRLYKG-----NFHLLDPHITRLYRSMEEIELTLPFSKAELITLLY   80 (290)
T ss_pred             EEEECCEEechHHcCceeccccchhhhcceEEEEEEEECC-----EecccHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence            6999999999994  5599999999999999999999975     8999999999999999999999 889999999999


Q ss_pred             HHHhhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306        121 RLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF  166 (302)
Q Consensus       121 ~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f  166 (302)
                      +++..|+.      ....++|..++++....|..+.....+++.++
T Consensus        81 ~~~~~~~~------~~~~~iri~v~rG~~~~~~~~~~~~~~~~~~~  120 (290)
T PRK12400         81 KLIENNNF------HEDGTIYLQVSRGVQARTHTFSYDVPPTIYAY  120 (290)
T ss_pred             HHHHhcCC------CCCEEEEEEEEeCCCCCCCCCCCCCCcEEEEE
Confidence            99999873      13456777777765444443332223444443

>PRK08320 branched-chain amino acid aminotransferase; Reviewed

Probab=99.86  E-value=1.3e-22  Score=186.40  Aligned_cols=111  Identities=21%  Similarity=0.246  Sum_probs=97.3

Q ss_pred             cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306         44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  122 (302)
Q Consensus        44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l  122 (302)
                      .+|+||++++..++.|++.|||++|||||||++|++++     ++|++++|++||.+||+.|+|+ +++.+++.+.+.++
T Consensus         4 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~~v~~g-----~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~   78 (288)
T PRK08320          4 LIYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAYNG-----RVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLET   78 (288)
T ss_pred             EEEECCEEEEHHHCcccccchhhhhcceEEEEEEEECC-----EeecHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Confidence            48999999999999999999999999999999999976     8999999999999999999998 88999999999999


Q ss_pred             HhhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF  166 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f  166 (302)
                      +..|+.       .+.++|+.++++....|..+.....+.+.++
T Consensus        79 i~~~~~-------~~~~iri~v~rg~g~~g~~~~~~~~~~~~~~  115 (288)
T PRK08320         79 LRKNNL-------RDAYIRLVVSRGVGDLGLDPRKCPKPTVVCI  115 (288)
T ss_pred             HHhcCC-------CCEEEEEEEEECCCcCCCCcccCCCceEEEE
Confidence            999875       5789999999876666766554444454444

>TIGR01121 D_amino_aminoT D-amino acid aminotransferase

Probab=99.86  E-value=5.3e-23  Score=187.95  Aligned_cols=91  Identities=14%  Similarity=0.239  Sum_probs=83.2

Q ss_pred             ceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHHH
Q psy16306         45 GWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLI  123 (302)
Q Consensus        45 ~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~lv  123 (302)
                      +|+||+++|.+++.|++.|+||+||||||||||+|++     ++|++++|++||.+||+.|+|+ +++.+++.+.+.+++
T Consensus         2 ~~~nG~~~~~~~~~i~~~drgl~yGdgvFEtir~~~g-----~~~~l~~H~~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~   76 (276)
T TIGR01121         2 VLWNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVYNG-----KLFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELV   76 (276)
T ss_pred             EEECCEEeEHHHCeecccccccccccEEEEEEEEECC-----EEeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999976     8999999999999999999999 899999999999999


Q ss_pred             hhccccccCCCCceeeeccccccc
Q psy16306        124 QIDQEWVPHTTAASLYIRPTLIGT  147 (302)
Q Consensus       124 ~~Ng~~vp~~~~~s~yirp~~~g~  147 (302)
                      ..|+.       .+.++|..++++
T Consensus        77 ~~~~~-------~~~~irl~~~rg   93 (276)
T TIGR01121        77 EKNNL-------NTGHVYFQVTRG   93 (276)
T ss_pred             HhcCC-------CceEEEEEEEcC
Confidence            99875       445666666654

Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.

>PRK06680 D-amino acid aminotransferase; Reviewed

Probab=99.86  E-value=7.5e-23  Score=187.89  Aligned_cols=112  Identities=12%  Similarity=0.138  Sum_probs=91.9

Q ss_pred             cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306         44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  122 (302)
Q Consensus        44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l  122 (302)
                      .+|+||+++|.+++.|++.|+|++||||||||+|+|++     ++|++++|++||.+||+.|+|+ +++.++|.+++.++
T Consensus         4 ~~~~nG~~~~~~~~~i~~~drg~~yGdGvFEt~r~~~g-----~~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~   78 (286)
T PRK06680          4 IAYVNGRYVNHREARVHIEDRGFQFADGIYEVCAVRDG-----KLVDLDRHLARLFRSLGEIRIAPPMTRAELVEVLREL   78 (286)
T ss_pred             EEEECCEEEEHHHCcccccccccceeeEEEEEEEEECC-----EEechHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            69999999999999999999999999999999999965     8999999999999999999999 88999999999999


Q ss_pred             HhhccccccCCCCceeeeccccccccccccccccc-CCCCceEEec
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYR-GVDGHIRMFR  167 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~-~~~~~i~~f~  167 (302)
                      +..|+.       .+.++|..++++....|..... ...+++.++.
T Consensus        79 ~~~~~~-------~~~~lr~~vtrG~~~~~~~~~~~~~~~~~~i~~  117 (286)
T PRK06680         79 IRRNRV-------REGLVYLQVTRGVARRDHVFPAADVKPSVVVFA  117 (286)
T ss_pred             HHHcCC-------CceEEEEEEEeCCCCCCCCCCCCCCCcEEEEEE
Confidence            999875       3456666666654333333221 2334555543

>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II

Probab=99.85  E-value=2.3e-21  Score=180.18  Aligned_cols=111  Identities=42%  Similarity=0.801  Sum_probs=98.8

Q ss_pred             eeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhh
Q psy16306         46 WQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQI  125 (302)
Q Consensus        46 w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~  125 (302)
                      |+||+++|.+++.|++.|||++||||||||||+|+..+|++.+|++++|++||.+||++|+||+++.++|.+.+.+++..
T Consensus         1 ~~nG~~~~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~~~~~~l~~~l~~~~~~   80 (313)
T TIGR01123         1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKA   80 (313)
T ss_pred             CCCCEEEECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999997667877799999999999999999999977999999999999999


Q ss_pred             ccccccCC-CCceeeecccccccccccccccc
Q psy16306        126 DQEWVPHT-TAASLYIRPTLIGTDLFEGMKAY  156 (302)
Q Consensus       126 Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~  156 (302)
                      |+.+++.. .+..+|+|+++++++...|..+.
T Consensus        81 ~~~~~~~~~~~~~~~ir~~v~~~~~~~g~~~~  112 (313)
T TIGR01123        81 NKDWVPPYGSGASLYLRPFVIGTEPNLGVRPA  112 (313)
T ss_pred             ccccCCCCCCCCcEEEEeEEEecCCccccCCC
Confidence            98765532 35678999999988766666543

Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.

>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids

Probab=99.85  E-value=2.2e-22  Score=183.23  Aligned_cols=109  Identities=16%  Similarity=0.264  Sum_probs=88.6

Q ss_pred             eeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHh
Q psy16306         46 WQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLIQ  124 (302)
Q Consensus        46 w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~lv~  124 (302)
                      |+||+++|.+++.|++.|+|++||||||||||+|++     ++|++++|++||.+||+.|+|| +++.+++.+.+.+++.
T Consensus         1 ~~nG~~~~~~~~~i~~~d~g~~~G~gvFEt~r~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~   75 (270)
T cd01558           1 YLNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVYNG-----KPFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVA   75 (270)
T ss_pred             CcCCeEeEHHHCccccccchhcccceEEEEEEEECC-----EEecHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999976     8999999999999999999999 8899999999999999


Q ss_pred             hccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306        125 IDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF  166 (302)
Q Consensus       125 ~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f  166 (302)
                      .|+.     ....+++++  +.+....|..+.....+.+.++
T Consensus        76 ~~~~-----~~~~~~~~~--t~g~~~~~~~~~~~~~~~~~i~  110 (270)
T cd01558          76 KNEG-----GEGDVYIQV--TRGVGPRGHDFPKCVKPTVVII  110 (270)
T ss_pred             HcCC-----CCceEEEEE--EeCCCccCCCCCCCCCCEEEEE
Confidence            9864     234566665  4333334444433333444443

It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.

>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I

Probab=99.83  E-value=9.5e-21  Score=174.90  Aligned_cols=113  Identities=23%  Similarity=0.401  Sum_probs=98.7

Q ss_pred             eeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHh
Q psy16306         46 WQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLIQ  124 (302)
Q Consensus        46 w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~lv~  124 (302)
                      |+||+++|.+++.|++.|+|++|||||||++|+|++++| .++|++++|++||.+||++|+|+ +++.++|.+++.+++.
T Consensus         1 ~~ng~~v~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~-~~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~   79 (298)
T TIGR01122         1 WMDGEFVDWEDAKVHVLTHALHYGTGVFEGIRAYDTDKG-PAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLR   79 (298)
T ss_pred             CcCCEEEEhhhcccChhhhhhhccceEEEEEEEEcCCCc-ceeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999998775 58999999999999999999999 8899999999999999


Q ss_pred             hccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306        125 IDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF  166 (302)
Q Consensus       125 ~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f  166 (302)
                      .|+.       .+.|+|++++++....|..+.....+++.++
T Consensus        80 ~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~  114 (298)
T TIGR01122        80 KNNL-------RSAYIRPLVFRGDGDLGLNPRAGYKPDVIIA  114 (298)
T ss_pred             hcCC-------CCEEEEEEEEEccCCCCcCCCCCCCceEEEE
Confidence            9985       5789999999887666665533334454444

Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.

>PRK07544 branched-chain amino acid aminotransferase; Validated

Probab=99.82  E-value=2.4e-20  Score=171.82  Aligned_cols=101  Identities=23%  Similarity=0.395  Sum_probs=92.6

Q ss_pred             cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306         44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  122 (302)
Q Consensus        44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l  122 (302)
                      .+|+||+++|.+++.|++.|+||+||||||||+|+|++     ++|++++|++||.+||+.|+|+ +++.+++.+++.++
T Consensus        10 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~~g-----~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~   84 (292)
T PRK07544         10 FIWMDGELVPWRDAKVHVLTHGLHYASSVFEGERAYGG-----KIFKLREHSERLRRSAELLDFEIPYSVAEIDAAKKET   84 (292)
T ss_pred             eEEECCEEEEhHHCccChhhhHhhhcceeEEeeEeeCC-----cccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            68999999999999999999999999999999999976     8999999999999999999999 88999999999999


Q ss_pred             HhhccccccCCCCceeeecccccccccccccccc
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAY  156 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~  156 (302)
                      +..|+.       .+.|+|++++++....|..+.
T Consensus        85 i~~~~~-------~~~~ir~~v~rg~~~~g~~~~  111 (292)
T PRK07544         85 LAANGL-------TDAYVRPVAWRGSEMMGVSAQ  111 (292)
T ss_pred             HHhcCC-------CCeEEEEEEEecCCCCCcCCC
Confidence            999985       567999999998765565543

>PRK06606 branched-chain amino acid aminotransferase; Validated

Probab=99.81  E-value=1e-19  Score=168.72  Aligned_cols=105  Identities=24%  Similarity=0.409  Sum_probs=94.9

Q ss_pred             cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306         44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  122 (302)
Q Consensus        44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l  122 (302)
                      .+|+||+++|.+++.|++.|+||+|||||||++|+|++.+|+ ++|++++|++||.+||+.|+|+ +++.++|.+.+.++
T Consensus         8 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEtir~~~g~~~~-~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~   86 (306)
T PRK06606          8 YIWFNGELVPWEDAKVHVLTHALHYGTGVFEGIRAYDTPKGP-AIFRLREHTKRLFNSAKILRMEIPYSVDELMEAQREV   86 (306)
T ss_pred             cEEECCEEEEhHHcccChhhhhhhhcceeEEEEEEecCCCCC-eeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            689999999999999999999999999999999999986553 4999999999999999999999 88999999999999


Q ss_pred             HhhccccccCCCCceeeecccccccccccccccc
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAY  156 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~  156 (302)
                      +..|+.       .+.|+|++++++....|..+.
T Consensus        87 i~~~~~-------~~~~ir~~v~rg~~~~g~~~~  113 (306)
T PRK06606         87 VRKNNL-------KSAYIRPLVFVGDEGLGVRPH  113 (306)
T ss_pred             HHhcCC-------CCEEEEEEEEecCCccCcCCC
Confidence            999985       578999999988766566533

>PLN02845 Branched-chain-amino-acid aminotransferase-like protein

Probab=99.79  E-value=2.1e-19  Score=168.36  Aligned_cols=110  Identities=14%  Similarity=0.131  Sum_probs=92.8

Q ss_pred             ceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHHH
Q psy16306         45 GWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLI  123 (302)
Q Consensus        45 ~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~lv  123 (302)
                      +|+||+++|.+++.|++.|+|++|||||||+||+++|     ++|++++|++||.+||+.|+|+ +++.+++.+++.+++
T Consensus        43 ~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~~G-----~~~~le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i  117 (336)
T PLN02845         43 SVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIRDG-----HLYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTV  117 (336)
T ss_pred             EEECCEEccHHHCcccccccceeecceEEEEEEEECC-----EEcCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999976     8999999999999999999999 889999999999999


Q ss_pred             hhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306        124 QIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF  166 (302)
Q Consensus       124 ~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f  166 (302)
                      ..|+.       .+.++|..++++....++.+.....+++.++
T Consensus       118 ~~~~~-------~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~  153 (336)
T PLN02845        118 AASGC-------RNGSLRYWLSAGPGGFSLSPSGCSEPAFYAV  153 (336)
T ss_pred             HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEE
Confidence            99875       4668888888765433443333333444443

>PRK13356 aminotransferase; Provisional

Probab=99.79  E-value=3.1e-19  Score=163.89  Aligned_cols=95  Identities=22%  Similarity=0.266  Sum_probs=87.2

Q ss_pred             cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306         44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  122 (302)
Q Consensus        44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l  122 (302)
                      .+|+||++++.+++.|++.|+|++|||||||++|+|++     ++|++++|++||.+||+.|+|+ +++.++|.+.+.++
T Consensus         8 ~~~~nG~~~~~~~~~i~~~drg~~yGdgvFEtir~~~g-----~~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~   82 (286)
T PRK13356          8 WTFFDGEWHEGNVPIMGPADHAAWLGSTVFDGARAFEG-----VTPDLDLHCARVNRSAEALGLKPTVSAEEIEALAREG   82 (286)
T ss_pred             eEEECCEEcchhhcccccccchhhhcceeEEEEEEecC-----CCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            58999999999999999999999999999999999976     8999999999999999999998 88999999999999


Q ss_pred             HhhccccccCCCCceeeeccccccccc
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDL  149 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~  149 (302)
                      +..|+.      ..+.|+|++++++..
T Consensus        83 i~~~~~------~~~~~ir~~v~rg~g  103 (286)
T PRK13356         83 LKRFDP------DTALYIRPMYWAEDG  103 (286)
T ss_pred             HHHcCC------CCcEEEEEEEEeccC
Confidence            999864      246899999997643

>PRK07650 4-amino-4-deoxychorismate lyase; Provisional

Probab=99.78  E-value=3.9e-19  Score=163.04  Aligned_cols=110  Identities=15%  Similarity=0.211  Sum_probs=94.1

Q ss_pred             ceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHHH
Q psy16306         45 GWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLI  123 (302)
Q Consensus        45 ~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~lv  123 (302)
                      +|+||+++|.+++.+++.|+|++|||||||++|+|+|     ++|++++|++||.+||+.|+|+ +++.+++.+.+.+++
T Consensus         2 ~~~nG~~~~~~~~~v~~~drg~~~GdgvFEt~r~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~l~~~~   76 (283)
T PRK07650          2 IYVNGQYVEEEEARISPFDHGYLYGLGVFETFRIYNG-----HPFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLL   76 (283)
T ss_pred             EEECCEEeEHHHCeecccccccccccEEEEEEEEECC-----EEEcHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999976     8999999999999999999999 889999999999999


Q ss_pred             hhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306        124 QIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF  166 (302)
Q Consensus       124 ~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f  166 (302)
                      ..|+.       .+.++|..++++....|..+.....+++.++
T Consensus        77 ~~~~~-------~~~~iRl~v~rg~~~~~~~~~~~~~~~~~i~  112 (283)
T PRK07650         77 EKNGL-------ENAYVRFNVSAGIGEIGLQTEMYEEPTVIVY  112 (283)
T ss_pred             HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEE
Confidence            98874       5789999999875555554332233444443

>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.77  E-value=1.3e-18  Score=159.67  Aligned_cols=101  Identities=31%  Similarity=0.486  Sum_probs=93.2

Q ss_pred             cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306         44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  122 (302)
Q Consensus        44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l  122 (302)
                      .+|.||+++|.+++++++.|+++|||++||||+|+|++     .+|++++|++||++||+.|+|| +++.+++..+...+
T Consensus         3 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~vFE~~r~~~g-----~~~~l~~H~~RL~~Sa~~l~~~~~~~~~~~~~~~~~~   77 (284)
T COG0115           3 KIWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNG-----KLFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLL   77 (284)
T ss_pred             eEeECCEEccCcccccCcccceeccccceeEEEEEeCC-----cccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            58999999999999999999999999999999999984     8999999999999999999999 89999999999999


Q ss_pred             HhhccccccCCCCceeeeccccccccccccccc
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKA  155 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~  155 (302)
                      +..|+..      ..+|+||++++.+...|+++
T Consensus        78 ~~~~~~~------~~~y~r~~~~~~~~~~~~~~  104 (284)
T COG0115          78 LAKNNLV------PGLYIRPLVRGGGGGLGVRD  104 (284)
T ss_pred             HHhhCCC------CceEEEEEEEeecCCCCcCC
Confidence            9888752      33999999999888888777

>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate

Probab=99.75  E-value=4.3e-18  Score=155.82  Aligned_cols=99  Identities=51%  Similarity=0.907  Sum_probs=87.7

Q ss_pred             ccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCce
Q psy16306         58 TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAAS  137 (302)
Q Consensus        58 ~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s  137 (302)
                      +|++.|+|++|||||||++|+|++.||+.++|++++|++||.+||+.|+|++++.++|.+++.+++..|+.|.|.....+
T Consensus         1 ~i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~~i~~~~~~~~~~~~~~   80 (279)
T cd01557           1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGAS   80 (279)
T ss_pred             CcCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCC
Confidence            47999999999999999999998666666899999999999999999999988999999999999999998877655567


Q ss_pred             eeecccccccccccccccc
Q psy16306        138 LYIRPTLIGTDLFEGMKAY  156 (302)
Q Consensus       138 ~yirp~~~g~~~~~g~~~~  156 (302)
                      .|+|++++++....|..+.
T Consensus        81 ~~ir~~v~rg~~~~g~~~~   99 (279)
T cd01557          81 LYIRPFIFGTDPQLGVSPA   99 (279)
T ss_pred             EEEEEEEEeccccCCcCCC
Confidence            9999999998766665543

The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.

>PRK07849 4-amino-4-deoxychorismate lyase; Provisional

Probab=99.70  E-value=3e-17  Score=151.23  Aligned_cols=95  Identities=20%  Similarity=0.148  Sum_probs=83.5

Q ss_pred             cceeCC-----eeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHH
Q psy16306         44 GGWQAP-----RVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQC  118 (302)
Q Consensus        44 ~~w~~g-----~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~  118 (302)
                      .+|+||     +++|.+++.|++.|+|++||||||||||++++     ++|.+++|++||.+||+.|+|+..+.+++.++
T Consensus         8 ~~~~ng~~~~~~~~~~~~a~i~~~drg~~~GdgvFEt~rv~~g-----~i~~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~   82 (292)
T PRK07849          8 VVTLDPYGGSERVHDPSAPLLHADDLAAVRGDGVFETLLVRDG-----RPCNLEAHLERLARSAALLDLPEPDLDRWRRA   82 (292)
T ss_pred             EEEECCCCccceEechHHCCccchhcchhccceEEEEEEEECC-----EECCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence            699999     99999999999999999999999999999976     89999999999999999999994489999999


Q ss_pred             HHHHHhhccccccCCCCceeeecccccccc
Q psy16306        119 LNRLIQIDQEWVPHTTAASLYIRPTLIGTD  148 (302)
Q Consensus       119 ~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~  148 (302)
                      +.+++..|+.     .....++|.+++.+.
T Consensus        83 i~~~v~~~~~-----~~~~~~iRl~v~~g~  107 (292)
T PRK07849         83 VELAIEEWRA-----PEDEAALRLVYSRGR  107 (292)
T ss_pred             HHHHHHHhcC-----CCCCeEEEEEEeCCC
Confidence            9999998741     014567787766653

>TIGR03461 pabC_Proteo aminodeoxychorismate lyase

Probab=99.67  E-value=2.1e-16  Score=143.19  Aligned_cols=92  Identities=15%  Similarity=0.214  Sum_probs=76.8

Q ss_pred             eeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhh
Q psy16306         46 WQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQI  125 (302)
Q Consensus        46 w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~  125 (302)
                      |+||++    ++.|++.|+|++||+|||||+|+++|     ++|++++|++||.+||+.|+||..+.+++.+.+.+++..
T Consensus         1 ~~nG~~----~~~i~~~d~g~~~G~gvFEt~r~~~G-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~~~~~~~~   71 (261)
T TIGR03461         1 WVNGVL----QTQISVSDRGLQYGDGCFTTAKVRNG-----KIELLDLHLERLQDAAARLGIPLPDWDALREEMAQLAAG   71 (261)
T ss_pred             CcCCcc----cCccCcccccccccceeEEEEEEECC-----EeccHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Confidence            889995    78899999999999999999999975     899999999999999999999944899999999999887


Q ss_pred             ccccccCCCCceeeeccccccccccccccc
Q psy16306        126 DQEWVPHTTAASLYIRPTLIGTDLFEGMKA  155 (302)
Q Consensus       126 Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~  155 (302)
                      +.         +.++|..++.+....|..+
T Consensus        72 ~~---------~~~ir~~v~~g~~~~~~~~   92 (261)
T TIGR03461        72 YS---------LGVLKVIISRGSGGRGYSP   92 (261)
T ss_pred             CC---------CeEEEEEEecCCCCCCCCC
Confidence            53         3466766666543334443

Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).

>PRK09266 hypothetical protein; Provisional

Probab=99.66  E-value=2.8e-16  Score=142.92  Aligned_cols=91  Identities=15%  Similarity=0.112  Sum_probs=78.4

Q ss_pred             cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy16306         44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLI  123 (302)
Q Consensus        44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv  123 (302)
                      .+|+||+++|.+++.     +|++|||||||+||++++     ++|++++|++||.+||+.|.+++++.+++.+++.+++
T Consensus         4 ~~~~nG~~~~~~~a~-----~~~~~GdgvFETir~~~g-----~~~~l~~Hl~RL~~sa~~l~~~~~~~~~l~~~l~~~~   73 (266)
T PRK09266          4 LIELNGRPATAEDLA-----ALALANYGHFTSMQVRDG-----RVRGLDLHLQRLRRASRELFGAALDDDRVRAQLRAAL   73 (266)
T ss_pred             EEEECCEECCHHHhh-----hHhhccceEEEEEEEECC-----EEcCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            689999999999987     499999999999999975     8999999999999999999777889999999999998


Q ss_pred             hhccccccCCCCceeeecccccccccccc
Q psy16306        124 QIDQEWVPHTTAASLYIRPTLIGTDLFEG  152 (302)
Q Consensus       124 ~~Ng~~vp~~~~~s~yirp~~~g~~~~~g  152 (302)
                       .++.       .+.++|+.++++....|
T Consensus        74 -~~~~-------~~~~ir~~v~r~~g~~~   94 (266)
T PRK09266         74 -AAGP-------ADASVRVTVFAPDFDFR   94 (266)
T ss_pred             -hcCC-------CcEEEEEEEEecCcccC
Confidence             4443       46799999886543333

>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed

Probab=99.65  E-value=4.8e-16  Score=141.45  Aligned_cols=104  Identities=12%  Similarity=0.090  Sum_probs=81.1

Q ss_pred             ceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q psy16306         45 GWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQ  124 (302)
Q Consensus        45 ~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~  124 (302)
                      +|+||++    ++.|++.|+|++|||||||++|++++     ++|++++|++||.+||+.|+||..+.+++.+.+.+++ 
T Consensus         2 ~~~nG~~----~~~i~~~d~g~~~GdgvFEtir~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~l~~~~-   71 (268)
T PRK06092          2 FWINGQP----QESLSVSDRSTQYGDGCFTTARVRDG-----QVSLLSRHLQRLQDACERLAIPLDDWAQLEQEMKQLA-   71 (268)
T ss_pred             EEECCcC----cCccCccccccccccceeeEEEEECC-----eeccHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-
Confidence            6999996    68899999999999999999999976     8999999999999999999999446778888777776 


Q ss_pred             hccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306        125 IDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF  166 (302)
Q Consensus       125 ~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f  166 (302)
                       ++.       .+.++|..++.+....|..+.....+.+.++
T Consensus        72 -~~~-------~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~  105 (268)
T PRK06092         72 -AEL-------ENGVLKVIISRGSGGRGYSPAGCAAPTRILS  105 (268)
T ss_pred             -hhC-------CCeEEEEEEEccCCCCCCCCCCCCCCeEEEE
Confidence             222       3557788887765545555444444444444

>PLN02782 Branched-chain amino acid aminotransferase

Probab=99.62  E-value=5.7e-17  Score=154.87  Aligned_cols=171  Identities=24%  Similarity=0.411  Sum_probs=126.2

Q ss_pred             HhhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q psy16306        123 IQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQ  201 (302)
Q Consensus       123 v~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~  201 (302)
                      -|.|+.++|.+ ...++..|.++||+++|||++++++.++.+.+|+|++|++||.+||++++||.++.+++.+++..++.
T Consensus        95 ~w~ng~ivp~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~d~H~~RL~~SA~rL~lp~~~~e~l~~~i~~lv~  174 (403)
T PLN02782         95 EFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENAIRMRNGAERMCMPAPTVEQFVEAVKETVL  174 (403)
T ss_pred             cEeCCEEEECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHH
Confidence            47899999976 47889999999999999999999888889999999999999999999999995599999999999999


Q ss_pred             hcccccccCCCceeeecceeeccccccccccccCCCCcccc--------CCchhhHHHHHHHH-HHhCCC----------
Q psy16306        202 IDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRM--------FRPEMNMDRMNRSA-LRAGLP----------  262 (302)
Q Consensus       202 ~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~i--------f~~~~h~~RL~~Sa-~~r~~~----------  262 (302)
                      .|+.|+|.....++|+|++++|++...|+.+....  ...+        |.......+|..+. ..|..+          
T Consensus       175 ~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~~~~--~~~i~~~p~~~~~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~~  252 (403)
T PLN02782        175 ANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPAPEY--TFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGGVKTIG  252 (403)
T ss_pred             hccccCCCCCCccEEEEEEEEecCCCcCcCCCCCc--EEEEEEEECccccccCCccEEEEEeCceeecCCCCCcccchhh
Confidence            99999997654589999999998777777643211  1111        11000112233332 223222          


Q ss_pred             CCCH------HHHHHHHHHHHHHc---CCccCCCCcccEEEE
Q psy16306        263 QFDP------EEMIQCLNRLIQID---QEWVPHTTAASLYIR  295 (302)
Q Consensus       263 ~~~~------~~l~~~~~e~l~~n---~~~v~e~~~~n~yir  295 (302)
                      ++..      +...++++++|.+|   +|+|+|++.+|+|+.
T Consensus       253 nY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v  294 (403)
T PLN02782        253 NYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIV  294 (403)
T ss_pred             hHHHHHHHHHHHHHcCCCEEEEEeCCCCCEEEEcCcEEEEEE
Confidence            1111      01134456667777   589999999999986

>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate

Probab=99.59  E-value=3.4e-15  Score=134.40  Aligned_cols=91  Identities=24%  Similarity=0.309  Sum_probs=75.5

Q ss_pred             chhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeecc
Q psy16306         63 AKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRP  142 (302)
Q Consensus        63 ~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp  142 (302)
                      |+|++|||||||++|+|++     ++|++++|++||.+||+.|+||+++.+++.+++.+++..|+.       .+.++|.
T Consensus         1 Drg~~~GdgvFEt~~~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~   68 (249)
T cd01559           1 DRGFAYGDGVFETMRALDG-----RLFLLDAHLARLERSARRLGIPEPDLPRLRAALESLLAANDI-------DEGRIRL   68 (249)
T ss_pred             CCcccccceeEEEEEEECC-----EEccHHHHHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHhCCC-------CceEEEE
Confidence            6899999999999999976     899999999999999999999988999999999999999875       4679999


Q ss_pred             cccccccccccccccCCCCceEE
Q psy16306        143 TLIGTDLFEGMKAYRGVDGHIRM  165 (302)
Q Consensus       143 ~~~g~~~~~g~~~~~~~~~~i~~  165 (302)
                      .++++....|..+.....+.+.+
T Consensus        69 ~v~rg~~~~~~~~~~~~~~~~~i   91 (249)
T cd01559          69 ILSRGPGGRGYAPSVCPGPALYV   91 (249)
T ss_pred             EEecCCCCCCCCCCCCCCCEEEE
Confidence            98876544455444333344433

Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.

>PLN02259 branched-chain-amino-acid aminotransferase 2

Probab=99.56  E-value=4e-16  Score=148.40  Aligned_cols=111  Identities=28%  Similarity=0.462  Sum_probs=98.9

Q ss_pred             HHhhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy16306        122 LIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLI  200 (302)
Q Consensus       122 lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii  200 (302)
                      -.|.|+.++|.. ...++..|.++||+++|||+++++..++.+.+|++++|++||.+||++++||.++.+++.+++..++
T Consensus        80 ~~w~~g~ivp~~~~~i~~~drgl~YGdgvFEglkayr~~~G~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~lv  159 (388)
T PLN02259         80 GEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTA  159 (388)
T ss_pred             CeEECCEEeEchhCeeCchhhHHHhhhhhhhcEEEEECCCCeEeecCcHHHHHHHHHhHHHhCCCCcCHHHHHHHHHHHH
Confidence            357889999976 5899999999999999999999987778888999999999999999999999558999999999999


Q ss_pred             HhcccccccCCCceeeecceeecccccccccc
Q psy16306        201 QIDQEWVPHTTAASLYIRPTLIGTDLFEGMKA  232 (302)
Q Consensus       201 ~~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~  232 (302)
                      ..|+.|+|.....++|+||+++|.+...|+.+
T Consensus       160 ~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p  191 (388)
T PLN02259        160 LANKRWVPPAGKGTLYIRPLLMGSGPILGLGP  191 (388)
T ss_pred             HhccccCCCCCCceEEEEEEEEecCCccCcCC
Confidence            99999999765458899999998877777764

>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV)

Probab=99.54  E-value=1.4e-14  Score=130.64  Aligned_cols=92  Identities=39%  Similarity=0.626  Sum_probs=77.0

Q ss_pred             chhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhhccccccCCCCceeeec
Q psy16306         63 AKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR  141 (302)
Q Consensus        63 ~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yir  141 (302)
                      |+|++|||||||+||++++     ++|++++|++||.+||+.|+|+ +++.+++.+.+.+++..|+.       .+.++|
T Consensus         1 drg~~~GdgvFEt~r~~~g-----~~~~l~~Hl~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~ir   68 (256)
T cd00449           1 DRGLHYGDGVFEGLRAGKG-----RLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANNG-------ASLYIR   68 (256)
T ss_pred             CceeeccceEEEEEEEcCc-----EEEChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CCEEEE
Confidence            6899999999999999865     8999999999999999999999 89999999999999998775       578999


Q ss_pred             ccccccccccccccccCCCCceEEe
Q psy16306        142 PTLIGTDLFEGMKAYRGVDGHIRMF  166 (302)
Q Consensus       142 p~~~g~~~~~g~~~~~~~~~~i~~f  166 (302)
                      ..++++....|..+.....+++.++
T Consensus        69 ~~v~~g~~~~~~~~~~~~~~~~~~~   93 (256)
T cd00449          69 PLLTRGVGGLGVAPPPSPEPTFVVF   93 (256)
T ss_pred             EEEEecccccCCCCCCCCCcEEEEE
Confidence            9999876555554433334444443

This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.

>PLN02883 Branched-chain amino acid aminotransferase

Probab=99.53  E-value=2.1e-15  Score=143.20  Aligned_cols=172  Identities=23%  Similarity=0.364  Sum_probs=122.7

Q ss_pred             hhccccccCCC-CceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Q psy16306        124 QIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQI  202 (302)
Q Consensus       124 ~~Ng~~vp~~~-~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~  202 (302)
                      |.++.++|... ..+.-.+.++||+++|||++++++.++.+..|+++.|++||.+||++++||.++.+++.++++.++..
T Consensus        78 w~~~~i~p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~  157 (384)
T PLN02883         78 FEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLA  157 (384)
T ss_pred             ccCCeEeeCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Confidence            55666667653 67788889999999999999998888899999999999999999999999966999999999999999


Q ss_pred             cccccccCCCceeeecceeeccccccccccccCCC-----Cc-cccCCchhhHHHHHHHHH-HhCCC----------CCC
Q psy16306        203 DQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVD-----GH-IRMFRPEMNMDRMNRSAL-RAGLP----------QFD  265 (302)
Q Consensus       203 ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~-----~~-~~if~~~~h~~RL~~Sa~-~r~~~----------~~~  265 (302)
                      |+.|||.....++|+|+++++++...|+++.....     .+ ...|.......++..+.+ .|..+          ++.
T Consensus       158 n~~wvp~~~~~~lYIRp~v~~~~~~lG~~~~~~~~~~i~~~p~~~y~~~g~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa  237 (384)
T PLN02883        158 NRRWVPPPGKGSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYG  237 (384)
T ss_pred             ccccCCCCCCceEEEEEEEEecCCccCCCCCCCeEEEEEEEecccccccCcceEEEEECccccccCCCCCcccchhhhHH
Confidence            99999976545899999999998877876432111     00 001110001233333332 22111          011


Q ss_pred             H------HHHHHHHHHHHHHc-C--CccCCCCcccEEEE
Q psy16306        266 P------EEMIQCLNRLIQID-Q--EWVPHTTAASLYIR  295 (302)
Q Consensus       266 ~------~~l~~~~~e~l~~n-~--~~v~e~~~~n~yir  295 (302)
                      .      +...++++++|.+| +  ++|.|++.+|+|+.
T Consensus       238 ~~lla~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF~v  276 (384)
T PLN02883        238 PVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLV  276 (384)
T ss_pred             HHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEE
Confidence            1      11134566777776 3  59999999999986

>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional

Probab=99.49  E-value=3.6e-15  Score=140.85  Aligned_cols=172  Identities=23%  Similarity=0.351  Sum_probs=120.9

Q ss_pred             HHhhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy16306        122 LIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLI  200 (302)
Q Consensus       122 lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii  200 (302)
                      .++.||.++|.+ ...++++|+++||+++|||+++++..++.+.+|++++|++||.+||+.++|+.++.+++.+.+..++
T Consensus        44 ~~~~ng~~v~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~l~~Hl~RL~~Sa~~L~i~~p~~~~l~~~i~~lv  123 (355)
T PLN03117         44 ESFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTV  123 (355)
T ss_pred             CeEECCEEEEchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeCcHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            468999999985 6899999999999999999999965567778999999999999999999999448999999999999


Q ss_pred             HhcccccccCCCceeeecceeeccccccccccccCCCCccccCC-------chhhHHHHHHHH-HHhCCCCCCH------
Q psy16306        201 QIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFR-------PEMNMDRMNRSA-LRAGLPQFDP------  266 (302)
Q Consensus       201 ~~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~-------~~~h~~RL~~Sa-~~r~~~~~~~------  266 (302)
                      ..|+.|+|.......|+++.++|.+...|..+..  +....++.       ....+.++..+. .++..++...      
T Consensus       124 ~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~~~--~~~~~i~~~p~~~~~~~~~gi~l~~~~~~~r~~~~~l~~~K~~~  201 (355)
T PLN03117        124 LANKKWVPPPGKGTLYIRPLLIGSGAVLGVAPAP--EYTFLIYASPVGNYHKASSGLNLKVDHKHRRAHSGGTGGVKSCT  201 (355)
T ss_pred             HhccccccCCCCCcEEEEEEEEEecCccCcCCCC--CcEEEEEEEeccccccCCCCEEEEEcCceEeCCCCCccchhhhh
Confidence            9999888755434679999987765444443211  11011110       001233444433 2232211000      


Q ss_pred             HHH----------HHHHHHHHHHcC---CccCCCCcccEEEE
Q psy16306        267 EEM----------IQCLNRLIQIDQ---EWVPHTTAASLYIR  295 (302)
Q Consensus       267 ~~l----------~~~~~e~l~~n~---~~v~e~~~~n~yir  295 (302)
                      ..+          .++++++|.+|.   |+|+|++.+|+|+.
T Consensus       202 nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNlF~v  243 (355)
T PLN03117        202 NYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFIL  243 (355)
T ss_pred             hhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEE
Confidence            111          244566677763   59999999999986

>PRK13357 branched-chain amino acid aminotransferase; Provisional

Probab=99.42  E-value=4.4e-14  Score=133.55  Aligned_cols=170  Identities=25%  Similarity=0.428  Sum_probs=119.3

Q ss_pred             hhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Q psy16306        124 QIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQI  202 (302)
Q Consensus       124 ~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~  202 (302)
                      +.||.++|.+ +..++.+|+++||+++||+++.+++.++.+.+|++++|++||.+||+.++|++++.+++++.+..++..
T Consensus        42 ~~nG~~vp~~~a~is~~Drg~~yGDGvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~L~i~~~~~~~l~~~i~~li~~  121 (356)
T PRK13357         42 WHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKA  121 (356)
T ss_pred             ccCCeEeeCCCceeCcccchhhhcceeeeeEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence            8899999976 689999999999999999999987656777899999999999999999999977899999999999999


Q ss_pred             cccccc-cCCCceeeecceeeccccccccccccCCCCccccCC--chh------hHHHHHHH-HHHhCCCC-CC-----H
Q psy16306        203 DQEWVP-HTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFR--PEM------NMDRMNRS-ALRAGLPQ-FD-----P  266 (302)
Q Consensus       203 ng~~vp-~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~--~~~------h~~RL~~S-a~~r~~~~-~~-----~  266 (302)
                      |+.+++ .......|+++.++++....|..+...+  ...++.  ...      .+.++..+ .+.|..++ ..     .
T Consensus       122 n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~~~--~~~i~~~~~~~~~~~~~~~v~l~~~~~~~r~~~~~l~~~Kt~~  199 (356)
T PRK13357        122 DRDWVPPYGEGASLYLRPFMIATEPFLGVKPAEEY--IFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGAAKVGG  199 (356)
T ss_pred             cccccCCCCCCccEEEEEEEEccCCcccccCCCcc--EEEEEEEechhhcccCCCceEEEEcCCeEecCCCCcchhhccc
Confidence            987652 2222467999988877655555322111  111110  000      12233333 23333221 10     0


Q ss_pred             HHH----------HHHHHHHHHHc---CCccCCCCcccEEEE
Q psy16306        267 EEM----------IQCLNRLIQID---QEWVPHTTAASLYIR  295 (302)
Q Consensus       267 ~~l----------~~~~~e~l~~n---~~~v~e~~~~n~yir  295 (302)
                      ..+          .++++++|.+|   +|+|+|++.+|+|+.
T Consensus       200 nyl~~vla~~eA~~~G~deaL~ld~~~~G~V~E~s~sNlF~v  241 (356)
T PRK13357        200 NYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFI  241 (356)
T ss_pred             ccHHHHHHHHHHHHCCCCEEEEEcCCCCCEEEEcCcEEEEEE
Confidence            111          24566778887   589999999999985

>PRK07544 branched-chain amino acid aminotransferase; Validated

Probab=99.42  E-value=1.9e-14  Score=132.64  Aligned_cols=161  Identities=20%  Similarity=0.340  Sum_probs=116.7

Q ss_pred             HHhhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306        122 LIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRL  199 (302)
Q Consensus       122 lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~i  199 (302)
                      .++.||.++|.. ...++.+|+++||+++||+++.+++     .+|++++|++||.+||+.++|+ +.+.+.+.+.+..+
T Consensus        10 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~~g-----~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~   84 (292)
T PRK07544         10 FIWMDGELVPWRDAKVHVLTHGLHYASSVFEGERAYGG-----KIFKLREHSERLRRSAELLDFEIPYSVAEIDAAKKET   84 (292)
T ss_pred             eEEECCEEEEhHHCccChhhhHhhhcceeEEeeEeeCC-----cccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            478999999975 6899999999999999999999988     7999999999999999999999 78899999999999


Q ss_pred             HHhcccccccCCCceeeecceeeccccccccccccCCCCccc--------cCCch--hhHHHHHHHHHHhCCC-CCC---
Q psy16306        200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIR--------MFRPE--MNMDRMNRSALRAGLP-QFD---  265 (302)
Q Consensus       200 i~~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~--------if~~~--~h~~RL~~Sa~~r~~~-~~~---  265 (302)
                      +..|+.       ...+++..++++....|....... ....        .+..+  ..+.|+..+.+++..+ ..+   
T Consensus        85 i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~-~~~~v~~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~  156 (292)
T PRK07544         85 LAANGL-------TDAYVRPVAWRGSEMMGVSAQQNK-IHLAIAAWEWPSYFDPEAKMKGIRLDIAKWRRPDPETAPSAA  156 (292)
T ss_pred             HHhcCC-------CCeEEEEEEEecCCCCCcCCCCCC-cEEEEEEeccccccCccccCCCEEEEEeEEEcCCCCCcCHhh
Confidence            988864       256888888776544444322110 0000        01101  1245565555555433 211   


Q ss_pred             -------HHHH------HHHHHHHHHHc-CCccCCCCcccEEEE
Q psy16306        266 -------PEEM------IQCLNRLIQID-QEWVPHTTAASLYIR  295 (302)
Q Consensus       266 -------~~~l------~~~~~e~l~~n-~~~v~e~~~~n~yir  295 (302)
                             ..-+      .++++|+|..| +|+|+|++.+|+|+.
T Consensus       157 k~~~~yl~~vla~~~A~~~G~deal~ld~~g~V~E~~~sNlf~v  200 (292)
T PRK07544        157 KAAGLYMICTISKHAAEAKGYADALMLDYRGYVAEATGANIFFV  200 (292)
T ss_pred             hhhcccHHHHHHHHHHHHcCCCeEEEECCCCCEEEcCceEEEEE
Confidence                   1111      24566778888 799999999999986

>KOG0975|consensus

Probab=99.40  E-value=2.2e-13  Score=125.55  Aligned_cols=153  Identities=35%  Similarity=0.574  Sum_probs=111.7

Q ss_pred             ccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcccccccCCCceeeeccee
Q psy16306        142 PTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTL  221 (302)
Q Consensus       142 p~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~ng~~vp~~~~~s~ylr~~l  221 (302)
                      .++|+.+.|+|+++|++.++.|.+|||+.|+.|+.+||.++.||+++.+++.++|+.+++.|.+|||.....++|+||.+
T Consensus        89 vlhy~~~lfEG~KAyRt~d~~i~LFrPd~N~~Rm~~sA~r~~lP~p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l  168 (379)
T KOG0975|consen   89 VLHYGQGLFEGLKAYRTEDGKIRLFRPDQNMDRMLRSAERACLPSPDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLL  168 (379)
T ss_pred             ceecchhhccccccccCCCCeEEEecchhhHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeee
Confidence            35899999999999999999999999999999999999999999889999999999999999999998767899999999


Q ss_pred             eccccccccccccCCC------CccccCCchhhHHHHHHHHHHhC-CC----------CCCHHHH------HHHHHHHHH
Q psy16306        222 IGTDLFEGMKAYRGVD------GHIRMFRPEMNMDRMNRSALRAG-LP----------QFDPEEM------IQCLNRLIQ  278 (302)
Q Consensus       222 ~g~~~feG~r~~~~~~------~~~~if~~~~h~~RL~~Sa~~r~-~~----------~~~~~~l------~~~~~e~l~  278 (302)
                      .|++.-.|+..-....      +-+.+|...-.+.+|......++ .|          ++.+.-+      .++++++|.
T Consensus       169 ~Gt~~~Lgv~~~~e~~l~vi~spvg~yf~~g~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLw  248 (379)
T KOG0975|consen  169 IGTDPVLGVSPAPEATLFVIVSPVGPYFKSGFKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLW  248 (379)
T ss_pred             ccCCcccccccCCcceEEEEEcccchhccccccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEE
Confidence            9998777764332110      00122322122344444444333 22          2222111      244555555


Q ss_pred             Hc--CCccCCCCcccEEE
Q psy16306        279 ID--QEWVPHTTAASLYI  294 (302)
Q Consensus       279 ~n--~~~v~e~~~~n~yi  294 (302)
                      +.  +++++|.+..|+|+
T Consensus       249 L~~d~~~ItEv~tmNiF~  266 (379)
T KOG0975|consen  249 LDGDGGYITEVGTMNIFM  266 (379)
T ss_pred             EecCCCceeeccceeEEE
Confidence            55  25899999999987

>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I

Probab=99.38  E-value=7.1e-14  Score=129.10  Aligned_cols=164  Identities=20%  Similarity=0.303  Sum_probs=116.6

Q ss_pred             hhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHH
Q psy16306        124 QIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRLIQ  201 (302)
Q Consensus       124 ~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~ii~  201 (302)
                      +.||.++|.. ...++..|+++||+++||+++.+++.+ ...+|++++|++||.+||+.++++ +.+.+++.+.+..++.
T Consensus         1 ~~ng~~v~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~-~~~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~   79 (298)
T TIGR01122         1 WMDGEFVDWEDAKVHVLTHALHYGTGVFEGIRAYDTDK-GPAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLR   79 (298)
T ss_pred             CcCCEEEEhhhcccChhhhhhhccceEEEEEEEEcCCC-cceeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            4689999975 589999999999999999999998866 447999999999999999999999 7889999999999988


Q ss_pred             hcccccccCCCceeeecceeeccccccccccccCCCCccc----cC----Cc--hhhHHHHHHHHHHhCCC-CCCH----
Q psy16306        202 IDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIR----MF----RP--EMNMDRMNRSALRAGLP-QFDP----  266 (302)
Q Consensus       202 ~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~----if----~~--~~h~~RL~~Sa~~r~~~-~~~~----  266 (302)
                      .|+.       ...+++.+++++....|..+.........    ++    ..  ...+.|+..+.+.|..+ ..+.    
T Consensus        80 ~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~r~~~~~~~~~~K~  152 (298)
T TIGR01122        80 KNNL-------RSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVSSWRRNAPNTIPTAAKA  152 (298)
T ss_pred             hcCC-------CCEEEEEEEEEccCCCCcCCCCCCCceEEEEEeccccccCcccccCCeEEEEEEEEcCCCCCcCccchh
Confidence            8764       25789998876654445443211111100    01    00  11245565565555443 2111    


Q ss_pred             --HHH----------HHHHHHHHHHc-CCccCCCCcccEEEE
Q psy16306        267 --EEM----------IQCLNRLIQID-QEWVPHTTAASLYIR  295 (302)
Q Consensus       267 --~~l----------~~~~~e~l~~n-~~~v~e~~~~n~yir  295 (302)
                        ..+          .++++++|..| +|.|+|++.+|+|+.
T Consensus       153 ~~~yl~~v~a~~~a~~~g~de~l~ld~~g~v~E~s~sNlf~v  194 (298)
T TIGR01122       153 GGNYLNSLLAKSEARRHGYDEAILLDVEGYVAEGSGENIFIV  194 (298)
T ss_pred             hhhhHHHHHHHHHHHHcCCCEEEEECCCCCEEECCceEEEEE
Confidence              111          23456667777 799999999999986

Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.

>PLN02845 Branched-chain-amino-acid aminotransferase-like protein

Probab=99.32  E-value=2.3e-13  Score=127.68  Aligned_cols=117  Identities=14%  Similarity=0.137  Sum_probs=90.7

Q ss_pred             cCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCC-CCceeeecccccccccccccccccCCCCceEEec
Q psy16306         89 FRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFR  167 (302)
Q Consensus        89 Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~  167 (302)
                      ..-.+-++||+.--     -....+.|.+  ...++.||.|+|.+ ...++.+|+++||+++||+++.+++     .+|+
T Consensus        16 ~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~~G-----~~~~   83 (336)
T PLN02845         16 LSAAEMIQRLQSKW-----SDAKKQNFGA--MYSSVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIRDG-----HLYE   83 (336)
T ss_pred             ccHHHHHHHHHhhh-----ccccccceee--eeeEEECCEEccHHHCcccccccceeecceEEEEEEEECC-----EEcC
Confidence            34445567776521     1233444443  23568899999985 6899999999999999999999988     7999


Q ss_pred             ccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHhcccccccCCCceeeecceeecc
Q psy16306        168 PEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGT  224 (302)
Q Consensus       168 ~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~ii~~ng~~vp~~~~~s~ylr~~l~g~  224 (302)
                      +++|++||.+||+.++++ +++.+++.+.+..++..|+.       ...+++..+.++
T Consensus        84 le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i~~~~~-------~~~~irl~vtrG  134 (336)
T PLN02845         84 LDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAASGC-------RNGSLRYWLSAG  134 (336)
T ss_pred             HHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCC-------CcEEEEEEEEeC
Confidence            999999999999999999 77899999999999888764       145666666543

>PRK06606 branched-chain amino acid aminotransferase; Validated

Probab=99.32  E-value=1.7e-13  Score=127.15  Aligned_cols=165  Identities=19%  Similarity=0.304  Sum_probs=117.1

Q ss_pred             HHhhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306        122 LIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRL  199 (302)
Q Consensus       122 lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~i  199 (302)
                      +++.||.++|.. ...++..|+++||+++||+++.+++.++. .+|++++|++||.+||+.++++ +++.+++.+.+..+
T Consensus         8 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEtir~~~g~~~~-~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~   86 (306)
T PRK06606          8 YIWFNGELVPWEDAKVHVLTHALHYGTGVFEGIRAYDTPKGP-AIFRLREHTKRLFNSAKILRMEIPYSVDELMEAQREV   86 (306)
T ss_pred             cEEECCEEEEhHHcccChhhhhhhhcceeEEEEEEecCCCCC-eeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            578899999975 58999999999999999999999885443 3899999999999999999999 77899999999999


Q ss_pred             HHhcccccccCCCceeeecceeeccccccccccccCCCCccc----c----CCch--hhHHHHHHHHHHhCCC-CCC---
Q psy16306        200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIR----M----FRPE--MNMDRMNRSALRAGLP-QFD---  265 (302)
Q Consensus       200 i~~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~----i----f~~~--~h~~RL~~Sa~~r~~~-~~~---  265 (302)
                      +..|+.       ...++|..++++....|..+.... ....    +    +...  ..+.|+..+.+.+..+ ...   
T Consensus        87 i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~-~~~~i~~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~  158 (306)
T PRK06606         87 VRKNNL-------KSAYIRPLVFVGDEGLGVRPHGLP-TDVAIAAWPWGAYLGEEALEKGIRVKVSSWTRHAPNSIPTRA  158 (306)
T ss_pred             HHhcCC-------CCEEEEEEEEecCCccCcCCCCCC-ceEEEEEeccccccCcccccCCeEEEEeeEecCCCCCcCcch
Confidence            988764       267889888776544454422110 0000    0    0011  1244555555555433 210   


Q ss_pred             ---HHHH----------HHHHHHHHHHc-CCccCCCCcccEEEE
Q psy16306        266 ---PEEM----------IQCLNRLIQID-QEWVPHTTAASLYIR  295 (302)
Q Consensus       266 ---~~~l----------~~~~~e~l~~n-~~~v~e~~~~n~yir  295 (302)
                         ...+          .++++|+|..| +|.|+|++.+|+|+.
T Consensus       159 K~~~nyl~~vla~~ea~~~G~de~l~l~~~g~v~E~~~sNlf~v  202 (306)
T PRK06606        159 KASGNYLNSILAKTEARRNGYDEALLLDVEGYVSEGSGENIFIV  202 (306)
T ss_pred             hhhhccHHHHHHHHHHHHcCCCEEEEECCCCCEEEcCceEEEEE
Confidence               0111          24456777787 799999999999986

>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.28  E-value=1.2e-12  Score=120.09  Aligned_cols=162  Identities=22%  Similarity=0.319  Sum_probs=113.5

Q ss_pred             HHhhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306        122 LIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRL  199 (302)
Q Consensus       122 lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~i  199 (302)
                      .++.||.++|.. ...++..|.++||++.|+|++.+++     .+|++++|++||.+||+.+.+| +++.+++......+
T Consensus         3 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~vFE~~r~~~g-----~~~~l~~H~~RL~~Sa~~l~~~~~~~~~~~~~~~~~~   77 (284)
T COG0115           3 KIWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNG-----KLFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLL   77 (284)
T ss_pred             eEeECCEEccCcccccCcccceeccccceeEEEEEeCC-----cccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            457899999976 5899999999999999999999986     7999999999999999999999 78888888887777


Q ss_pred             HHhcccccccCCCceeeecceeeccccccccccccCCCCc--------cccCCch--hhHHHHHHHHHHhCCC-CCCH--
Q psy16306        200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGH--------IRMFRPE--MNMDRMNRSALRAGLP-QFDP--  266 (302)
Q Consensus       200 i~~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~--------~~if~~~--~h~~RL~~Sa~~r~~~-~~~~--  266 (302)
                      +..++-      ...+|+++++++.+...|.+. . ..+.        ..++...  ..+.++..+...|..+ +...  
T Consensus        78 ~~~~~~------~~~~y~r~~~~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  149 (284)
T COG0115          78 LAKNNL------VPGLYIRPLVRGGGGGLGVRD-A-TEPTLIVAASPVGAYLKGGRLEKGVVLVISSPVRRAPPGPGAAK  149 (284)
T ss_pred             HHhhCC------CCceEEEEEEEeecCCCCcCC-C-CccEEEEEEEecccccCcccccCCeEEEEeehhhccCCCcchhh
Confidence            766543      124899999999887777766 1 1110        1111111  1232233333233332 2111  


Q ss_pred             -------HHH------HHHHHHHHHHc-CCccCCCCcccEEEEE
Q psy16306        267 -------EEM------IQCLNRLIQID-QEWVPHTTAASLYIRP  296 (302)
Q Consensus       267 -------~~l------~~~~~e~l~~n-~~~v~e~~~~n~yir~  296 (302)
                             ..+      .++.+++|..| +|+|+|++.+|+|+.-
T Consensus       150 k~~~y~~~~~a~~~A~~~G~~eal~~~~~G~V~Eg~~sNvf~v~  193 (284)
T COG0115         150 KTGNYLSSVLAKREAKAAGADEALLLDEDGYVTEGAGSNVFFVK  193 (284)
T ss_pred             hhcccHHHHHHHHHHHHCCCCEEEEecCCCeEEEcCcceEEEEE
Confidence                   111      23345666677 7999999999999854

>PRK07650 4-amino-4-deoxychorismate lyase; Provisional

Probab=99.26  E-value=1.4e-12  Score=119.71  Aligned_cols=93  Identities=20%  Similarity=0.329  Sum_probs=80.0

Q ss_pred             HHhhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306        122 LIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRL  199 (302)
Q Consensus       122 lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~i  199 (302)
                      +++.||.++|.. +..++..|+++||+++||+++.+++     .+|++++|++||.+||+.++++ +.+.+.+.+.+..+
T Consensus         1 ~~~~nG~~~~~~~~~v~~~drg~~~GdgvFEt~r~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~l~~~   75 (283)
T PRK07650          1 LIYVNGQYVEEEEARISPFDHGYLYGLGVFETFRIYNG-----HPFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNL   75 (283)
T ss_pred             CEEECCEEeEHHHCeecccccccccccEEEEEEEEECC-----EEEcHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            367899999975 6899999999999999999999988     7899999999999999999999 77899999999988


Q ss_pred             HHhcccccccCCCceeeecceeecccc
Q psy16306        200 IQIDQEWVPHTTAASLYIRPTLIGTDL  226 (302)
Q Consensus       200 i~~ng~~vp~~~~~s~ylr~~l~g~~~  226 (302)
                      +..++.       ...++|..++++..
T Consensus        76 ~~~~~~-------~~~~iRl~v~rg~~   95 (283)
T PRK07650         76 LEKNGL-------ENAYVRFNVSAGIG   95 (283)
T ss_pred             HHhcCC-------CcEEEEEEEEeCCC
Confidence            877653       25678888766533

>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate

Probab=99.24  E-value=1.3e-12  Score=119.60  Aligned_cols=158  Identities=30%  Similarity=0.493  Sum_probs=110.3

Q ss_pred             ceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcccccccCCCcee
Q psy16306        136 ASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASL  215 (302)
Q Consensus       136 ~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~ng~~vp~~~~~s~  215 (302)
                      .++.+|+++||+++||+++.++..|+...+|++++|++||.+||+.+++++++.+++.+.+..++..|+.|.|.......
T Consensus         2 i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~~i~~~~~~~~~~~~~~~   81 (279)
T cd01557           2 LHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGASL   81 (279)
T ss_pred             cCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCE
Confidence            56789999999999999999984444447999999999999999999999778999999999999999888665433467


Q ss_pred             eecceeeccccccccccccCCCCcccc----CCc----hhhHHHHHHHHHHhCCC-CCC-----HHHH----------HH
Q psy16306        216 YIRPTLIGTDLFEGMKAYRGVDGHIRM----FRP----EMNMDRMNRSALRAGLP-QFD-----PEEM----------IQ  271 (302)
Q Consensus       216 ylr~~l~g~~~feG~r~~~~~~~~~~i----f~~----~~h~~RL~~Sa~~r~~~-~~~-----~~~l----------~~  271 (302)
                      +++..++++....|..+..  .....+    +..    ...+.++..+.+.+..+ ...     ...+          .+
T Consensus        82 ~ir~~v~rg~~~~g~~~~~--~~~~~i~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~  159 (279)
T cd01557          82 YIRPFIFGTDPQLGVSPAL--EYLFAVFASPVGAYFKGGEKGVSALVSSFRRAAPGGPGAAKAGGNYAASLLAQKEAAEK  159 (279)
T ss_pred             EEEEEEEeccccCCcCCCC--ccEEEEEEEEccccccCCCCCeEEEEeeEEcCCCCCCcccchhhccHHHHHHHHHHHHC
Confidence            9999998776555554321  110011    000    01234444454445433 110     0111          23


Q ss_pred             HHHHHHHHc-C-CccCCCCcccEEEE
Q psy16306        272 CLNRLIQID-Q-EWVPHTTAASLYIR  295 (302)
Q Consensus       272 ~~~e~l~~n-~-~~v~e~~~~n~yir  295 (302)
                      +++|+|..| + |+|+|++.+|+|+.
T Consensus       160 g~de~l~ld~~~g~v~E~~~sNlf~v  185 (279)
T cd01557         160 GYDQALWLDGAHGYVAEVGTMNIFFV  185 (279)
T ss_pred             CCCEEEEEcCCCCEEEEeCcEEEEEE
Confidence            456778888 6 99999999999986

The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.

>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II

Probab=99.23  E-value=1.7e-11  Score=114.14  Aligned_cols=101  Identities=37%  Similarity=0.635  Sum_probs=83.6

Q ss_pred             HhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Q psy16306        201 QIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQI  279 (302)
Q Consensus       201 ~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~~~~~~~l~~~~~e~l~~  279 (302)
                      |.||+|+|.++ ..++.+|+++||+|+|||+|+|+..+|...+|++++|+.||..|+..++++.++.+++.+.+.+++++
T Consensus         1 ~~nG~~~~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~~~~~~l~~~l~~~~~~   80 (313)
T TIGR01123         1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKA   80 (313)
T ss_pred             CCCCEEEECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            57999999864 56789999999999999999996444544578999999999999999999965889999999999999


Q ss_pred             cCCccCC-CCcccEEEEEEeeec
Q psy16306        280 DQEWVPH-TTAASLYIRPTLIGT  301 (302)
Q Consensus       280 n~~~v~e-~~~~n~yir~~~~~~  301 (302)
                      |..+++. +...++||||++++.
T Consensus        81 ~~~~~~~~~~~~~~~ir~~v~~~  103 (313)
T TIGR01123        81 NKDWVPPYGSGASLYLRPFVIGT  103 (313)
T ss_pred             ccccCCCCCCCCcEEEEeEEEec
Confidence            8654442 234578999998764

Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.

>PRK13356 aminotransferase; Provisional

Probab=99.22  E-value=8e-12  Score=114.81  Aligned_cols=94  Identities=23%  Similarity=0.329  Sum_probs=81.7

Q ss_pred             HHHHHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHH
Q psy16306        197 NRLIQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLN  274 (302)
Q Consensus       197 ~~ii~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~  274 (302)
                      +.++|.||+|++.+. ..++.+|+++||+|+||++|+|+     +++|.+++|++||..|++.++++ +++.+++.+.+.
T Consensus         6 ~~~~~~nG~~~~~~~~~i~~~drg~~yGdgvFEtir~~~-----g~~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~   80 (286)
T PRK13356          6 NTWTFFDGEWHEGNVPIMGPADHAAWLGSTVFDGARAFE-----GVTPDLDLHCARVNRSAEALGLKPTVSAEEIEALAR   80 (286)
T ss_pred             CceEEECCEEcchhhcccccccchhhhcceeEEEEEEec-----CCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence            347899999998764 45789999999999999999995     48899999999999999999998 888999999999


Q ss_pred             HHHHHcCCccCCCCcccEEEEEEeeec
Q psy16306        275 RLIQIDQEWVPHTTAASLYIRPTLIGT  301 (302)
Q Consensus       275 e~l~~n~~~v~e~~~~n~yir~~~~~~  301 (302)
                      +++.+|+.      ..+.|||++++..
T Consensus        81 ~~i~~~~~------~~~~~ir~~v~rg  101 (286)
T PRK13356         81 EGLKRFDP------DTALYIRPMYWAE  101 (286)
T ss_pred             HHHHHcCC------CCcEEEEEEEEec
Confidence            99999862      3578999998853

>PRK12479 branched-chain amino acid aminotransferase; Provisional

Probab=99.16  E-value=1.7e-11  Score=113.40  Aligned_cols=91  Identities=25%  Similarity=0.382  Sum_probs=80.8

Q ss_pred             HHHHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHHH
Q psy16306        198 RLIQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNR  275 (302)
Q Consensus       198 ~ii~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~e  275 (302)
                      .++|.||+++|.+. ..++.+|+++||+++||++++++     +++|.+++|++||..|+..++++ +++.+++.+.+.+
T Consensus         4 ~~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~~-----g~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~   78 (299)
T PRK12479          4 QYIYMNGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSYG-----GNVFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQ   78 (299)
T ss_pred             cEEEECCEEeEHHHCccccccchhheeeeEEEEEEEEC-----CEecCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence            35789999999854 56889999999999999999995     48999999999999999999998 8888999999999


Q ss_pred             HHHHcCCccCCCCcccEEEEEEeee
Q psy16306        276 LIQIDQEWVPHTTAASLYIRPTLIG  300 (302)
Q Consensus       276 ~l~~n~~~v~e~~~~n~yir~~~~~  300 (302)
                      +++.|+       ..+.|||++++.
T Consensus        79 ~i~~~~-------~~~~~ir~~v~r   96 (299)
T PRK12479         79 TLQKNE-------YADAYIRLIVSR   96 (299)
T ss_pred             HHHHcC-------CCCeEEEEEEEe
Confidence            999876       457899999875

>TIGR01121 D_amino_aminoT D-amino acid aminotransferase

Probab=99.11  E-value=6e-11  Score=108.49  Aligned_cols=88  Identities=17%  Similarity=0.284  Sum_probs=75.7

Q ss_pred             HHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q psy16306        200 IQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLI  277 (302)
Q Consensus       200 i~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~e~l  277 (302)
                      +|.||+++|.++ ..++.+++++||+++|||+|+|+     +.+|.+++|+.||..|++.++++ +++.+++.+.+.+++
T Consensus         2 ~~~nG~~~~~~~~~i~~~drgl~yGdgvFEtir~~~-----g~~~~l~~H~~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~   76 (276)
T TIGR01121         2 VLWNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVYN-----GKLFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELV   76 (276)
T ss_pred             EEECCEEeEHHHCeecccccccccccEEEEEEEEEC-----CEEeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            478999999864 46779999999999999999995     48999999999999999999999 888999999999999


Q ss_pred             HHcCCccCCCCcccEEEEEEee
Q psy16306        278 QIDQEWVPHTTAASLYIRPTLI  299 (302)
Q Consensus       278 ~~n~~~v~e~~~~n~yir~~~~  299 (302)
                      ++|+       ..+.+||..++
T Consensus        77 ~~~~-------~~~~~irl~~~   91 (276)
T TIGR01121        77 EKNN-------LNTGHVYFQVT   91 (276)
T ss_pred             HhcC-------CCceEEEEEEE
Confidence            9986       34556666554

Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.

>PRK06680 D-amino acid aminotransferase; Reviewed

Probab=99.11  E-value=6.1e-11  Score=109.01  Aligned_cols=89  Identities=12%  Similarity=0.197  Sum_probs=77.3

Q ss_pred             HHHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q psy16306        199 LIQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  276 (302)
Q Consensus       199 ii~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~e~  276 (302)
                      ++|.||+|+|.++ ..++.+|+++||+|+|||+|+++     +++|.+++|.+||..|++.++++ +++.+++.+.+.++
T Consensus         4 ~~~~nG~~~~~~~~~i~~~drg~~yGdGvFEt~r~~~-----g~~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~   78 (286)
T PRK06680          4 IAYVNGRYVNHREARVHIEDRGFQFADGIYEVCAVRD-----GKLVDLDRHLARLFRSLGEIRIAPPMTRAELVEVLREL   78 (286)
T ss_pred             EEEECCEEEEHHHCcccccccccceeeEEEEEEEEEC-----CEEechHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            5789999999753 56889999999999999999995     48999999999999999999999 88899999999999


Q ss_pred             HHHcCCccCCCCcccEEEEEEee
Q psy16306        277 IQIDQEWVPHTTAASLYIRPTLI  299 (302)
Q Consensus       277 l~~n~~~v~e~~~~n~yir~~~~  299 (302)
                      +++|+       ..+.+||..++
T Consensus        79 ~~~~~-------~~~~~lr~~vt   94 (286)
T PRK06680         79 IRRNR-------VREGLVYLQVT   94 (286)
T ss_pred             HHHcC-------CCceEEEEEEE
Confidence            99985       34556666555

>PRK09266 hypothetical protein; Provisional

Probab=99.10  E-value=6.6e-12  Score=114.19  Aligned_cols=155  Identities=14%  Similarity=0.115  Sum_probs=99.5

Q ss_pred             HHhhccccccCCCCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q psy16306        122 LIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQ  201 (302)
Q Consensus       122 lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~  201 (302)
                      +++.||.++|...-.    ++++||+++||+++.+++     .++.+++|++||.+||+.+.+++++.+++.+.+..++ 
T Consensus         4 ~~~~nG~~~~~~~a~----~~~~~GdgvFETir~~~g-----~~~~l~~Hl~RL~~sa~~l~~~~~~~~~l~~~l~~~~-   73 (266)
T PRK09266          4 LIELNGRPATAEDLA----ALALANYGHFTSMQVRDG-----RVRGLDLHLQRLRRASRELFGAALDDDRVRAQLRAAL-   73 (266)
T ss_pred             EEEECCEECCHHHhh----hHhhccceEEEEEEEECC-----EEcCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-
Confidence            478999999985311    599999999999999988     7999999999999999988666678899999998887 


Q ss_pred             hcccccccCCCceeeecceeeccccccccccccCCCCccc----cCCch-hhHHHHHHHHHHhCCC-----CCCHHHH--
Q psy16306        202 IDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIR----MFRPE-MNMDRMNRSALRAGLP-----QFDPEEM--  269 (302)
Q Consensus       202 ~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~----if~~~-~h~~RL~~Sa~~r~~~-----~~~~~~l--  269 (302)
                      .++.       ...++|..+++.....|..... ......    ++... ..+.++..+...+..+     ++. ..+  
T Consensus        74 ~~~~-------~~~~ir~~v~r~~g~~~~~~~~-~~~~~~i~~~~~~~~~~~~v~l~~~~~~r~~~~~K~~~~l-~~vla  144 (266)
T PRK09266         74 AAGP-------ADASVRVTVFAPDFDFRNPLAD-VAPDVLVATSPPADGPAGPLRLQSVPYERELPHIKHVGTF-GQLHL  144 (266)
T ss_pred             hcCC-------CcEEEEEEEEecCcccCCCCCC-CCceEEEEEecCCcCCCCCeEEEEEEecccCCCCCCCCcH-HHHHH
Confidence            3322       2568888776532222221100 000000    00000 1122233333322222     111 111  


Q ss_pred             -----HHHHHHHHHHc-CCccCCCCcccEEEE
Q psy16306        270 -----IQCLNRLIQID-QEWVPHTTAASLYIR  295 (302)
Q Consensus       270 -----~~~~~e~l~~n-~~~v~e~~~~n~yir  295 (302)
                           .++++|+|..| +|.|+|++.+|+|++
T Consensus       145 ~~~a~~~g~de~l~ln~~g~v~E~~~sNlf~v  176 (266)
T PRK09266        145 RRLAQRAGFDDALFVDPDGRVSEGATWNLGFW  176 (266)
T ss_pred             HHHHHHcCCCeEEEEcCCCcEEEcCceEEEEE
Confidence                 24566778888 899999999999986

>PRK08320 branched-chain amino acid aminotransferase; Reviewed

Probab=99.08  E-value=9.9e-11  Score=107.64  Aligned_cols=90  Identities=30%  Similarity=0.475  Sum_probs=80.0

Q ss_pred             HHHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q psy16306        199 LIQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  276 (302)
Q Consensus       199 ii~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~e~  276 (302)
                      ++|.||+|++..+ ..+..+|+++||+++||++++++     +.+|.+++|+.||..|+..++++ +++.+++.+.+.++
T Consensus         4 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~~v~~-----g~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~   78 (288)
T PRK08320          4 LIYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAYN-----GRVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLET   78 (288)
T ss_pred             EEEECCEEEEHHHCcccccchhhhhcceEEEEEEEEC-----CEeecHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Confidence            5789999998753 56789999999999999999985     48999999999999999999998 88889999999999


Q ss_pred             HHHcCCccCCCCcccEEEEEEeee
Q psy16306        277 IQIDQEWVPHTTAASLYIRPTLIG  300 (302)
Q Consensus       277 l~~n~~~v~e~~~~n~yir~~~~~  300 (302)
                      +++|+       ..+.+||+++++
T Consensus        79 i~~~~-------~~~~~iri~v~r   95 (288)
T PRK08320         79 LRKNN-------LRDAYIRLVVSR   95 (288)
T ss_pred             HHhcC-------CCCEEEEEEEEE
Confidence            99986       567899999885

>PRK12400 D-amino acid aminotransferase; Reviewed

Probab=99.08  E-value=9.9e-11  Score=107.80  Aligned_cols=91  Identities=19%  Similarity=0.224  Sum_probs=78.7

Q ss_pred             HHHhcccccccC--C-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHH
Q psy16306        199 LIQIDQEWVPHT--T-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLN  274 (302)
Q Consensus       199 ii~~ng~~vp~~--~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~  274 (302)
                      ++|.||+|+|.+  . ..++.+|+++||+++|||+|+++     +++|.+++|..||..|++.++++ +++.+++.+.+.
T Consensus         6 ~~~~ng~~v~~~~~~~~i~~~drgl~yGdgvFEtir~~~-----G~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~l~~~l~   80 (290)
T PRK12400          6 FVLWNDAVIDTTKQKTYIELEERGLQFGDGVYEVIRLYK-----GNFHLLDPHITRLYRSMEEIELTLPFSKAELITLLY   80 (290)
T ss_pred             EEEECCEEechHHcCceeccccchhhhcceEEEEEEEEC-----CEecccHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence            689999999987  3 46789999999999999999995     48999999999999999999999 888899999999


Q ss_pred             HHHHHcCCccCCCCcccEEEEEEeee
Q psy16306        275 RLIQIDQEWVPHTTAASLYIRPTLIG  300 (302)
Q Consensus       275 e~l~~n~~~v~e~~~~n~yir~~~~~  300 (302)
                      +++++|+.      ..+.+||..++.
T Consensus        81 ~~~~~~~~------~~~~~iri~v~r  100 (290)
T PRK12400         81 KLIENNNF------HEDGTIYLQVSR  100 (290)
T ss_pred             HHHHhcCC------CCCEEEEEEEEe
Confidence            99999851      246677777763

>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate

Probab=99.05  E-value=5.1e-11  Score=107.27  Aligned_cols=144  Identities=22%  Similarity=0.261  Sum_probs=94.6

Q ss_pred             ecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcccccccCCCceeeecc
Q psy16306        140 IRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRP  219 (302)
Q Consensus       140 irp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~ng~~vp~~~~~s~ylr~  219 (302)
                      +|+++||++.||+++.+++     .+|++++|++||.+||+.++|++++.+++++.+..++..|+.       ...++|.
T Consensus         1 Drg~~~GdgvFEt~~~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~   68 (249)
T cd01559           1 DRGFAYGDGVFETMRALDG-----RLFLLDAHLARLERSARRLGIPEPDLPRLRAALESLLAANDI-------DEGRIRL   68 (249)
T ss_pred             CCcccccceeEEEEEEECC-----EEccHHHHHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHhCCC-------CceEEEE
Confidence            4789999999999999988     799999999999999999999977899999999999887764       2457777


Q ss_pred             eeeccccccccccccCCCCcccc----CCc--hhhHHHHHHHHHHhCCC-CC----CHHHH----------HHHHHHHHH
Q psy16306        220 TLIGTDLFEGMKAYRGVDGHIRM----FRP--EMNMDRMNRSALRAGLP-QF----DPEEM----------IQCLNRLIQ  278 (302)
Q Consensus       220 ~l~g~~~feG~r~~~~~~~~~~i----f~~--~~h~~RL~~Sa~~r~~~-~~----~~~~l----------~~~~~e~l~  278 (302)
                      .+..+....|..+...+.....+    +..  ...+.++..+...+..+ ..    +...+          .++++++|.
T Consensus        69 ~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~~Kt~ny~~~~~a~~~a~~~g~de~l~  148 (249)
T cd01559          69 ILSRGPGGRGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCPVRLGEQPLLAGLKHLNYLENVLAKREARDRGADEALF  148 (249)
T ss_pred             EEecCCCCCCCCCCCCCCCEEEEEeccCCHHHHhCCcEEEEcccccCCCCCCCCcchhhhHHHHHHHHHHHhcCCCEEEE
Confidence            77654332333222211111100    110  01233444444443211 10    00111          234566777


Q ss_pred             Hc-CCccCCCCcccEEEE
Q psy16306        279 ID-QEWVPHTTAASLYIR  295 (302)
Q Consensus       279 ~n-~~~v~e~~~~n~yir  295 (302)
                      .| +|+|+|++.+|+|+.
T Consensus       149 l~~~g~v~E~~~~Nif~~  166 (249)
T cd01559         149 LDTDGRVIEGTASNLFFV  166 (249)
T ss_pred             EcCCCCEEEecceEEEEE
Confidence            77 799999999999886

Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.

>TIGR03461 pabC_Proteo aminodeoxychorismate lyase

Probab=99.04  E-value=5.6e-11  Score=107.71  Aligned_cols=72  Identities=19%  Similarity=0.250  Sum_probs=62.0

Q ss_pred             hhccccccCCCCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhc
Q psy16306        124 QIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQID  203 (302)
Q Consensus       124 ~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~n  203 (302)
                      |.||..   .+..++..|.++||+++||+++.+++     .+|++++|++||.+||+.++++.++.+++.+.+..++..+
T Consensus         1 ~~nG~~---~~~i~~~d~g~~~G~gvFEt~r~~~G-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~~~~~~~~~   72 (261)
T TIGR03461         1 WVNGVL---QTQISVSDRGLQYGDGCFTTAKVRNG-----KIELLDLHLERLQDAAARLGIPLPDWDALREEMAQLAAGY   72 (261)
T ss_pred             CcCCcc---cCccCcccccccccceeEEEEEEECC-----EeccHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhC
Confidence            357763   34688999999999999999999988     7999999999999999999999447889999888887654

Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).

>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV)

Probab=99.01  E-value=5.6e-11  Score=107.15  Aligned_cols=143  Identities=28%  Similarity=0.389  Sum_probs=95.8

Q ss_pred             ecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHhcccccccCCCceeeec
Q psy16306        140 IRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIR  218 (302)
Q Consensus       140 irp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~ii~~ng~~vp~~~~~s~ylr  218 (302)
                      +|+++||+++||+++..++     .+|++++|++||.+||+.++++ +++.+++.+.+..++..++.       ...++|
T Consensus         1 drg~~~GdgvFEt~r~~~g-----~~~~l~~Hl~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~ir   68 (256)
T cd00449           1 DRGLHYGDGVFEGLRAGKG-----RLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANNG-------ASLYIR   68 (256)
T ss_pred             CceeeccceEEEEEEEcCc-----EEEChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CCEEEE
Confidence            4789999999999999888     7999999999999999999999 78999999999988877553       256788


Q ss_pred             ceeeccccccccccccCCCCcccc----CC----chhhHHHHHHHHHHhC--------CC--CCCHHHH-------HHHH
Q psy16306        219 PTLIGTDLFEGMKAYRGVDGHIRM----FR----PEMNMDRMNRSALRAG--------LP--QFDPEEM-------IQCL  273 (302)
Q Consensus       219 ~~l~g~~~feG~r~~~~~~~~~~i----f~----~~~h~~RL~~Sa~~r~--------~~--~~~~~~l-------~~~~  273 (302)
                      ..++++....|..+.........+    +.    ....+.++..+...+.        ++  ++ ...+       .+++
T Consensus        69 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~Kt~~~-~~~~~a~~~a~~~g~  147 (256)
T cd00449          69 PLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPDRRRAAPGGTGDAKTGGN-LNSVLAKQEAAEAGA  147 (256)
T ss_pred             EEEEecccccCCCCCCCCCcEEEEEEeeccccccccCCCeEEEEeeeEEeCCCCCCccchhhCC-HHHHHHHHHHHHcCC
Confidence            888665544444322111111100    10    0112333444444332        11  11 1111       2345


Q ss_pred             HHHHHHc-CCccCCCCcccEEEE
Q psy16306        274 NRLIQID-QEWVPHTTAASLYIR  295 (302)
Q Consensus       274 ~e~l~~n-~~~v~e~~~~n~yir  295 (302)
                      +|+|..| +|+|+|++.+|+|++
T Consensus       148 de~llld~~g~v~E~s~sNlf~~  170 (256)
T cd00449         148 DEALLLDDNGYVTEGSASNVFIV  170 (256)
T ss_pred             CEEEEECCCCcEEEcCceEEEEE
Confidence            6778887 599999999999987

This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.

>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed

Probab=99.00  E-value=8.4e-11  Score=106.97  Aligned_cols=156  Identities=15%  Similarity=0.141  Sum_probs=94.9

Q ss_pred             HhhccccccCCCCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQI  202 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~  202 (302)
                      ++.||.+   .+..++.+|.++||+++||+++.+++     .++.+++|++||.+||+.++++..+.+.+.+.+...+  
T Consensus         2 ~~~nG~~---~~~i~~~d~g~~~GdgvFEtir~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~l~~~~--   71 (268)
T PRK06092          2 FWINGQP---QESLSVSDRSTQYGDGCFTTARVRDG-----QVSLLSRHLQRLQDACERLAIPLDDWAQLEQEMKQLA--   71 (268)
T ss_pred             EEECCcC---cCccCccccccccccceeeEEEEECC-----eeccHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--
Confidence            4567875   34688999999999999999999988     7999999999999999999999445567777666655  


Q ss_pred             cccccccCCCceeeecceeeccccccccccccCCCCccc----cCC---ch--hhHHHHHHHHHHhCCCCCC-----HHH
Q psy16306        203 DQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIR----MFR---PE--MNMDRMNRSALRAGLPQFD-----PEE  268 (302)
Q Consensus       203 ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~----if~---~~--~h~~RL~~Sa~~r~~~~~~-----~~~  268 (302)
                      ++.       ...+++..+..+....|..+.....+...    ++.   .+  .++.++..+.+++..+++.     ...
T Consensus        72 ~~~-------~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~~Kt~ny  144 (268)
T PRK06092         72 AEL-------ENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALCPTRLGRNPLLAGIKHLNR  144 (268)
T ss_pred             hhC-------CCeEEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccChhHhhCCEEEEEeccccCCCCCccCcchhhh
Confidence            111       13455655544332223222111111000    000   00  1223333333332211110     011


Q ss_pred             H----------HHHHHHHHHHc-CCccCCCCcccEEEE
Q psy16306        269 M----------IQCLNRLIQID-QEWVPHTTAASLYIR  295 (302)
Q Consensus       269 l----------~~~~~e~l~~n-~~~v~e~~~~n~yir  295 (302)
                      +          .++++++|..| +|+|+|++.+|+|+.
T Consensus       145 ~~~~~a~~~A~~~g~de~l~l~~~g~v~E~s~sNif~v  182 (268)
T PRK06092        145 LEQVLIRAELEQTEADEALVLDSEGWVIECCAANLFWR  182 (268)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCCEEEccceEEEEE
Confidence            1          24456778888 899999999999986

>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids

Probab=98.96  E-value=7.3e-10  Score=100.86  Aligned_cols=76  Identities=24%  Similarity=0.469  Sum_probs=68.3

Q ss_pred             HhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHH
Q psy16306        201 QIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLIQ  278 (302)
Q Consensus       201 ~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~e~l~  278 (302)
                      |.||+++|.+. ..++.+++++||+++|||+|+++     +.+|.+++|+.||..|++.++++ +++.+++.+.+.++++
T Consensus         1 ~~nG~~~~~~~~~i~~~d~g~~~G~gvFEt~r~~~-----g~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~   75 (270)
T cd01558           1 YLNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVYN-----GKPFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVA   75 (270)
T ss_pred             CcCCeEeEHHHCccccccchhcccceEEEEEEEEC-----CEEecHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            57999998753 46789999999999999999995     48999999999999999999999 8888999999999999


Q ss_pred             HcC
Q psy16306        279 IDQ  281 (302)
Q Consensus       279 ~n~  281 (302)
                      .|.
T Consensus        76 ~~~   78 (270)
T cd01558          76 KNE   78 (270)
T ss_pred             HcC
Confidence            974

It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.

>PRK07849 4-amino-4-deoxychorismate lyase; Provisional

Probab=98.91  E-value=1e-09  Score=101.20  Aligned_cols=91  Identities=16%  Similarity=0.148  Sum_probs=77.1

Q ss_pred             HHHhcc-----cccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCCCCCHHHHHHH
Q psy16306        199 LIQIDQ-----EWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQC  272 (302)
Q Consensus       199 ii~~ng-----~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~~~~~~~l~~~  272 (302)
                      ++|.||     +|+|+++ ..+..+|+++||+++||++++++     ++++.+++|++||..|++.++++..+.+++.++
T Consensus         8 ~~~~ng~~~~~~~~~~~~a~i~~~drg~~~GdgvFEt~rv~~-----g~i~~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~   82 (292)
T PRK07849          8 VVTLDPYGGSERVHDPSAPLLHADDLAAVRGDGVFETLLVRD-----GRPCNLEAHLERLARSAALLDLPEPDLDRWRRA   82 (292)
T ss_pred             EEEECCCCccceEechHHCCccchhcchhccceEEEEEEEEC-----CEECCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence            789999     9999865 56789999999999999999995     488999999999999999999993377889999


Q ss_pred             HHHHHHHcC-CccCCCCcccEEEEEEeee
Q psy16306        273 LNRLIQIDQ-EWVPHTTAASLYIRPTLIG  300 (302)
Q Consensus       273 ~~e~l~~n~-~~v~e~~~~n~yir~~~~~  300 (302)
                      +.+++..|. +      ..+.+||++++.
T Consensus        83 i~~~v~~~~~~------~~~~~iRl~v~~  105 (292)
T PRK07849         83 VELAIEEWRAP------EDEAALRLVYSR  105 (292)
T ss_pred             HHHHHHHhcCC------CCCeEEEEEEeC
Confidence            999998872 1      346788877653

>PRK07546 hypothetical protein; Provisional

Probab=98.35  E-value=7.6e-07  Score=78.14  Aligned_cols=65  Identities=28%  Similarity=0.351  Sum_probs=51.6

Q ss_pred             Ceeeeeeeee-ecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeecccccccc
Q psy16306         70 VELFEGMKAY-RGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD  148 (302)
Q Consensus        70 ~~vfEg~r~y-~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~  148 (302)
                      -++||++|++ +|     +++.+++|++||.+||+.+++| ++.+++.+.+.+++..++        ...++|.++..++
T Consensus         4 ~~lfETi~~~~~G-----~~~~l~~Hl~RL~~sa~~l~~~-~~~~~l~~~l~~~~~~~~--------~~~~vrl~~~~~g   69 (209)
T PRK07546          4 FELIETLRWEPGA-----GFPRLDRHLARLERSARALGFP-CDPAAVRAKLAEAVAGAQ--------GPLRLRLTLARDG   69 (209)
T ss_pred             ccEEEEEEEeCCC-----CcccHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhhccC--------CCeEEEEEEcCCC
Confidence            3699999999 65     8999999999999999999998 346789888988887643        3356666655443

>PRK07101 hypothetical protein; Provisional

Probab=97.92  E-value=1.1e-05  Score=69.69  Aligned_cols=47  Identities=26%  Similarity=0.265  Sum_probs=40.9

Q ss_pred             eeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC--CCCHHHHHHHHHHH
Q psy16306         71 ELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP--QFDPEEMIQCLNRL  122 (302)
Q Consensus        71 ~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~--~~~~~~l~~~~~~l  122 (302)
                      ++||+||+++|     +++++++|++||.+||+.+++.  +++.+++.+.+.++
T Consensus         4 ~l~ETir~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~   52 (187)
T PRK07101          4 PLFETIAIEDG-----EIQNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTEL   52 (187)
T ss_pred             cceEEEeeeCC-----eeccHHHHHHHHHHHHHHHcccCCcccHHHHhhchhhh
Confidence            59999999965     7999999999999999999885  58888888877554

>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=97.86  E-value=2.1e-05  Score=69.56  Aligned_cols=59  Identities=24%  Similarity=0.329  Sum_probs=49.8

Q ss_pred             cCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhhccccccCCCCceeeecccccccccccccc
Q psy16306         89 FRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMK  154 (302)
Q Consensus        89 Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~  154 (302)
                      |++++|++||.+||+.+ ++ +++.+++.+++.+++..++.      ..+.|+|+.++++....+..
T Consensus         1 f~l~~Hl~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~------~~~~~ir~~v~~g~~~~~~~   60 (231)
T PF01063_consen    1 FFLDEHLERLRRSARAL-IGLPFSREELREIIQELLEANPD------QGEGYIRITVTRGGGPLGGS   60 (231)
T ss_dssp             ETHHHHHHHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTS------SSSEEEEEEEEETSSSSSSS
T ss_pred             CCHHHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCC------CCCcEEEEEEEcCCCCcCcc
Confidence            79999999999999999 77 89999999999999999872      14559999999876544333

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....

>PRK07546 hypothetical protein; Provisional

Probab=97.68  E-value=3.4e-05  Score=67.68  Aligned_cols=49  Identities=22%  Similarity=0.321  Sum_probs=40.3

Q ss_pred             ccccccccc-cCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Q psy16306        148 DLFEGMKAY-RGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQI  202 (302)
Q Consensus       148 ~~~~g~~~~-~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~  202 (302)
                      +.||+++.. ++     .++.++.|++||.+||+.++++. +.+++.+.+..++..
T Consensus         5 ~lfETi~~~~~G-----~~~~l~~Hl~RL~~sa~~l~~~~-~~~~l~~~l~~~~~~   54 (209)
T PRK07546          5 ELIETLRWEPGA-----GFPRLDRHLARLERSARALGFPC-DPAAVRAKLAEAVAG   54 (209)
T ss_pred             cEEEEEEEeCCC-----CcccHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhhc
Confidence            468899988 77     68899999999999999999983 356788878777654

>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=97.26  E-value=0.00023  Score=62.79  Aligned_cols=56  Identities=21%  Similarity=0.309  Sum_probs=44.7

Q ss_pred             ecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHhcccccccCCCceeeecceeecccccc
Q psy16306        166 FRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFE  228 (302)
Q Consensus       166 f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~ii~~ng~~vp~~~~~s~ylr~~l~g~~~fe  228 (302)
                      |++++|++||.+||+.+ +. +.+.+++++.+...+..++.      ....++|..+.++....
T Consensus         1 f~l~~Hl~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~------~~~~~ir~~v~~g~~~~   57 (231)
T PF01063_consen    1 FFLDEHLERLRRSARAL-IGLPFSREELREIIQELLEANPD------QGEGYIRITVTRGGGPL   57 (231)
T ss_dssp             ETHHHHHHHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTS------SSSEEEEEEEEETSSSS
T ss_pred             CCHHHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCC------CCCcEEEEEEEcCCCCc
Confidence            67899999999999999 66 78999999999999987761      12448888887665433

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....

>PRK07101 hypothetical protein; Provisional

Probab=97.17  E-value=0.00021  Score=61.72  Aligned_cols=47  Identities=23%  Similarity=0.241  Sum_probs=37.7

Q ss_pred             ccccccccccCCCCceEEecccchHHHHHHHHHHcCCC--CCCHHHHHHHHHHH
Q psy16306        148 DLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP--QFDPEEMIQCLNRL  199 (302)
Q Consensus       148 ~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~--~~~~e~l~~gi~~i  199 (302)
                      +.+|+++.+++     .+++++.|++||.+||+.+.+.  +.+.+++.+.+..+
T Consensus         4 ~l~ETir~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~   52 (187)
T PRK07101          4 PLFETIAIEDG-----EIQNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTEL   52 (187)
T ss_pred             cceEEEeeeCC-----eeccHHHHHHHHHHHHHHHcccCCcccHHHHhhchhhh
Confidence            36889998877     6899999999999999998774  46777777666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
2cog_A	386	Crystal Structure Of Oxidized Human Cytosolic Branc		2e-47
2cog_A	386	Crystal Structure Of Oxidized Human Cytosolic Branc		9e-28
2abj_A	366	Crystal Structure Of Human Branched Chain Amino Aci		1e-46
2abj_A	366	Crystal Structure Of Human Branched Chain Amino Aci		3e-27
2hhf_B	365	X-ray Crystal Structure Of Oxidized Human Mitochond		8e-40
2hhf_B	365	X-ray Crystal Structure Of Oxidized Human Mitochond		6e-23
2hdk_A	365	Crystal Structure Of Cys315ala-Cys318ala Mutant Of		8e-40
2hdk_A	365	Crystal Structure Of Cys315ala-Cys318ala Mutant Of		6e-23
2hg8_A	365	Crystal Structure Of Cys315ala Mutant Of Human Mito		9e-40
2hg8_A	365	Crystal Structure Of Cys315ala Mutant Of Human Mito		6e-23
2hgw_A	365	Crystal Structure Of Cys318ala Mutant Of Human Mito		9e-40
2hgw_A	365	Crystal Structure Of Cys318ala Mutant Of Human Mito		6e-23
1ekf_A	365	Crystallographic Structure Of Human Branched Chain		1e-39
1ekf_A	365	Crystallographic Structure Of Human Branched Chain		6e-23
2hhf_A	365	X-ray Crystal Structure Of Oxidized Human Mitochond		8e-39
2hhf_A	365	X-ray Crystal Structure Of Oxidized Human Mitochond		5e-22
3dtf_A	372	Structural Analysis Of Mycobacterial Branched Chain		3e-24
3dtf_A	372	Structural Analysis Of Mycobacterial Branched Chain		1e-14
3dtf_A	372	Structural Analysis Of Mycobacterial Branched Chain		1e-14
3jz6_A	373	Crystal Structure Of Mycobacterium Smegmatis Branch		3e-24
3jz6_A	373	Crystal Structure Of Mycobacterium Smegmatis Branch		1e-14
3jz6_A	373	Crystal Structure Of Mycobacterium Smegmatis Branch		1e-14
3ht5_A	368	Crystal Structure Of Ilve A Branched Chain Amino Ac		2e-22
3ht5_A	368	Crystal Structure Of Ilve A Branched Chain Amino Ac		2e-11
3ht5_A	368	Crystal Structure Of Ilve A Branched Chain Amino Ac		2e-11
4dqn_A	345	Crystal Structure Of The Branched-Chain Aminotransf		2e-17
4dqn_A	345	Crystal Structure Of The Branched-Chain Aminotransf		2e-14
3uyy_A	358	Crystal Structures Of Branched-Chain Aminotransfera		2e-15
3uyy_A	358	Crystal Structures Of Branched-Chain Aminotransfera		2e-11
3uyy_A	358	Crystal Structures Of Branched-Chain Aminotransfera		3e-11

>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic Branched-Chain Aminotransferase Complexed With 4-Methylvalerate Length = 386

Iteration: 1
 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 81/140 (57%), Positives = 113/140 (80%), Gaps = 1/140 (0%)
Query: 15  LQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFE 74
           L+ KP+ + L FGTVFTDHML +E++ + G W+ P + PL+ L+LHP +  LHY+VELFE
Sbjct: 38  LKEKPDPNNLVFGTVFTDHMLTVEWSSEFG-WEKPHIKPLQNLSLHPGSSALHYAVELFE 96
Query: 75  GMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTT 134
           G+KA+RGVD  IR+F+P +NMDRM RSA+RA LP FD EE+++C+ +L+++DQEWVP++T
Sbjct: 97  GLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYST 156
Query: 135 AASLYIRPTLIGTDLFEGMK 154
           +ASLYIRPT IGT+   G+K
Sbjct: 157 SASLYIRPTFIGTEPSLGVK 176

>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic Branched-Chain Aminotransferase Complexed With 4-Methylvalerate Length = 386

Iteration: 1
 Score =  120 bits (301), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 69/78 (88%)
Query: 225 DLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWV 284
           +LFEG+KA+RGVD  IR+F+P +NMDRM RSA+RA LP FD EE+++C+ +L+++DQEWV
Sbjct: 93  ELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWV 152
Query: 285 PHTTAASLYIRPTLIGTD 302
           P++T+ASLYIRPT IGT+
Sbjct: 153 PYSTSASLYIRPTFIGTE 170

>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid Transaminase In A Complex With An Inhibitor, C16h10n2o4f3scl, And Pyridoxal 5' Phosphate. Length = 366

Iteration: 1
 Score =  183 bits (464), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 80/140 (57%), Positives = 112/140 (80%), Gaps = 1/140 (0%)
Query: 15  LQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFE 74
           L+ KP+ + L FGTVFTDHML +E++ + G W+ P + PL+ L+LHP +  LHY+VELFE
Sbjct: 18  LKEKPDPNNLVFGTVFTDHMLTVEWSSEFG-WEKPHIKPLQNLSLHPGSSALHYAVELFE 76
Query: 75  GMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTT 134
           G+KA+RGVD  IR+F+P +NMDRM RSA+RA LP FD EE+++C+ +L+++DQEWVP++T
Sbjct: 77  GLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYST 136
Query: 135 AASLYIRPTLIGTDLFEGMK 154
           +ASLYIRP  IGT+   G+K
Sbjct: 137 SASLYIRPAFIGTEPSLGVK 156

>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid Transaminase In A Complex With An Inhibitor, C16h10n2o4f3scl, And Pyridoxal 5' Phosphate. Length = 366

Iteration: 1
 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 68/80 (85%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
             +LFEG+KA+RGVD  IR+F+P +NMDRM RSA+RA LP FD EE+++C+ +L+++DQE
Sbjct: 71  AVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQE 130
Query: 283 WVPHTTAASLYIRPTLIGTD 302
           WVP++T+ASLYIRP  IGT+
Sbjct: 131 WVPYSTSASLYIRPAFIGTE 150

>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial Branched Chain Aminotransferase (hbcatm) Length = 365

Iteration: 1
 Score =  160 bits (405), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 104/149 (69%), Gaps = 3/149 (2%)
Query: 1   QFQEIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTL 59
            F+   +QL   ++   KP   + L FG  FTDHML +E+N++  GW  PR+ P + LTL
Sbjct: 4   SFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK--GWGQPRIQPFQNLTL 61
Query: 60  HPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 119
           HPA+  LHYS++LFEGMKA++G D  +R+FRP +NMDRM RSA+R  LP FD  E+++C+
Sbjct: 62  HPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLXLPSFDKLELLECI 121
Query: 120 NRLIQIDQEWVPHTTAASLYIRPTLIGTD 148
            RLI++D++WVP     SLY+RP LIG +
Sbjct: 122 RRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150

>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial Branched Chain Aminotransferase (hbcatm) Length = 365

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRA 259
           IQ  Q    H  ++SL+         LFEGMKA++G D  +R+FRP +NMDRM RSA+R 
Sbjct: 53  IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 260 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
            LP FD  E+++C+ RLI++D++WVP     SLY+RP LIG +
Sbjct: 108 XLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150

>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human Mitochondrial Branched Chain Aminotransferase Length = 365

Iteration: 1
 Score =  160 bits (405), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 104/149 (69%), Gaps = 3/149 (2%)
Query: 1   QFQEIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTL 59
            F+   +QL   ++   KP   + L FG  FTDHML +E+N++  GW  PR+ P + LTL
Sbjct: 4   SFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK--GWGQPRIQPFQNLTL 61
Query: 60  HPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 119
           HPA+  LHYS++LFEGMKA++G D  +R+FRP +NMDRM RSA+R  LP FD  E+++C+
Sbjct: 62  HPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECI 121
Query: 120 NRLIQIDQEWVPHTTAASLYIRPTLIGTD 148
            RLI++D++WVP     SLY+RP LIG +
Sbjct: 122 RRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150

>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human Mitochondrial Branched Chain Aminotransferase Length = 365

Iteration: 1
 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRA 259
           IQ  Q    H  ++SL+         LFEGMKA++G D  +R+FRP +NMDRM RSA+R 
Sbjct: 53  IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 260 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
            LP FD  E+++C+ RLI++D++WVP     SLY+RP LIG +
Sbjct: 108 CLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150

>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human Mitochondrial Branched Chain Aminotransferase Complexed With Its Substrate Mimic, N-Methyl Leucine. Length = 365

Iteration: 1
 Score =  160 bits (405), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 104/149 (69%), Gaps = 3/149 (2%)
Query: 1   QFQEIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTL 59
            F+   +QL   ++   KP   + L FG  FTDHML +E+N++  GW  PR+ P + LTL
Sbjct: 4   SFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK--GWGQPRIQPFQNLTL 61
Query: 60  HPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 119
           HPA+  LHYS++LFEGMKA++G D  +R+FRP +NMDRM RSA+R  LP FD  E+++C+
Sbjct: 62  HPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECI 121
Query: 120 NRLIQIDQEWVPHTTAASLYIRPTLIGTD 148
            RLI++D++WVP     SLY+RP LIG +
Sbjct: 122 RRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150

>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human Mitochondrial Branched Chain Aminotransferase Complexed With Its Substrate Mimic, N-Methyl Leucine. Length = 365

Iteration: 1
 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRA 259
           IQ  Q    H  ++SL+         LFEGMKA++G D  +R+FRP +NMDRM RSA+R 
Sbjct: 53  IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 260 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
            LP FD  E+++C+ RLI++D++WVP     SLY+RP LIG +
Sbjct: 108 CLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150

>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human Mitochondrial Branched Chain Aminotransferase Length = 365

Iteration: 1
 Score =  160 bits (405), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 104/149 (69%), Gaps = 3/149 (2%)
Query: 1   QFQEIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTL 59
            F+   +QL   ++   KP   + L FG  FTDHML +E+N++  GW  PR+ P + LTL
Sbjct: 4   SFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK--GWGQPRIQPFQNLTL 61
Query: 60  HPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 119
           HPA+  LHYS++LFEGMKA++G D  +R+FRP +NMDRM RSA+R  LP FD  E+++C+
Sbjct: 62  HPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECI 121
Query: 120 NRLIQIDQEWVPHTTAASLYIRPTLIGTD 148
            RLI++D++WVP     SLY+RP LIG +
Sbjct: 122 RRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150

>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human Mitochondrial Branched Chain Aminotransferase Length = 365

Iteration: 1
 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRA 259
           IQ  Q    H  ++SL+         LFEGMKA++G D  +R+FRP +NMDRM RSA+R 
Sbjct: 53  IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 260 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
            LP FD  E+++C+ RLI++D++WVP     SLY+RP LIG +
Sbjct: 108 CLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150

>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino Acid Aminotransferase (Mitochondrial) Complexed With Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic Form) Length = 365

Iteration: 1
 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 104/149 (69%), Gaps = 3/149 (2%)
Query: 1   QFQEIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTL 59
            F+   +QL   ++   KP   + L FG  FTDHML +E+N++  GW  PR+ P + LTL
Sbjct: 4   SFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK--GWGQPRIQPFQNLTL 61
Query: 60  HPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 119
           HPA+  LHYS++LFEGMKA++G D  +R+FRP +NMDRM RSA+R  LP FD  E+++C+
Sbjct: 62  HPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECI 121
Query: 120 NRLIQIDQEWVPHTTAASLYIRPTLIGTD 148
            RLI++D++WVP     SLY+RP LIG +
Sbjct: 122 RRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150

>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino Acid Aminotransferase (Mitochondrial) Complexed With Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic Form) Length = 365

Iteration: 1
 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRA 259
           IQ  Q    H  ++SL+         LFEGMKA++G D  +R+FRP +NMDRM RSA+R 
Sbjct: 53  IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 260 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
            LP FD  E+++C+ RLI++D++WVP     SLY+RP LIG +
Sbjct: 108 CLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNE 150

>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial Branched Chain Aminotransferase (hbcatm) Length = 365

Iteration: 1
 Score =  157 bits (397), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 73/149 (48%), Positives = 103/149 (69%), Gaps = 3/149 (2%)
Query: 1   QFQEIHVQLCSPEQLQPKPEVSQ-LKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTL 59
            F+   +QL   ++   KP   + L FG  FTDHML +E+N++  GW  PR+ P + LTL
Sbjct: 4   SFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK--GWGQPRIQPFQNLTL 61
Query: 60  HPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 119
           HPA+  LHYS++LFEGMKA++G D  +R+FRP +NMDRM RSA+R  LP FD  E+++C+
Sbjct: 62  HPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLXLPSFDKLELLECI 121
Query: 120 NRLIQIDQEWVPHTTAASLYIRPTLIGTD 148
            RLI++D++WVP     SL +RP LIG +
Sbjct: 122 RRLIEVDKDWVPDAAGTSLXVRPVLIGNE 150

>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial Branched Chain Aminotransferase (hbcatm) Length = 365

Iteration: 1
 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Query: 200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRA 259
           IQ  Q    H  ++SL+         LFEGMKA++G D  +R+FRP +NMDRM RSA+R 
Sbjct: 53  IQPFQNLTLHPASSSLHY-----SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRL 107
Query: 260 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
            LP FD  E+++C+ RLI++D++WVP     SL +RP LIG +
Sbjct: 108 XLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLXVRPVLIGNE 150

>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain Aminotransferase- Implications For Inhibitor Design Length = 372

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
Query: 26  FGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGH 85
           FG  +TDHM+ I++    G W   +V P   + L P+A VLHY  E+FEG+KAYR  DG 
Sbjct: 35  FGKYYTDHMVSIDYTVDEG-WHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGS 93
Query: 86  IRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTA-ASLYIRPTL 144
           I  FRPE N  R+  SA R  +P+   E  I+ L +LI +D++WVP      SLY+RP +
Sbjct: 94  IVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFV 153
Query: 145 IGTDLFEGMK 154
           I T+   G++
Sbjct: 154 IATEPGLGVR 163

>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain Aminotransferase- Implications For Inhibitor Design Length = 372

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
           G ++FEG+KAYR  DG I  FRPE N  R+  SA R  +P+   E  I+ L +LI +D++
Sbjct: 77  GQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEK 136
Query: 206 WVPHTTA-ASLYIRPTLIGTDLFEGMK 231
           WVP      SLY+RP +I T+   G++
Sbjct: 137 WVPPAGGEESLYLRPFVIATEPGLGVR 163

>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain Aminotransferase- Implications For Inhibitor Design Length = 372

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
           G ++FEG+KAYR  DG I  FRPE N  R+  SA R  +P+   E  I+ L +LI +D++
Sbjct: 77  GQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEK 136
Query: 283 WVPHTTA-ASLYIRPTLIGTD 302
           WVP      SLY+RP +I T+
Sbjct: 137 WVPPAGGEESLYLRPFVIATE 157

>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched Chain Aminotransferase In Complex With Pyridoxal-5'-Phosphate At 1.9 Angstrom. Length = 373

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 26  FGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGH 85
           FG  +TDHM+ I++    G W   +V P   + L P+A VLHY  E+FEG+KAYR  DG 
Sbjct: 36  FGKYYTDHMVSIDYTVDEG-WHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGS 94
Query: 86  IRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTA-ASLYIRPTL 144
           I  FRPE N  R+  SA R  +P+   E  I+ L +LI +D++WVP      SLY+RP +
Sbjct: 95  IVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFV 154
Query: 145 IGTD 148
           I T+
Sbjct: 155 IATE 158

>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched Chain Aminotransferase In Complex With Pyridoxal-5'-Phosphate At 1.9 Angstrom. Length = 373

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
           G ++FEG+KAYR  DG I  FRPE N  R+  SA R  +P+   E  I+ L +LI +D++
Sbjct: 78  GQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEK 137
Query: 206 WVPHTTA-ASLYIRPTLIGTD 225
           WVP      SLY+RP +I T+
Sbjct: 138 WVPPAGGEESLYLRPFVIATE 158

>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched Chain Aminotransferase In Complex With Pyridoxal-5'-Phosphate At 1.9 Angstrom. Length = 373

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
           G ++FEG+KAYR  DG I  FRPE N  R+  SA R  +P+   E  I+ L +LI +D++
Sbjct: 78  GQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEK 137
Query: 283 WVPHTTA-ASLYIRPTLIGTD 302
           WVP      SLY+RP +I T+
Sbjct: 138 WVPPAGGEESLYLRPFVIATE 158

>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid Transaminase From Mycobacterium Tuberculosis Length = 368

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 26  FGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGH 85
           FG   TDHM+ I++ E  G W   RV P   + L P+A VLHY+ E+FEG+KAYR  DG 
Sbjct: 31  FGKYHTDHMVSIDYAEGRG-WHNARVIPYGPIELDPSAIVLHYAQEVFEGLKAYRWADGS 89
Query: 86  IRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTA-ASLYIRPTL 144
           I  FR + N  R+  SA R  +P+      I+ L +LI +D+ WVP      +LY+RP +
Sbjct: 90  IVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWVPGAGGEEALYLRPFI 149
Query: 145 IGTD 148
             T+
Sbjct: 150 FATE 153

>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid Transaminase From Mycobacterium Tuberculosis Length = 368

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 148 DLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWV 207
           ++FEG+KAYR  DG I  FR + N  R+  SA R  +P+      I+ L +LI +D+ WV
Sbjct: 75  EVFEGLKAYRWADGSIVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWV 134
Query: 208 PHTTA-ASLYIRPTLIGTD 225
           P      +LY+RP +  T+
Sbjct: 135 PGAGGEEALYLRPFIFATE 153

>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid Transaminase From Mycobacterium Tuberculosis Length = 368

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 225 DLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWV 284
           ++FEG+KAYR  DG I  FR + N  R+  SA R  +P+      I+ L +LI +D+ WV
Sbjct: 75  EVFEGLKAYRWADGSIVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWV 134
Query: 285 PHTTA-ASLYIRPTLIGTD 302
           P      +LY+RP +  T+
Sbjct: 135 PGAGGEEALYLRPFIFATE 153

>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase From Streptococcus Mutans Length = 345

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 44  GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSAL 103
           G W   +++    L +  ++  LHY  E FEG+KAYR  DG +++FRP MN +R+ R+A 
Sbjct: 32  GKWDDGKLTEDATLHISESSPALHYGQEAFEGLKAYRTKDGSVQLFRPNMNAERLQRTAD 91
Query: 104 RAGLPQFDPEEMIQCLNRLIQIDQEWV-PHTTAASLYIRPTLIGT 147
           R  +PQ   ++ I    ++++ ++E+V P+ T A+LY+RP LIG 
Sbjct: 92  RLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGV 136

>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase From Streptococcus Mutans Length = 345

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 63/97 (64%), Gaps = 5/97 (5%)
Query: 210 TTAASLYIR---PTL-IGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFD 265
           T  A+L+I    P L  G + FEG+KAYR  DG +++FRP MN +R+ R+A R  +PQ  
Sbjct: 40  TEDATLHISESSPALHYGQEAFEGLKAYRTKDGSVQLFRPNMNAERLQRTADRLLMPQVP 99
Query: 266 PEEMIQCLNRLIQIDQEWV-PHTTAASLYIRPTLIGT 301
            ++ I    ++++ ++E+V P+ T A+LY+RP LIG 
Sbjct: 100 TDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGV 136

>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From Deinococcus Radiodurans Complexes With Alpha-Ketoisocaproate And L-Glutamate Suggest Its Radio-Resistance For Catalysis Length = 358

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 12  PEQLQPKPEV--SQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYS 69
           PEQ +   ++  S L F  + TD  L+   + + G W A  ++    + L   +  LHY 
Sbjct: 15  PEQAKKLADIDWSTLGFSYIRTD--LRYLAHWKDGEWDAGTLTEDNQIHLAEGSTALHYG 72
Query: 70  VELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEW 129
            + FEG+KAYR  DG I +FRP+ N  RM  S  R  +P+   E+ I    ++++ ++ +
Sbjct: 73  QQCFEGLKAYRCADGSINLFRPDQNAARMRMSCRRLLMPELSDEQFIDACLQVVRANEHF 132
Query: 130 V-PHTTAASLYIRPTLIG 146
           + P+ T  SLY+RP +IG
Sbjct: 133 LPPYGTGGSLYLRPFVIG 150

>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From Deinococcus Radiodurans Complexes With Alpha-Ketoisocaproate And L-Glutamate Suggest Its Radio-Resistance For Catalysis Length = 358

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
           G   FEG+KAYR  DG I +FRP+ N  RM  S  R  +P+   E+ I    ++++ ++ 
Sbjct: 72  GQQCFEGLKAYRCADGSINLFRPDQNAARMRMSCRRLLMPELSDEQFIDACLQVVRANEH 131
Query: 206 WV-PHTTAASLYIRPTLIG 223
           ++ P+ T  SLY+RP +IG
Sbjct: 132 FLPPYGTGGSLYLRPFVIG 150

>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From Deinococcus Radiodurans Complexes With Alpha-Ketoisocaproate And L-Glutamate Suggest Its Radio-Resistance For Catalysis Length = 358

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
           G   FEG+KAYR  DG I +FRP+ N  RM  S  R  +P+   E+ I    ++++ ++ 
Sbjct: 72  GQQCFEGLKAYRCADGSINLFRPDQNAARMRMSCRRLLMPELSDEQFIDACLQVVRANEH 131
Query: 283 WV-PHTTAASLYIRPTLIG 300
           ++ P+ T  SLY+RP +IG
Sbjct: 132 FLPPYGTGGSLYLRPFVIG 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
2coi_A	386	Branched chain aminotransferase 1, cytosolic; PLP-	6e-74
2coi_A	386	Branched chain aminotransferase 1, cytosolic; PLP-	2e-43
2coi_A	386	Branched chain aminotransferase 1, cytosolic; PLP-	2e-43
2a1h_A	365	Branched chain aminotransferase; fold type IV; HET	8e-74
2a1h_A	365	Branched chain aminotransferase; fold type IV; HET	2e-43
2a1h_A	365	Branched chain aminotransferase; fold type IV; HET	2e-43
3dth_A	372	Branched-chain amino acid aminotransferase; open t	5e-67
3dth_A	372	Branched-chain amino acid aminotransferase; open t	5e-39
3dth_A	372	Branched-chain amino acid aminotransferase; open t	6e-39
3u0g_A	328	Putative branched-chain amino acid aminotransfera;	5e-07
3u0g_A	328	Putative branched-chain amino acid aminotransfera;	2e-05
3u0g_A	328	Putative branched-chain amino acid aminotransfera;	4e-05
3sno_A	315	Hypothetical aminotransferase; D-aminoacid aminotr	2e-06
3sno_A	315	Hypothetical aminotransferase; D-aminoacid aminotr	1e-05
3sno_A	315	Hypothetical aminotransferase; D-aminoacid aminotr	7e-05
1iye_A	309	Branched-chain amino acid aminotransferase; hexame	6e-06
1iye_A	309	Branched-chain amino acid aminotransferase; hexame	5e-04
2eiy_A	308	ILVE, branched-chain amino acid aminotransferase;	7e-06
2eiy_A	308	ILVE, branched-chain amino acid aminotransferase;	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
3lul_A	272	4-amino-4-deoxychorismate lyase; structural genomi	1e-05
3lul_A	272	4-amino-4-deoxychorismate lyase; structural genomi	1e-04
3csw_A	285	BCAT, putative branched-chain-amino-acid aminotran	2e-05
3csw_A	285	BCAT, putative branched-chain-amino-acid aminotran	6e-04
3csw_A	285	BCAT, putative branched-chain-amino-acid aminotran	8e-04
2zgi_A	246	Putative 4-amino-4-deoxychorismate lyase; TTHA0621	7e-04
3qqm_A	221	MLR3007 protein; structural genomics, joint center	8e-04
2xpf_A	292	4-amino-4-deoxychorismate lyase; para-aminobenzoic	9e-04

>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Length = 386

 Score =  230 bits (590), Expect = 6e-74
 Identities = 81/143 (56%), Positives = 113/143 (79%), Gaps = 1/143 (0%)

Query: 13  EQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVEL 72
             L+ KP+ + L FGTVFTDHML +E++ +  GW+ P + PL+ L+LHP +  LHY+VEL
Sbjct: 36  TILKEKPDPNNLVFGTVFTDHMLTVEWSSE-FGWEKPHIKPLQNLSLHPGSSALHYAVEL 94

Query: 73  FEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPH 132
           FEG+KA+RGVD  IR+F+P +NMDRM RSA+RA LP FD EE+++C+ +L+++DQEWVP+
Sbjct: 95  FEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPY 154

Query: 133 TTAASLYIRPTLIGTDLFEGMKA 155
           +T+ASLYIRPT IGT+   G+K 
Sbjct: 155 STSASLYIRPTFIGTEPSLGVKK 177

>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Length = 386

 Score =  151 bits (384), Expect = 2e-43
 Identities = 50/80 (62%), Positives = 69/80 (86%)

Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
             +LFEG+KA+RGVD  IR+F+P +NMDRM RSA+RA LP FD EE+++C+ +L+++DQE
Sbjct: 91  AVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQE 150

Query: 283 WVPHTTAASLYIRPTLIGTD 302
           WVP++T+ASLYIRPT IGT+
Sbjct: 151 WVPYSTSASLYIRPTFIGTE 170

>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Length = 386

 Score =  151 bits (384), Expect = 2e-43
 Identities = 51/87 (58%), Positives = 72/87 (82%)

Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
             +LFEG+KA+RGVD  IR+F+P +NMDRM +SA+RA LP FD EE+++C+ +L+++DQE
Sbjct: 91  AVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQE 150

Query: 206 WVPHTTAASLYIRPTLIGTDLFEGMKA 232
           WVP++T+ASLYIRPT IGT+   G+K 
Sbjct: 151 WVPYSTSASLYIRPTFIGTEPSLGVKK 177

>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Length = 365

 Score =  229 bits (587), Expect = 8e-74
 Identities = 72/152 (47%), Positives = 103/152 (67%), Gaps = 3/152 (1%)

Query: 4   EIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAA 63
           ++ +++      +P P    L FG  FTDHML +E+N+   GW  PR+ P + LTLHPA+
Sbjct: 9   DLQLEMTQKPHKKPGPG-EPLVFGKTFTDHMLMVEWND--KGWGQPRIQPFQNLTLHPAS 65

Query: 64  KVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLI 123
             LHYS++LFEGMKA++G D  +R+FRP +NMDRM RSA+R  LP FD  E+++C+ RLI
Sbjct: 66  SSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLI 125

Query: 124 QIDQEWVPHTTAASLYIRPTLIGTDLFEGMKA 155
           ++D++WVP     SLY+RP LIG +   G+  
Sbjct: 126 EVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQ 157

>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Length = 365

 Score =  151 bits (383), Expect = 2e-43
 Identities = 43/80 (53%), Positives = 59/80 (73%)

Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
              LFEGMKA++G D  +R+FRP +NMDRM RSA+R  LP FD  E+++C+ RLI++D++
Sbjct: 71  SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKD 130

Query: 283 WVPHTTAASLYIRPTLIGTD 302
           WVP     SLY+RP LIG +
Sbjct: 131 WVPDAAGTSLYVRPVLIGNE 150

>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Length = 365

 Score =  151 bits (383), Expect = 2e-43
 Identities = 43/87 (49%), Positives = 61/87 (70%)

Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
              LFEGMKA++G D  +R+FRP +NMDRM +SA+R  LP FD  E+++C+ RLI++D++
Sbjct: 71  SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKD 130

Query: 206 WVPHTTAASLYIRPTLIGTDLFEGMKA 232
           WVP     SLY+RP LIG +   G+  
Sbjct: 131 WVPDAAGTSLYVRPVLIGNEPSLGVSQ 157

>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Length = 328

 Score = 49.5 bits (119), Expect = 5e-07
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 21/106 (19%)

Query: 58  TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEEM 115
            +H     LHY + +FEG++AY+  DG   +FR + +  R+  SA   +  +P FD E +
Sbjct: 44  KIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVP-FDQETL 102

Query: 116 IQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDG 161
                 +++ ++         S Y+RP             + G + 
Sbjct: 103 EAAQRDVVRENK-------LESCYLRPI-----------IWIGSEK 130

>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Length = 328

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 21/95 (22%)

Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSA--LRAGLPQFDPEEMIQCLNRLIQID 203
           G  +FEG++AY+  DG   +FR + +  R+  SA   +  +P FD E +      +++ +
Sbjct: 55  GMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVP-FDQETLEAAQRDVVREN 113

Query: 204 QEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDG 238
           +         S Y+RP             + G + 
Sbjct: 114 K-------LESCYLRPI-----------IWIGSEK 130

>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Length = 328

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 10/76 (13%)

Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEEMIQCLNRLIQID 280
           G  +FEG++AY+  DG   +FR + +  R+  SA   +  +P FD E +      +++ +
Sbjct: 55  GMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVP-FDQETLEAAQRDVVREN 113

Query: 281 QEWVPHTTAASLYIRP 296
           +         S Y+RP
Sbjct: 114 K-------LESCYLRP 122

>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Length = 315

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 16/114 (14%)

Query: 189 PEEMIQCLNRLIQIDQEWVPHTTAASLYIRPT----LIGTDLFEGMKAYRGVDGHIRMFR 244
           P  +I     +++     +         +         G  +FE +    G         
Sbjct: 12  PTPVI----LIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIRDG-----HACN 62

Query: 245 PEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTL 298
              + +R   SA   GLP+   E+  +     I   + W  H  A       TL
Sbjct: 63  VRRHGERFKASAALLGLPEPILEDWEKATQMGI---ESWYSHPNAGEASCTWTL 113

>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Length = 315

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 16/114 (14%)

Query: 112 PEEMIQCLNRLIQIDQEWVPHTTAASLYIRPT----LIGTDLFEGMKAYRGVDGHIRMFR 167
           P  +I     +++     +         +         G  +FE +    G         
Sbjct: 12  PTPVI----LIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIRDG-----HACN 62

Query: 168 PEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTL 221
              + +R   SA   GLP+   E+  +     I   + W  H  A       TL
Sbjct: 63  VRRHGERFKASAALLGLPEPILEDWEKATQMGI---ESWYSHPNAGEASCTWTL 113

>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Length = 315

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 72  LFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVP 131
           +FE +    G            + +R   SA   GLP+   E+  +     I   + W  
Sbjct: 49  IFETLLIRDG-----HACNVRRHGERFKASAALLGLPEPILEDWEKATQMGI---ESWYS 100

Query: 132 HTTAASLYIRPTL 144
           H  A       TL
Sbjct: 101 HPNAGEASCTWTL 113

>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Length = 309

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 22/106 (20%)

Query: 58  TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEEM 115
            +H  +  LHY   +FEG++ Y    G   +FR   +M R++ SA   R  +     +E+
Sbjct: 22  KVHVMSHALHYGTSVFEGIRCYDSHKG-PVVFRHREHMQRLHDSAKIYRFPVS-QSIDEL 79

Query: 116 IQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDG 161
           ++    +I+ +          S YIRP             + G  G
Sbjct: 80  MEACRDVIRKNN-------LTSAYIRPL-----------IFVGDVG 107

>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Length = 309

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 11/76 (14%)

Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEEMIQCLNRLIQID 280
           GT +FEG++ Y    G   +FR   +M R++ SA   R  +     +E+++    +I+ +
Sbjct: 33  GTSVFEGIRCYDSHKG-PVVFRHREHMQRLHDSAKIYRFPVS-QSIDELMEACRDVIRKN 90

Query: 281 QEWVPHTTAASLYIRP 296
                     S YIRP
Sbjct: 91  N-------LTSAYIRP 99

>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Length = 308

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 22/106 (20%)

Query: 58  TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEEM 115
                +  LHY   +FEG++AY    G   +FR + ++ R   SA  LR  +P F PEE+
Sbjct: 21  KTSVLSHALHYGTSVFEGIRAYETAKG-PAIFRLKEHVKRFYNSAKVLRMEIP-FAPEEL 78

Query: 116 IQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDG 161
            + +  +++ +          S YIRP            A+ G   
Sbjct: 79  EEAIKEVVRRNG-------YRSCYIRPL-----------AWMGAKA 106

>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Length = 308

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 11/76 (14%)

Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA--LRAGLPQFDPEEMIQCLNRLIQID 280
           GT +FEG++AY    G   +FR + ++ R   SA  LR  +P F PEE+ + +  +++ +
Sbjct: 32  GTSVFEGIRAYETAKG-PAIFRLKEHVKRFYNSAKVLRMEIP-FAPEELEEAIKEVVRRN 89

Query: 281 QEWVPHTTAASLYIRP 296
                     S YIRP
Sbjct: 90  G-------YRSCYIRP 98

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 8e-06
 Identities = 46/337 (13%), Positives = 99/337 (29%), Gaps = 97/337 (28%)

Query: 1   QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLH 60
            + E   +L +  Q+  K  VS+L+        +L++               P K + + 
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR--------------PAKNVLID 156

Query: 61  PAAKVLHYSVELFEGMK----------AYRGVDGHIRMFRPE--MNMDRMNRSALRAGLP 108
                         G+                    +M      +N+   N         
Sbjct: 157 --------------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-------- 194

Query: 109 QFDPEEMIQCLNRLI-QIDQEWVPHTTAASLYIRPTLIGTD----LFEGMKAYRG----V 159
              PE +++ L +L+ QID  W   +  +S               L +  K Y      +
Sbjct: 195 ---PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVL 250

Query: 160 D-----GHIRMF----------RPEMNMDRMN-----QSALRAGLPQFDPEEMIQCLNRL 199
                      F          R +   D ++       +L        P+E+   L + 
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 200 IQIDQEWVPHTTAASLYIRP---TLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA 256
           +    + +P      L   P   ++I   + +G+            ++  +N D++    
Sbjct: 311 LDCRPQDLPR---EVLTTNPRRLSIIAESIRDGLA-------TWDNWK-HVNCDKLTT-I 358

Query: 257 LRAGLPQFDPEEMIQCLNRL-IQIDQEWVPHTTAASL 292
           + + L   +P E  +  +RL +      +P    + +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Length = 272

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 15/108 (13%), Positives = 30/108 (27%), Gaps = 24/108 (22%)

Query: 55  KYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPE 113
                      +     LFE ++         +     M+ +R+  SA + G+P +   +
Sbjct: 12  DMTPSFGIDDRIFLGEGLFETIRVNSS-----KPSFAYMHWERLGNSARQLGIPFEISFD 66

Query: 114 EMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDG 161
           +  + L + IQ D             I+                G   
Sbjct: 67  DWFEHLIQKIQKDN-------LYHGGIKAI-----------LSGGPAS 96

>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Length = 272

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 13/77 (16%)

Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLIQIDQ 281
           G  LFE ++         +     M+ +R+  SA + G+P +   ++  + L + IQ D 
Sbjct: 26  GEGLFETIRVNSS-----KPSFAYMHWERLGNSARQLGIPFEISFDDWFEHLIQKIQKDN 80

Query: 282 EWVPHTTAASLYIRPTL 298
                       I+  L
Sbjct: 81  -------LYHGGIKAIL 90

>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Length = 285

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 14/88 (15%)

Query: 58  TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMI 116
           +L  +         ++E ++ Y         F    +  R+ RSA    LP     +E  
Sbjct: 28  SLDFSLFEKSLQGAVYETLRTYSR-----APFAAYKHYTRLKRSADFFNLPLSLSFDEFT 82

Query: 117 QCLNRLIQIDQEWVPHTTAASLYIRPTL 144
           + L       ++         + I+  L
Sbjct: 83  KVLKAGADEFKQ--------EVRIKVYL 102

>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Length = 285

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 14/77 (18%)

Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLIQIDQ 281
              ++E ++ Y         F    +  R+ RSA    LP     +E  + L       +
Sbjct: 39  QGAVYETLRTYSR-----APFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGADEFK 93

Query: 282 EWVPHTTAASLYIRPTL 298
           +         + I+  L
Sbjct: 94  Q--------EVRIKVYL 102

>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Length = 285

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 14/77 (18%)

Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRLIQIDQ 204
              ++E ++ Y         F    +  R+ +SA    LP     +E  + L       +
Sbjct: 39  QGAVYETLRTYSR-----APFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGADEFK 93

Query: 205 EWVPHTTAASLYIRPTL 221
           +         + I+  L
Sbjct: 94  Q--------EVRIKVYL 102

>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Length = 246

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 13/87 (14%)

Query: 58  TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQ 117
            L      L++   +F  ++A     G       E ++ R+ R AL  GL     E  ++
Sbjct: 10  ALALPEAFLYHGASVFTTLRAE---GGRP--LWLEEHLARLRRHALALGLSYPGDEAFLE 64

Query: 118 CLNRLIQIDQEWVPHTTAASLYIRPTL 144
            L  L++   +        +  +R   
Sbjct: 65  DLEALLRAFPK--------APCLRLRF 83

>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Length = 221

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 66  LHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQ 124
                EL E M+   G        R + ++ R+  SA   G    DP+ + + L+  + 
Sbjct: 12  DTADFELIETMRWQPGT----SFLRFDRHLARLYGSAAELGFA-CDPQRIAEVLSDALD 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
3dtg_A	372	Branched-chain amino acid aminotransferase; open t	100.0
2coi_A	386	Branched chain aminotransferase 1, cytosolic; PLP-	100.0
3dth_A	372	Branched-chain amino acid aminotransferase; open t	100.0
3uzo_A	358	Branched-chain-amino-acid aminotransferase; BCAT,	100.0
4dqn_A	345	Putative branched-chain amino acid aminotransfera;	100.0
2a1h_A	365	Branched chain aminotransferase; fold type IV; HET	100.0
3u0g_A	328	Putative branched-chain amino acid aminotransfera;	99.93
3daa_A	277	D-amino acid aminotransferase; pyridoxal phosphate	99.92
1iye_A	309	Branched-chain amino acid aminotransferase; hexame	99.89
2eiy_A	308	ILVE, branched-chain amino acid aminotransferase;	99.85
3lul_A	272	4-amino-4-deoxychorismate lyase; structural genomi	99.82
3sno_A	315	Hypothetical aminotransferase; D-aminoacid aminotr	99.79
1i2k_A	269	4-amino-4-deoxychorismate lyase; pyridoxal phospha	99.74
2xpf_A	292	4-amino-4-deoxychorismate lyase; para-aminobenzoic	99.72
2zgi_A	246	Putative 4-amino-4-deoxychorismate lyase; TTHA0621	99.68
3dth_A	372	Branched-chain amino acid aminotransferase; open t	99.65
3uzo_A	358	Branched-chain-amino-acid aminotransferase; BCAT,	99.65
4dqn_A	345	Putative branched-chain amino acid aminotransfera;	99.63
3dtg_A	372	Branched-chain amino acid aminotransferase; open t	99.62
3csw_A	285	BCAT, putative branched-chain-amino-acid aminotran	99.59
2a1h_A	365	Branched chain aminotransferase; fold type IV; HET	99.58
2coi_A	386	Branched chain aminotransferase 1, cytosolic; PLP-	99.47
3u0g_A	328	Putative branched-chain amino acid aminotransfera;	99.4
2eiy_A	308	ILVE, branched-chain amino acid aminotransferase;	99.39
3lul_A	272	4-amino-4-deoxychorismate lyase; structural genomi	99.36
3ceb_A	194	D-aminoacid aminotransferase-like PLP-dependent E;	99.31
3daa_A	277	D-amino acid aminotransferase; pyridoxal phosphate	99.26
1iye_A	309	Branched-chain amino acid aminotransferase; hexame	99.18
3sno_A	315	Hypothetical aminotransferase; D-aminoacid aminotr	99.15
3qqm_A	221	MLR3007 protein; structural genomics, joint center	99.14
2zgi_A	246	Putative 4-amino-4-deoxychorismate lyase; TTHA0621	99.12
1i2k_A	269	4-amino-4-deoxychorismate lyase; pyridoxal phospha	99.12
2xpf_A	292	4-amino-4-deoxychorismate lyase; para-aminobenzoic	99.03
3csw_A	285	BCAT, putative branched-chain-amino-acid aminotran	98.51
3ceb_A	194	D-aminoacid aminotransferase-like PLP-dependent E;	98.29
3qqm_A	221	MLR3007 protein; structural genomics, joint center	98.1

>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*

Probab=100.00  E-value=4.6e-36  Score=283.06  Aligned_cols=156  Identities=36%  Similarity=0.653  Sum_probs=137.4

Q ss_pred             CCccEEEecCCCCCCCCCCc----CCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeee
Q psy16306          2 FQEIHVQLCSPEQLQPKPEV----SQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMK   77 (302)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~----~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r   77 (302)
                      ++.|+++...++..+|++.+    .++|||++|||||++|+|+.+ .+|+||+++|+++++|||.+++||||||||||||
T Consensus         7 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~fg~~~tdhm~~~~~~~~-~gW~ng~ivp~~~~~i~p~~~~lhYG~gvFEgir   85 (372)
T 3dtg_A            7 SGPLEFTVSANTNPATDAVRESILANPGFGKYYTDHMVSIDYTVD-EGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLK   85 (372)
T ss_dssp             ---CCCEECCCSSCCCHHHHHHHHHSCCSSSCCCSEEEEEEEETT-TEEEEEEEEESCCEEECTTCTHHHHCCEEECCEE
T ss_pred             CcceEEEEeCCCCCCCcchhhhHhhccCCCCCccceeEEEEECCC-CcEeCCEEEEchhceeCcchhhhhccceeeeeEE
Confidence            45566666666654454433    478999999999999999866 7899999999999999999999999999999999


Q ss_pred             eeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCC-Cceeeecccccccccccccccc
Q psy16306         78 AYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAY  156 (302)
Q Consensus        78 ~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~-~~s~yirp~~~g~~~~~g~~~~  156 (302)
                      +|+++||++.+||+++|++||.+||++|+||.++.+++.+++.+++..|..|||... ..++||||++++++...|+++.
T Consensus        86 aY~~~dG~i~~Fr~~~h~~Rl~~Sa~~l~iP~~~~e~~~~~~~~l~~~~~~~v~~~~~~~~~YiRp~~~~~~~~lgv~p~  165 (372)
T 3dtg_A           86 AYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPS  165 (372)
T ss_dssp             EEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCCSCSCC
T ss_pred             EEECCCCeEEeeCchHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhccccCCCCceEEEEEEEeecCccCcCCC
Confidence            999999999999999999999999999999988999999999999999999999864 5899999999999988888876


Q ss_pred             cC
Q psy16306        157 RG  158 (302)
Q Consensus       157 ~~  158 (302)
                      ..
T Consensus       166 ~~  167 (372)
T 3dtg_A          166 NE  167 (372)
T ss_dssp             SE
T ss_pred             CC
Confidence            44

>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*

Probab=100.00  E-value=5.6e-35  Score=276.67  Aligned_cols=152  Identities=53%  Similarity=0.974  Sum_probs=139.4

Q ss_pred             CCccEEEecCCCCCCCCCCcCCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeec
Q psy16306          2 FQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRG   81 (302)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~   81 (302)
                      ++++++++.++++.++  +|++|+||++|||||+.++|+++ .+|+||+++|.++++|++.|++||||||||||||+|++
T Consensus        27 ~~~~~~~~~~~~~~~~--~~~~~~fg~~~td~m~~~~~~~~-~~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEg~k~y~g  103 (386)
T 2coi_A           27 AKDLIVTPATILKEKP--DPNNLVFGTVFTDHMLTVEWSSE-FGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRG  103 (386)
T ss_dssp             GGGCEECCCSSCCCCC--CCC-CCTTCCCCSEEEEEEEETT-TEECCCEEEECCCEEECTTCHHHHSCCEEECCEEEEEC
T ss_pred             cccceeeccCCcccCC--CccccCCccccccceEEEEeCCC-cEEECCEEeecccCccCcccchhhcCceeEEEEEEEeC
Confidence            5688899888877544  46899999999999999999987 78999999999999999999999999999999999999


Q ss_pred             CCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeecccccccccccccccc
Q psy16306         82 VDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAY  156 (302)
Q Consensus        82 ~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~  156 (302)
                      +||++++||+++|++||++||++|+||+++.++|.+++.++|..|+.|+|...+.++||||++++++...|+.+.
T Consensus       104 ~dg~i~~frld~H~~RL~~Sa~~l~~p~~~~e~~~~~i~~lv~~~~~~vp~~~g~~~yiR~~~~~~~~~~g~~p~  178 (386)
T 2coi_A          104 VDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKP  178 (386)
T ss_dssp             TTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCSSSSCEEEEEEEEEECCCSCSCSCC
T ss_pred             CCCceeecCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCccccCCC
Confidence            999999999999999999999999999999999999999999999999997667899999999988777777654

>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*

Probab=100.00  E-value=1.1e-34  Score=271.91  Aligned_cols=138  Identities=30%  Similarity=0.539  Sum_probs=129.1

Q ss_pred             CCCcCCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHH
Q psy16306         18 KPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDR   97 (302)
Q Consensus        18 ~~~~~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~R   97 (302)
                      .++|++|+||++|||||++|+|+++  .|+||+++|.+++.|++.|+|||||||||||||+|++.+|++++||+++|++|
T Consensus        23 ~~~~~~l~fg~~~td~m~~~~~~~~--~w~ng~i~p~~~~~i~~~d~gl~yGdgvFE~ir~y~~~dG~i~lfrl~~Hl~R  100 (358)
T 3uzo_A           23 DIDWSTLGFSYIRTDLRYLAHWKDG--EWDAGTLTEDNQIHLAEGSTALHYGQQCFEGLKAYRCADGSINLFRPDQNAAR  100 (358)
T ss_dssp             -CCGGGCCSCCCCCSCEEEEEEETT--EECCCEEESCCEEEEETTCHHHHSCCEEECCEEEEECTTSCEEECCHHHHHHH
T ss_pred             CCCcccCCCCCcccCeeEEEEEeCC--cEECCEEeEcccceeChHHcceecCcEEEEEEEEEECCCCcEeecCHHHHHHH
Confidence            4567999999999999999999986  59999999999999999999999999999999999999998999999999999


Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCC-CCceeeeccccccccccccccccc
Q psy16306         98 MNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYR  157 (302)
Q Consensus        98 l~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~  157 (302)
                      |++||++|+||+++.++|.+++.++|..|+.|||.. .+.++||||++++++...|+.+..
T Consensus       101 L~~Sa~~L~ip~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~G~~p~~  161 (358)
T 3uzo_A          101 MRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGGSLYLRPFVIGVGDNIGVRTAP  161 (358)
T ss_dssp             HHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSCCEEEEEEEEEEESSCCSSSCCS
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCCceEEEEEEEEecCCccccCCCC
Confidence            999999999999999999999999999999999975 568999999999998888877643

>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}

Probab=100.00  E-value=6.8e-34  Score=265.65  Aligned_cols=138  Identities=30%  Similarity=0.551  Sum_probs=128.7

Q ss_pred             CCCCcCCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHH
Q psy16306         17 PKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMD   96 (302)
Q Consensus        17 ~~~~~~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~   96 (302)
                      +.++|++|+||++|||||++++|+++  .|+||+++|.++++||+.|+|||||||||||||+|++.+|++++|++++|++
T Consensus         7 ~~~~~~~l~fg~~~td~m~~~~~~~~--~w~nG~~vp~~~~~i~~~d~gl~yGdgvFE~ir~~~g~dg~~~~f~l~~Hl~   84 (345)
T 4dqn_A            7 VDLDWKNLGFEYHKLPFRYISYYKDG--KWDDGKLTEDATLHISESSPALHYGQEAFEGLKAYRTKDGSVQLFRPNMNAE   84 (345)
T ss_dssp             CCCCGGGCCSCCCCCSCEEEEEEETT--EECCCEEESCCSCCCCTTCHHHHSCCEEECCEEEEECTTSCEEEESHHHHHH
T ss_pred             CCCCchhcCCCCcccCceEEEEecCC--cEECCEEeEhhhcccCccccccccccEEEEEEEEEeCCCCcccccCHHHHHH
Confidence            34567999999999999999999996  5999999999999999999999999999999999999989888999999999


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCC-CCceeeecccccccccccccccc
Q psy16306         97 RMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAY  156 (302)
Q Consensus        97 Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~  156 (302)
                      ||.+||++|+||+++.++|.+++.++|..|+.|||.. .+.++||||++++++...|+.+.
T Consensus        85 RL~~Sa~~L~i~~~~~~~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~g~~p~  145 (345)
T 4dqn_A           85 RLQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGVGDVIGVHPA  145 (345)
T ss_dssp             HHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSSCEEEEEEEEEEESCCCSSCCC
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEeCCCccCCCCC
Confidence            9999999999999999999999999999999999985 56799999999998877777654

>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*

Probab=100.00  E-value=1.5e-33  Score=265.52  Aligned_cols=151  Identities=47%  Similarity=0.932  Sum_probs=138.2

Q ss_pred             CCccEEEecCCCCCCCCCCc-CCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeee
Q psy16306          2 FQEIHVQLCSPEQLQPKPEV-SQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYR   80 (302)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~   80 (302)
                      +++++++++++++.+++  + ++|+||++|||||+.++|++  .+|+||+++|.++++|++.|++||||||||||||+|+
T Consensus         7 ~~~~~~~~~~~~~~~~~--~~~~l~fg~~~~d~m~~~~~~~--~~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEt~r~y~   82 (365)
T 2a1h_A            7 AADLQLEMTQKPHKKPG--PGEPLVFGKTFTDHMLMVEWND--KGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFK   82 (365)
T ss_dssp             GGGCEECCCSSCCCCCC--TTSCCCTTCSCCSEEEEEEEET--TEECCCEEEESCCEEECTTBHHHHSCCEEECCEEEEE
T ss_pred             hhhceeccCCCccCCCc--cccccCcCCccccceeeeeccc--CeEECCEEeEcccceeCccchhhhcCceeEeEEEEEe
Confidence            45788888888875554  5 89999999999999999988  6999999999999999999999999999999999999


Q ss_pred             cCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeecccccccccccccccc
Q psy16306         81 GVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAY  156 (302)
Q Consensus        81 ~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~  156 (302)
                      +.+|++++|++++|++||.+||++|+||+++.++|.+++.++|..|+.|+|...+.++||||++++++...|+.+.
T Consensus        83 g~dG~i~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~lv~~~~~~~p~~~g~~~yiR~~~~~~~~~~g~~p~  158 (365)
T 2a1h_A           83 GKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQP  158 (365)
T ss_dssp             CTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCC
T ss_pred             cCCCceeecCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCC
Confidence            9899899999999999999999999999999999999999999999999987666789999999998877777644

>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}

Probab=99.93  E-value=2.9e-27  Score=219.45  Aligned_cols=115  Identities=23%  Similarity=0.377  Sum_probs=102.8

Q ss_pred             cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306         44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  122 (302)
Q Consensus        44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l  122 (302)
                      .+|+||+++|.++++||+.|+||+||||||||||+|++++|++++|++++|++||.+||++|+|| +++.++|.+++.++
T Consensus        30 ~~w~nG~~vp~~~~~i~~~drg~~yGdgvFEtir~~~~~dG~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l  109 (328)
T 3u0g_A           30 KIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDV  109 (328)
T ss_dssp             EEEETTEEEEGGGCEEESSCHHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHH
T ss_pred             EEEECCEEeehHhCccCccchHHhcCceEEEEEEEEECCCCCeeeCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence            68999999999999999999999999999999999998888889999999999999999999999 89999999999999


Q ss_pred             HhhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF  166 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f  166 (302)
                      +..|+.       .+.|||++++++....|+.+.. ..+++.++
T Consensus       110 v~~n~~-------~~~~iR~~vtrg~~~~g~~p~~-~~~~~~i~  145 (328)
T 3u0g_A          110 VRENKL-------ESCYLRPIIWIGSEKLGVSAKG-NTIHVAIA  145 (328)
T ss_dssp             HHHTTC-------SSEEEEEEEEECSSCCSTTCCC-CCEEEEEE
T ss_pred             HHhcCC-------CCeEEEEEEEecCCCCCcCCCC-CCcEEEEE
Confidence            999986       6899999999988777776432 23444443

>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*

Probab=99.92  E-value=1.6e-26  Score=209.95  Aligned_cols=112  Identities=14%  Similarity=0.169  Sum_probs=92.1

Q ss_pred             cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306         44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  122 (302)
Q Consensus        44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l  122 (302)
                      ++|+||+++|.+++.||+.|+|||||||||||||+|++     ++|++++|++||.+||++|+|| +++.++|.+++.++
T Consensus         2 ~~~~nG~~~~~~~~~i~~~d~g~~yGdgvFEtir~~~g-----~~f~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~l   76 (277)
T 3daa_A            2 YTLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNG-----EMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL   76 (277)
T ss_dssp             EEEETTEEEEGGGCCBCTTBHHHHTCCEEEEEEEEETT-----EETTHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHH
T ss_pred             EEEECCEEeEhHHCeechhhhHHhcccEEEEEEEEECC-----EEcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence            58999999999999999999999999999999999976     8999999999999999999999 89999999999999


Q ss_pred             HhhccccccCCCCceeeecccccccccccccccc-cCCCCceEEec
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAY-RGVDGHIRMFR  167 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~-~~~~~~i~~f~  167 (302)
                      +..|+.       .+.++|..++.+....+...+ ....+++.++.
T Consensus        77 i~~n~~-------~~~~lri~vtrG~~~r~~~~p~~~~~~~~~i~~  115 (277)
T 3daa_A           77 VEKNEL-------NTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYT  115 (277)
T ss_dssp             HHHHTC-------CSEEEEEEEESCBCSCCSSCCSSCCCCEEEEEE
T ss_pred             HHhcCC-------CcEEEEEEEEecCCCcCCCCCCCCCCcEEEEEE
Confidence            999985       334555555554433343322 23345555553

>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*

Probab=99.89  E-value=2.4e-24  Score=198.41  Aligned_cols=115  Identities=23%  Similarity=0.401  Sum_probs=100.2

Q ss_pred             cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306         44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  122 (302)
Q Consensus        44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l  122 (302)
                      .+|+||+++|.++++|++.|+|++||||||||||+|++++|+ ++|++++|++||.+||+.|+|| +++.+++.+++.++
T Consensus         8 ~~~~ng~~~~~~~~~i~~~d~g~~yG~gvFEtir~~~~~~G~-~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~   86 (309)
T 1iye_A            8 YIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDV   86 (309)
T ss_dssp             EEEETTEEEEGGGCCCCTTCHHHHHCCEEECCEEEECCTTSS-EEETHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred             eEEECCEEEEhHHcccCccchHHhccceeEEEEEEEECCCCc-EEcCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            589999999999999999999999999999999999776664 7899999999999999999999 89999999999999


Q ss_pred             HhhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF  166 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f  166 (302)
                      +..|+.       .+.|+|++++++....|+.+.....+++.++
T Consensus        87 ~~~~~~-------~~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~  123 (309)
T 1iye_A           87 IRKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIA  123 (309)
T ss_dssp             HHHTTC-------SSEEEEEEEEECSSCSSSSCCTTCCEEEEEE
T ss_pred             HHhcCC-------CCEEEEEEEEeCCCccCCCCCCCCCcEEEEE
Confidence            999974       6789999999987666766443334444443

>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*

Probab=99.85  E-value=1e-21  Score=180.76  Aligned_cols=114  Identities=23%  Similarity=0.373  Sum_probs=100.0

Q ss_pred             cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306         44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  122 (302)
Q Consensus        44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l  122 (302)
                      .+|+||+++|.+++.|++.|+|++||+|||||||+|++.+|. ++|++++|++||.+||+.|+|| +++.+++.+++.++
T Consensus         7 ~~~~nG~~~~~~~~~i~~~d~g~~yG~gvFEtir~~~g~~g~-~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~   85 (308)
T 2eiy_A            7 LIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGP-AIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEV   85 (308)
T ss_dssp             SEEETTEEECGGGCCCCTTCHHHHHCCEEECCEEEECCTTSC-EEETHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHH
T ss_pred             eEEECCEEeEhHHCccCccchHhhhcceEEEEEEEECCCCcc-cccCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            689999999999999999999999999999999999998886 8999999999999999999999 89999999999999


Q ss_pred             HhhccccccCCCCceeeecccccccccccccccccCCCCceEE
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRM  165 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~  165 (302)
                      +..|+.       .+.|+|+++++++...|..+.....+++.+
T Consensus        86 ~~~~~~-------~~~~iR~~v~~g~~~~~~~p~~~~~~~~~i  121 (308)
T 2eiy_A           86 VRRNGY-------RSCYIRPLAWMGAKALGVNPLPNNPAEVMV  121 (308)
T ss_dssp             HHHTTC-------SSEEEEEEEECCSSCCSSCCGGGCSCEEEE
T ss_pred             HHhCCC-------CcEEEEEEEEecCCccCcCCCCCCCeEEEE
Confidence            999974       578999999988766666544222344433

>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}

Probab=99.82  E-value=2.3e-20  Score=168.94  Aligned_cols=106  Identities=18%  Similarity=0.147  Sum_probs=90.3

Q ss_pred             cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306         44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  122 (302)
Q Consensus        44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l  122 (302)
                      .+|+||    .+++.||+.|+|++||+|||||||+|++     ++|++++|++||.+||+.|+|| +++.+++.+++.++
T Consensus         5 ~~~~nG----~~~a~i~~~d~g~~yG~gvFEtir~~~g-----~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l   75 (272)
T 3lul_A            5 RVIEDK----GDMTPSFGIDDRIFLGEGLFETIRVNSS-----KPSFAYMHWERLGNSARQLGIPFEISFDDWFEHLIQK   75 (272)
T ss_dssp             EECCCC----C--CCCCCTTBGGGGTCEEEEEEEEETT-----EESSHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHH
T ss_pred             EEEECC----ccccccCCccchhhcceEeEEEEEEECC-----EeCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            489999    8899999999999999999999999976     8999999999999999999999 78999999999999


Q ss_pred             HhhccccccCCCCceeeecccccccccccccccccCCCCceEE
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRM  165 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~  165 (302)
                      +..|+.       .+.|+|+.++++....|+.+.....+++.+
T Consensus        76 ~~~~~~-------~~~~irl~v~rg~~~~g~~~~~~~~~~~~~  111 (272)
T 3lul_A           76 IQKDNL-------YHGGIKAILSGGPASRGLAERGQVSQLIFQ  111 (272)
T ss_dssp             HHHTTC-------SSEEEEEEEECCBCCSSTTCCCSSEEEEEE
T ss_pred             HHhcCC-------CCEEEEEEEEecCCccCcCCCCCCCcEEEE
Confidence            999985       678999999987766666654443344433

>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}

Probab=99.79  E-value=1.4e-19  Score=166.98  Aligned_cols=95  Identities=15%  Similarity=-0.002  Sum_probs=85.4

Q ss_pred             cceeC---Cee--ccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHH
Q psy16306         44 GGWQA---PRV--SPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQC  118 (302)
Q Consensus        44 ~~w~~---g~~--~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~  118 (302)
                      .+|+|   |++  +|.+++.||+.|+||+||||||||||+|++     ++|++++|++||.+||+.|+||.++.+++.++
T Consensus        16 ~v~~n~~~G~~~~~~~~~a~i~~~Drg~~yGdgvFEtirv~~G-----~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~l~~~   90 (315)
T 3sno_A           16 ILIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIRDG-----HACNVRRHGERFKASAALLGLPEPILEDWEKA   90 (315)
T ss_dssp             EEEECSTTCCEEEECTTSCCCCTTBTTTTTCCEEEEEEEEETT-----EETTHHHHHHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred             EEEEECCCCeEEEeeHHHCcccccchHhhcCCEeEEEEEEECC-----EECCHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence            48889   999  999999999999999999999999999975     89999999999999999999994489999999


Q ss_pred             HHHHHhh----ccccccCCCCceeeecccccccccc
Q psy16306        119 LNRLIQI----DQEWVPHTTAASLYIRPTLIGTDLF  150 (302)
Q Consensus       119 ~~~lv~~----Ng~~vp~~~~~s~yirp~~~g~~~~  150 (302)
                      +.+++..    |+.       .+.|+|++++++...
T Consensus        91 i~~~v~~~~~~n~~-------~~~~iRl~vtrG~~~  119 (315)
T 3sno_A           91 TQMGIESWYSHPNA-------GEASCTWTLSRGRSS  119 (315)
T ss_dssp             HHHHHHHHHTC--C-------CCEEEEEEEECCBTT
T ss_pred             HHHHHHhhcccCCC-------CCEEEEEEEEeCCCC
Confidence            9999988    443       678999999986543

>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*

Probab=99.74  E-value=3.4e-18  Score=154.36  Aligned_cols=104  Identities=9%  Similarity=0.001  Sum_probs=87.3

Q ss_pred             ceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q psy16306         45 GWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQ  124 (302)
Q Consensus        45 ~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~  124 (302)
                      +|+||+    .++.|++.|+|++||||||||||+|+|     ++|++++|++||.+||+.|+||..+.+++.+++.+++.
T Consensus         2 ~~~nG~----~~~~i~~~d~g~~yG~gvfEtir~~~G-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~~~   72 (269)
T 1i2k_A            2 FLINGH----KQESLAVSDRATQFGDGCFTTARVIDG-----KVSLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTLAA   72 (269)
T ss_dssp             EEETTE----EESCCCTTCHHHHHCCEEEEEEEEETT-----EETTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred             EEECCC----cCCccCccccccccceeEEEEEEEECC-----EEecHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            689999    468899999999999999999999965     89999999999999999999993399999999999987


Q ss_pred             hccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306        125 IDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF  166 (302)
Q Consensus       125 ~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f  166 (302)
                      .+         .+.|+|+.++++....|..+.....+++.+.
T Consensus        73 ~~---------~~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~  105 (269)
T 1i2k_A           73 EQ---------QNGVLKVVISRGSGGRGYSTLNSGPATRILS  105 (269)
T ss_dssp             HH---------CSEEEEEEEECCSCCSTTCCTTCCCCEEEEE
T ss_pred             hC---------CCeEEEEEEEcCCCCCCCCCccCCCcEEEEE
Confidence            64         2569999999887666766554445555444

>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}

Probab=99.68  E-value=3.5e-17  Score=145.85  Aligned_cols=91  Identities=21%  Similarity=0.243  Sum_probs=80.0

Q ss_pred             ceeCCeeccCCCcccCccchhhhc-CCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306         45 GWQAPRVSPLKYLTLHPAAKVLHY-SVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  122 (302)
Q Consensus        45 ~w~~g~~~~~~~~~i~~~~~~~~y-G~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l  122 (302)
                      .|+||+.+      +++.|+|++| |+|||||||+|+|     ++|++++|++||.+||+.|+|| +++ +++.+++.++
T Consensus         2 ~~~nG~~~------~~~~d~g~~y~G~gvFEtir~~~G-----~~~~l~~Hl~RL~~Sa~~l~~~~p~~-~~l~~~i~~~   69 (246)
T 2zgi_A            2 RLLNGTPL------ALALPEAFLYHGASVFTTLRAEGG-----RPLWLEEHLARLRRHALALGLSYPGD-EAFLEDLEAL   69 (246)
T ss_dssp             EEETTEEC------CCSSCHHHHHSCCCEEEEEEEETT-----EETTHHHHHHHHHHHHHHTTCCCCCH-HHHHHHHHHH
T ss_pred             EEECCccc------CCCccCcccccCeeEEEEEEEECC-----EeCCHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Confidence            58899954      4999999999 9999999999975     8999999999999999999999 777 9999999999


Q ss_pred             Hhhc-cccccCCCCceeeecccccccccccccc
Q psy16306        123 IQID-QEWVPHTTAASLYIRPTLIGTDLFEGMK  154 (302)
Q Consensus       123 v~~N-g~~vp~~~~~s~yirp~~~g~~~~~g~~  154 (302)
                      +..| +.       .+.|+|+++++++...+..
T Consensus        70 ~~~~~~~-------~~~~vR~~v~~g~~~~~~~   95 (246)
T 2zgi_A           70 LRAFPKA-------PCLRLRFTVGEGVRLSEAR   95 (246)
T ss_dssp             TTSCTTC-------SEEEEEEEEETTEEEEEEE
T ss_pred             HHhcCCC-------CCEEEEEEEECCCCccCcC
Confidence            9887 43       6889999999876655443

>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*

Probab=99.65  E-value=8.3e-18  Score=157.45  Aligned_cols=172  Identities=23%  Similarity=0.324  Sum_probs=128.0

Q ss_pred             hhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Q psy16306        124 QIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQI  202 (302)
Q Consensus       124 ~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~  202 (302)
                      |.||.++|.+ ...++..|.++||+++|||++++++.++.+.+|++++|++||.+||+++.||+++.+++.+.+..++..
T Consensus        49 w~ng~i~p~~~~~i~~~d~gl~yGdgvFE~ir~y~~~dG~i~lfrl~~Hl~RL~~Sa~~L~ip~~~~e~l~~~i~~lv~~  128 (358)
T 3uzo_A           49 WDAGTLTEDNQIHLAEGSTALHYGQQCFEGLKAYRCADGSINLFRPDQNAARMRMSCRRLLMPELSDEQFIDACLQVVRA  128 (358)
T ss_dssp             ECCCEEESCCEEEEETTCHHHHSCCEEECCEEEEECTTSCEEECCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred             EECCEEeEcccceeChHHcceecCcEEEEEEEEEECCCCcEeecCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            7899999986 478889999999999999999998888889999999999999999999999988999999999999999


Q ss_pred             cccccccC-CCceeeecceeeccccccccccccCCC------CccccCCchhhHHHHHHHHHHhCCC-CCC-----HHHH
Q psy16306        203 DQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVD------GHIRMFRPEMNMDRMNRSALRAGLP-QFD-----PEEM  269 (302)
Q Consensus       203 ng~~vp~~-~~~s~ylr~~l~g~~~feG~r~~~~~~------~~~~if~~~~h~~RL~~Sa~~r~~~-~~~-----~~~l  269 (302)
                      |+.|+|.. ...++|+|+++++++...|+.+.....      +....+.......++..|.+.|..| ...     ...+
T Consensus       129 n~~~vp~~~~~~~~yiR~~v~~~~~~~G~~p~~~~~~~i~~~P~~~~~~~g~~~v~l~~~~~~R~~p~~~~~~K~~~NYl  208 (358)
T 3uzo_A          129 NEHFLPPYGTGGSLYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYFKGGLTPTNFITSDYDRAAPHGTGAAKVGGNYA  208 (358)
T ss_dssp             TGGGSCCTTSCCEEEEEEEEEEESSCCSSSCCSEEEEEEEEEEECCSSCSSSCCEEEECCSCCSSCTTSSTTSCBHHHHH
T ss_pred             cCCcCCCCCCCceEEEEEEEEecCCccccCCCCCeEEEEEEecChhhhhcCCccEEEEEEeeeccCCCccccccchhhhH
Confidence            99999864 335899999999988877776532100      0000111111224444444444433 110     1111


Q ss_pred             ----------HHHHHHHHHHcC---CccCCCCcccEEEE
Q psy16306        270 ----------IQCLNRLIQIDQ---EWVPHTTAASLYIR  295 (302)
Q Consensus       270 ----------~~~~~e~l~~n~---~~v~e~~~~n~yir  295 (302)
                                .++++++|.+|.   |+|+|++.+|+|+.
T Consensus       209 ~~vla~~eA~~~G~~e~l~ld~~~~g~V~E~~~sNif~v  247 (358)
T 3uzo_A          209 ASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAI  247 (358)
T ss_dssp             HHHHHHHHHHHTTCSEECCBCTTTSCBBCBCSSSEEEEE
T ss_pred             HHHHHHHHHHHcCCCEEEEEeCCCCCeEEEcCCeeEEEE
Confidence                      244566677774   99999999999975

>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}

Probab=99.63  E-value=1.1e-17  Score=156.00  Aligned_cols=172  Identities=24%  Similarity=0.370  Sum_probs=129.3

Q ss_pred             hhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Q psy16306        124 QIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQI  202 (302)
Q Consensus       124 ~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~  202 (302)
                      |.||.++|.+ ...++..|.++||+++|||++++++.++.+.+|++++|++||.+||+.+.||+++.+++.+.+..++..
T Consensus        34 w~nG~~vp~~~~~i~~~d~gl~yGdgvFE~ir~~~g~dg~~~~f~l~~Hl~RL~~Sa~~L~i~~~~~~~l~~~i~~lv~~  113 (345)
T 4dqn_A           34 WDDGKLTEDATLHISESSPALHYGQEAFEGLKAYRTKDGSVQLFRPNMNAERLQRTADRLLMPQVPTDKFIDAAKQVVRA  113 (345)
T ss_dssp             ECCCEEESCCSCCCCTTCHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred             EECCEEeEhhhcccCccccccccccEEEEEEEEEeCCCCcccccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence            7899999986 589999999999999999999999988888999999999999999999999988999999999999999


Q ss_pred             cccccccC-CCceeeecceeeccccccccccccCCC-----Ccc-ccCCchhhHHHHHHHH-HHhCCC-CC----C-HHH
Q psy16306        203 DQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVD-----GHI-RMFRPEMNMDRMNRSA-LRAGLP-QF----D-PEE  268 (302)
Q Consensus       203 ng~~vp~~-~~~s~ylr~~l~g~~~feG~r~~~~~~-----~~~-~if~~~~h~~RL~~Sa-~~r~~~-~~----~-~~~  268 (302)
                      |+.|+|.. ...++|+|+++++++...|+.+...+.     .+. ..+.....+.|+..|. +.|..+ ..    + ...
T Consensus       114 n~~~vp~~~~~~~~yiR~~v~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~~~~gv~l~~~~~~~R~~~~~~~~~Kt~~ny  193 (345)
T 4dqn_A          114 NEEYVPPYGTGATLYLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGAAKVGGNY  193 (345)
T ss_dssp             TGGGSCCTTSSCEEEEEEEEEEESCCCSSCCCSEEEEEEEEEEECCSCTTSCCCEEEEECTTCCSSCTTSSTTSCCHHHH
T ss_pred             ccccCCCCCCCCcEEEEEEEEeCCCccCCCCCCCeEEEEEEEECccccccCCCCEEEEEccceEecCCCccccccccccC
Confidence            99999973 235899999998887777765421100     000 1111112345666666 344333 11    1 222


Q ss_pred             H----------HHHHHHHHHHcC---CccCCCCcccEEEE
Q psy16306        269 M----------IQCLNRLIQIDQ---EWVPHTTAASLYIR  295 (302)
Q Consensus       269 l----------~~~~~e~l~~n~---~~v~e~~~~n~yir  295 (302)
                      +          .++++|+|.+|.   |+|+|++.+|+|+.
T Consensus       194 l~~vla~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~v  233 (345)
T 4dqn_A          194 AASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGI  233 (345)
T ss_dssp             HHHHHHHHHHHHTTCSCEEEECTTTSCBEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEcCCceEEEE
Confidence            2          234455666775   99999999999975

>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*

Probab=99.62  E-value=1.5e-16  Score=149.74  Aligned_cols=111  Identities=35%  Similarity=0.584  Sum_probs=101.5

Q ss_pred             hhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Q psy16306        124 QIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQI  202 (302)
Q Consensus       124 ~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~  202 (302)
                      |.||.++|.+ ...++..+.++||+++|||+|+|++.++.|.+|++++|..||.+||+++.||..+.+++.+.+..++..
T Consensus        54 W~ng~ivp~~~~~i~p~~~~lhYG~gvFEgiraY~~~dG~i~~Fr~~~h~~Rl~~Sa~~l~iP~~~~e~~~~~~~~l~~~  133 (372)
T 3dtg_A           54 WHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAV  133 (372)
T ss_dssp             EEEEEEEESCCEEECTTCTHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred             EeCCEEEEchhceeCcchhhhhccceeeeeEEEEECCCCeEEeeCchHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHH
Confidence            8899999987 489999999999999999999999888999999999999999999999999977899999999999999


Q ss_pred             cccccccCC-Cceeeecceeecccccccccccc
Q psy16306        203 DQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYR  234 (302)
Q Consensus       203 ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~  234 (302)
                      |.+|+|... ..++|+||++++++...|+++..
T Consensus       134 ~~~~v~~~~~~~~~YiRp~~~~~~~~lgv~p~~  166 (372)
T 3dtg_A          134 DEKWVPPAGGEESLYLRPFVIATEPGLGVRPSN  166 (372)
T ss_dssp             HGGGSCCSSSSCEEEEEEEEEECCCCCSCSCCS
T ss_pred             hhhhccccCCCCceEEEEEEEeecCccCcCCCC
Confidence            999998754 36899999999999888887653

>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}

Probab=99.59  E-value=5.7e-16  Score=140.92  Aligned_cols=87  Identities=20%  Similarity=0.159  Sum_probs=79.5

Q ss_pred             ceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHHH
Q psy16306         45 GWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLI  123 (302)
Q Consensus        45 ~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~lv  123 (302)
                      -|.+|++++..+++|++.|+|+  |+|||||||+|++     ++|++++|++||.+||+.|+|| +++.+++.+++.+++
T Consensus        17 ~~~~~~~~~~~~~~i~~~d~g~--G~gvFEtir~~~G-----~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~l~~~i~~~~   89 (285)
T 3csw_A           17 WRGKFRRADEISLDFSLFEKSL--QGAVYETLRTYSR-----APFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGA   89 (285)
T ss_dssp             ETTEEEESSEEEEEHHHHHHHT--TCCEEEEEEEETT-----EETTHHHHHHHHHHHHHTTTCCCSSCHHHHHHHHHHHH
T ss_pred             EccCceEcccccCEeCCccccc--ceeeEEEEEEECC-----EECCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999999  9999999999975     8999999999999999999999 899999999999999


Q ss_pred             hhccccccCCCCceeeecccccc
Q psy16306        124 QIDQEWVPHTTAASLYIRPTLIG  146 (302)
Q Consensus       124 ~~Ng~~vp~~~~~s~yirp~~~g  146 (302)
                      ..|+        .+.|+|+++..
T Consensus        90 ~~~~--------~~~~iR~~v~~  104 (285)
T 3csw_A           90 DEFK--------QEVRIKVYLFP  104 (285)
T ss_dssp             TTCS--------SCEEEEEEECT
T ss_pred             HhhC--------CCeEEEEEEEc
Confidence            8875        23588888754

>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*

Probab=99.58  E-value=6.8e-17  Score=151.85  Aligned_cols=173  Identities=27%  Similarity=0.487  Sum_probs=125.9

Q ss_pred             HhhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q psy16306        123 IQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQ  201 (302)
Q Consensus       123 v~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~  201 (302)
                      +|.||.++|.+ ...++..|.++||+++|||++++++.++.|.+|++++|++||.+||+.++||+++.+++.+.+..++.
T Consensus        47 ~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEt~r~y~g~dG~i~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~lv~  126 (365)
T 2a1h_A           47 GWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIE  126 (365)
T ss_dssp             EECCCEEEESCCEEECTTBHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred             eEECCEEeEcccceeCccchhhhcCceeEeEEEEEecCCCceeecCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            68999999986 47899999999999999999999888888899999999999999999999998899999999999999


Q ss_pred             hcccccccCCCceeeecceeeccccccccccccCCC-----Ccc-ccCCch-hhHHHHHHHHH-HhCCC----------C
Q psy16306        202 IDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVD-----GHI-RMFRPE-MNMDRMNRSAL-RAGLP----------Q  263 (302)
Q Consensus       202 ~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~-----~~~-~if~~~-~h~~RL~~Sa~-~r~~~----------~  263 (302)
                      .|+.|+|.....++|+|+++++++...|+.+...+.     .+. ..+... ....++..+.. .|..+          +
T Consensus       127 ~~~~~~p~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~g~~~~v~l~~~~~~~R~~~~~~~~~Kt~~n  206 (365)
T 2a1h_A          127 VDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGN  206 (365)
T ss_dssp             HTGGGSCCSTTCEEEEEEEEEECCBCCSCSCCSEEEEEEEEEEECCSSSSSSCCCEEEEECTTCCSCCTTSSTTSCBGGG
T ss_pred             hccccCCCCCCceEEEEEEEEecCCccCCCCCCCcEEEEEEEECccccccccccceEEEEccccccCCCCccchhchhhc
Confidence            999999864434789999998887666654321000     000 001000 11233333332 22111          1


Q ss_pred             CCHHH------HHHHHHHHHHH-c-CCccCCCCcccEEEE
Q psy16306        264 FDPEE------MIQCLNRLIQI-D-QEWVPHTTAASLYIR  295 (302)
Q Consensus       264 ~~~~~------l~~~~~e~l~~-n-~~~v~e~~~~n~yir  295 (302)
                      +...-      ..++++|+|.+ | +|+|+|++.+|+|+.
T Consensus       207 y~~~~la~~eA~~~G~de~L~l~d~~G~V~E~~~sNif~v  246 (365)
T 2a1h_A          207 YGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVY  246 (365)
T ss_dssp             TTTHHHHHHHHHHTTCSEEEEEETTTTEEEEETTEEEEEE
T ss_pred             cHHHHHHHHHHHHcCCCeEEEEECCCCeEEEcCceEEEEE
Confidence            21111      13456677888 7 899999999999875

>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*

Probab=99.47  E-value=3e-14  Score=134.60  Aligned_cols=103  Identities=50%  Similarity=0.852  Sum_probs=93.0

Q ss_pred             HHHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q psy16306        199 LIQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLI  277 (302)
Q Consensus       199 ii~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~~~~~~~l~~~~~e~l  277 (302)
                      ..|.||+++|..+ ..++..+.++||+++|||+|+|+..+|.+.+|++++|+.||..|+.++.+|+++.+++.+++.+++
T Consensus        66 ~~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEg~k~y~g~dg~i~~frld~H~~RL~~Sa~~l~~p~~~~e~~~~~i~~lv  145 (386)
T 2coi_A           66 FGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLV  145 (386)
T ss_dssp             TEECCCEEEECCCEEECTTCHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred             cEEECCEEeecccCccCcccchhhcCceeEEEEEEEeCCCCceeecCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            5699999999865 456788899999999999999987777678999999999999999999999888999999999999


Q ss_pred             HHcCCccCCCCcccEEEEEEeeec
Q psy16306        278 QIDQEWVPHTTAASLYIRPTLIGT  301 (302)
Q Consensus       278 ~~n~~~v~e~~~~n~yir~~~~~~  301 (302)
                      .+|..||+++.+.++||||+++|+
T Consensus       146 ~~~~~~vp~~~g~~~yiR~~~~~~  169 (386)
T 2coi_A          146 KLDQEWVPYSTSASLYIRPTFIGT  169 (386)
T ss_dssp             HHTGGGSCSSSSCEEEEEEEEEEC
T ss_pred             HhccccCCCCCCccEEEEEEEEec
Confidence            999889998777899999999976

>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}

Probab=99.40  E-value=1.2e-13  Score=127.87  Aligned_cols=96  Identities=23%  Similarity=0.377  Sum_probs=86.4

Q ss_pred             HHHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q psy16306        199 LIQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  276 (302)
Q Consensus       199 ii~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~e~  276 (302)
                      .+|.||+++|.++ ..++.+++++||+++|||+|+|++++|..++|++++|+.||..|+..+.++ +++.+++.+++.++
T Consensus        30 ~~w~nG~~vp~~~~~i~~~drg~~yGdgvFEtir~~~~~dG~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l  109 (328)
T 3u0g_A           30 KIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDV  109 (328)
T ss_dssp             EEEETTEEEEGGGCEEESSCHHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHH
T ss_pred             EEEECCEEeehHhCccCccchHHhcCceEEEEEEEEECCCCCeeeCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence            5899999999865 467799999999999999999987665458999999999999999999999 88999999999999


Q ss_pred             HHHcCCccCCCCcccEEEEEEeeec
Q psy16306        277 IQIDQEWVPHTTAASLYIRPTLIGT  301 (302)
Q Consensus       277 l~~n~~~v~e~~~~n~yir~~~~~~  301 (302)
                      +++|+       ..++||||+++..
T Consensus       110 v~~n~-------~~~~~iR~~vtrg  127 (328)
T 3u0g_A          110 VRENK-------LESCYLRPIIWIG  127 (328)
T ss_dssp             HHHTT-------CSSEEEEEEEEEC
T ss_pred             HHhcC-------CCCeEEEEEEEec
Confidence            99987       5789999999864

>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*

Probab=99.39  E-value=1.4e-14  Score=132.99  Aligned_cols=166  Identities=20%  Similarity=0.317  Sum_probs=118.0

Q ss_pred             HHhhccccccCC-CCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306        122 LIQIDQEWVPHT-TAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRL  199 (302)
Q Consensus       122 lv~~Ng~~vp~~-~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~i  199 (302)
                      .+|.||.++|.+ ...++..|+++||+++||+++.+++.++. .+|++++|++||.+||+.++++ +++.+++.+.+..+
T Consensus         7 ~~~~nG~~~~~~~~~i~~~d~g~~yG~gvFEtir~~~g~~g~-~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~   85 (308)
T 2eiy_A            7 LIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGP-AIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEV   85 (308)
T ss_dssp             SEEETTEEECGGGCCCCTTCHHHHHCCEEECCEEEECCTTSC-EEETHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHH
T ss_pred             eEEECCEEeEhHHCccCccchHhhhcceEEEEEEEECCCCcc-cccCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            468899999975 58999999999999999999999887666 7999999999999999999999 78999999999999


Q ss_pred             HHhcccccccCCCceeeecceeeccccccccccccCCCCccc----c----CCch--hhHHHHHHHHHHhCCC-CCC---
Q psy16306        200 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIR----M----FRPE--MNMDRMNRSALRAGLP-QFD---  265 (302)
Q Consensus       200 i~~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~----i----f~~~--~h~~RL~~Sa~~r~~~-~~~---  265 (302)
                      +..|+.       .+.++|+.+++++...|..+.........    +    +...  .++.|+..+.+.|..+ ...   
T Consensus        86 ~~~~~~-------~~~~iR~~v~~g~~~~~~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~  158 (308)
T 2eiy_A           86 VRRNGY-------RSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITSSWARFPANVMPGKA  158 (308)
T ss_dssp             HHHTTC-------SSEEEEEEEECCSSCCSSCCGGGCSCEEEEEEEEC--------CCSCEEEEECSSCBCCTTTSCTTS
T ss_pred             HHhCCC-------CcEEEEEEEEecCCccCcCCCCCCCeEEEEEEEEcCccCCcccccCCeEEEEecceecCCCCcCcce
Confidence            888763       26799999977765555443210010000    0    0011  1344555555544332 110   


Q ss_pred             --HH-HH----------HHHHHHHHHHc-CCccCCCCcccEEEE
Q psy16306        266 --PE-EM----------IQCLNRLIQID-QEWVPHTTAASLYIR  295 (302)
Q Consensus       266 --~~-~l----------~~~~~e~l~~n-~~~v~e~~~~n~yir  295 (302)
                        .. .+          .++++|+|..| +|+|+|++.+|+|+.
T Consensus       159 Kt~~ny~~~~la~~~A~~~G~de~l~ld~~G~V~Egs~sNif~v  202 (308)
T 2eiy_A          159 KVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFV  202 (308)
T ss_dssp             CBGGGHHHHHHHHHHHHHTTCSEEEEEBTTSSEEEESSCEEEEE
T ss_pred             ehhhhHHHHHHHHHHHHHcCCCEEEEECCCCeEEEcCceEEEEE
Confidence              11 21          23445667777 799999999999985

>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}

Probab=99.36  E-value=2.5e-14  Score=129.24  Aligned_cols=159  Identities=18%  Similarity=0.191  Sum_probs=108.6

Q ss_pred             HHhhccccccCCCCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHHH
Q psy16306        122 LIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRLI  200 (302)
Q Consensus       122 lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~ii  200 (302)
                      +++.||   +.++..++.+|.++||+++||+++.+++     .+|++++|++||.+||+.++++ +++.+++.+.+..++
T Consensus         5 ~~~~nG---~~~a~i~~~d~g~~yG~gvFEtir~~~g-----~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~   76 (272)
T 3lul_A            5 RVIEDK---GDMTPSFGIDDRIFLGEGLFETIRVNSS-----KPSFAYMHWERLGNSARQLGIPFEISFDDWFEHLIQKI   76 (272)
T ss_dssp             EECCCC---C--CCCCCTTBGGGGTCEEEEEEEEETT-----EESSHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHH
T ss_pred             EEEECC---ccccccCCccchhhcceEeEEEEEEECC-----EeCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            467888   4456899999999999999999999988     7999999999999999999999 679999999999999


Q ss_pred             HhcccccccCCCceeeecceeeccccccccccccCCCCcccc---CCchhhHHHHHHHHHHhC-------CC--CCCHHH
Q psy16306        201 QIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRM---FRPEMNMDRMNRSALRAG-------LP--QFDPEE  268 (302)
Q Consensus       201 ~~ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~i---f~~~~h~~RL~~Sa~~r~-------~~--~~~~~~  268 (302)
                      ..|+.       .+.++|+.++++....|+.+.....+...+   +.......|+..+.+.|.       ++  ++....
T Consensus        77 ~~~~~-------~~~~irl~v~rg~~~~g~~~~~~~~~~~~~~~p~~~~~~~v~l~~~~~~r~~~~~~~~~Kt~nyl~~~  149 (272)
T 3lul_A           77 QKDNL-------YHGGIKAILSGGPASRGLAERGQVSQLIFQTFNYSIQKHPVRLISINWLRDKANPLYQLKSVNYLEAI  149 (272)
T ss_dssp             HHTTC-------SSEEEEEEEECCBCCSSTTCCCSSEEEEEEEECCCCCCSCEEEEEEEEEECTTCGGGGSCBSCCHHHH
T ss_pred             HhcCC-------CCEEEEEEEEecCCccCcCCCCCCCcEEEEEECCCCccccEEEEEEeEEecCCCcccchhhhccHHHH
Confidence            88864       257888888665444444322110000000   110101133434444442       22  221111


Q ss_pred             H------HHHHHHHHHHc-CCccCCCCcccEEEE
Q psy16306        269 M------IQCLNRLIQID-QEWVPHTTAASLYIR  295 (302)
Q Consensus       269 l------~~~~~e~l~~n-~~~v~e~~~~n~yir  295 (302)
                      +      .++++|+|..| +|+|+|++.+|+|+.
T Consensus       150 la~~~A~~~G~de~L~ld~~g~v~E~~~sNif~~  183 (272)
T 3lul_A          150 IAQRQAIAVGADDALFFNTENHVTETTCANLFLI  183 (272)
T ss_dssp             HHHHHHHHTTCSEEEEEETTSBEEEESSCEEEEE
T ss_pred             HHHHHHHHcCCCEEEEECCCCeEEEcCCeEEEEE
Confidence            1      24456677787 799999999999886

>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}

Probab=99.31  E-value=9.9e-13  Score=112.80  Aligned_cols=68  Identities=16%  Similarity=0.119  Sum_probs=61.2

Q ss_pred             hcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHH-HHcCCC-C--CCHHHHHHHHHHHHhhccccccCCCCceeeecc
Q psy16306         67 HYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA-LRAGLP-Q--FDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRP  142 (302)
Q Consensus        67 ~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~-~~l~~~-~--~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp  142 (302)
                      +||+|||||||+|++     ++|++++|++||.+|| +.++|| +  ++.+++.+++. ++..|+.       .+.|+|+
T Consensus         2 ~~g~~vfEt~r~~~g-----~~~~l~~Hl~RL~~Sa~~~l~~~~~~~~~~~~~~~~i~-~~~~~~~-------~~~~iR~   68 (194)
T 3ceb_A            2 MWQFPLFETILIEQG-----QAKNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHT-ALFTHRE-------GLIRCRI   68 (194)
T ss_dssp             CTTCCEEEEEEEETT-----EECSHHHHHHHHHHHHHHHSTTCCCCCCCHHHHHHTCG-GGGSCSS-------SEEEEEE
T ss_pred             CCCCeEEEEEEEECC-----EecCHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-HHhhCCC-------CCEEEEE
Confidence            699999999999965     7999999999999999 999998 3  79999999988 8888764       7899999


Q ss_pred             ccccc
Q psy16306        143 TLIGT  147 (302)
Q Consensus       143 ~~~g~  147 (302)
                      +++++
T Consensus        69 ~~~~g   73 (194)
T 3ceb_A           69 DYNHH   73 (194)
T ss_dssp             EECSS
T ss_pred             EEeCC
Confidence            98876

>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*

Probab=99.26  E-value=2.4e-12  Score=116.50  Aligned_cols=89  Identities=18%  Similarity=0.233  Sum_probs=78.9

Q ss_pred             HHHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q psy16306        199 LIQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  276 (302)
Q Consensus       199 ii~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~e~  276 (302)
                      ++|.||+++|.++ ..++.+++++||+++|||+|+|+     +++|++++|+.||..|+..++++ +++.+++.+++.++
T Consensus         2 ~~~~nG~~~~~~~~~i~~~d~g~~yGdgvFEtir~~~-----g~~f~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~l   76 (277)
T 3daa_A            2 YTLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYN-----GEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL   76 (277)
T ss_dssp             EEEETTEEEEGGGCCBCTTBHHHHTCCEEEEEEEEET-----TEETTHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHH
T ss_pred             EEEECCEEeEhHHCeechhhhHHhcccEEEEEEEEEC-----CEEcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence            3689999999864 56789999999999999999996     48999999999999999999999 88999999999999


Q ss_pred             HHHcCCccCCCCcccEEEEEEee
Q psy16306        277 IQIDQEWVPHTTAASLYIRPTLI  299 (302)
Q Consensus       277 l~~n~~~v~e~~~~n~yir~~~~  299 (302)
                      +++|+       ..+.+||+.++
T Consensus        77 i~~n~-------~~~~~lri~vt   92 (277)
T 3daa_A           77 VEKNE-------LNTGHIYFQVT   92 (277)
T ss_dssp             HHHHT-------CCSEEEEEEEE
T ss_pred             HHhcC-------CCcEEEEEEEE
Confidence            99986       45667777665

>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*

Probab=99.18  E-value=1.4e-11  Score=113.06  Aligned_cols=95  Identities=25%  Similarity=0.417  Sum_probs=82.7

Q ss_pred             HHHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q psy16306        199 LIQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  276 (302)
Q Consensus       199 ii~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~e~  276 (302)
                      ++|.||+++|.++ ..++.+++++||+++|||+|+|+..+|. ++|++++|..||..|+..++++ +++.+++.+.+.++
T Consensus         8 ~~~~ng~~~~~~~~~i~~~d~g~~yG~gvFEtir~~~~~~G~-~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~   86 (309)
T 1iye_A            8 YIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDV   86 (309)
T ss_dssp             EEEETTEEEEGGGCCCCTTCHHHHHCCEEECCEEEECCTTSS-EEETHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred             eEEECCEEEEhHHcccCccchHHhccceeEEEEEEEECCCCc-EEcCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            4789999999764 5677899999999999999999543332 7999999999999999999999 88999999999999


Q ss_pred             HHHcCCccCCCCcccEEEEEEeeec
Q psy16306        277 IQIDQEWVPHTTAASLYIRPTLIGT  301 (302)
Q Consensus       277 l~~n~~~v~e~~~~n~yir~~~~~~  301 (302)
                      +..|.       ..+.|||+++++.
T Consensus        87 ~~~~~-------~~~~~iR~~v~~g  104 (309)
T 1iye_A           87 IRKNN-------LTSAYIRPLIFVG  104 (309)
T ss_dssp             HHHTT-------CSSEEEEEEEEEC
T ss_pred             HHhcC-------CCCEEEEEEEEeC
Confidence            99986       5689999999864

>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}

Probab=99.15  E-value=2.2e-11  Score=112.07  Aligned_cols=90  Identities=16%  Similarity=0.044  Sum_probs=78.9

Q ss_pred             HHHhc---ccc--cccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCCCCCHHHHHHH
Q psy16306        199 LIQID---QEW--VPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQC  272 (302)
Q Consensus       199 ii~~n---g~~--vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~~~~~~~l~~~  272 (302)
                      ++|.|   |++  +|.++ ..++.+++++||+++|||+|+|+     +++|.+++|+.||..|+..++++..+.+++.++
T Consensus        16 ~v~~n~~~G~~~~~~~~~a~i~~~Drg~~yGdgvFEtirv~~-----G~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~l~~~   90 (315)
T 3sno_A           16 ILIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIRD-----GHACNVRRHGERFKASAALLGLPEPILEDWEKA   90 (315)
T ss_dssp             EEEECSTTCCEEEECTTSCCCCTTBTTTTTCCEEEEEEEEET-----TEETTHHHHHHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred             EEEEECCCCeEEEeeHHHCcccccchHhhcCCEeEEEEEEEC-----CEECCHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence            68899   999  99875 56889999999999999999995     489999999999999999999993378899999


Q ss_pred             HHHHHHH----cCCccCCCCcccEEEEEEeee
Q psy16306        273 LNRLIQI----DQEWVPHTTAASLYIRPTLIG  300 (302)
Q Consensus       273 ~~e~l~~----n~~~v~e~~~~n~yir~~~~~  300 (302)
                      +.++++.    |+       ..+.|||++++.
T Consensus        91 i~~~v~~~~~~n~-------~~~~~iRl~vtr  115 (315)
T 3sno_A           91 TQMGIESWYSHPN-------AGEASCTWTLSR  115 (315)
T ss_dssp             HHHHHHHHHTC---------CCCEEEEEEEEC
T ss_pred             HHHHHHhhcccCC-------CCCEEEEEEEEe
Confidence            9999998    44       568999999984

>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}

Probab=99.14  E-value=5.8e-11  Score=103.91  Aligned_cols=70  Identities=20%  Similarity=0.301  Sum_probs=60.7

Q ss_pred             hhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeeccccc
Q psy16306         66 LHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLI  145 (302)
Q Consensus        66 ~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~  145 (302)
                      -.-|+|||||||+|+  +|  ++|++++|++||.+||+.|+|| ++.+++.+++.+++. |+.       .+.|+|++++
T Consensus        12 ~~~g~glFEtir~~~--~G--~~~~l~~Hl~RL~~Sa~~l~~~-~~~~~l~~~i~~~~~-~~~-------~~~~iR~~~~   78 (221)
T 3qqm_A           12 DTADFELIETMRWQP--GT--SFLRFDRHLARLYGSAAELGFA-CDPQRIAEVLSDALD-GAR-------TAMRTRLALA   78 (221)
T ss_dssp             TTSCCEEEEEEEEET--TT--EETTHHHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHT-TCC-------SCEEEEEEEE
T ss_pred             CCCCCEEEEEEEEec--CC--cCcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh-cCC-------CCEEEEEEEE
Confidence            346899999999992  24  8999999999999999999998 689999999999987 543       6789999999


Q ss_pred             ccc
Q psy16306        146 GTD  148 (302)
Q Consensus       146 g~~  148 (302)
                      +++
T Consensus        79 ~~g   81 (221)
T 3qqm_A           79 RNG   81 (221)
T ss_dssp             TTS
T ss_pred             cCC
Confidence            865

>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}

Probab=99.12  E-value=6.5e-13  Score=118.13  Aligned_cols=150  Identities=18%  Similarity=0.156  Sum_probs=104.0

Q ss_pred             HhhccccccCCCCceeeeccccc-ccccccccccccCCCCceEEecccchHHHHHHHHHHcCCC-CCCHHHHHHHHHHHH
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLI-GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLP-QFDPEEMIQCLNRLI  200 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~-g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~-~~~~e~l~~gi~~ii  200 (302)
                      ++.||..+     .++..|+++| |++.||+++.+++     .+|++++|++||.+||+.++++ +++ +++.+.+..++
T Consensus         2 ~~~nG~~~-----~~~~d~g~~y~G~gvFEtir~~~G-----~~~~l~~Hl~RL~~Sa~~l~~~~p~~-~~l~~~i~~~~   70 (246)
T 2zgi_A            2 RLLNGTPL-----ALALPEAFLYHGASVFTTLRAEGG-----RPLWLEEHLARLRRHALALGLSYPGD-EAFLEDLEALL   70 (246)
T ss_dssp             EEETTEEC-----CCSSCHHHHHSCCCEEEEEEEETT-----EETTHHHHHHHHHHHHHHTTCCCCCH-HHHHHHHHHHT
T ss_pred             EEECCccc-----CCCccCcccccCeeEEEEEEEECC-----EeCCHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Confidence            45688732     4788999999 9999999999988     7999999999999999999999 666 88999998887


Q ss_pred             Hhc-ccccccCCCceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHH-----HhCCC--CCCHHHH---
Q psy16306        201 QID-QEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSAL-----RAGLP--QFDPEEM---  269 (302)
Q Consensus       201 ~~n-g~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~-----~r~~~--~~~~~~l---  269 (302)
                      ..| +.       .+.++|+.+++++...|..++..+.+.     ....+.++..+.+     ...++  ++....+   
T Consensus        71 ~~~~~~-------~~~~vR~~v~~g~~~~~~~p~~~~~~~-----~~~~g~~l~~~~~r~~~~~~~~Kt~n~~~~~~a~~  138 (246)
T 2zgi_A           71 RAFPKA-------PCLRLRFTVGEGVRLSEARPYAPLPLS-----LYREGVRVRLTGYRVHPDLARYKTGNYLPYRLALE  138 (246)
T ss_dssp             TSCTTC-------SEEEEEEEEETTEEEEEEEECCCCCTH-----HHHHCBCEEEEEEECCTTTTTSCBSCCHHHHHHHH
T ss_pred             HhcCCC-------CCEEEEEEEECCCCccCcCcCCCCchh-----HhhcCeEEEEecccCCCCCccchhhhhHHHHHHHH
Confidence            765 32       378999999877666666554321110     0011222222222     11233  2211111   


Q ss_pred             ---HHHHHHHHHHc-CCccCCCCcccEEEE
Q psy16306        270 ---IQCLNRLIQID-QEWVPHTTAASLYIR  295 (302)
Q Consensus       270 ---~~~~~e~l~~n-~~~v~e~~~~n~yir  295 (302)
                         .++++|+|..| +|+|+|++.+|+|+.
T Consensus       139 ~A~~~g~de~l~ld~~G~v~Egs~sNif~v  168 (246)
T 2zgi_A          139 EARKEGAFEGLLLDAFGHVVDGSRTSPLLF  168 (246)
T ss_dssp             HHHTTTCSEEEEECTTSCEEEESSSEEEEE
T ss_pred             HHHHcCCCEEEEECCCCCEEEcCCeEEEEE
Confidence               23456677787 799999999999985

>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*

Probab=99.12  E-value=2.5e-12  Score=115.74  Aligned_cols=155  Identities=14%  Similarity=0.167  Sum_probs=103.9

Q ss_pred             HhhccccccCCCCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQI  202 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~  202 (302)
                      ++.||.   .++..++.+|+++||++.||+++.+++     .+|++++|++||.+||+.++++.++.+++.+.+..++..
T Consensus         2 ~~~nG~---~~~~i~~~d~g~~yG~gvfEtir~~~G-----~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~~~~   73 (269)
T 1i2k_A            2 FLINGH---KQESLAVSDRATQFGDGCFTTARVIDG-----KVSLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTLAAE   73 (269)
T ss_dssp             EEETTE---EESCCCTTCHHHHHCCEEEEEEEEETT-----EETTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred             EEECCC---cCCccCccccccccceeEEEEEEEECC-----EEecHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence            466776   234688999999999999999999988     799999999999999999999933899999999888764


Q ss_pred             cccccccCCCceeeecceeeccccccccccccCCCCcc----ccCCc-----hhhHHHHHHHHHHhC-------CC--CC
Q psy16306        203 DQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHI----RMFRP-----EMNMDRMNRSALRAG-------LP--QF  264 (302)
Q Consensus       203 ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~~~~~~~----~if~~-----~~h~~RL~~Sa~~r~-------~~--~~  264 (302)
                      +         .+.++|+.++++....|..+........    .++..     ...+.|+..+..++.       ++  ++
T Consensus        74 ~---------~~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~Kt~n~  144 (269)
T 1i2k_A           74 Q---------QNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSPVRLGRNPHLAGIKHLNR  144 (269)
T ss_dssp             H---------CSEEEEEEEECCSCCSTTCCTTCCCCEEEEEEECCCSHHHHHHHHCEEEEECSCCBCCCTTTTBCCBSCC
T ss_pred             C---------CCeEEEEEEEcCCCCCCCCCccCCCcEEEEEEEECCCcchhhhcCCeEEEEeceecCCCCcccCcchhhh
Confidence            3         1468888887654444543321111111    11111     012334444443332       22  11


Q ss_pred             CHHHH-------HHHHHHHHHHc-CCccCCCCcccEEEE
Q psy16306        265 DPEEM-------IQCLNRLIQID-QEWVPHTTAASLYIR  295 (302)
Q Consensus       265 ~~~~l-------~~~~~e~l~~n-~~~v~e~~~~n~yir  295 (302)
                       .+.+       .++++|+|..| +|+|+|++.+|+|+.
T Consensus       145 -~~~~~a~~~A~~~G~de~l~ld~~G~v~E~s~sNif~v  182 (269)
T 1i2k_A          145 -LEQVLIRSHLEQTNADEALVLDSEGWVTECCAANLFWR  182 (269)
T ss_dssp             -HHHHHHHHHHTTSSCSEEEEEBTTSBEEECSSSEEEEE
T ss_pred             -HHHHHHHHHHHHCCCCEEEEECCCCcEEEcCceEEEEE
Confidence             1222       13455667777 799999999999985

>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}

Probab=98.51  E-value=3.2e-08  Score=89.66  Aligned_cols=85  Identities=18%  Similarity=0.195  Sum_probs=70.7

Q ss_pred             HHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q psy16306        200 IQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLI  277 (302)
Q Consensus       200 i~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~e~l  277 (302)
                      -|.++++++... ..++.++++  |+++|||+|+|+     +++|.+++|..||..|+..++++ +++.+++.+.+.+++
T Consensus        17 ~~~~~~~~~~~~~~i~~~d~g~--G~gvFEtir~~~-----G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~l~~~i~~~~   89 (285)
T 3csw_A           17 WRGKFRRADEISLDFSLFEKSL--QGAVYETLRTYS-----RAPFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGA   89 (285)
T ss_dssp             ETTEEEESSEEEEEHHHHHHHT--TCCEEEEEEEET-----TEETTHHHHHHHHHHHHHTTTCCCSSCHHHHHHHHHHHH
T ss_pred             EccCceEcccccCEeCCccccc--ceeeEEEEEEEC-----CEECCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            356778887543 456677777  999999999995     48999999999999999999999 889999999999998


Q ss_pred             HHcCCccCCCCcccEEEEEEee
Q psy16306        278 QIDQEWVPHTTAASLYIRPTLI  299 (302)
Q Consensus       278 ~~n~~~v~e~~~~n~yir~~~~  299 (302)
                      ..|.        .+.|||+++.
T Consensus        90 ~~~~--------~~~~iR~~v~  103 (285)
T 3csw_A           90 DEFK--------QEVRIKVYLF  103 (285)
T ss_dssp             TTCS--------SCEEEEEEEC
T ss_pred             HhhC--------CCeEEEEEEE
Confidence            8763        2579999874

>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}

Probab=98.29  E-value=3e-07  Score=78.43  Aligned_cols=67  Identities=13%  Similarity=0.022  Sum_probs=57.0

Q ss_pred             eeccccccccccccCCCCccccCCchhhHHHHHHHH-HHhCCC-C--CCHHHHHHHHHHHHHHcCCccCCCCcccEEEEE
Q psy16306        221 LIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA-LRAGLP-Q--FDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRP  296 (302)
Q Consensus       221 l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa-~~r~~~-~--~~~~~l~~~~~e~l~~n~~~v~e~~~~n~yir~  296 (302)
                      +||.++|||+|+++     +++|.+++|..||..|+ ..++++ +  ++.+++.+.+. ++.+|.       ..++|||+
T Consensus         2 ~~g~~vfEt~r~~~-----g~~~~l~~Hl~RL~~Sa~~~l~~~~~~~~~~~~~~~~i~-~~~~~~-------~~~~~iR~   68 (194)
T 3ceb_A            2 MWQFPLFETILIEQ-----GQAKNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHT-ALFTHR-------EGLIRCRI   68 (194)
T ss_dssp             CTTCCEEEEEEEET-----TEECSHHHHHHHHHHHHHHHSTTCCCCCCCHHHHHHTCG-GGGSCS-------SSEEEEEE
T ss_pred             CCCCeEEEEEEEEC-----CEecCHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-HHhhCC-------CCCEEEEE
Confidence            58999999999995     47999999999999999 999998 3  67888887777 777765       46899999


Q ss_pred             Eeee
Q psy16306        297 TLIG  300 (302)
Q Consensus       297 ~~~~  300 (302)
                      +++.
T Consensus        69 ~~~~   72 (194)
T 3ceb_A           69 DYNH   72 (194)
T ss_dssp             EECS
T ss_pred             EEeC
Confidence            9874

>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}

Probab=98.10  E-value=3.7e-06  Score=73.20  Aligned_cols=66  Identities=20%  Similarity=0.324  Sum_probs=56.1

Q ss_pred             eccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCccCCCCcccEEEEEEeee
Q psy16306        222 IGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIG  300 (302)
Q Consensus       222 ~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~~~~~~~l~~~~~e~l~~n~~~v~e~~~~n~yir~~~~~  300 (302)
                      -|.++|||+|+++  +  +++|.+++|.+||..|+..++++ ++.+++.+.+.+++. |.       ..+.|||++++.
T Consensus        14 ~g~glFEtir~~~--~--G~~~~l~~Hl~RL~~Sa~~l~~~-~~~~~l~~~i~~~~~-~~-------~~~~~iR~~~~~   79 (221)
T 3qqm_A           14 ADFELIETMRWQP--G--TSFLRFDRHLARLYGSAAELGFA-CDPQRIAEVLSDALD-GA-------RTAMRTRLALAR   79 (221)
T ss_dssp             SCCEEEEEEEEET--T--TEETTHHHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHT-TC-------CSCEEEEEEEET
T ss_pred             CCCEEEEEEEEec--C--CcCcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh-cC-------CCCEEEEEEEEc
Confidence            5779999999993  1  48899999999999999999997 467899999999887 53       457899999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d2a1ha1	363	e.17.1.1 (A:3-365) Branched-chain aminoacid aminot	2e-38
d2a1ha1	363	e.17.1.1 (A:3-365) Branched-chain aminoacid aminot	1e-16
d2a1ha1	363	e.17.1.1 (A:3-365) Branched-chain aminoacid aminot	2e-16
d1iyea_	304	e.17.1.1 (A:) Branched-chain aminoacid aminotransf	2e-13
d1iyea_	304	e.17.1.1 (A:) Branched-chain aminoacid aminotransf	1e-09
d1daaa_	277	e.17.1.1 (A:) D-aminoacid aminotransferase {Bacill	2e-06
d1daaa_	277	e.17.1.1 (A:) D-aminoacid aminotransferase {Bacill	1e-04
d1daaa_	277	e.17.1.1 (A:) D-aminoacid aminotransferase {Bacill	2e-04
d1i2ka_	269	e.17.1.1 (A:) Aminodeoxychorismate lyase {Escheric	9e-05
d1i2ka_	269	e.17.1.1 (A:) Aminodeoxychorismate lyase {Escheric	0.002
d1i2ka_	269	e.17.1.1 (A:) Aminodeoxychorismate lyase {Escheric	0.003

>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 363

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score =  136 bits (344), Expect = 2e-38
 Identities = 71/145 (48%), Positives = 101/145 (69%), Gaps = 3/145 (2%)

Query: 4   EIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAA 63
           ++ +++      +P P    L FG  FTDHML +E+N+   GW  PR+ P + LTLHPA+
Sbjct: 7   DLQLEMTQKPHKKPGPG-EPLVFGKTFTDHMLMVEWND--KGWGQPRIQPFQNLTLHPAS 63

Query: 64  KVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLI 123
             LHYS++LFEGMKA++G D  +R+FRP +NMDRM RSA+R  LP FD  E+++C+ RLI
Sbjct: 64  SSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLI 123

Query: 124 QIDQEWVPHTTAASLYIRPTLIGTD 148
           ++D++WVP     SLY+RP LIG +
Sbjct: 124 EVDKDWVPDAAGTSLYVRPVLIGNE 148

>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 363

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 1e-16
 Identities = 43/80 (53%), Positives = 59/80 (73%)

Query: 223 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQE 282
              LFEGMKA++G D  +R+FRP +NMDRM RSA+R  LP FD  E+++C+ RLI++D++
Sbjct: 69  SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKD 128

Query: 283 WVPHTTAASLYIRPTLIGTD 302
           WVP     SLY+RP LIG +
Sbjct: 129 WVPDAAGTSLYVRPVLIGNE 148

>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 363

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 2e-16
 Identities = 42/80 (52%), Positives = 59/80 (73%)

Query: 146 GTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQIDQE 205
              LFEGMKA++G D  +R+FRP +NMDRM +SA+R  LP FD  E+++C+ RLI++D++
Sbjct: 69  SLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKD 128

Query: 206 WVPHTTAASLYIRPTLIGTD 225
           WVP     SLY+RP LIG +
Sbjct: 129 WVPDAAGTSLYVRPVLIGNE 148

>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Length = 304

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]

 Score = 67.3 bits (163), Expect = 2e-13
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 46  WQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRA 105
           W    +   +   +H  +  LHY   +FEG++ Y    G + +FR   +M R++ SA   
Sbjct: 6   WFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPV-VFRHREHMQRLHDSA--- 61

Query: 106 GLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRM 165
              +     + Q ++ L++  ++ +      S YIRP +   D+  G+    G    + +
Sbjct: 62  ---KIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVII 118

Query: 166 FRPEMNM 172
                  
Sbjct: 119 AAFPWGA 125

>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Length = 304

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]

 Score = 56.1 bits (134), Expect = 1e-09
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 200 IQIDQEWVPHTTAA-SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALR 258
           I  + E V    A   +       GT +FEG++ Y    G + +FR   +M R++ SA  
Sbjct: 5   IWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPV-VFRHREHMQRLHDSA-- 61

Query: 259 AGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTD 302
               +     + Q ++ L++  ++ +      S YIRP +   D
Sbjct: 62  ----KIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLIFVGD 101

>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Length = 277

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: D-aminoacid aminotransferase
species: Bacillus sp., strain YM-1 [TaxId: 1409]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 53  PLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA-LRAGLPQFD 111
             + + +    +   +   ++E +K Y G      MF    ++DR+  SA        + 
Sbjct: 11  KDEEVKIDKEDRGYQFGDGVYEVVKVYNG-----EMFTVNEHIDRLYASAEKIRITIPYT 65

Query: 112 PEEMIQCLNRLIQIDQEWVPH 132
            ++  Q L+ L++ ++    H
Sbjct: 66  KDKFHQLLHELVEKNELNTGH 86

>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Length = 277

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: D-aminoacid aminotransferase
species: Bacillus sp., strain YM-1 [TaxId: 1409]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 205 EWVPHTTAA-SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSA-LRAGLP 262
           + V           R    G  ++E +K Y G      MF    ++DR+  SA       
Sbjct: 8   QIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNG-----EMFTVNEHIDRLYASAEKIRITI 62

Query: 263 QFDPEEMIQCLNRLIQIDQEWVPH 286
            +  ++  Q L+ L++ ++    H
Sbjct: 63  PYTKDKFHQLLHELVEKNELNTGH 86

>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Length = 277

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: D-aminoacid aminotransferase
species: Bacillus sp., strain YM-1 [TaxId: 1409]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 128 EWVPHTTAA-SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSA-LRAGLP 185
           + V           R    G  ++E +K Y G      MF    ++DR+  SA       
Sbjct: 8   QIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNG-----EMFTVNEHIDRLYASAEKIRITI 62

Query: 186 QFDPEEMIQCLNRLIQIDQEWVPH 209
            +  ++  Q L+ L++ ++    H
Sbjct: 63  PYTKDKFHQLLHELVEKNELNTGH 86

>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Length = 269

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Aminodeoxychorismate lyase
species: Escherichia coli [TaxId: 562]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 8/72 (11%), Positives = 23/72 (31%), Gaps = 5/72 (6%)

Query: 58  TLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQ 117
           +L  + +   +    F   +   G     ++     ++ R+  +  R  +      ++ Q
Sbjct: 11  SLAVSDRATQFGDGCFTTARVIDG-----KVSLLSAHIQRLQDACQRLMISCDFWPQLEQ 65

Query: 118 CLNRLIQIDQEW 129
            +  L    Q  
Sbjct: 66  EMKTLAAEQQNG 77

>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Length = 269

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Aminodeoxychorismate lyase
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 214 SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCL 273
           ++  R T  G   F   +   G     ++     ++ R+  +  R  +      ++ Q +
Sbjct: 13  AVSDRATQFGDGCFTTARVIDG-----KVSLLSAHIQRLQDACQRLMISCDFWPQLEQEM 67

Query: 274 NRLIQIDQEW 283
             L    Q  
Sbjct: 68  KTLAAEQQNG 77

>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Length = 269

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Aminodeoxychorismate lyase
species: Escherichia coli [TaxId: 562]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 137 SLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCL 196
           ++  R T  G   F   +   G     ++     ++ R+  +  R  +      ++ Q +
Sbjct: 13  AVSDRATQFGDGCFTTARVIDG-----KVSLLSAHIQRLQDACQRLMISCDFWPQLEQEM 67

Query: 197 NRLIQIDQEW 206
             L    Q  
Sbjct: 68  KTLAAEQQNG 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d2a1ha1	363	Branched-chain aminoacid aminotransferase {Human (	100.0
d1iyea_	304	Branched-chain aminoacid aminotransferase {Escheri	99.91
d1daaa_	277	D-aminoacid aminotransferase {Bacillus sp., strain	99.83
d1i2ka_	269	Aminodeoxychorismate lyase {Escherichia coli [TaxI	99.68
d2a1ha1	363	Branched-chain aminoacid aminotransferase {Human (	99.55
d1iyea_	304	Branched-chain aminoacid aminotransferase {Escheri	99.26
d1daaa_	277	D-aminoacid aminotransferase {Bacillus sp., strain	99.1
d1i2ka_	269	Aminodeoxychorismate lyase {Escherichia coli [TaxI	98.91

>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=4.8e-38  Score=294.03  Aligned_cols=155  Identities=47%  Similarity=0.937  Sum_probs=146.0

Q ss_pred             CCCccEEEecCCCCCCCCCCcCCCCcccccCCceEEEEEeCCCcceeCCeeccCCCcccCccchhhhcCCeeeeeeeeee
Q psy16306          1 QFQEIHVQLCSPEQLQPKPEVSQLKFGTVFTDHMLQIEFNEQLGGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYR   80 (302)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~m~~~~~~~~~~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~   80 (302)
                      ++++|+++++.++..+|.|. ++|+||++|||||++|+|++  +.|.||+++|.++++|||+|+|||||||||||||+|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~d~m~~~~~~~--~~W~ng~ivp~~~~~isp~~~~l~YG~gvFEgiR~y~   80 (363)
T d2a1ha1           4 KAADLQLEMTQKPHKKPGPG-EPLVFGKTFTDHMLMVEWND--KGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFK   80 (363)
T ss_dssp             CGGGCEECCCSSCCCCCCTT-SCCCTTCSCCSEEEEEEEET--TEECCCEEEESCCEEECTTBHHHHSCCEEECCEEEEE
T ss_pred             cccceEEEEcCCCCCCCCCc-ccCCCCCcccceEEEEEecC--CeeeCCEEeEcccceeCcchhhccccceeeeeEEEEE
Confidence            57899999999999888775 99999999999999999998  5999999999999999999999999999999999999


Q ss_pred             cCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhccccccCCCCceeeecccccccccccccccccC
Q psy16306         81 GVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRG  158 (302)
Q Consensus        81 ~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~  158 (302)
                      +.+|++++|||++|++||++||++|+||+++.+++.+++.++|..|..++|.....++|+||++++++...++.+...
T Consensus        81 ~~~g~i~lFrld~Hl~RL~~Sa~~l~~~~~~~~~~~~~i~~~v~~n~~~v~~~~~~~~yiR~~v~~~~~~~~~~~~~~  158 (363)
T d2a1ha1          81 GKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRR  158 (363)
T ss_dssp             CTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCCSE
T ss_pred             CCCCCEEEEccHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhhccccccccEEEEEeeccCCccccccCCcc
Confidence            999999999999999999999999999989999999999999999999999888899999999999988877766543

>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=5.9e-26  Score=206.18  Aligned_cols=115  Identities=23%  Similarity=0.416  Sum_probs=102.1

Q ss_pred             cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306         44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  122 (302)
Q Consensus        44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l  122 (302)
                      ++|+||+++|.++++||+.|+||+|||||||+||+|++.+|++ +|++++|++||.+||+.|+|+ +.+.+++.++++++
T Consensus         4 ~i~~nG~~~~~~~a~i~~~d~g~~yGdgvFEt~r~~~g~~~~~-lf~l~~Hl~RL~~Sa~~l~i~~~~~~~~~~~~~~~~   82 (304)
T d1iyea_           4 YIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPV-VFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDV   82 (304)
T ss_dssp             EEEETTEEEEGGGCCCCTTCHHHHHCCEEECCEEEECCTTSSE-EETHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred             EEEECCEEeehHHCccCccccHHhhceeeeecEEEEECCCCCe-ecCHHHHHHHHHHhcccccCCCcchhhHHHHHHHHH
Confidence            7999999999999999999999999999999999999876654 899999999999999999999 89999999999999


Q ss_pred             HhhccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF  166 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f  166 (302)
                      +..|+.       .+.++|..+++++...|..+.....+.+.+.
T Consensus        83 v~~n~~-------~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~  119 (304)
T d1iyea_          83 IRKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIA  119 (304)
T ss_dssp             HHHTTC-------SSEEEEEEEEECSSCSSSSCCTTCCEEEEEE
T ss_pred             HHhccc-------ccceEEEEeeecccccccCCccccccceeec
Confidence            999986       6789999988888777777665555544443

>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]}

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: D-aminoacid aminotransferase
species: Bacillus sp., strain YM-1 [TaxId: 1409]

Probab=99.83  E-value=6.2e-21  Score=170.08  Aligned_cols=107  Identities=13%  Similarity=0.156  Sum_probs=93.8

Q ss_pred             cceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Q psy16306         44 GGWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  122 (302)
Q Consensus        44 ~~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~-~~~~~~l~~~~~~l  122 (302)
                      ++|+||+|+|.++++|++.|+||+||||||||||++++     ++|++++|++||.+||+.|+|+ +++.+++..++.++
T Consensus         2 ~~~~ng~~v~~~~~~i~~~d~g~~~GdgvFEt~r~~~g-----~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~~~~~~   76 (277)
T d1daaa_           2 YTLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNG-----EMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL   76 (277)
T ss_dssp             EEEETTEEEEGGGCCBCTTBHHHHHCCEEEEEEEEETT-----EESSHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHH
T ss_pred             EEEECCEEeEHHHCccCCcchHhhhcceeeeeEEEECC-----EECChHHHHHHHHHhhhhhhhcccchHHHHHHHHHHH
Confidence            68999999999999999999999999999999999976     8999999999999999999999 89999999999999


Q ss_pred             HhhccccccCCCCceeeecccccccccccccccccCCCCc
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGH  162 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~  162 (302)
                      +..|+.       ...++|...+++....+...+......
T Consensus        77 ~~~n~~-------~~~~ir~~~~~~~~~~~~~~~~~~~~~  109 (277)
T d1daaa_          77 VEKNEL-------NTGHIYFQVTRGTSPRAHQFPENTVKP  109 (277)
T ss_dssp             HHHHTC-------CSEEEEEEEECCBCSSCSSCCSSCCCC
T ss_pred             HHhccc-------ccceEEeeecccCCcccccCccccccc
Confidence            999986       566788877776666665555444333

>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Aminodeoxychorismate lyase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=3.7e-17  Score=144.86  Aligned_cols=104  Identities=9%  Similarity=0.001  Sum_probs=83.2

Q ss_pred             ceeCCeeccCCCcccCccchhhhcCCeeeeeeeeeecCCCceeecCcchhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q psy16306         45 GWQAPRVSPLKYLTLHPAAKVLHYSVELFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQ  124 (302)
Q Consensus        45 ~w~~g~~~~~~~~~i~~~~~~~~yG~~vfEg~r~y~~~~g~~~~Fr~~~H~~Rl~~S~~~l~~~~~~~~~l~~~~~~lv~  124 (302)
                      .|+||+    ++++||+.|+||+||||||||||++++     ++|++++|++||.+||+.|+|+....+++.+.+..++.
T Consensus         2 ~~~NG~----~~a~i~~~drg~~~G~gvFEt~r~~~g-----~i~~l~~Hl~RL~~Sa~~l~i~~~~~~~~~~~i~~~~~   72 (269)
T d1i2ka_           2 FLINGH----KQESLAVSDRATQFGDGCFTTARVIDG-----KVSLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTLAA   72 (269)
T ss_dssp             EEETTE----EESCCCTTCHHHHHCCEEEEEEEEETT-----EETTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred             EEECCc----ccceeCCCChHHHhhhhheeeEEEECC-----EECCHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHhh
Confidence            599996    678999999999999999999999965     89999999999999999999994345667777776665


Q ss_pred             hccccccCCCCceeeecccccccccccccccccCCCCceEEe
Q psy16306        125 IDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMF  166 (302)
Q Consensus       125 ~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f  166 (302)
                      .+         .+.++|..++++....+..+.....+++++.
T Consensus        73 ~~---------~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~  105 (269)
T d1i2ka_          73 EQ---------QNGVLKVVISRGSGGRGYSTLNSGPATRILS  105 (269)
T ss_dssp             HH---------CSEEEEEEEECCSCCSTTCCTTCCCCEEEEE
T ss_pred             cc---------ccceEEEeeecCCCccccccccccccceeEE
Confidence            44         3468999999887777766665544444433

>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.55  E-value=1.5e-15  Score=140.39  Aligned_cols=102  Identities=43%  Similarity=0.775  Sum_probs=93.4

Q ss_pred             HHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q psy16306        200 IQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLPQFDPEEMIQCLNRLIQ  278 (302)
Q Consensus       200 i~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~~~~~~~l~~~~~e~l~  278 (302)
                      .|.||+++|.++ ..++..++++||+++|||+|+|++.++.+.+|++++|++||..|+.++.+++++.+++.+++.++|+
T Consensus        45 ~W~ng~ivp~~~~~isp~~~~l~YG~gvFEgiR~y~~~~g~i~lFrld~Hl~RL~~Sa~~l~~~~~~~~~~~~~i~~~v~  124 (363)
T d2a1ha1          45 GWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIE  124 (363)
T ss_dssp             EECCCEEEESCCEEECTTBHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred             eeeCCEEeEcccceeCcchhhccccceeeeeEEEEECCCCCEEEEccHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Confidence            589999999876 4677999999999999999999877776789999999999999999999997788999999999999


Q ss_pred             HcCCccCCCCcccEEEEEEeeec
Q psy16306        279 IDQEWVPHTTAASLYIRPTLIGT  301 (302)
Q Consensus       279 ~n~~~v~e~~~~n~yir~~~~~~  301 (302)
                      .|..+|+...+.++||||++++.
T Consensus       125 ~n~~~v~~~~~~~~yiR~~v~~~  147 (363)
T d2a1ha1         125 VDKDWVPDAAGTSLYVRPVLIGN  147 (363)
T ss_dssp             HTGGGSCCSTTCEEEEEEEEEEC
T ss_pred             HHHhhccccccccEEEEEeeccC
Confidence            99889998888999999999875

>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=1.2e-12  Score=117.38  Aligned_cols=95  Identities=25%  Similarity=0.412  Sum_probs=82.9

Q ss_pred             HHHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q psy16306        199 LIQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRL  276 (302)
Q Consensus       199 ii~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~e~  276 (302)
                      ++|.||+++|.++ ..++.+++++||+++||++|+|+...+ ..+|++++|+.||..|+..++++ +.+.+++.+++.++
T Consensus         4 ~i~~nG~~~~~~~a~i~~~d~g~~yGdgvFEt~r~~~g~~~-~~lf~l~~Hl~RL~~Sa~~l~i~~~~~~~~~~~~~~~~   82 (304)
T d1iyea_           4 YIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKG-PVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDV   82 (304)
T ss_dssp             EEEETTEEEEGGGCCCCTTCHHHHHCCEEECCEEEECCTTS-SEEETHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred             EEEECCEEeehHHCccCccccHHhhceeeeecEEEEECCCC-CeecCHHHHHHHHHHhcccccCCCcchhhHHHHHHHHH
Confidence            5799999999865 568899999999999999999975443 24799999999999999999999 88889998999999


Q ss_pred             HHHcCCccCCCCcccEEEEEEeeec
Q psy16306        277 IQIDQEWVPHTTAASLYIRPTLIGT  301 (302)
Q Consensus       277 l~~n~~~v~e~~~~n~yir~~~~~~  301 (302)
                      +.+|.       ..+.+||+.++..
T Consensus        83 v~~n~-------~~~~~vr~~~~~~  100 (304)
T d1iyea_          83 IRKNN-------LTSAYIRPLIFVG  100 (304)
T ss_dssp             HHHTT-------CSSEEEEEEEEEC
T ss_pred             HHhcc-------cccceEEEEeeec
Confidence            99997       6788999887654

>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]}

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: D-aminoacid aminotransferase
species: Bacillus sp., strain YM-1 [TaxId: 1409]

Probab=99.10  E-value=1.8e-11  Score=107.80  Aligned_cols=89  Identities=18%  Similarity=0.230  Sum_probs=79.1

Q ss_pred             HHhcccccccCC-CceeeecceeeccccccccccccCCCCccccCCchhhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q psy16306        200 IQIDQEWVPHTT-AASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNRSALRAGLP-QFDPEEMIQCLNRLI  277 (302)
Q Consensus       200 i~~ng~~vp~~~-~~s~ylr~~l~g~~~feG~r~~~~~~~~~~if~~~~h~~RL~~Sa~~r~~~-~~~~~~l~~~~~e~l  277 (302)
                      +|.||+++|.++ ..++.+++++||+++|||+|+++     +++|++++|++||..|+..++++ +++.+++...+.+++
T Consensus         3 ~~~ng~~v~~~~~~i~~~d~g~~~GdgvFEt~r~~~-----g~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~~~~~~~~~~   77 (277)
T d1daaa_           3 TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYN-----GEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELV   77 (277)
T ss_dssp             EEETTEEEEGGGCCBCTTBHHHHHCCEEEEEEEEET-----TEESSHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH
T ss_pred             EEECCEEeEHHHCccCCcchHhhhcceeeeeEEEEC-----CEECChHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHH
Confidence            468999999865 56789999999999999999995     48999999999999999999999 889999999999999


Q ss_pred             HHcCCccCCCCcccEEEEEEeee
Q psy16306        278 QIDQEWVPHTTAASLYIRPTLIG  300 (302)
Q Consensus       278 ~~n~~~v~e~~~~n~yir~~~~~  300 (302)
                      .+|+       ..+.+||+.++.
T Consensus        78 ~~n~-------~~~~~ir~~~~~   93 (277)
T d1daaa_          78 EKNE-------LNTGHIYFQVTR   93 (277)
T ss_dssp             HHHT-------CCSEEEEEEEEC
T ss_pred             Hhcc-------cccceEEeeecc
Confidence            9997       566788887764

>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Aminodeoxychorismate lyase
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=9.2e-12  Score=109.48  Aligned_cols=95  Identities=12%  Similarity=0.098  Sum_probs=72.1

Q ss_pred             HhhccccccCCCCceeeecccccccccccccccccCCCCceEEecccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Q psy16306        123 IQIDQEWVPHTTAASLYIRPTLIGTDLFEGMKAYRGVDGHIRMFRPEMNMDRMNQSALRAGLPQFDPEEMIQCLNRLIQI  202 (302)
Q Consensus       123 v~~Ng~~vp~~~~~s~yirp~~~g~~~~~g~~~~~~~~~~i~~f~~~~h~~Rl~~s~~~l~~~~~~~e~l~~gi~~ii~~  202 (302)
                      ++.||.   .++..++.+|+++||+++||+++..++     .+|++++|++||.+||+.++++.+..+++.+.+..++..
T Consensus         2 ~~~NG~---~~a~i~~~drg~~~G~gvFEt~r~~~g-----~i~~l~~Hl~RL~~Sa~~l~i~~~~~~~~~~~i~~~~~~   73 (269)
T d1i2ka_           2 FLINGH---KQESLAVSDRATQFGDGCFTTARVIDG-----KVSLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTLAAE   73 (269)
T ss_dssp             EEETTE---EESCCCTTCHHHHHCCEEEEEEEEETT-----EETTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred             EEECCc---ccceeCCCChHHHhhhhheeeEEEECC-----EECCHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHhhc
Confidence            356885   335689999999999999999999988     799999999999999999999943455666666655543


Q ss_pred             cccccccCCCceeeecceeecccccccccccc
Q psy16306        203 DQEWVPHTTAASLYIRPTLIGTDLFEGMKAYR  234 (302)
Q Consensus       203 ng~~vp~~~~~s~ylr~~l~g~~~feG~r~~~  234 (302)
                      +         ...++|..++++....+.....
T Consensus        74 ~---------~~~~iri~v~~g~~~~~~~~~~   96 (269)
T d1i2ka_          74 Q---------QNGVLKVVISRGSGGRGYSTLN   96 (269)
T ss_dssp             H---------CSEEEEEEEECCSCCSTTCCTT
T ss_pred             c---------ccceEEEeeecCCCcccccccc
Confidence            2         1457777776665555555443