Psyllid ID: psy16398

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------
MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKKSAAGTPTQASHRNDVKSGVNSFSTTSSAFSAVSGADLEESLKKQALAEEEAILNQYKAKVSSPTSSMPSNAASTNPFLASPTQPIVDLFGSAPASVEPVQTSKPSDDLLQLGNPFVDDFTGAAAPGSQPPVNNAWTSNGFNMNTTSVQQDSFVSDKAFSSVFGDLDPSKTMPPPSTVPGALGANYRPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTPLMGSPRQVPSGQPPVASTQLDPFGSL
cccccHHHHHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccEEEEEEEccccHHHHHHHHHHcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MAGQTINDRLLAAKHSLAGQGLAKAVCKATteeligpkkkHLDYLLHctneanvsiPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASsncslqlgnfldksgihgydmtpFIHRYSRYINEKSLSYRTVAFDfckvkrgkedgllrtmpankllksLPVLQSQIDALLefdcnnsdlrngviNGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAEnvgidkgdipdltkapSSLLEALEQHLATLegkksaagtptqashrndvksgvnsfsttssafsavsgaDLEESLKKQALAEEEAILNQYKakvssptssmpsnaastnpflasptqpivdlfgsapasvepvqtskpsddllqlgnpfvddftgaaapgsqppvnnawtsngfnmnttsvqqdsfvsdkafssvfgdldpsktmpppstvpgalganyrpmgqsmtpfytdnafpaqpvgaprmpmmpssggtplmgsprqvpsgqppvastqldpfgsl
MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAenvgidkgdipdLTKAPSSLLEALEQHLATLEGKKsaagtptqashrndvksgvnSFSTTSSAFSAVSGADLEESLKKQALAEEEAILNQYKAKVSSPTSSMPSNAASTNPFLASPTQPIVDLFGSAPASVEPVQTSKPSDDLLQLGNPFVDDFTGAAAPGSQPPVNNAWTSNGFNMNTTSVQQDSFVSDKAFSSVFgdldpsktmpppSTVPGALGANYRPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTPLMGSPRQVPSgqppvastqldpfgsl
MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKKSAAGTPTQASHRNDVKSGVNsfsttssafsaVSGADLEESLKKQALAEEEAILNQYKAKVSSPTSSMPSNAASTNPFLASPTQPIVDLFGSAPASVEPVQTSKPSDDLLQLGNPFVDDFTGAAAPGSQPPVNNAWTSNGFNMNTTSVQQDSFVSDKAFSSVFGDLDPSKTMPPPSTVPGALGANYRPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTPLMGSPRQVPSGQPPVASTQLDPFGSL
**********LAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIP*******************************************************************************************************************************************************************************************************************************************************************************
***********AAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFC**************PANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLA********************************************************************************************************************************************************************************************************************************************************P****
MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLE***********************SFSTTSSAFSAVSGADLEESLKKQALAEEEAILNQYK***************STNPFLASPTQPIVDLFGSAP************DDLLQLGNPFVDDFTGAAAPGSQPPVNNAWTSNGFNMNTTSVQQDSFVSDKAFSSVFGDLDPSKTMPPPSTVPGALGANYRPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTPLM**************STQLDPFGSL
****TINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVK******LLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLE***********************************************ALAEEEAILNQYK**********************************************PSDDLLQLGNPFVDDFTGAAAPGSQPPVNNAWTSNGFNMNTTSVQQDSFVSDKAFSSVFGDL*****************ANYRPMGQSM*****DNAFPAQPVGAPRMP***********************************
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MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKKSAAGTPTQASHRNDVKSGVNSFSTTSSAFSAVSGADLEESLKKQALAEEEAILNQYKAKVSSPTSSMPSNAASTNPFLASPTQPIVDLFGSAPASVEPVQTSKPSDDLLQLGNPFVDDFTGAAAPGSQPPVNNAWTSNGFNMNTTSVQQDSFVSDKAFSSVFGDLDPSKTMPPPSTVPGALGANYRPMGQSMTPFYTDNAFPAQPVGAPRMPMMPSSGGTPLMGSPRQVPSGQPPVASTQLDPFGSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query537 2.2.26 [Sep-21-2011]
Q9VI75468 Phosphatidylinositol-bind no N/A 0.746 0.856 0.699 1e-162
Q13492 652 Phosphatidylinositol-bind no N/A 0.726 0.598 0.573 1e-128
Q7M6Y3 660 Phosphatidylinositol-bind no N/A 0.726 0.590 0.573 1e-128
O55012 640 Phosphatidylinositol-bind yes N/A 0.761 0.639 0.555 1e-128
O60641 907 Clathrin coat assembly pr no N/A 0.655 0.388 0.578 1e-125
Q9XZI6586 Phosphatidylinositol-bind no N/A 0.739 0.677 0.561 1e-124
Q61548 901 Clathrin coat assembly pr no N/A 0.538 0.320 0.689 1e-122
Q05140 915 Clathrin coat assembly pr no N/A 0.538 0.315 0.686 1e-122
O60167 649 ENTH domain-containing pr yes N/A 0.476 0.394 0.279 5e-26
P53309568 Clathrin coat assembly pr yes N/A 0.493 0.466 0.287 4e-24
>sp|Q9VI75|PICA_DROME Phosphatidylinositol-binding clathrin assembly protein LAP OS=Drosophila melanogaster GN=lap PE=1 SV=3 Back     alignment and function desciption
 Score =  572 bits (1475), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 300/429 (69%), Positives = 340/429 (79%), Gaps = 28/429 (6%)

Query: 1   MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
           MAGQTINDRLLAA+HSLAGQGLAK+VCKATTEE IGPKKKHLDYL+HCTNE NVSIP LA
Sbjct: 3   MAGQTINDRLLAARHSLAGQGLAKSVCKATTEECIGPKKKHLDYLVHCTNEPNVSIPHLA 62

Query: 61  TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKS------- 113
            LLIER+QN++ VVV+K+LIT HHLM YGNERF QYLASSN +  L +FLDK        
Sbjct: 63  NLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGM 122

Query: 114 ----GIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSL 169
               G  GYDM+PFI RY++Y+NEKSLSYR +AFDFCKVKRGKE+G LR+M A KLLK+L
Sbjct: 123 GVPGGRMGYDMSPFIRRYAKYLNEKSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTL 182

Query: 170 PVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKK 229
           PVLQ+Q+DALLEFDC ++DL NGVIN +FMLLFRDLIRLFA YND IINLLEKYFDMNKK
Sbjct: 183 PVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKK 242

Query: 230 QCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGK 289
             ++ALDLYKKFL+RMDRV EFLKVAENVGIDKGDIPDLTKAPSSLL+ALEQHLATLEG+
Sbjct: 243 HARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKAPSSLLDALEQHLATLEGR 302

Query: 290 K-SAAGTPTQASHRNDVKSGVNSFSTTSSAFSAVSGADLEESLKKQALAEEEAILNQYKA 348
           K SAA TPTQ+S      S     +  SS F   +G D  E LK Q LAEEEA +NQYK+
Sbjct: 303 KVSAANTPTQSS------SSAFGTAAASSKFDTTNGID--EQLKAQVLAEEEAAMNQYKS 354

Query: 349 KVSSPTSSMPSNAAS--TNPFLASP-----TQPIVDLFG-SAPASVEPVQTSKPSDDLLQ 400
           KVSSPTSS  + A++  TNPFL+SP      QPIVDLFG ++         +K SDDLLQ
Sbjct: 355 KVSSPTSSGAAGASAALTNPFLSSPPAAQAGQPIVDLFGAASAQPAAAAAATKASDDLLQ 414

Query: 401 LGNPFVDDF 409
           LGNPF D F
Sbjct: 415 LGNPFADMF 423
Assembly protein recruiting clathrin and adaptor protein complex 2 (AP2) to cell membranes at sites of coated-pit formation and clathrin-vesicle assembly. May be required to determine the amount of membrane to be recycled, possibly by regulating the size of the clathrin cage. Involved in AP2-dependent clathrin-mediated endocytosis at the neuromuscular junction.
Drosophila melanogaster (taxid: 7227)
>sp|Q13492|PICAL_HUMAN Phosphatidylinositol-binding clathrin assembly protein OS=Homo sapiens GN=PICALM PE=1 SV=2 Back     alignment and function description
>sp|Q7M6Y3|PICA_MOUSE Phosphatidylinositol-binding clathrin assembly protein OS=Mus musculus GN=Picalm PE=1 SV=1 Back     alignment and function description
>sp|O55012|PICA_RAT Phosphatidylinositol-binding clathrin assembly protein OS=Rattus norvegicus GN=Picalm PE=1 SV=1 Back     alignment and function description
>sp|O60641|AP180_HUMAN Clathrin coat assembly protein AP180 OS=Homo sapiens GN=SNAP91 PE=1 SV=2 Back     alignment and function description
>sp|Q9XZI6|PICA_CAEEL Phosphatidylinositol-binding clathrin assembly protein unc-11 OS=Caenorhabditis elegans GN=unc-11 PE=1 SV=1 Back     alignment and function description
>sp|Q61548|AP180_MOUSE Clathrin coat assembly protein AP180 OS=Mus musculus GN=Snap91 PE=1 SV=1 Back     alignment and function description
>sp|Q05140|AP180_RAT Clathrin coat assembly protein AP180 OS=Rattus norvegicus GN=Snap91 PE=1 SV=1 Back     alignment and function description
>sp|O60167|YHC3_SCHPO ENTH domain-containing protein C19F8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19F8.03c PE=1 SV=1 Back     alignment and function description
>sp|P53309|AP18B_YEAST Clathrin coat assembly protein AP180B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAP1802 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query537
328708068598 PREDICTED: phosphatidylinositol-binding 0.865 0.777 0.704 0.0
383859270 867 PREDICTED: uncharacterized protein LOC10 0.854 0.529 0.691 0.0
328783831 886 PREDICTED: hypothetical protein LOC40943 0.888 0.538 0.675 0.0
328708074571 PREDICTED: phosphatidylinositol-binding 0.865 0.814 0.694 0.0
350411537 843 PREDICTED: phosphatidylinositol-binding 0.886 0.564 0.673 0.0
328708072587 PREDICTED: phosphatidylinositol-binding 0.865 0.792 0.694 0.0
328708066605 PREDICTED: phosphatidylinositol-binding 0.865 0.768 0.694 0.0
340729540 893 PREDICTED: phosphatidylinositol-binding 0.886 0.533 0.671 0.0
328708070580 PREDICTED: phosphatidylinositol-binding 0.839 0.777 0.690 0.0
242020346533 Phosphatidylinositol-binding clathrin as 0.811 0.818 0.704 0.0
>gi|328708068|ref|XP_003243590.1| PREDICTED: phosphatidylinositol-binding clathrin assembly protein LAP-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/488 (70%), Positives = 399/488 (81%), Gaps = 23/488 (4%)

Query: 1   MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
           MAGQTI DRLLAA+HSLAGQGLAK+VCKATTEELIGPKKKHLDYL+HCTNE NVSIP LA
Sbjct: 1   MAGQTIQDRLLAARHSLAGQGLAKSVCKATTEELIGPKKKHLDYLIHCTNEPNVSIPQLA 60

Query: 61  TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDM 120
            LLIER+QN+S VVVFK+LIT+HHLMCYGNERFTQYLASSN S QL NFLDKS + GYDM
Sbjct: 61  NLLIERSQNASWVVVFKSLITVHHLMCYGNERFTQYLASSNSSFQLSNFLDKSSLQGYDM 120

Query: 121 TPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSLPVLQSQIDALL 180
           +PFI RYS+Y+NEK+LSYRTVAFDFCKVKR KEDG+LRTM + KLLK+LPVLQSQ+DALL
Sbjct: 121 SPFIRRYSKYLNEKALSYRTVAFDFCKVKRSKEDGVLRTMNSEKLLKTLPVLQSQLDALL 180

Query: 181 EFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKK 240
           EFDC+ +DL NGVIN AFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQC++ALDLYKK
Sbjct: 181 EFDCSAADLTNGVINMAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCRDALDLYKK 240

Query: 241 FLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGKKSAAGTPTQA- 299
           FLIRMDRV EFLKVAENVGIDKG+IPDLTKAPSSLL+ALEQHLA++EGKKSAA TPTQA 
Sbjct: 241 FLIRMDRVGEFLKVAENVGIDKGEIPDLTKAPSSLLDALEQHLASIEGKKSAANTPTQAT 300

Query: 300 -SHRNDVKSGVNSFSTTSSAFSAVS-GAD-LEESLKKQALAEEEAILNQYKAKVSSPTSS 356
            +HR DVK+GV++ S+TSS+F  ++  AD +EESLK+  LAEEEA+LNQYKAKV+SP + 
Sbjct: 301 STHRTDVKTGVSALSSTSSSFGTIAQQADGVEESLKQAVLAEEEAVLNQYKAKVNSPVNG 360

Query: 357 MPSNAASTNPFLASPTQPIVDLFGSAPASVEPVQTSKPSDDLLQLGNPFVDDFTGAAAPG 416
             + A+  NPFL S ++PIVDLF S PA      T K SDDLLQL NPF D F+     G
Sbjct: 361 --TIASVNNPFLVS-SEPIVDLF-SCPAPATQTST-KASDDLLQLSNPFADMFS-TPMTG 414

Query: 417 SQ--------PPVNNAWTSNGFNMNTTSVQQDSFVSDKAFSSVFGDLDPSKTMPPPSTVP 468
           SQ         P+ N W SNGFN N+     ++FV DK+F+SVFG  + +++ P P+   
Sbjct: 415 SQTNATNDISTPLANNWMSNGFNTNS-----NAFVDDKSFTSVFGQPESNQSCPAPTATG 469

Query: 469 GALGANYR 476
            +   N +
Sbjct: 470 ASDSGNKK 477

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383859270|ref|XP_003705118.1| PREDICTED: uncharacterized protein LOC100882926 [Megachile rotundata] Back     alignment and taxonomy information
>gi|328783831|ref|XP_392948.4| PREDICTED: hypothetical protein LOC409435 [Apis mellifera] Back     alignment and taxonomy information
>gi|328708074|ref|XP_003243593.1| PREDICTED: phosphatidylinositol-binding clathrin assembly protein LAP-like isoform 5 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|350411537|ref|XP_003489381.1| PREDICTED: phosphatidylinositol-binding clathrin assembly protein-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328708072|ref|XP_003243592.1| PREDICTED: phosphatidylinositol-binding clathrin assembly protein LAP-like isoform 4 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328708066|ref|XP_001946167.2| PREDICTED: phosphatidylinositol-binding clathrin assembly protein LAP-like isoform 6 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|340729540|ref|XP_003403058.1| PREDICTED: phosphatidylinositol-binding clathrin assembly protein-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|328708070|ref|XP_003243591.1| PREDICTED: phosphatidylinositol-binding clathrin assembly protein LAP-like isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242020346|ref|XP_002430616.1| Phosphatidylinositol-binding clathrin assembly protein LAP, putative [Pediculus humanus corporis] gi|212515788|gb|EEB17878.1| Phosphatidylinositol-binding clathrin assembly protein LAP, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query537
FB|FBgn0086372468 lap "like-AP180" [Drosophila m 0.761 0.873 0.689 2.4e-147
UNIPROTKB|Q9U6M6 751 AP180 "Clathrin assembly prote 0.729 0.521 0.473 2.4e-132
UNIPROTKB|J9NZJ6 636 PICALM "Uncharacterized protei 0.817 0.690 0.539 4.5e-122
UNIPROTKB|E9PTD2610 Picalm "Phosphatidylinositol-b 0.817 0.719 0.539 8.4e-121
UNIPROTKB|E2RCL7 722 PICALM "Uncharacterized protei 0.733 0.545 0.574 2e-119
RGD|621054 640 Picalm "phosphatidylinositol b 0.767 0.643 0.556 4.1e-119
UNIPROTKB|Q13492 652 PICALM "Phosphatidylinositol-b 0.819 0.674 0.534 6.7e-119
MGI|MGI:2385902 660 Picalm "phosphatidylinositol b 0.731 0.595 0.575 1.4e-118
UNIPROTKB|F1LR19 647 Picalm "Phosphatidylinositol-b 0.767 0.636 0.556 1.8e-118
ZFIN|ZDB-GENE-030131-6795 667 picalml "phosphatidylinositol 0.800 0.644 0.540 2e-117
FB|FBgn0086372 lap "like-AP180" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1439 (511.6 bits), Expect = 2.4e-147, P = 2.4e-147
 Identities = 304/441 (68%), Positives = 343/441 (77%)

Query:     1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
             MAGQTINDRLLAA+HSLAGQGLAK+VCKATTEE IGPKKKHLDYL+HCTNE NVSIP LA
Sbjct:     3 MAGQTINDRLLAARHSLAGQGLAKSVCKATTEECIGPKKKHLDYLVHCTNEPNVSIPHLA 62

Query:    61 TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIH---- 116
              LLIER+QN++ VVV+K+LIT HHLM YGNERF QYLASSN +  L +FLDK  +     
Sbjct:    63 NLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGM 122

Query:   117 -------GYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSL 169
                    GYDM+PFI RY++Y+NEKSLSYR +AFDFCKVKRGKE+G LR+M A KLLK+L
Sbjct:   123 GVPGGRMGYDMSPFIRRYAKYLNEKSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTL 182

Query:   170 PVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKK 229
             PVLQ+Q+DALLEFDC ++DL NGVIN +FMLLFRDLIRLFA YND IINLLEKYFDMNKK
Sbjct:   183 PVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKK 242

Query:   230 QCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATLEGK 289
               ++ALDLYKKFL+RMDRV EFLKVAENVGIDKGDIPDLTKAPSSLL+ALEQHLATLEG+
Sbjct:   243 HARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKAPSSLLDALEQHLATLEGR 302

Query:   290 K-SAAGTPTQASHRNDVKSGVNXXXXXXXXXXXVSGADLEESLKKQALAEEEAILNQYKA 348
             K SAA TPTQ+S      S               +G D  E LK Q LAEEEA +NQYK+
Sbjct:   303 KVSAANTPTQSS------SSAFGTAAASSKFDTTNGID--EQLKAQVLAEEEAAMNQYKS 354

Query:   349 KVSSPTSS--MPSNAASTNPFLASPT-----QPIVDLFGSAPAS-VEPVQTSKPSDDLLQ 400
             KVSSPTSS    ++AA TNPFL+SP      QPIVDLFG+A A        +K SDDLLQ
Sbjct:   355 KVSSPTSSGAAGASAALTNPFLSSPPAAQAGQPIVDLFGAASAQPAAAAAATKASDDLLQ 414

Query:   401 LGNPFVDDFT----GAAAPGS 417
             LGNPF D F     GAAA G+
Sbjct:   415 LGNPFADMFDASGGGAAAVGA 435
GO:0030131 "clathrin adaptor complex" evidence=ISS;NAS
GO:0005905 "coated pit" evidence=IDA
GO:0048488 "synaptic vesicle endocytosis" evidence=IMP
GO:0006898 "receptor-mediated endocytosis" evidence=IDA
GO:0008021 "synaptic vesicle" evidence=TAS
GO:0016183 "synaptic vesicle coating" evidence=TAS
GO:0007269 "neurotransmitter secretion" evidence=NAS
GO:0030276 "clathrin binding" evidence=ISS;NAS
GO:0048489 "synaptic vesicle transport" evidence=TAS
GO:0007268 "synaptic transmission" evidence=IMP
GO:0042331 "phototaxis" evidence=IMP
GO:0007270 "neuron-neuron synaptic transmission" evidence=IMP
GO:0048268 "clathrin coat assembly" evidence=IEA
GO:0030118 "clathrin coat" evidence=IEA
GO:0005545 "1-phosphatidylinositol binding" evidence=ISS
UNIPROTKB|Q9U6M6 AP180 "Clathrin assembly protein AP180" [Doryteuthis pealeii (taxid:1051067)] Back     alignment and assigned GO terms
UNIPROTKB|J9NZJ6 PICALM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E9PTD2 Picalm "Phosphatidylinositol-binding clathrin assembly protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCL7 PICALM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|621054 Picalm "phosphatidylinositol binding clathrin assembly protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q13492 PICALM "Phosphatidylinositol-binding clathrin assembly protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2385902 Picalm "phosphatidylinositol binding clathrin assembly protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1LR19 Picalm "Phosphatidylinositol-binding clathrin assembly protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6795 picalml "phosphatidylinositol binding clathrin assembly protein, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O55012PICA_RATNo assigned EC number0.55520.76160.6390yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query537
pfam07651278 pfam07651, ANTH, ANTH domain 5e-78
cd03564117 cd03564, ANTH_AP180_CALM, ANTH domain family; comp 3e-46
smart00273127 smart00273, ENTH, Epsin N-terminal homology (ENTH) 3e-34
cd00197115 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain 1e-25
pfam01417124 pfam01417, ENTH, ENTH domain 3e-12
>gnl|CDD|219498 pfam07651, ANTH, ANTH domain Back     alignment and domain information 
 Score =  246 bits (629), Expect = 5e-78
 Identities = 86/279 (30%), Positives = 136/279 (48%), Gaps = 13/279 (4%)

Query: 19  GQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSS-VVVFK 77
              L  AV KAT+ +   P KK     +     +   +  L   L  R   + + VV  K
Sbjct: 1   DSDLEVAVVKATSHD-EVPPKKKHVREILVGTSSPAKVAALFWALSRRLPLTRNWVVALK 59

Query: 78  ALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDK---SGIHGYDMTPFIHRYSRYINEK 134
           ALI +H L+  G+    Q L  +   +     +     S    +D   FI  Y++Y++E+
Sbjct: 60  ALILVHKLLREGHPSVLQELLRARRRISSLLRISSFDDSMSLTWDYGAFIRAYAKYLDER 119

Query: 135 SLSYRTVAFD--FCKVKRG-----KEDGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNS 187
              +R +  D  F +V+ G      +     TM    LL  +P LQ  +DALL+     +
Sbjct: 120 LDFHRKLPRDPTFERVEYGSLRAVGDPNSRYTMSMEDLLDIIPKLQKLLDALLKCKPTGN 179

Query: 188 DLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDR 247
            L N  I  A +LL ++   L+   N+ IINLLEK+F+M+K     AL +YK+F+ + +R
Sbjct: 180 ALTNECIIAALILLIKESFGLYGAINEGIINLLEKFFEMSKPDADAALGIYKRFVSQFER 239

Query: 248 VAEFLKVAENVGIDKG-DIPDLTKAPSSLLEALEQHLAT 285
           + EF +V +N+G  +  +IP L   P +LL+ALE+HL  
Sbjct: 240 LKEFYEVCKNLGYFRSLEIPKLPHIPPNLLDALEEHLRD 278

AP180 is an endocytotic accessory proteins that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats. Length = 278
>gnl|CDD|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>gnl|CDD|238118 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>gnl|CDD|216488 pfam01417, ENTH, ENTH domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 537
KOG0251|consensus491 100.0
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 100.0
KOG0980|consensus 980 100.0
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 99.97
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 99.94
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 99.48
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.45
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 99.27
KOG2056|consensus336 99.04
KOG2057|consensus499 98.68
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 98.38
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 96.49
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 96.29
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 96.22
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 96.16
cd03561133 VHS VHS domain family; The VHS domain is present i 96.15
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 96.05
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 95.64
KOG0414|consensus 1251 90.63
KOG1087|consensus470 89.53
KOG2199|consensus462 84.04
>KOG0251|consensus Back     alignment and domain information 
Probab=100.00  E-value=9.3e-70  Score=583.12  Aligned_cols=291  Identities=45%  Similarity=0.662  Sum_probs=278.9

Q ss_pred             CCCccHHHHHHHHhhhcC--ChhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhC-CCCchhhHH
Q psy16398          1 MAGQTINDRLLAAKHSLA--GQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQ-NSSSVVVFK   77 (537)
Q Consensus         1 ~~g~s~~dr~~aa~~sl~--gs~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~-tsnWiVa~K   77 (537)
                      ++++.|+||++++++++.  +.++++||+|||+|++.|||+|||++|+.+|...+++++.|+++|.+|++ ++||+||+|
T Consensus         1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~TrnW~VAlK   80 (491)
T KOG0251|consen    1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKTRNWTVALK   80 (491)
T ss_pred             CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCCcceeehHH
Confidence            578999999999999998  89999999999999999999999999999999999999999999999975 669999999


Q ss_pred             HHHHHHHHhhcCCHhHHHHHHhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHhhhhhcccccccccCCCCCCcc
Q psy16398         78 ALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLL  157 (537)
Q Consensus        78 aLIlLHrLLrdG~~~flq~L~~~~~if~LsnF~D~ss~~g~d~s~fIR~YakYLdeRl~~fr~~~~Df~~~k~g~~~~~l  157 (537)
                      +|||+||||++|+++|.+++.+.+++|+|++|+|++++.+|||+.|||+|++||+||+.+|+.+++|+++.+++.....+
T Consensus        81 sLIliH~ll~~G~~~f~~~l~~~~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~~~k~~~  160 (491)
T KOG0251|consen   81 ALILIHRLLKEGDPSFEQELLSRNLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRGKEKTKD  160 (491)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHhcccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCccccccc
Confidence            99999999999999999999888899999999999988899999999999999999999999999999988777666777


Q ss_pred             cCCC-HHHHHhhHHHHHHHHHHHHccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy16398        158 RTMP-ANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKEALD  236 (537)
Q Consensus       158 r~ms-vE~LL~~l~~LQ~LIdaLL~c~~~~~~l~N~li~~Af~LLVkDs~~LY~~inegIi~LLE~fFeM~k~da~~aLe  236 (537)
                      +++. .+.+|+.++.||.|||++|+|++.+.+++|+||++||.|||+|+|+||.+||+|||+|||+||||+++||+++|+
T Consensus       161 ~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekffem~~~~a~~al~  240 (491)
T KOG0251|consen  161 RSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFFEMSKHDAIKALD  240 (491)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            8888 889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccc-CCCCCCCCCCchHHHHHHHHhhhhhcCCC
Q psy16398        237 LYKKFLIRMDRVAEFLKVAENVGIDK-GDIPDLTKAPSSLLEALEQHLATLEGKKS  291 (537)
Q Consensus       237 IYkRF~~Q~e~L~eFy~~ck~lg~~k-i~IP~L~~~P~slL~aLEeyL~~~E~kk~  291 (537)
                      |||||.+|+++|.+||++||.+|+.+ .+||+|+++|.++|++|||||++.++.+.
T Consensus       241 iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~  296 (491)
T KOG0251|consen  241 IYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKA  296 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccccc
Confidence            99999999999999999999999987 69999999999999999999999876654

>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG0980|consensus Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>KOG2056|consensus Back     alignment and domain information
>KOG2057|consensus Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>KOG0414|consensus Back     alignment and domain information
>KOG1087|consensus Back     alignment and domain information
>KOG2199|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query537
1hx8_A299 Crystal Structure Of N-Terminal Domain Of Drosophil 1e-135
1hf8_A289 Calm-N N-Terminal Domain Of Clathrin Assembly Lymph 1e-124
3zyk_A296 Structure Of Calm (Picalm) Anth Domain Length = 296 1e-124
3zym_A310 Structure Of Calm (Picalm) In Complex With Vamp8 Le 1e-111
3zyl_A271 Structure Of A Truncated Calm (Picalm) Anth Domain 1e-111
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180 Length = 299 Back     alignment and structure 
Iteration: 1

 Score =  478 bits (1229), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 230/297 (77%), Positives = 257/297 (86%), Gaps = 11/297 (3%)
Query: 1   MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
           MAGQTINDRLLAA+HSLAGQGLAK+VCKATTEE IGPKKKHLDYL+HC NE NVSIP LA
Sbjct: 3   MAGQTINDRLLAARHSLAGQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLA 62
Query: 61  TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKS------- 113
            LLIER+QN++ VVV+K+LIT HHLM YGNERF QYLASSN +  L +FLDK        
Sbjct: 63  NLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGM 122
Query: 114 ----GIHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSL 169
               G  GYDM+PFI RY++Y+NEKSLSYR +AFDFCKVKRGKE+G LR+M A KLLK+L
Sbjct: 123 GVPGGRMGYDMSPFIRRYAKYLNEKSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTL 182
Query: 170 PVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKK 229
           PVLQ+Q+DALLEFDC ++DL NGVIN +FMLLFRDLIRLFA YND IINLLEKYFDMNKK
Sbjct: 183 PVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKK 242
Query: 230 QCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATL 286
             ++ALDLYKKFL+RMDRV EFLKVAENVGIDKGDIPDLTKAPSSLL+ALEQHLATL
Sbjct: 243 HARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKAPSSLLDALEQHLATL 299
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein Length = 289 Back     alignment and structure
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain Length = 296 Back     alignment and structure
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8 Length = 310 Back     alignment and structure
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query537
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 6e-98
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 8e-88
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 8e-87
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 6e-10
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 2e-09
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 5e-06
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 6e-04
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299 Back     alignment and structure
 Score =  297 bits (762), Expect = 6e-98
 Identities = 229/297 (77%), Positives = 257/297 (86%), Gaps = 11/297 (3%)

Query: 1   MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLA 60
           MAGQTINDRLLAA+HSLAGQGLAK+VCKATTEE IGPKKKHLDYL+HC NE NVSIP LA
Sbjct: 3   MAGQTINDRLLAARHSLAGQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLA 62

Query: 61  TLLIERTQNSSSVVVFKALITIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSGI----- 115
            LLIER+QN++ VVV+K+LIT HHLM YGNERF QYLASSN +  L +FLDK  +     
Sbjct: 63  NLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGM 122

Query: 116 ------HGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVKRGKEDGLLRTMPANKLLKSL 169
                  GYDM+PFI RY++Y+NEKSLSYR +AFDFCKVKRGKE+G LR+M A KLLK+L
Sbjct: 123 GVPGGRMGYDMSPFIRRYAKYLNEKSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTL 182

Query: 170 PVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKK 229
           PVLQ+Q+DALLEFDC ++DL NGVIN +FMLLFRDLIRLFA YND IINLLEKYFDMNKK
Sbjct: 183 PVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKK 242

Query: 230 QCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATL 286
             ++ALDLYKKFL+RMDRV EFLKVAENVGIDKGDIPDLTKAPSSLL+ALEQHLATL
Sbjct: 243 HARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKAPSSLLDALEQHLATL 299
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271 Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148 Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Length = 176 Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Length = 150 Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Length = 144 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query537
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 100.0
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 100.0
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 100.0
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 99.63
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 99.6
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 99.51
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 99.39
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 98.74
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 96.61
3g2s_A149 C-terminal fragment of sortilin-related receptor; 96.55
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 96.32
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 96.21
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 96.02
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 96.01
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 96.01
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 95.89
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 95.85
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
Probab=100.00  E-value=2e-77  Score=610.51  Aligned_cols=286  Identities=80%  Similarity=1.229  Sum_probs=253.7

Q ss_pred             CCCccHHHHHHHHhhhcCChhHHHHHHhhccCCCCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhhCCCCchhhHHHHH
Q psy16398          1 MAGQTINDRLLAAKHSLAGQGLAKAVCKATTEELIGPKKKHLDYLLHCTNEANVSIPDLATLLIERTQNSSSVVVFKALI   80 (537)
Q Consensus         1 ~~g~s~~dr~~aa~~sl~gs~lekAV~KATs~de~PPKeKHVr~II~~T~~~~~si~~i~~~L~~R~~tsnWiVa~KaLI   80 (537)
                      |+||+|+||+.|+||+.+|++++++|+|||+|+++|||+|||++||.+||++++++.+++++|++|++++||+|+||+||
T Consensus         3 ~~~~~~~~~~~a~k~~~~~~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~~~~~w~va~K~Li   82 (299)
T 1hx8_A            3 MAGQTINDRLLAARHSLAGQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNANWVVVYKSLI   82 (299)
T ss_dssp             -------------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             CchHHHHHHHHHHhhccchhHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCcHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCHhHHHHHHhcCCccccccccccCC-----------CCCCCcchHHHHHHHHHHHHHhhhhhccccccccc
Q psy16398         81 TIHHLMCYGNERFTQYLASSNCSLQLGNFLDKSG-----------IHGYDMTPFIHRYSRYINEKSLSYRTVAFDFCKVK  149 (537)
Q Consensus        81 lLHrLLrdG~~~flq~L~~~~~if~LsnF~D~ss-----------~~g~d~s~fIR~YakYLdeRl~~fr~~~~Df~~~k  149 (537)
                      ++|||||||||+|++++++++++|+|++|+|.++           ..+|||+.|||+|++||++|+.+||.+++||++.+
T Consensus        83 vlH~llreG~~~~~~~l~~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r~~~f~~~~~d~~~~~  162 (299)
T 1hx8_A           83 TTHHLMAYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKSLSYRAMAFDFCKVK  162 (299)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGC-
T ss_pred             HHHHHHhcCCHHHHHHHHhCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence            9999999999999999988889999999999765           34678999999999999999889999999999877


Q ss_pred             CCCCCCcccCCCHHHHHhhHHHHHHHHHHHHccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q psy16398        150 RGKEDGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKK  229 (537)
Q Consensus       150 ~g~~~~~lr~msvE~LL~~l~~LQ~LIdaLL~c~~~~~~l~N~li~~Af~LLVkDs~~LY~~inegIi~LLE~fFeM~k~  229 (537)
                      ++.+++++++|++|+||++++.||+|||++++|++.+.+.+|+|+++||++||+|+++||+++|+||++|||+||+|++.
T Consensus       163 ~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~~lY~~i~~gi~~lLe~~fem~~~  242 (299)
T 1hx8_A          163 RGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKK  242 (299)
T ss_dssp             ----CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSH
T ss_pred             cCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            77778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCchHHHHHHHHhhhh
Q psy16398        230 QCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLATL  286 (537)
Q Consensus       230 da~~aLeIYkRF~~Q~e~L~eFy~~ck~lg~~ki~IP~L~~~P~slL~aLEeyL~~~  286 (537)
                      ||++||+||+||.+|+++|++||++|+++||++++||+|+++|++|+++|||||+++
T Consensus       243 d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~~~iP~L~~~p~~ll~~Lee~l~~~  299 (299)
T 1hx8_A          243 HARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKAPSSLLDALEQHLATL  299 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSCCCCCCCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCCCCCCCCCCCCHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999988999999999999999999999863
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 537
d1hx8a1133 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosop 4e-56
d1hf8a1132 a.7.8.2 (A:150-281) Clathrin assembly lymphoid mye 1e-54
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 3e-46
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 7e-43
d1eyha_144 a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T 4e-19
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 133 Back     information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  182 bits (463), Expect = 4e-56
 Identities = 110/133 (82%), Positives = 122/133 (91%)

Query: 154 DGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYN 213
           +G LR+M A KLLK+LPVLQ+Q+DALLEFDC ++DL NGVIN +FMLLFRDLIRLFA YN
Sbjct: 1   EGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYN 60

Query: 214 DSIINLLEKYFDMNKKQCKEALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPS 273
           D IINLLEKYFDMNKK  ++ALDLYKKFL+RMDRV EFLKVAENVGIDKGDIPDLTKAPS
Sbjct: 61  DGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKAPS 120

Query: 274 SLLEALEQHLATL 286
           SLL+ALEQHLATL
Sbjct: 121 SLLDALEQHLATL 133
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query537
d1hx8a1133 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 100.0
d1hf8a1132 Clathrin assembly lymphoid myeloid leukaemia prote 100.0
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 100.0
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 100.0
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.82
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 96.36
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 96.35
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 95.92
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 95.79
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 95.37
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=2.7e-38  Score=285.68  Aligned_cols=132  Identities=83%  Similarity=1.244  Sum_probs=129.5

Q ss_pred             CCcccCCCHHHHHhhHHHHHHHHHHHHccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q psy16398        154 DGLLRTMPANKLLKSLPVLQSQIDALLEFDCNNSDLRNGVINGAFMLLFRDLIRLFAGYNDSIINLLEKYFDMNKKQCKE  233 (537)
Q Consensus       154 ~~~lr~msvE~LL~~l~~LQ~LIdaLL~c~~~~~~l~N~li~~Af~LLVkDs~~LY~~inegIi~LLE~fFeM~k~da~~  233 (537)
                      ++.+|+|++++||++++.+|+|||+|++|+|.+.+++|+|+++||.+||+||++||.++|+|||||||+||||++.||++
T Consensus         1 ~~~lr~m~~~~LL~~l~~lQ~lld~Ll~c~p~~~~~~n~vi~~A~~llvkds~~lY~~inegiinLLd~fFem~k~da~~   80 (133)
T d1hx8a1           1 EGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARD   80 (133)
T ss_dssp             CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred             CchhhcCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCchHHHHHHHHhhh
Q psy16398        234 ALDLYKKFLIRMDRVAEFLKVAENVGIDKGDIPDLTKAPSSLLEALEQHLAT  285 (537)
Q Consensus       234 aLeIYkRF~~Q~e~L~eFy~~ck~lg~~ki~IP~L~~~P~slL~aLEeyL~~  285 (537)
                      ||+|||||.+|+++|.+||++||++|+++.+||+|+++|++++++|||||++
T Consensus        81 al~iyk~~~~q~e~L~~f~~~ck~~g~~r~e~P~l~~~p~sll~~LEe~l~~  132 (133)
T d1hx8a1          81 ALDLYKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKAPSSLLDALEQHLAT  132 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCccccCCCCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999998899999999999999999999986
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure