Psyllid ID: psy16314

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850----
MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLLLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLAQCPIQ
ccccccccccEEEcccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHEEcccccEEEccccccccccccccccccHHccccccHHHHHHHHcccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccEEEEEEEEEHHccccccccccccccccccccccHHHHHHHHcccccccHHHcHHHHHHHHHHHHcccccccccccccccccccEEEEEHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccccccccccccccccccEEcccEEEEEEEEEccEEEEEEccccEEEEEEccccHHHccccccccccEEEccccEEEEEcEEEEEEEEEEEEcccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
ccEEEEccccEEEccccccccccccHHEEcccccccccEEccccccccccccccEEcccHHHHEcccccccHHcccccccccHHHHHccccccccHccHcHEEEEEEcccccHHHcEEEEcccHEEEcccccccHHcccccccccHHHHHHcHHHHHHHHHcccEEEccccccccccccEHEEccccccccccccccccccccccccEEEcccHHHHHcccccccHHHccccccccHHHHHccccEEcccccccHHHHHHHHHHHHHHcHHHHccccHccEEEEEEcccHHHHHHHcccccEEEccccccccccHHHcccccccccccEEEEcccccccccccccccccccEEEEEEHEEEEEcccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccEEEcccccccccEEcccccEEEEEEEEcccEEEEEcccccEEEEEccccEEEcccccccccEEEEEcccEEEEEccccccccHHHHHHHHHHHHHHEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
mdffmkkkqhdyvhsscvipsddptlLFANagmnqykpiflgtvdpnsdmAKLVRAVNTQKCiraggkhndlddvgkdvYHHTFFEMlgnwsfgdyfkykpiflgtvdpnsdmAKLVRAVNTQKCiraggkhndlddvgkdvYHHTFFEmlgnwsfgdyfkkqhdyvhsscvipsddptlLFANagmnqykpiflgtvdpnsdmAKLVRAVNTQKCiraggkhndlddvgkdvyHHTFFeilpeshiipgsmkdnfwemgetgpcgpcselhydrigggrnaadlvnqddpaykadllpskltrleNQRSMKDnfwemgetgpcgpcselhydrigggrnaadlvnqddpdvLEIWNLVFIQYnretdgslkplpkkhidcgmgFERLVSVIQdkrsnydtdvFVPLFEAiqkgtgappyqgrvgeedkEGIDMAYRVLADHARTLTIALadggrpdntgrglkplpkkhidcgmgFERLVSIIQdkrsnydtdvfgtgappyqgrvgeedkEGIDMAYRVLADHARTLTIALadggrpdntgrgvgeedkeGIDMAYRVLADHARTLTIALadggrpdntgrgYVLRRILRRAVRYGteklgakprlFSSLVNTVVDLLLLsqgkgatiedtigldihsitdlqtrgvpptddspkyrytptqpdtadgayefepcegtvvglrynkqfvdsvssgteagilldksnfyaeqggqiydegfmigvnDELEVCTWAWELLTTvykipadrlyvtyfgghepaglepdlDYVLRRILRRAVRYGteklgakprlFSSLVNTVVDLLgdtfpeltkdpqsIVDIIDEEEEQFLKTLSRGRSLlnrneshlaqcpiq
mdffmkkkqhdyvhsscvipSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCiraggkhndlddVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCiraggkhndlddVGKDVYHHTFFEMLGNWSFGDYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCiraggkhndlddvgKDVYHHTFFEilpeshiipGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKAdllpskltrleNQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNretdgslkplpkKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEaiqkgtgappyqgrvGEEDKEGIDMAYRVLADHARTLTialadggrpdntgrglkplpkkhidcgMGFERLVSIIQDKRsnydtdvfgtgappyqgrvgEEDKEGIDMAYRVLADHARTLTialadggrpdntgrgvgeedkeGIDMAYRVLADHARTLTialadggrpdntgrgyvLRRILRRAVRYGteklgakprlfssLVNTVVDLLLLSQGKGATIedtigldihsitdlqtrgvpptddspkyrYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGhepaglepdldYVLRRILRRAVRYgteklgakprlfssLVNTVVDLLGdtfpeltkdpQSIVDIIDEEEEQFLKTLsrgrsllnrneshlaqcpiq
MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLLLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLAQCPIQ
**********DYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLV***************************NFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGA************EGIDMAYRVLADHARTLTIALADG************LPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQ********EGIDMAYRVLADHARTLTIALAD*****************GIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLLLSQGKGATIEDTIGLDIHSITDLQ************************GAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIID******************************
MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVV*************EDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNE**L******
*************HSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLLLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLAQCPIQ
MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLLLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLA*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLLLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLAQCPIQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query854 2.2.26 [Sep-21-2011]
Q9VLM8 966 Alanine--tRNA ligase, cyt yes N/A 0.340 0.301 0.677 1e-118
P50475 968 Alanine--tRNA ligase, cyt yes N/A 0.337 0.297 0.660 1e-114
P49588 968 Alanine--tRNA ligase, cyt yes N/A 0.338 0.298 0.659 1e-114
Q8BGQ7 968 Alanine--tRNA ligase, cyt yes N/A 0.337 0.297 0.648 1e-113
Q5RC02 968 Alanine--tRNA ligase, cyt yes N/A 0.341 0.301 0.656 1e-112
Q8CFX8 968 Alanine--tRNA ligase, cyt N/A N/A 0.337 0.297 0.648 1e-112
Q5A8K2 969 Alanine--tRNA ligase OS=C N/A N/A 0.598 0.527 0.432 1e-111
P21894 967 Alanine--tRNA ligase, cyt N/A N/A 0.334 0.295 0.628 1e-110
O01541 968 Alanine--tRNA ligase, cyt yes N/A 0.347 0.306 0.626 1e-109
P40825 983 Alanine--tRNA ligase, mit yes N/A 0.353 0.307 0.634 1e-104
>sp|Q9VLM8|SYAC_DROME Alanine--tRNA ligase, cytoplasmic OS=Drosophila melanogaster GN=Aats-ala PE=2 SV=1 Back     alignment and function desciption
 Score =  426 bits (1096), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/326 (67%), Positives = 244/326 (74%), Gaps = 35/326 (10%)

Query: 155 SFGDYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
           ++ D+FK+Q H YVHSS  IP DDPTLLFANAGMNQ+KPIFLGT DPNS+M+K VR  NT
Sbjct: 12  AYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRVANT 71

Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF--------WEMGETGPC 265
           QKCIRAGGKHNDLDDVGKDVYHHTFFE+L        S  D F        WE       
Sbjct: 72  QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGN-----WSFGDYFKKEICSWAWEFLTQRLA 126

Query: 266 GPCSELHYDRIGGGRNAADLVNQD--------DPAYKAD-LLPSKLTRLENQRSMKDNFW 316
            P   L+    GG  +AA  +  D        D   K + +LP          SMKDNFW
Sbjct: 127 LPKDRLYVTYFGG--DAASGLEPDLECKQMWLDLGLKPEHILPG---------SMKDNFW 175

Query: 317 EMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPK 376
           EMGETGPCGPCSELH+DRI GGR+  +LVN DDPDVLEIWNLVFIQYNRE+DGSLK LPK
Sbjct: 176 EMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPK 234

Query: 377 KHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAY 436
           KHIDCGMGFERLVSVIQ+KRSNYDTD+FVPLF+AIQ GTGAPPYQGRVG +D +GIDMAY
Sbjct: 235 KHIDCGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAY 294

Query: 437 RVLADHARTLTIALADGGRPDNTGRG 462
           RVLADHART+TIALADGG PDNTGRG
Sbjct: 295 RVLADHARTITIALADGGTPDNTGRG 320
Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7
>sp|P50475|SYAC_RAT Alanine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1 SV=3 Back     alignment and function description
>sp|P49588|SYAC_HUMAN Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 Back     alignment and function description
>sp|Q8BGQ7|SYAC_MOUSE Alanine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Aars PE=1 SV=1 Back     alignment and function description
>sp|Q5RC02|SYAC_PONAB Alanine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1 Back     alignment and function description
>sp|Q8CFX8|SYAC_MESAU Alanine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=Aars PE=2 SV=1 Back     alignment and function description
>sp|Q5A8K2|SYA_CANAL Alanine--tRNA ligase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ALA1 PE=1 SV=1 Back     alignment and function description
>sp|P21894|SYAC_BOMMO Alanine--tRNA ligase, cytoplasmic OS=Bombyx mori PE=1 SV=1 Back     alignment and function description
>sp|O01541|SYAC_CAEEL Alanine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=aars-2 PE=2 SV=1 Back     alignment and function description
>sp|P40825|SYA_YEAST Alanine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ALA1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query854
380028001 1192 PREDICTED: alanine--tRNA ligase, cytopla 0.606 0.434 0.481 1e-141
328781428 1194 PREDICTED: alanyl-tRNA synthetase, cytop 0.606 0.433 0.486 1e-141
442755487 968 Putative alanyl-trna synthetase translat 0.608 0.537 0.480 1e-136
391342382 965 PREDICTED: alanine--tRNA ligase, cytopla 0.614 0.544 0.490 1e-136
391342384 975 PREDICTED: alanine--tRNA ligase, cytopla 0.614 0.538 0.490 1e-136
391342386 977 PREDICTED: alanine--tRNA ligase, cytopla 0.614 0.537 0.490 1e-136
340370456 966 PREDICTED: alanyl-tRNA synthetase, cytop 0.608 0.538 0.444 1e-126
193656980 955 PREDICTED: alanyl-tRNA synthetase, cytop 0.584 0.522 0.458 1e-126
340370458 966 PREDICTED: alanyl-tRNA synthetase, cytop 0.611 0.540 0.439 1e-125
449674132 997 PREDICTED: alanine--tRNA ligase, cytopla 0.597 0.511 0.451 1e-124
>gi|380028001|ref|XP_003697700.1| PREDICTED: alanine--tRNA ligase, cytoplasmic-like [Apis florea] Back     alignment and taxonomy information
 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 290/602 (48%), Positives = 371/602 (61%), Gaps = 84/602 (13%)

Query: 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
           ++ D+FK K H+YVHSS  IP DDPTLLF NAGMNQ+KPIFLG VDPNSDMAKLVRAVN+
Sbjct: 13  AYIDFFKNKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGIVDPNSDMAKLVRAVNS 72

Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCS---- 269
           QKCIRAGGKHNDLDDVGKDVYHHTFFE++              W  G+      C+    
Sbjct: 73  QKCIRAGGKHNDLDDVGKDVYHHTFFEMMGN------------WSFGDYFKKEICTWAWE 120

Query: 270 ------ELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQR---SMKDNFWEMGE 320
                 +L  DR+       D  N   P  +   +   L          +MKDNFWEMGE
Sbjct: 121 FLTVKLKLSSDRLYVTYFGGDEKNNLKPDEECKQIWLSLGLSPTHILPGNMKDNFWEMGE 180

Query: 321 TGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHID 380
           TGPCGP SE+HYDRIG  R AA LVNQDDPDVLEIWNLVFIQ+NRE +G+LK LPKKHID
Sbjct: 181 TGPCGPSSEIHYDRIGN-REAAHLVNQDDPDVLEIWNLVFIQFNRENNGNLKLLPKKHID 239

Query: 381 CGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLA 440
           CG+G ERLVS+IQ+K +NYDTD+F+PLF+AIQKGT AP YQG+VG+EDK+GIDMAYRVLA
Sbjct: 240 CGLGLERLVSIIQNKSANYDTDLFMPLFDAIQKGTRAPSYQGKVGKEDKDGIDMAYRVLA 299

Query: 441 DHARTLTIALADGGRPDNTGRG--LKPLPKKHIDCGMG--------FERLVSIIQDKRSN 490
           DHART+TIALADGG PDNTGRG  L+ + ++ +   +         F  LV+++      
Sbjct: 300 DHARTITIALADGGIPDNTGRGYVLRRILRRAVRYAIEKLNAKPGFFGSLVNVV------ 353

Query: 491 YDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEED 550
              D+ G   P     V ++ +  ID+         +TL+      GR +   R + + +
Sbjct: 354 --VDLLGDVFP----EVTKDPQHIIDIINEEETQFLKTLS-----RGR-NLLNRTIVKLE 401

Query: 551 KEGI---DMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPR 607
              +   D+A+R+   +           G P +  +  V  + L+  +  G E+   + +
Sbjct: 402 SSNVLPGDVAWRLYDTY-----------GFPFDLTQLMVEEKGLKVDI-IGYEEAKKQAQ 449

Query: 608 LFSSLVNTVVDLLLLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDT 667
           L             +SQ K   ++D I LD+H+IT+LQ + + PT+D PKY Y       
Sbjct: 450 L-------------ISQNKSGEVDDQINLDVHAITELQNKKIKPTNDIPKYNYKVINNKI 496

Query: 668 ADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 727
            +  YEF PC  TV+ LR  K FV+ VSSG E GILLD++NFYAEQGGQ+YDEGF+  ++
Sbjct: 497 CE-EYEFAPCFSTVIALRRAKTFVNEVSSGEEVGILLDQTNFYAEQGGQMYDEGFLTKID 555

Query: 728 DE 729
           DE
Sbjct: 556 DE 557

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328781428|ref|XP_395392.3| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Apis mellifera] Back     alignment and taxonomy information
>gi|442755487|gb|JAA69903.1| Putative alanyl-trna synthetase translation [Ixodes ricinus] Back     alignment and taxonomy information
>gi|391342382|ref|XP_003745499.1| PREDICTED: alanine--tRNA ligase, cytoplasmic-like isoform 1 [Metaseiulus occidentalis] Back     alignment and taxonomy information
>gi|391342384|ref|XP_003745500.1| PREDICTED: alanine--tRNA ligase, cytoplasmic-like isoform 2 [Metaseiulus occidentalis] Back     alignment and taxonomy information
>gi|391342386|ref|XP_003745501.1| PREDICTED: alanine--tRNA ligase, cytoplasmic-like isoform 3 [Metaseiulus occidentalis] Back     alignment and taxonomy information
>gi|340370456|ref|XP_003383762.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like isoform 1 [Amphimedon queenslandica] Back     alignment and taxonomy information
>gi|193656980|ref|XP_001950431.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|340370458|ref|XP_003383763.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like isoform 2 [Amphimedon queenslandica] Back     alignment and taxonomy information
>gi|449674132|ref|XP_002160302.2| PREDICTED: alanine--tRNA ligase, cytoplasmic-like [Hydra magnipapillata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query854
FB|FBgn0027094 966 Aats-ala "Alanyl-tRNA syntheta 0.352 0.311 0.703 2.4e-140
UNIPROTKB|A6QLT9 968 AARS "AARS protein" [Bos tauru 0.351 0.309 0.688 5e-136
UNIPROTKB|F1S431 954 AARS "Uncharacterized protein" 0.351 0.314 0.679 1.1e-133
UNIPROTKB|F1P7C2 968 AARS "Uncharacterized protein" 0.351 0.309 0.676 2.3e-133
UNIPROTKB|J9P755 952 AARS "Uncharacterized protein" 0.351 0.315 0.676 2.3e-133
UNIPROTKB|P49588 968 AARS "Alanine--tRNA ligase, cy 0.347 0.306 0.669 2.3e-133
MGI|MGI:2384560 968 Aars "alanyl-tRNA synthetase" 0.351 0.309 0.673 4.7e-133
RGD|1304832 968 Aars "alanyl-tRNA synthetase" 0.352 0.310 0.684 7.6e-133
WB|WBGene00000197 968 aars-2 [Caenorhabditis elegans 0.355 0.314 0.624 1.4e-131
ZFIN|ZDB-GENE-030131-3663 991 aars "alanyl-tRNA synthetase" 0.354 0.305 0.660 2.9e-131
FB|FBgn0027094 Aats-ala "Alanyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1080 (385.2 bits), Expect = 2.4e-140, Sum P(2) = 2.4e-140
 Identities = 218/310 (70%), Positives = 240/310 (77%)

Query:   158 DYFKKQ-HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKC 216
             D+FK+Q H YVHSS  IP DDPTLLFANAGMNQ+KPIFLGT DPNS+M+K VR  NTQKC
Sbjct:    15 DFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRVANTQKC 74

Query:   217 IRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNF---WEMGETGPCGPCSELHY 273
             IRAGGKHNDLDDVGKDVYHHTFFE+L          K+     WE        P   L+ 
Sbjct:    75 IRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTQRLALPKDRLYV 134

Query:   274 DRIGGGRNAADLVNQDDPAYKADL-LPSKLTRLENQRSMKDNFWEMGETGPCGPCSELHY 332
                GG  +AA  +  D    +  L L  K   +    SMKDNFWEMGETGPCGPCSELH+
Sbjct:   135 TYFGG--DAASGLEPDLECKQMWLDLGLKPEHIL-PGSMKDNFWEMGETGPCGPCSELHF 191

Query:   333 DRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVI 392
             DRIGG R+  +LVN DDPDVLEIWNLVFIQYNRE+DGSLK LPKKHIDCGMGFERLVSVI
Sbjct:   192 DRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFERLVSVI 250

Query:   393 QDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALAD 452
             Q+KRSNYDTD+FVPLF+AIQ GTGAPPYQGRVG +D +GIDMAYRVLADHART+TIALAD
Sbjct:   251 QNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLADHARTITIALAD 310

Query:   453 GGRPDNTGRG 462
             GG PDNTGRG
Sbjct:   311 GGTPDNTGRG 320
GO:0006419 "alanyl-tRNA aminoacylation" evidence=ISS
GO:0004813 "alanine-tRNA ligase activity" evidence=ISS;NAS
GO:0005737 "cytoplasm" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
UNIPROTKB|A6QLT9 AARS "AARS protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S431 AARS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7C2 AARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P755 AARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P49588 AARS "Alanine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2384560 Aars "alanyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1304832 Aars "alanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00000197 aars-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3663 aars "alanyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.7LOW CONFIDENCE prediction!
3rd Layer6.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query854
PLN02900 936 PLN02900, PLN02900, alanyl-tRNA synthetase 1e-142
pfam01411551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 1e-119
PRK00252 865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 4e-98
TIGR00344 851 TIGR00344, alaS, alanine--tRNA ligase 8e-89
COG0013 879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 5e-86
cd00673232 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS 4e-82
PLN02900936 PLN02900, PLN02900, alanyl-tRNA synthetase 7e-56
pfam01411551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 8e-49
PLN02900 936 PLN02900, PLN02900, alanyl-tRNA synthetase 1e-46
cd00673232 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS 1e-44
PRK01584594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 6e-44
pfam01411551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 3e-43
PRK00252865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 1e-42
PLN02900 936 PLN02900, PLN02900, alanyl-tRNA synthetase 1e-40
COG0013879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 1e-38
COG0013 879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 6e-38
PRK00252 865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 1e-37
TIGR00344851 TIGR00344, alaS, alanine--tRNA ligase 2e-35
TIGR00344 851 TIGR00344, alaS, alanine--tRNA ligase 1e-34
TIGR00344 851 TIGR00344, alaS, alanine--tRNA ligase 2e-32
pfam01411551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 1e-30
cd00673232 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS 5e-27
PRK00252865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 2e-26
pfam01411 551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 9e-26
COG0013879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 5e-24
PLN02900 936 PLN02900, PLN02900, alanyl-tRNA synthetase 2e-22
PRK01584594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 4e-22
COG0013 879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 1e-21
PRK00252 865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 2e-21
TIGR00344 851 TIGR00344, alaS, alanine--tRNA ligase 5e-19
PRK01584594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 2e-18
pfam01411551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 1e-15
PLN02900 936 PLN02900, PLN02900, alanyl-tRNA synthetase 2e-15
PRK01584594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 6e-15
PRK00252 865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 1e-10
PRK01584 594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 1e-10
TIGR00344 851 TIGR00344, alaS, alanine--tRNA ligase 2e-10
COG0013 879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 2e-10
PRK13902 900 PRK13902, alaS, alanyl-tRNA synthetase; Provisiona 1e-09
PLN02900 936 PLN02900, PLN02900, alanyl-tRNA synthetase 2e-09
PRK13902 900 PRK13902, alaS, alanyl-tRNA synthetase; Provisiona 2e-09
PRK13902 900 PRK13902, alaS, alanyl-tRNA synthetase; Provisiona 5e-09
TIGR03683 902 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase 2e-08
TIGR03683 902 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase 4e-08
TIGR03683 902 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase 5e-08
pfam01411 551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 9e-08
PRK00252 865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 2e-07
cd00673232 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS 3e-07
cd00673232 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS 5e-07
COG0013 879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 7e-05
TIGR00344 851 TIGR00344, alaS, alanine--tRNA ligase 2e-04
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information 
 Score =  444 bits (1144), Expect = e-142
 Identities = 184/330 (55%), Positives = 217/330 (65%), Gaps = 48/330 (14%)

Query: 156 FGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
           F  +F  K H ++ SS ++P DDPTLLF NAGMNQ+KPIFLGT DPN+ + KL RA NTQ
Sbjct: 20  FLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQ 79

Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPG--SMKDNF--------WEM--GET 262
           KCIRAGGKHNDLDDVGKD YHHTFFE+L       G  S  D F        WE+     
Sbjct: 80  KCIRAGGKHNDLDDVGKDTYHHTFFEML-------GNWSFGDYFKKEAIGWAWELLTKVY 132

Query: 263 GPCGPCSELHYDRIGGGRNAADLVNQDDPAYKAD----------LLPSKLTRLENQRSMK 312
           G       L  DR+             D     D          L   ++         K
Sbjct: 133 G-------LPADRLYAT------YFGGDEKQAPDDEARAIWLDYLPEERVLPFGC----K 175

Query: 313 DNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLK 372
           DNFWEMG+TGPCGPCSE+HYDRIG  R+AADLVN DDP  +EIWNLVFIQ+NRE DGSLK
Sbjct: 176 DNFWEMGDTGPCGPCSEIHYDRIGE-RDAADLVNNDDPRFIEIWNLVFIQFNREADGSLK 234

Query: 373 PLPKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGI 432
           PLP KH+D GMG ERL S++Q+K SNYDTD+F+P+F+AIQ+ TGA PY G+VG ED + +
Sbjct: 235 PLPAKHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRV 294

Query: 433 DMAYRVLADHARTLTIALADGGRPDNTGRG 462
           DMAYRV+ADH RTL+ A+ADG  P N GRG
Sbjct: 295 DMAYRVVADHIRTLSFAIADGVVPSNEGRG 324

Length = 936
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 854
KOG0188|consensus 895 100.0
PLN02900 936 alanyl-tRNA synthetase 100.0
COG0013 879 AlaS Alanyl-tRNA synthetase [Translation, ribosoma 100.0
TIGR00344 851 alaS alanine--tRNA ligase. The model describes ala 100.0
PRK00252 865 alaS alanyl-tRNA synthetase; Reviewed 100.0
PF01411552 tRNA-synt_2c: tRNA synthetases class II (A); Inter 100.0
TIGR03683 902 A-tRNA_syn_arch alanyl-tRNA synthetase. This famil 100.0
PRK13902 900 alaS alanyl-tRNA synthetase; Provisional 100.0
PRK01584594 alanyl-tRNA synthetase; Provisional 100.0
cd00673232 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II 100.0
KOG0188|consensus 895 100.0
PLN02900 936 alanyl-tRNA synthetase 100.0
COG0013 879 AlaS Alanyl-tRNA synthetase [Translation, ribosoma 100.0
TIGR00344 851 alaS alanine--tRNA ligase. The model describes ala 100.0
PRK00252 865 alaS alanyl-tRNA synthetase; Reviewed 100.0
PF01411 552 tRNA-synt_2c: tRNA synthetases class II (A); Inter 100.0
PRK01584 594 alanyl-tRNA synthetase; Provisional 100.0
TIGR03683 902 A-tRNA_syn_arch alanyl-tRNA synthetase. This famil 100.0
cd00673232 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II 100.0
PRK13902 900 alaS alanyl-tRNA synthetase; Provisional 100.0
COG2872241 Predicted metal-dependent hydrolases related to al 99.59
PLN02961223 alanine-tRNA ligase 99.45
KOG2105|consensus 415 95.13
COG0752298 GlyQ Glycyl-tRNA synthetase, alpha subunit [Transl 89.37
cd00733279 GlyRS_alpha_core Class II Glycyl-tRNA synthetase ( 83.49
TIGR00388293 glyQ glycyl-tRNA synthetase, tetrameric type, alph 82.78
>KOG0188|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.6e-147  Score=1246.91  Aligned_cols=501  Identities=57%  Similarity=0.902  Sum_probs=435.8

Q ss_pred             CCccccCCCceEeCCCCCCCCCCCcceeeecccccccccccCCcCCCCcccccccccccccceecCCCccCccCcCCCCC
Q psy16314          1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVY   80 (854)
Q Consensus         1 ~~~f~~~~~h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~g~~~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg~~~~   80 (854)
                      ||||+ +|.|++||||||||.+||||||+|||||||||+|||+      |++++||+|+||||||||||||||+||||.|
T Consensus        12 ldfF~-~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt------~a~lkRa~NsQKCIRAGGKHNDLdDVGkD~y   84 (895)
T KOG0188|consen   12 LDFFK-SKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT------MAKLKRAANSQKCIRAGGKHNDLDDVGKDFY   84 (895)
T ss_pred             HHHHH-hcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc------hhhhHhhhhhhhHHhccCCcCChhHhchhcc
Confidence            68999 5779999999999999999999999999999999998      6789999999999999999999999999999


Q ss_pred             cceeeeecccccccccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhcccccccccc
Q psy16314         81 HHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF  160 (854)
Q Consensus        81 h~t~femlg~~s~g~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~fld~f  160 (854)
                      ||||||||||||||||||+|||         .|||   ||||+                                   .|
T Consensus        85 HhTfFEMlGNWSFGdYfK~Eac---------~~Aw---elLt~-----------------------------------vy  117 (895)
T KOG0188|consen   85 HHTFFEMLGNWSFGDYFKEEAC---------AWAW---ELLTF-----------------------------------VY  117 (895)
T ss_pred             ccCchhhcCCCCcchHHHHHHH---------HHHH---HHHHH-----------------------------------hh
Confidence            9999999999999999999999         9999   99999                                   78


Q ss_pred             ccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccchhhhccc
Q psy16314        161 KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFE  240 (854)
Q Consensus       161 kk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~wH~Tffe  240 (854)
                                 +||++|+           |+|||.|  ++..+++                    .|.|++++|    ..
T Consensus       118 -----------gi~~dRL-----------YVtYF~G--de~~Gl~--------------------~D~E~r~iW----~~  149 (895)
T KOG0188|consen  118 -----------GIPTDRL-----------YVTYFGG--DEKLGLE--------------------PDLECREIW----NE  149 (895)
T ss_pred             -----------cCCCceE-----------EEEEecC--ccccCCC--------------------CCcHHHHHH----HH
Confidence                       9999999           9999999  8988886                    799999999    77


Q ss_pred             c-cCCCcccCCCCCcceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhccccccccccccC
Q psy16314        241 I-LPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMG  319 (854)
Q Consensus       241 M-lgn~~i~~f~~~DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~kdNfW~~G  319 (854)
                      . +|.+||++||.+|||||||++|||||||||||||+|                                          
T Consensus       150 ~Gvp~srILp~~~kDNFWEMGdtGPCGPCtEIHyDriG------------------------------------------  187 (895)
T KOG0188|consen  150 LGVPDSRILPFGMKDNFWEMGDTGPCGPCTEIHYDRIG------------------------------------------  187 (895)
T ss_pred             cCCChhhccCCccccchhhhcCCCCCCcchhhhhhhhc------------------------------------------
Confidence            7 899999998888888888877777777777666664                                          


Q ss_pred             CCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCCCCchhhhHHhhhCCCCCc
Q psy16314        320 ETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSNY  399 (854)
Q Consensus       320 ~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDTGmGlERl~~ilqg~~SnY  399 (854)
                                        |++++.++|.|||+++||||+|||||||++||++.|||++|||||||||||++|||++.|||
T Consensus       188 ------------------~r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGfERLvsVlQnk~SNY  249 (895)
T KOG0188|consen  188 ------------------GRDAVKLVNHDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGFERLVSVLQNKTSNY  249 (895)
T ss_pred             ------------------CcchHHHhcCCCcCceeeeeeeeeeeccccCCccccCcccccccccCHHHHHHHHhcccccc
Confidence                              56778899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCCCCCcCCccccccCCCHHH
Q psy16314        400 DTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGFER  479 (854)
Q Consensus       400 dtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~~l~~L~~~~iDtGmGlER  479 (854)
                      |||+|.|||++||+.++.+ |+|   + +                                                   
T Consensus       250 DTDlFtPif~aiq~~~~~~-YtG---~-d---------------------------------------------------  273 (895)
T KOG0188|consen  250 DTDLFTPIFEAIQEGTGAR-YTG---E-D---------------------------------------------------  273 (895)
T ss_pred             cchhhHHHHHHHHHhcCCC-ccC---C-c---------------------------------------------------
Confidence            9999999999999999987 865   1 1                                                   


Q ss_pred             HHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCCCCCCcccccchhhhH
Q psy16314        480 LVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYR  559 (854)
Q Consensus       480 L~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R  559 (854)
                                                                                             ...+|+|||
T Consensus       274 -----------------------------------------------------------------------~d~~D~AyR  282 (895)
T KOG0188|consen  274 -----------------------------------------------------------------------ADGIDTAYR  282 (895)
T ss_pred             -----------------------------------------------------------------------cccchhhHH
Confidence                                                                                   123579999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH-------------------
Q psy16314        560 VLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL-------------------  620 (854)
Q Consensus       560 vIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~-------------------  620 (854)
                      |+|||+|+++++||||++|+|+|||||||||||||+|+++++||+++.||++|||+||+.|                   
T Consensus       283 VvADH~RtlTvalsDG~~Pdn~GrgyvLRRILRRavrya~e~l~~~~g~~~~LVpvvv~~lgd~fPEl~~~~~~v~diin  362 (895)
T KOG0188|consen  283 VVADHARTLTVALSDGGVPDNTGRGYVLRRILRRAVRYAHEKLNAPPGFFSTLVPVVVETLGDAFPELKRDPQHVIDIIN  362 (895)
T ss_pred             HHHHHhhhhheeeecCCCCCCCCChhHHHHHHHHHHHHHHHHhCCCcchhhhhhHHHHHHHhhhchhhhcCHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999                   


Q ss_pred             --------HHhcC--------------------CCCccccccccCHHHHHHH-HHcCCCCCCCCCccc----c-------
Q psy16314        621 --------LLSQG--------------------KGATIEDTIGLDIHSITDL-QTRGVPPTDDSPKYR----Y-------  660 (854)
Q Consensus       621 --------~~~~~--------------------~~~~l~dt~g~~~~~~~~l-~~~~~~~t~d~~~y~----~-------  660 (854)
                              +++.+                    ..+.||||||||+++++.| +++|+.+|.++|+-.    +       
T Consensus       363 eEE~~F~ktl~rg~~~f~r~~~~~~~s~tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~  442 (895)
T KOG0188|consen  363 EEEAQFLKTLDRGRKLFDRVARELGSSKTIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAG  442 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccC
Confidence                    11111                    1356999999999999986 668998887654211    0       


Q ss_pred             --C-----CC----CCCCCC-Ccc-ccccceeEEEEEeeCCeeeeeccCCCeeEEEeecccccccCCCccccceEEEccC
Q psy16314        661 --T-----PT----QPDTAD-GAY-EFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN  727 (854)
Q Consensus       661 --~-----~~----~~~t~F-~GY-e~~~~~a~Vlai~~dg~~V~~~~~G~~~~vvLD~TpFYaEsGGQvgDtG~I~~~~  727 (854)
                        .     ..    .++|.. -.| ++..++++|+++..++.+|++++.|++++||||+|+||||+|||++|+|.|+..+
T Consensus       443 ~~~~~i~ldvl~el~p~TdDs~KY~~~~~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~  522 (895)
T KOG0188|consen  443 GGKLSIDLDVLSELVPPTDDSFKYNEFGVCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDG  522 (895)
T ss_pred             CCCCcccHHHHHhhCCCCCCccccccCccchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEec
Confidence              0     00    123322 267 7788999999999999999999999999999999999999999999999999877


Q ss_pred             cceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHhhhhhhhcCCCCccchhhHHHHH
Q psy16314        728 DELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVV  802 (854)
Q Consensus       728 ~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~R~~~~~Lg~~~~~L~~LV~~~i  802 (854)
                      .+..|     +.|..+   ..++.++|..--  +. .. ..|-.+-+.+|-.+|...|+-|+..|+|+-.+..++
T Consensus       523 ~~~~~-----fnV~~~---~~gg~vvh~g~l--~~-~l-~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l  585 (895)
T KOG0188|consen  523 DEDFV-----FNVKRV---QVGGYVVHIGVL--EG-DL-SVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVL  585 (895)
T ss_pred             Cccce-----eehhhc---ccCCEEEEEeee--cc-cc-ccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhc
Confidence            65434     223444   447777776432  11 11 368889999999999999999999998887776665

>PLN02900 alanyl-tRNA synthetase Back     alignment and domain information
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00344 alaS alanine--tRNA ligase Back     alignment and domain information
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase Back     alignment and domain information
>PRK13902 alaS alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK01584 alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>KOG0188|consensus Back     alignment and domain information
>PLN02900 alanyl-tRNA synthetase Back     alignment and domain information
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00344 alaS alanine--tRNA ligase Back     alignment and domain information
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK01584 alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase Back     alignment and domain information
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>PRK13902 alaS alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] Back     alignment and domain information
>PLN02961 alanine-tRNA ligase Back     alignment and domain information
>KOG2105|consensus Back     alignment and domain information
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain Back     alignment and domain information
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query854
3hxu_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 3e-56
3hxu_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 4e-18
3hxu_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 4e-11
3hxz_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 9e-56
3hxz_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 2e-17
3hxz_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 5e-11
1yfr_A465 Crystal Structure Of Alanyl-Trna Synthetase In Comp 2e-51
1yfr_A465 Crystal Structure Of Alanyl-Trna Synthetase In Comp 2e-15
1yfr_A465 Crystal Structure Of Alanyl-Trna Synthetase In Comp 2e-07
3htz_A464 Crystal Structure Of The Catalytic Fragment Of Alan 2e-51
3htz_A464 Crystal Structure Of The Catalytic Fragment Of Alan 2e-15
3htz_A464 Crystal Structure Of The Catalytic Fragment Of Alan 2e-07
1riq_A465 The Crystal Structure Of The Catalytic Fragment Of 2e-48
1riq_A465 The Crystal Structure Of The Catalytic Fragment Of 2e-11
2zzf_A752 Crystal Structure Of Alanyl-Trna Synthetase Without 7e-09
2zzf_A 752 Crystal Structure Of Alanyl-Trna Synthetase Without 7e-04
2zze_A 752 Crystal Structure Of Alanyl-Trna Synthetase Without 3e-06
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 Back     alignment and structure 
Iteration: 1

 Score =  217 bits (552), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 125/320 (39%), Positives = 175/320 (54%), Gaps = 35/320 (10%)
Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
           +F D+F  K H  V SS ++P +DPTLLF NAGMNQ+K +FLG      D     RA  +
Sbjct: 10  AFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGL-----DKRNYSRATTS 64
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
           Q+C+RAGGKHNDL++VG    HHTFFE+L        S  D F            +   +
Sbjct: 65  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNF-----SFGDYFKLDAILFAWLLLTSEKW 119
Query: 274 DRIGGGRNAADLVNQDDPAYK-----ADLLPSKLTRLENQRSM---KDNFWEMGETGPCG 325
             +   R    +   DD AY+       +   ++ R+ + +      DNFW+MG+TGPCG
Sbjct: 120 FALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCG 179
Query: 326 PCSELHYDR---IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCG 382
           PC+E+ YD    I GG   +    +D    +EIWN+VF+Q+NR+ DG+++PLPK  +D G
Sbjct: 180 PCTEIFYDHGDHIWGGPPGSP--EEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTG 237
Query: 383 MGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADH 442
           MG ER+ +V+Q   SNYD D+F  L +A+ K TGA     +           + RV+ADH
Sbjct: 238 MGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK-----------SLRVIADH 286
Query: 443 ARTLTIALADGGRPDNTGRG 462
            R+    +ADG  P N  RG
Sbjct: 287 IRSCAFLIADGVMPSNENRG 306
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 Back     alignment and structure
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 Back     alignment and structure
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 Back     alignment and structure
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 Back     alignment and structure
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 Back     alignment and structure
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 Back     alignment and structure
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 Back     alignment and structure
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 Back     alignment and structure
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752 Back     alignment and structure
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752 Back     alignment and structure
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain In Lysine-Methylated Form Length = 752 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query854
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 1e-107
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 2e-49
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 3e-36
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 8e-31
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 3e-21
3hy0_A 441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 2e-04
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 1e-103
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 1e-48
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 1e-36
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 1e-30
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 1e-20
1yfs_A 465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 6e-06
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 3e-59
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 5e-35
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 5e-35
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 9e-20
2ztg_A 739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 2e-18
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 2e-46
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 2e-21
2zze_A 752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 3e-11
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 9e-11
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 9e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
3kew_A241 DHHA1 domain protein; structural genomics, PSI-2, 1e-04
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 Back     alignment and structure
 Score =  337 bits (866), Expect = e-107
 Identities = 129/333 (38%), Positives = 176/333 (52%), Gaps = 61/333 (18%)

Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
           +F D+F  K H  V SS ++P +DPTLLF NAGMNQ+K +FLG    N       RA  +
Sbjct: 10  AFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNY-----SRATTS 64

Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPG--SMKDNF--------WEMGETG 263
           Q+C+RAGGKHNDL++VG    HHTFFE+L       G  S  D F        W +  T 
Sbjct: 65  QRCVRAGGKHNDLENVGYTARHHTFFEML-------GNFSFGDYFKLDAILFAWLL-LTS 116

Query: 264 PCGPCSELHYDRIGGGRNAADLV---NQDDPAY-----KADLLPSKLTRL---ENQRSMK 312
                  L  +R+         V     DD AY     +  +   ++ R+   +      
Sbjct: 117 E--KWFALPKERL--------WVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYAS 166

Query: 313 DNFWEMGETGPCGPCSELHYDR---IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDG 369
           DNFW+MG+TGPCGPC+E+ YD    I GG        +D    +EIWN+VF+Q+NR+ DG
Sbjct: 167 DNFWQMGDTGPCGPCTEIFYDHGDHIWGGPP--GSPEEDGDRYIEIWNIVFMQFNRQADG 224

Query: 370 SLKPLPKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDK 429
           +++PLPK  +D  MG ER+ +V+Q   SNYD D+F  L +A+ K TGA            
Sbjct: 225 TMEPLPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLS-------- 276

Query: 430 EGIDMAYRVLADHARTLTIALADGGRPDNTGRG 462
              + + RV+ADH R+    +ADG  P N  RG
Sbjct: 277 ---NKSLRVIADHIRSCAFLIADGVMPSNENRG 306
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 Back     alignment and structure
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 Back     alignment and structure
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 Back     alignment and structure
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 Back     alignment and structure
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 Back     alignment and structure
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query854
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 100.0
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 100.0
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 100.0
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 100.0
2zze_A 752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 100.0
2ztg_A 739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 100.0
3kew_A241 DHHA1 domain protein; structural genomics, PSI-2, 99.49
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 99.42
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Back     alignment and structure
Probab=100.00  E-value=1.8e-125  Score=1042.64  Aligned_cols=359  Identities=44%  Similarity=0.794  Sum_probs=314.6

Q ss_pred             CCccccCCCceEeCCCCCCCCCCCcceeeecccccccccccCCcCCCCcccccccccccccceecCCCccCccCcCCCCC
Q psy16314          1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVY   80 (854)
Q Consensus         1 ~~~f~~~~~h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~g~~~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg~~~~   80 (854)
                      |+||+ +|||++||||||||.+||||||||||||||||||+|++.|+     ++||||+|||||||||||||||||+|+|
T Consensus        12 l~FF~-~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~~~sQkCiR~gGKHnDlenVG~t~r   85 (441)
T 3hy0_A           12 LDFFH-SKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRN-----YSRATTSQRCVRAGGKHNDLENVGYTAR   85 (441)
T ss_dssp             HHHHH-HTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCS-----CSEEEEEEEEECEETTEECGGGBTTBSS
T ss_pred             HHHHH-hCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCCC-----CCCccccccceecCCCCCCHHhhCCCCc
Confidence            58999 69999999999999999999999999999999999998874     7999999999999999999999999999


Q ss_pred             cceeeeecccccccccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhcccccccccc
Q psy16314         81 HHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF  160 (854)
Q Consensus        81 h~t~femlg~~s~g~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~fld~f  160 (854)
                      ||||||||||||||||||+|||         .|||   ||||+.                                 ++|
T Consensus        86 HhTfFEMLGNfSFGDYFK~eAI---------~~Aw---e~LT~~---------------------------------~~l  120 (441)
T 3hy0_A           86 HHTFFEMLGNFSFGDYFKLDAI---------LFAW---LLLTSE---------------------------------KWF  120 (441)
T ss_dssp             CCSEEEEEEEEESSSCCHHHHH---------HHHH---HHHHCT---------------------------------TTT
T ss_pred             cccceeeccccccchhhHHHHH---------HHHH---HHhCCC---------------------------------Ccc
Confidence            9999999999999999999999         9999   999941                                 167


Q ss_pred             ccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccchhhhccc
Q psy16314        161 KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFE  240 (854)
Q Consensus       161 kk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~wH~Tffe  240 (854)
                                 .||++++           |+|||.+                              |+|++++|+..  .
T Consensus       121 -----------gl~~erL-----------~vTvf~~------------------------------D~Ea~~iW~~~--~  146 (441)
T 3hy0_A          121 -----------ALPKERL-----------WVTVYES------------------------------DDEAYEIWEKE--V  146 (441)
T ss_dssp             -----------CCCGGGE-----------EEEEETT------------------------------CHHHHHHHHHT--T
T ss_pred             -----------CCCHHHe-----------EEEEeCC------------------------------CHHHHHHHHHc--c
Confidence                       9999999           9999997                              89999999431  1


Q ss_pred             ccCCCcccCCC-------CCcceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhccccccc
Q psy16314        241 ILPESHIIPGS-------MKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKD  313 (854)
Q Consensus       241 Mlgn~~i~~f~-------~~DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~kd  313 (854)
                      -++.+||++++       .+||||+||++||||||||||||++..                                   
T Consensus       147 Gvp~~rI~~~g~~~~~~y~~dNFW~mG~tGPCGPCsEI~yD~g~~-----------------------------------  191 (441)
T 3hy0_A          147 GIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDH-----------------------------------  191 (441)
T ss_dssp             CCCGGGEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEECCTT-----------------------------------
T ss_pred             CCCHHHeeecCccccccccccCchhcCCCcCCcCCeeEEEecCcc-----------------------------------
Confidence            27899999887       677777777777777777777777530                                   


Q ss_pred             cccccCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCCCCchhhhHHhhh
Q psy16314        314 NFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQ  393 (854)
Q Consensus       314 NfW~~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDTGmGlERl~~ilq  393 (854)
                       +       .||             +++  .+++|++||+||||+|||||||+++|++.|||++|||||||||||++|||
T Consensus       192 -~-------~~g-------------~~~--~~~~d~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGLERla~vlQ  248 (441)
T 3hy0_A          192 -I-------WGG-------------PPG--SPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLERIAAVLQ  248 (441)
T ss_dssp             -S-------CCC-------------CTT--STTTTSSSEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHT
T ss_pred             -c-------CCC-------------CCC--CCCCCCCCeEEEeeeeeeeeeecCCCccccCCCCceecCCCHHHHHHHHc
Confidence             0       012             111  23578999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCCCCCcCCcccccc
Q psy16314        394 DKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDC  473 (854)
Q Consensus       394 g~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~~l~~L~~~~iDt  473 (854)
                      |++||||||+|.|||+++++++|.. |                                                     
T Consensus       249 g~~snYdtDlf~pii~~i~~~~g~~-~-----------------------------------------------------  274 (441)
T 3hy0_A          249 HVNSNYDIDLFRTLIQAVAKVTGAT-D-----------------------------------------------------  274 (441)
T ss_dssp             TCSSGGGSHHHHHHHHHHHHHHTCC-C-----------------------------------------------------
T ss_pred             CCCccccchhHHHHHHHHHHHhCCC-c-----------------------------------------------------
Confidence            9999999999999999999888753 1                                                     


Q ss_pred             CCCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCCCCCCccccc
Q psy16314        474 GMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEG  553 (854)
Q Consensus       474 GmGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  553 (854)
                                                                                                     .
T Consensus       275 -------------------------------------------------------------------------------~  275 (441)
T 3hy0_A          275 -------------------------------------------------------------------------------L  275 (441)
T ss_dssp             -------------------------------------------------------------------------------T
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             chhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH-------------
Q psy16314        554 IDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL-------------  620 (854)
Q Consensus       554 ~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~-------------  620 (854)
                      .+.++||||||+||++|+|+|||+|||+|||||||||||||+|+|+ +||++.+||++||++|++.|             
T Consensus       276 ~~~s~rvIADH~R~~~f~iaDGv~PsNeGrGYVLRRilRRAvr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPeL~~~~~~  354 (441)
T 3hy0_A          276 SNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGN-MLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQ  354 (441)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHH-HHTCCSCCGGGGHHHHHHHHGGGGHHHHHTHHH
T ss_pred             ccceeEEecchHHHHHHHHhcCcccCCCCcchhHHHHHHHHHHHHH-HhCCCCccHHHHHHHHHHHHhhhhhHHHhhHHH
Confidence            1379999999999999999999999999999999999999999994 89999999999999999999             


Q ss_pred             -------------------------HHhcC--------CCCccccccccCHHHHHHH-HHcCCCCCCCCC
Q psy16314        621 -------------------------LLSQG--------KGATIEDTIGLDIHSITDL-QTRGVPPTDDSP  656 (854)
Q Consensus       621 -------------------------~~~~~--------~~~~l~dt~g~~~~~~~~l-~~~~~~~t~d~~  656 (854)
                                               .+++.        .+|+||||||||+|+++++ +++|+.++.++|
T Consensus       355 I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~~l~g~~af~LyDTyGfP~dLt~eia~e~g~~vD~~~F  424 (441)
T 3hy0_A          355 VEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGF  424 (441)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHSCCSSEECHHHHHHHHHHHCCCHHHHHHHHHTTTCEECHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhcCCCCHHHHHHHHHHcCCcccHHHH
Confidence                                     00111        1367999999999999985 679998876543
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Back     alignment and structure
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 854
d1riqa2236 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) 2e-63
d1riqa2236 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) 2e-31
d1riqa2236 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) 6e-21
d1riqa2236 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) 2e-09
d1riqa1221 a.203.1.1 (A:237-457) Putative anticodon-binding d 4e-14
d1riqa1221 a.203.1.1 (A:237-457) Putative anticodon-binding d 9e-13
d1riqa1221 a.203.1.1 (A:237-457) Putative anticodon-binding d 3e-06
d2e1ba187 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t 6e-07
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]

 Score =  211 bits (537), Expect = 2e-63
 Identities = 93/252 (36%), Positives = 128/252 (50%), Gaps = 32/252 (12%)

Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
            F  +F KK H  V S+ ++P +DPTLLF NAGM  +K +FLG            RA + 
Sbjct: 10  LFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYK-----RATSC 64

Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
           QKC+R  GKHNDL+ VG    HHTFFE           M  N +  G+            
Sbjct: 65  QKCLRVSGKHNDLEQVGYTSRHHTFFE-----------MLGN-FSFGDYFKKEAIEYAWE 112

Query: 274 DRIGGGRNAADLVNQ--DDPAYKADLLPSKLTRLENQRS----MKDNFWEMGETGPCGPC 327
                 +   + +         +A  + ++   + ++R      +DNFW+MG+ GPCGP 
Sbjct: 113 FVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPS 172

Query: 328 SELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFER 387
           SE++ DR            + D   LEIWNLVF+QYNR+ +G L PLP  +ID GMG ER
Sbjct: 173 SEIYVDRGE--------EYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLER 224

Query: 388 LVSVIQDKRSNY 399
           + SV+Q K SN+
Sbjct: 225 IASVLQGKNSNF 236
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 Back     information, alignment and structure
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 Back     information, alignment and structure
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 Back     information, alignment and structure
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 Back     information, alignment and structure
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 Back     information, alignment and structure
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 Back     information, alignment and structure
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query854
d1riqa2236 Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ 100.0
d1riqa2236 Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ 100.0
d1riqa1221 Putative anticodon-binding domain of alanyl-tRNA s 99.97
d1riqa1221 Putative anticodon-binding domain of alanyl-tRNA s 99.67
d2e1ba187 AlaX-M trans-editing enzyme, N-terminal domain {Py 99.17
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=6.7e-87  Score=685.50  Aligned_cols=223  Identities=48%  Similarity=0.879  Sum_probs=195.9

Q ss_pred             CCccccCCCceEeCCCCCCCCCCCcceeeecccccccccccCCcCCCCcccccccccccccceecCCCccCccCcCCCCC
Q psy16314          1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVY   80 (854)
Q Consensus         1 ~~~f~~~~~h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~g~~~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg~~~~   80 (854)
                      |+||+ +|||++||||||||.+|||||||||||+||||||+|.+.|+     ++|++++|||||+||||||||+||+|.|
T Consensus        12 l~FF~-~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~flG~~~p~-----~~r~~~~QkCiR~~gk~nDld~VG~t~r   85 (236)
T d1riqa2          12 LSFFE-KKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRP-----YKRATSCQKCLRVSGKHNDLEQVGYTSR   85 (236)
T ss_dssp             HHHHH-HTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHHHTTSSCCS-----CSEEEEEEEEECEETTEECTTTTTTSSS
T ss_pred             HHHHH-hCCCEEcCCCCcccCCCCCeeeecccchhhhhhhcCccccC-----CCccccccccccccCccchhhhcCCccc
Confidence            58999 69999999999999999999999999999999999999885     5899999999999999999999999999


Q ss_pred             cceeeeecccccccccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhcccccccccc
Q psy16314         81 HHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF  160 (854)
Q Consensus        81 h~t~femlg~~s~g~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~fld~f  160 (854)
                      ||||||||||||||||||+|||         .|||   ||||+                                   .|
T Consensus        86 H~TfFEMLGn~SFgdYfK~eai---------~~aw---e~lt~-----------------------------------~l  118 (236)
T d1riqa2          86 HHTFFEMLGNFSFGDYFKKEAI---------EYAW---EFVTE-----------------------------------VL  118 (236)
T ss_dssp             CCSEEEEEEEEESSSCCHHHHH---------HHHH---HHHHH-----------------------------------TS
T ss_pred             chhhhhhccccccCchhHHHHH---------HHHH---HHHHH-----------------------------------Hh
Confidence            9999999999999999999999         9999   99998                                   78


Q ss_pred             ccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccchhhhccc
Q psy16314        161 KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFE  240 (854)
Q Consensus       161 kk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~wH~Tffe  240 (854)
                                 .||++++           |+|||.+                              |++++++|+    +
T Consensus       119 -----------~l~~~rl-----------~vtv~~~------------------------------D~e~~~~w~----~  142 (236)
T d1riqa2         119 -----------KLPKEKL-----------YVSVYKD------------------------------DEEAYRIWN----E  142 (236)
T ss_dssp             -----------CCCGGGE-----------EEEEETT------------------------------CHHHHHHHH----T
T ss_pred             -----------ccCccce-----------EEEeecC------------------------------cHHHHHHHH----h
Confidence                       9999999           9999987                              888999993    3


Q ss_pred             c--cCCCcccCCCCCcceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhcccccccccccc
Q psy16314        241 I--LPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEM  318 (854)
Q Consensus       241 M--lgn~~i~~f~~~DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~kdNfW~~  318 (854)
                      -  ++++||++++.                                                           +||||+|
T Consensus       143 ~~gi~~~rI~~~~~-----------------------------------------------------------~dNfW~~  163 (236)
T d1riqa2         143 HIGIPSERIWRLGE-----------------------------------------------------------EDNFWQM  163 (236)
T ss_dssp             TTCCCGGGEEEECH-----------------------------------------------------------HHHEEES
T ss_pred             hcCcccccceecCC-----------------------------------------------------------CCCcccc
Confidence            3  45555554444                                                           4555555


Q ss_pred             CCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCCCCchhhhHHhhhCCCCC
Q psy16314        319 GETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSN  398 (854)
Q Consensus       319 G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDTGmGlERl~~ilqg~~Sn  398 (854)
                      |++||||||+|||||++.   .     ..+++|||||||+|||||+|+++|++.|||+++||||||||||++|+||++||
T Consensus       164 g~~GpcGPcsEi~yd~g~---~-----~~~~~r~lEIwNlVFmqy~~~~~G~~~~L~~k~IDTGmGLERi~~vlqg~~s~  235 (236)
T d1riqa2         164 GDVGPCGPSSEIYVDRGE---E-----YEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSN  235 (236)
T ss_dssp             SSSEEEEEEEEEEEECCT---T-----SCHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSSG
T ss_pred             CCCCCCCcceeEEEcccc---c-----cCCCCceeeeeeeeheeeeecCCCccccCCCCcccCCccHHHHHHHHcCCCCC
Confidence            555666666666666422   1     13467999999999999999999999999999999999999999999999999


Q ss_pred             c
Q psy16314        399 Y  399 (854)
Q Consensus       399 Y  399 (854)
                      |
T Consensus       236 y  236 (236)
T d1riqa2         236 F  236 (236)
T ss_dssp             G
T ss_pred             C
Confidence            8
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure