Psyllid ID: psy16471

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
MSAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEEEEEEEEEEEcccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHcccccccccccEEEccccHHHHHHHHHHHHHcccccccccccccEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEcccHHEHHcccHHHHHHccccccccccccEEEEEccccHHHHHHHHHHHHccccccccccccccEEEEEcccccccccccccHHHHHHHHccccccccccccEEEEccc
Coil and Loop (DISEMBL)
msamevdteenvelptssttkgekkrfdvKKWNAVALWAWDIVVDNCAICRNHIMDLCIECqanqasttseectvawgvcnhafhfhcisrNHIMDLCIECqanqasttseectvawgvcnhafhFHCISRwlktrqvcpldnrewefqkygh
Flexible Loop (DISEMBL)
msamevdteenvelptssttkgekkrfdvKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREwefqkygh
Low Complexity Region (SEG)
MSAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
Disordered region (IsUnstruct)
**************************FDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF*****
Disordered Region (DISOPRED)
*****************************KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG*
Disordered Region (DISEMBL)
************************KRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
Disordered Region (DISPRO)
***********************KKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
Q9W5E1	108	RING-box protein 1A OS=Dr	yes	N/A	0.705	1.0	0.653	2e-46
Q8QG64	108	RING-box protein 1 OS=Sal	N/A	N/A	0.692	0.981	0.618	5e-45
P62878	108	E3 ubiquitin-protein liga	yes	N/A	0.692	0.981	0.618	1e-44
P62877	108	E3 ubiquitin-protein liga	yes	N/A	0.692	0.981	0.618	1e-44
Q54K33	104	RING-box protein 1 OS=Dic	yes	N/A	0.640	0.942	0.608	5e-41
Q940X7	118	RING-box protein 1a OS=Ar	yes	N/A	0.594	0.771	0.641	2e-40
Q23457	110	RING-box protein 1 OS=Cae	yes	N/A	0.718	1.0	0.568	5e-39
Q9M2B0	115	RING-box protein 1b OS=Ar	no	N/A	0.581	0.773	0.635	8e-38
O13959	107	RING-box protein pip1 OS=	yes	N/A	0.673	0.962	0.533	5e-36
Q9NHX0	122	RING-box protein 1B OS=Dr	no	N/A	0.686	0.860	0.466	7e-29

>sp|Q9W5E1|RBX1A_DROME RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1

 Score =  184 bits (467), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/150 (65%), Positives = 105/150 (70%), Gaps = 42/150 (28%)

Query: 4   MEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 63
           MEVD E+  E+P+SS+ KG+KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA
Sbjct: 1   MEVD-EDGYEVPSSSS-KGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 58

Query: 64  NQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHA 123
           NQAS TSEECTVAWGVCNHAFHFHCI                                  
Sbjct: 59  NQASATSEECTVAWGVCNHAFHFHCI---------------------------------- 84

Query: 124 FHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                 SRWLKTRQVCPLDNREW+FQKYGH
Sbjct: 85  ------SRWLKTRQVCPLDNREWDFQKYGH 108

Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme to the complex and brings it into close proximity to the substrate. Required for the specific SCF-dependent proteolysis of CI, but not that of ARM, suggesting that it also participates in the selection of substrates inside the SCF complex.
Drosophila melanogaster (taxid: 7227)

>sp|Q8QG64|RBX1_SALSA RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2

 Score =  179 bits (455), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 101/152 (66%), Gaps = 46/152 (30%)

Query: 2   SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
           +AM+VDT      P+++ +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 3   AAMDVDT------PSATNSGASKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56

Query: 62  QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
           QANQAS TSEECTVAWGVCNHAFHFHCI                                
Sbjct: 57  QANQASATSEECTVAWGVCNHAFHFHCI-------------------------------- 84

Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                   SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 85  --------SRWLKTRQVCPLDNREWEFQKYGH 108

Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme, like CDC34, to the complex and brings it into close proximity to the substrate. May be required for histone H3 and histone H4 ubiquitination in response to ultraviolet and for subsequent DNA repair. Promotes the neddylation of cul1, cul2, cul4 and cul4 via its interaction with ube2m.

Salmo salar (taxid: 8030)

>sp|P62878|RBX1_MOUSE E3 ubiquitin-protein ligase RBX1 OS=Mus musculus GN=Rbx1 PE=1 SV=1

 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 100/152 (65%), Gaps = 46/152 (30%)

Query: 2   SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
           +AM+VDT      P+ + +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 3   AAMDVDT------PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56

Query: 62  QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
           QANQAS TSEECTVAWGVCNHAFHFHCI                                
Sbjct: 57  QANQASATSEECTVAWGVCNHAFHFHCI-------------------------------- 84

Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                   SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 85  --------SRWLKTRQVCPLDNREWEFQKYGH 108

E3 ubiquitin ligase component of multiple cullin-RING-based E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins, including proteins involved in cell cycle progression, signal transduction, transcription and transcription-coupled nucleotide excision repair. The functional specificity of the E3 ubiquitin-protein ligase complexes depends on the variable substrate recognition components. As a component of the CSA complex promotes the ubiquitination of ERCC6 resulting in proteasomal degradation (By similarity). Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme, like CDC34, to the complex and brings it into close proximity to the substrate. Probably also stimulates CDC34 autoubiquitination. May be required for histone H3 and histone H4 ubiquitination in response to ultraviolet and for subsequent DNA repair. Promotes the neddylation of CUL1, CUL2, CUL4 and CUL4 via its interaction with UBE2M.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P62877|RBX1_HUMAN E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens GN=RBX1 PE=1 SV=1

 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 100/152 (65%), Gaps = 46/152 (30%)

Query: 2   SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
           +AM+VDT      P+ + +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 3   AAMDVDT------PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56

Query: 62  QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
           QANQAS TSEECTVAWGVCNHAFHFHCI                                
Sbjct: 57  QANQASATSEECTVAWGVCNHAFHFHCI-------------------------------- 84

Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                   SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 85  --------SRWLKTRQVCPLDNREWEFQKYGH 108

E3 ubiquitin ligase component of multiple cullin-RING-based E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins, including proteins involved in cell cycle progression, signal transduction, transcription and transcription-coupled nucleotide excision repair. The functional specificity of the E3 ubiquitin-protein ligase complexes depends on the variable substrate recognition components. As a component of the CSA complex promotes the ubiquitination of ERCC6 resulting in proteasomal degradation. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme, like CDC34, to the complex and brings it into close proximity to the substrate. Probably also stimulates CDC34 autoubiquitination. May be required for histone H3 and histone H4 ubiquitination in response to ultraviolet and for subsequent DNA repair. Promotes the neddylation of CUL1, CUL2, CUL4 and CUL4 via its interaction with UBE2M.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q54K33|RBX1_DICDI RING-box protein 1 OS=Dictyostelium discoideum GN=rbx1 PE=3 SV=1

 Score =  166 bits (420), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 84/138 (60%), Positives = 92/138 (66%), Gaps = 40/138 (28%)

Query: 16  TSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTV 75
           +SS +K  KK+F+VK+WNAVALW WDIVVDNCAICRNHIMDLCIECQANQAS TSEECTV
Sbjct: 7   SSSASKTPKKKFEVKRWNAVALWIWDIVVDNCAICRNHIMDLCIECQANQASNTSEECTV 66

Query: 76  AWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT 135
           AWG+CNHAFHFHC                                        ISRWLK+
Sbjct: 67  AWGICNHAFHFHC----------------------------------------ISRWLKS 86

Query: 136 RQVCPLDNREWEFQKYGH 153
           RQVCPLDNR+WEFQKYG 
Sbjct: 87  RQVCPLDNRDWEFQKYGR 104

Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme to the complex and brings it into close proximity to the substrate.

Dictyostelium discoideum (taxid: 44689)

>sp|Q940X7|RBX1A_ARATH RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1

 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/131 (64%), Positives = 88/131 (67%), Gaps = 40/131 (30%)

Query: 23  EKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNH 82
           + KRF++KKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQAS TSEECTVAWGVCNH
Sbjct: 28  KAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH 87

Query: 83  AFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 142
           AFHFHCI                                        SRWLKTRQVCPLD
Sbjct: 88  AFHFHCI----------------------------------------SRWLKTRQVCPLD 107

Query: 143 NREWEFQKYGH 153
           N EWEFQKYGH
Sbjct: 108 NSEWEFQKYGH 118

Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. The SCF complex plays a crucial role in regulating response to auxin and is essential for growth and development. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme, to the complex and brings it into close proximity to the substrate. Promotes the neddylation of CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q23457|RBX1_CAEEL RING-box protein 1 OS=Caenorhabditis elegans GN=rbx-1 PE=1 SV=1

 Score =  159 bits (403), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 87/153 (56%), Positives = 93/153 (60%), Gaps = 43/153 (28%)

Query: 1   MSAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIE 60
           M+     T   VE  T+ T K   KRF+VKKW+AVALWAWDI VDNCAICRNHIMDLCIE
Sbjct: 1   MAQASDSTAMEVEEATNQTVK---KRFEVKKWSAVALWAWDIQVDNCAICRNHIMDLCIE 57

Query: 61  CQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVC 120
           CQANQA+   +ECTVAWG CNHAFHFHCI                               
Sbjct: 58  CQANQAAGLKDECTVAWGNCNHAFHFHCI------------------------------- 86

Query: 121 NHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                    SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 87  ---------SRWLKTRQVCPLDNREWEFQKYGH 110

Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme to the complex and brings it into close proximity to the substrate (By similarity). Essential for meiosis, mitotic chromosomal condensation and cytokinesis. Involved in histone H3 phosphorylation.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9M2B0|RBX1B_ARATH RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1

 Score =  155 bits (393), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 82/129 (63%), Positives = 85/129 (65%), Gaps = 40/129 (31%)

Query: 25  KRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAF 84
           KRF++KKW+AVALWAWDIVVDNCAICRNHIMDLCIEC ANQAS TSEECTVAWGVCNHAF
Sbjct: 27  KRFELKKWSAVALWAWDIVVDNCAICRNHIMDLCIECLANQASATSEECTVAWGVCNHAF 86

Query: 85  HFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 144
           HFHCI                                        SRWLKTRQVCPLD  
Sbjct: 87  HFHCI----------------------------------------SRWLKTRQVCPLDVC 106

Query: 145 EWEFQKYGH 153
           EWEFQKYGH
Sbjct: 107 EWEFQKYGH 115

Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. The SCF complex plays a crucial role in regulating response to auxin and is essential for growth and development. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme, to the complex and brings it into close proximity to the substrate.

Arabidopsis thaliana (taxid: 3702)

>sp|O13959|RBX1_SCHPO RING-box protein pip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pip1 PE=1 SV=2

 Score =  149 bits (377), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/150 (53%), Positives = 91/150 (60%), Gaps = 47/150 (31%)

Query: 4   MEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 63
           M++D +E VE+      + +  RF++KKWNAVALW WDIVVDNCAICRNHIMDLCIECQA
Sbjct: 5   MQIDKKE-VEI------EQKPPRFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQA 57

Query: 64  NQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHA 123
           N  S  ++ECTVAWG CNHAFHFHCI                                  
Sbjct: 58  NTDSAAAQECTVAWGTCNHAFHFHCI---------------------------------- 83

Query: 124 FHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                 SRWL TR VCPLDNREWEFQ+YGH
Sbjct: 84  ------SRWLNTRNVCPLDNREWEFQRYGH 107

Component of E3 ubiquitin ligase SCF complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Seems to recruit the E2 ubiquitination enzyme, like UBC3/CDC34, to the complex and brings it into close proximity to the substrate. Component of the rik1-associated E3 ubiquitin ligase complex that shows ubiquitin ligase activity and is required for histone H3K9 methylation. H3K9me represents a specific tag for epigenetic transcriptional repression by recruiting swi6/HP1 to methylated histones which leads to transcriptional silencing within centromeric heterochromatin, telomeric regions and at the silent mating-type loci.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9NHX0|RBX1B_DROME RING-box protein 1B OS=Drosophila melanogaster GN=Roc1b PE=2 SV=2

 Score =  125 bits (315), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 83/148 (56%), Gaps = 43/148 (29%)

Query: 7   DTEENVELPTSS--TTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQAN 64
           D + N E P+ S    +   +RF VKKW A A+W WD+ VDNCAICRNHIM+LCIECQA+
Sbjct: 15  DMDFNDEEPSCSGGAVQARTERFVVKKWVAHAMWGWDVAVDNCAICRNHIMNLCIECQAD 74

Query: 65  QASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAF 124
             +   +ECTVAWG CNHAFH+HC                                    
Sbjct: 75  -PNANQDECTVAWGECNHAFHYHC------------------------------------ 97

Query: 125 HFHCISRWLKTRQVCPLDNREWEFQKYG 152
               I+RWLKTR VCPLDN+EW +QKYG
Sbjct: 98  ----IARWLKTRLVCPLDNKEWVYQKYG 121

Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme to the complex and brings it into close proximity to the substrate.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
340710468	113	PREDICTED: RING-box protein 1A-like [Bom	0.725	0.982	0.677	1e-48
270005021	113	hypothetical protein TcasGA2_TC007016 [T	0.725	0.982	0.671	2e-48
383853493	113	PREDICTED: RING-box protein 1A-like [Meg	0.725	0.982	0.671	5e-48
332374460	113	unknown [Dendroctonus ponderosae]	0.725	0.982	0.664	6e-48
114052775	113	ring box protein [Bombyx mori] gi|872485	0.725	0.982	0.657	1e-46
157107043	109	ring finger [Aedes aegypti] gi|94469000|	0.712	1.0	0.66	1e-46
350537579	110	uncharacterized protein LOC100162035 [Ac	0.712	0.990	0.675	2e-46
170054653	109	RING-box protein 1A [Culex quinquefascia	0.712	1.0	0.66	2e-46
58385635	109	AGAP005202-PB [Anopheles gambiae str. PE	0.712	1.0	0.653	2e-46
195469549	111	GE16630 [Drosophila yakuba] gi|194187224	0.725	1.0	0.666	3e-46

>gi|340710468|ref|XP_003393810.1| PREDICTED: RING-box protein 1A-like [Bombus terrestris] gi|350427457|ref|XP_003494765.1| PREDICTED: RING-box protein 1A-like [Bombus impatiens]

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 103/152 (67%), Positives = 109/152 (71%), Gaps = 41/152 (26%)

Query: 2   SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
           SAME+D EE+ +LPTSS++KGEKKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 3   SAMEIDDEES-DLPTSSSSKGEKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61

Query: 62  QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
           QANQAS TSEECTVAWGVCNHAFHFHCI                                
Sbjct: 62  QANQASATSEECTVAWGVCNHAFHFHCI-------------------------------- 89

Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                   SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 90  --------SRWLKTRQVCPLDNREWEFQKYGH 113

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005021|gb|EFA01469.1| hypothetical protein TcasGA2_TC007016 [Tribolium castaneum]

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/152 (67%), Positives = 109/152 (71%), Gaps = 41/152 (26%)

Query: 2   SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
           +AM+VD +E VE+PTSS++KGEKKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 3   AAMDVDVDE-VEVPTSSSSKGEKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61

Query: 62  QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
           QANQAS TSEECTVAWGVCNHAFHFHCI                                
Sbjct: 62  QANQASATSEECTVAWGVCNHAFHFHCI-------------------------------- 89

Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                   SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 90  --------SRWLKTRQVCPLDNREWEFQKYGH 113

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853493|ref|XP_003702257.1| PREDICTED: RING-box protein 1A-like [Megachile rotundata]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 102/152 (67%), Positives = 107/152 (70%), Gaps = 41/152 (26%)

Query: 2   SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
           S ME+D EEN +LPTSS++K EKKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 3   SPMEIDDEEN-DLPTSSSSKAEKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61

Query: 62  QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
           QANQAS TSEECTVAWGVCNHAFHFHCI                                
Sbjct: 62  QANQASATSEECTVAWGVCNHAFHFHCI-------------------------------- 89

Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                   SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 90  --------SRWLKTRQVCPLDNREWEFQKYGH 113

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374460|gb|AEE62371.1| unknown [Dendroctonus ponderosae]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 101/152 (66%), Positives = 109/152 (71%), Gaps = 41/152 (26%)

Query: 2   SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
           +AM+VD +E +E+PTSS++KGEKKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 3   AAMDVDMDE-MEVPTSSSSKGEKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61

Query: 62  QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
           QANQAS TSEECTVAWGVCNHAFHFHCI                                
Sbjct: 62  QANQASATSEECTVAWGVCNHAFHFHCI-------------------------------- 89

Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                   SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 90  --------SRWLKTRQVCPLDNREWEFQKYGH 113

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052775|ref|NP_001040275.1| ring box protein [Bombyx mori] gi|87248591|gb|ABD36348.1| ring box protein [Bombyx mori]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 100/152 (65%), Positives = 106/152 (69%), Gaps = 41/152 (26%)

Query: 2   SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
           S M+VD EE VE+ +SS+ KG+KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 3   SVMDVD-EEEVEMASSSSGKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61

Query: 62  QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
           QANQAS TSEECTVAWGVCNHAFHFHCI                                
Sbjct: 62  QANQASATSEECTVAWGVCNHAFHFHCI-------------------------------- 89

Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                   SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 90  --------SRWLKTRQVCPLDNREWEFQKYGH 113

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157107043|ref|XP_001649597.1| ring finger [Aedes aegypti] gi|94469000|gb|ABF18349.1| SCF ubiquitin ligase Rbx1 component [Aedes aegypti] gi|108879660|gb|EAT43885.1| AAEL004691-PA [Aedes aegypti]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/150 (66%), Positives = 105/150 (70%), Gaps = 41/150 (27%)

Query: 4   MEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 63
           ME+D EE  E PTSS+++GE+KRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA
Sbjct: 1   MEID-EEEFEQPTSSSSRGERKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 59

Query: 64  NQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHA 123
           NQAS TSEECTVAWGVCNHAFHFHCI                                  
Sbjct: 60  NQASATSEECTVAWGVCNHAFHFHCI---------------------------------- 85

Query: 124 FHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                 SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 86  ------SRWLKTRQVCPLDNREWEFQKYGH 109

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350537579|ref|NP_001233108.1| uncharacterized protein LOC100162035 [Acyrthosiphon pisum] gi|239789982|dbj|BAH71582.1| ACYPI003216 [Acyrthosiphon pisum]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/151 (67%), Positives = 107/151 (70%), Gaps = 42/151 (27%)

Query: 4   MEVDTEENVELPTSSTT-KGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQ 62
           MEVD EE+VE P+SST+ +GEKKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQ
Sbjct: 1   MEVD-EEDVEAPSSSTSSRGEKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQ 59

Query: 63  ANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNH 122
           ANQAS TSEECTVAWGVCNHAFHFHCI                                 
Sbjct: 60  ANQASATSEECTVAWGVCNHAFHFHCI--------------------------------- 86

Query: 123 AFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                  SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 87  -------SRWLKTRQVCPLDNREWEFQKYGH 110

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170054653|ref|XP_001863227.1| RING-box protein 1A [Culex quinquefasciatus] gi|167874914|gb|EDS38297.1| RING-box protein 1A [Culex quinquefasciatus]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/150 (66%), Positives = 105/150 (70%), Gaps = 41/150 (27%)

Query: 4   MEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 63
           M+VD EE  E PTSS+++GE+KRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA
Sbjct: 1   MDVD-EEEFEQPTSSSSRGERKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 59

Query: 64  NQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHA 123
           NQAS TSEECTVAWGVCNHAFHFHCI                                  
Sbjct: 60  NQASATSEECTVAWGVCNHAFHFHCI---------------------------------- 85

Query: 124 FHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                 SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 86  ------SRWLKTRQVCPLDNREWEFQKYGH 109

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58385635|ref|XP_314102.2| AGAP005202-PB [Anopheles gambiae str. PEST] gi|158292752|ref|XP_001688524.1| AGAP005202-PA [Anopheles gambiae str. PEST] gi|55240588|gb|EAA09407.2| AGAP005202-PB [Anopheles gambiae str. PEST] gi|157017140|gb|EDO64107.1| AGAP005202-PA [Anopheles gambiae str. PEST] gi|312379673|gb|EFR25873.1| hypothetical protein AND_26478 [Anopheles darlingi]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/150 (65%), Positives = 105/150 (70%), Gaps = 41/150 (27%)

Query: 4   MEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 63
           M++D EE  E PTSS+++GE+KRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA
Sbjct: 1   MDID-EEEFEAPTSSSSRGERKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 59

Query: 64  NQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHA 123
           NQAS TSEECTVAWGVCNHAFHFHCI                                  
Sbjct: 60  NQASATSEECTVAWGVCNHAFHFHCI---------------------------------- 85

Query: 124 FHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                 SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 86  ------SRWLKTRQVCPLDNREWEFQKYGH 109

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195469549|ref|XP_002099700.1| GE16630 [Drosophila yakuba] gi|194187224|gb|EDX00808.1| GE16630 [Drosophila yakuba]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/153 (66%), Positives = 107/153 (69%), Gaps = 42/153 (27%)

Query: 1   MSAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIE 60
           MS MEVD EE  E+P+SS+ KGEKKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIE
Sbjct: 1   MSNMEVD-EEEFEVPSSSS-KGEKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIE 58

Query: 61  CQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVC 120
           CQANQAS TSEECTVAWGVCNHAFHFHCI                               
Sbjct: 59  CQANQASATSEECTVAWGVCNHAFHFHCI------------------------------- 87

Query: 121 NHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                    SRWLKTRQVCPLDNREW+FQKYGH
Sbjct: 88  ---------SRWLKTRQVCPLDNREWDFQKYGH 111

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
TAIR|locus:2149927	142	RBX1 "RING-box 1" [Arabidopsis	0.830	0.894	0.636	9.1e-45
FB|FBgn0025638	108	Roc1a "Roc1a" [Drosophila mela	0.562	0.796	0.875	3.3e-40
UNIPROTKB|Q8QG64	108	rbx1 "RING-box protein 1" [Sal	0.549	0.777	0.8	2.4e-37
ZFIN|ZDB-GENE-041008-106	122	rbx1 "ring-box 1" [Danio rerio	0.549	0.688	0.8	3e-37
UNIPROTKB|Q2HJI9	108	RBX1 "Uncharacterized protein"	0.549	0.777	0.8	4.9e-37
UNIPROTKB|P62877	108	RBX1 "E3 ubiquitin-protein lig	0.549	0.777	0.8	4.9e-37
MGI|MGI:1891829	108	Rbx1 "ring-box 1" [Mus musculu	0.549	0.777	0.8	4.9e-37
RGD|1308453	108	Rbx1 "ring-box 1, E3 ubiquitin	0.549	0.777	0.8	4.9e-37
UNIPROTKB|E1BSR9	105	RBX1 "Uncharacterized protein"	0.549	0.8	0.8	4.9e-37
UNIPROTKB|E1BL52	108	LOC780968 "Uncharacterized pro	0.549	0.777	0.788	1.7e-36

TAIR|locus:2149927 RBX1 "RING-box 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 93/146 (63%), Positives = 105/146 (71%)

Query:     9 EENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQAST 68
             E +  +  SS+ K + KRF++KKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQAS 
Sbjct:    15 EASSSVAASSSNK-KAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASA 73

Query:    69 TSEECTVAW-GVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFH 127
             TSEECTVAW    N+   + CI         ++C     S   +      GVCNHAFHFH
Sbjct:    74 TSEECTVAWEDDQNNCNKYFCI---------LDC-----SMKDDHLE---GVCNHAFHFH 116

Query:   128 CISRWLKTRQVCPLDNREWEFQKYGH 153
             CISRWLKTRQVCPLDN EWEFQKYGH
Sbjct:   117 CISRWLKTRQVCPLDNSEWEFQKYGH 142

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0016925 "protein sumoylation" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

FB|FBgn0025638 Roc1a "Roc1a" [Drosophila melanogaster (taxid:7227)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 77/88 (87%), Positives = 83/88 (94%)

Query:     4 MEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 63
             MEVD E+  E+P+SS+ KG+KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA
Sbjct:     1 MEVD-EDGYEVPSSSS-KGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 58

Query:    64 NQASTTSEECTVAWGVCNHAFHFHCISR 91
             NQAS TSEECTVAWGVCNHAFHFHCISR
Sbjct:    59 NQASATSEECTVAWGVCNHAFHFHCISR 86

GO:0007224 "smoothened signaling pathway" evidence=IMP

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

GO:0006508 "proteolysis" evidence=IMP;TAS

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0008283 "cell proliferation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019915 "lipid storage" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IMP

UNIPROTKB|Q8QG64 rbx1 "RING-box protein 1" [Salmo salar (taxid:8030)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 72/90 (80%), Positives = 79/90 (87%)

Query:     2 SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
             +AM+VDT      P+++ +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct:     3 AAMDVDT------PSATNSGASKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56

Query:    62 QANQASTTSEECTVAWGVCNHAFHFHCISR 91
             QANQAS TSEECTVAWGVCNHAFHFHCISR
Sbjct:    57 QANQASATSEECTVAWGVCNHAFHFHCISR 86

GO:0006513 "protein monoubiquitination" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0019788 "NEDD8 ligase activity" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISS

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISS

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0045116 "protein neddylation" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

ZFIN|ZDB-GENE-041008-106 rbx1 "ring-box 1" [Danio rerio (taxid:7955)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 72/90 (80%), Positives = 78/90 (86%)

Query:     2 SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
             +AM+VDT      P+ + +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct:    17 AAMDVDT------PSGANSGASKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 70

Query:    62 QANQASTTSEECTVAWGVCNHAFHFHCISR 91
             QANQAS TSEECTVAWGVCNHAFHFHCISR
Sbjct:    71 QANQASATSEECTVAWGVCNHAFHFHCISR 100

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q2HJI9 RBX1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 72/90 (80%), Positives = 78/90 (86%)

Query:     2 SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
             +AM+VDT      P+ + +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct:     3 AAMDVDT------PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56

Query:    62 QANQASTTSEECTVAWGVCNHAFHFHCISR 91
             QANQAS TSEECTVAWGVCNHAFHFHCISR
Sbjct:    57 QANQASATSEECTVAWGVCNHAFHFHCISR 86

GO:0045116 "protein neddylation" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031466 "Cul5-RING ubiquitin ligase complex" evidence=IEA

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA

GO:0031462 "Cul2-RING ubiquitin ligase complex" evidence=IEA

GO:0019788 "NEDD8 ligase activity" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|P62877 RBX1 "E3 ubiquitin-protein ligase RBX1" [Homo sapiens (taxid:9606)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 72/90 (80%), Positives = 78/90 (86%)

Query:     2 SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
             +AM+VDT      P+ + +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct:     3 AAMDVDT------PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56

Query:    62 QANQASTTSEECTVAWGVCNHAFHFHCISR 91
             QANQAS TSEECTVAWGVCNHAFHFHCISR
Sbjct:    57 QANQASATSEECTVAWGVCNHAFHFHCISR 86

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0030891 "VCB complex" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0045116 "protein neddylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019788 "NEDD8 ligase activity" evidence=IDA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS;IDA

GO:0005829 "cytosol" evidence=ISS;TAS

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IDA

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IDA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS;IDA

GO:0006513 "protein monoubiquitination" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IDA

GO:0031462 "Cul2-RING ubiquitin ligase complex" evidence=IDA

GO:0031466 "Cul5-RING ubiquitin ligase complex" evidence=IDA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0033554 "cellular response to stress" evidence=TAS

GO:0061418 "regulation of transcription from RNA polymerase II promoter in response to hypoxia" evidence=TAS

GO:0071456 "cellular response to hypoxia" evidence=TAS

MGI|MGI:1891829 Rbx1 "ring-box 1" [Mus musculus (taxid:10090)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 72/90 (80%), Positives = 78/90 (86%)

Query:     2 SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
             +AM+VDT      P+ + +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct:     3 AAMDVDT------PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56

Query:    62 QANQASTTSEECTVAWGVCNHAFHFHCISR 91
             QANQAS TSEECTVAWGVCNHAFHFHCISR
Sbjct:    57 QANQASATSEECTVAWGVCNHAFHFHCISR 86

GO:0000151 "ubiquitin ligase complex" evidence=TAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=TAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006281 "DNA repair" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0006513 "protein monoubiquitination" evidence=IGI;ISO

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008190 "eukaryotic initiation factor 4E binding" evidence=TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO;ISS;IDA;TAS

GO:0016874 "ligase activity" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO;ISS;IDA;IPI

GO:0019788 "NEDD8 ligase activity" evidence=ISO

GO:0030163 "protein catabolic process" evidence=IMP

GO:0030891 "VCB complex" evidence=ISO

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;IDA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=ISO

GO:0031462 "Cul2-RING ubiquitin ligase complex" evidence=ISO

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISO

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISO

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=ISO

GO:0031466 "Cul5-RING ubiquitin ligase complex" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0045116 "protein neddylation" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|1308453 Rbx1 "ring-box 1, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 72/90 (80%), Positives = 78/90 (86%)

Query:     2 SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
             +AM+VDT      P+ + +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct:     3 AAMDVDT------PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56

Query:    62 QANQASTTSEECTVAWGVCNHAFHFHCISR 91
             QANQAS TSEECTVAWGVCNHAFHFHCISR
Sbjct:    57 QANQASATSEECTVAWGVCNHAFHFHCISR 86

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IC;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006513 "protein monoubiquitination" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO

GO:0019788 "NEDD8 ligase activity" evidence=IEA;ISO

GO:0030163 "protein catabolic process" evidence=ISO

GO:0030891 "VCB complex" evidence=IDA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=ISO

GO:0031462 "Cul2-RING ubiquitin ligase complex" evidence=IEA;ISO

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA;ISO

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA;ISO

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA;ISO

GO:0031466 "Cul5-RING ubiquitin ligase complex" evidence=IEA;ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0032403 "protein complex binding" evidence=IPI

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0045116 "protein neddylation" evidence=IEA;ISO

UNIPROTKB|E1BSR9 RBX1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 72/90 (80%), Positives = 78/90 (86%)

Query:     2 SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
             +AM+VDT      P+ + +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct:     3 AAMDVDT------PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56

Query:    62 QANQASTTSEECTVAWGVCNHAFHFHCISR 91
             QANQAS TSEECTVAWGVCNHAFHFHCISR
Sbjct:    57 QANQASATSEECTVAWGVCNHAFHFHCISR 86

GO:0008270 "zinc ion binding" evidence=IEA

GO:0045116 "protein neddylation" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0019788 "NEDD8 ligase activity" evidence=IEA

GO:0031462 "Cul2-RING ubiquitin ligase complex" evidence=IEA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA

GO:0031466 "Cul5-RING ubiquitin ligase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|E1BL52 LOC780968 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 71/90 (78%), Positives = 77/90 (85%)

Query:     2 SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
             +AM+VDT      P+ + +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct:     3 AAMDVDT------PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56

Query:    62 QANQASTTSEECTVAWGVCNHAFHFHCISR 91
             QANQ S TSEECTVAWGVCNHAFHFHCISR
Sbjct:    57 QANQESATSEECTVAWGVCNHAFHFHCISR 86

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P62878	RBX1_MOUSE	6, ., 3, ., 2, ., -	0.6184	0.6928	0.9814	yes	N/A
Q08273	RBX1_YEAST	No assigned EC number	0.4155	0.7189	0.9090	yes	N/A
O13959	RBX1_SCHPO	No assigned EC number	0.5333	0.6732	0.9626	yes	N/A
Q9W5E1	RBX1A_DROME	No assigned EC number	0.6533	0.7058	1.0	yes	N/A
Q940X7	RBX1A_ARATH	No assigned EC number	0.6412	0.5947	0.7711	yes	N/A
Q23457	RBX1_CAEEL	No assigned EC number	0.5686	0.7189	1.0	yes	N/A
Q54K33	RBX1_DICDI	No assigned EC number	0.6086	0.6405	0.9423	yes	N/A
P62877	RBX1_HUMAN	6, ., 3, ., 2, ., -	0.6184	0.6928	0.9814	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	153
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	6e-36
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	2e-29
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	2e-08
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	0.001
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	0.002

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score =  119 bits (299), Expect = 6e-36
 Identities = 52/129 (40%), Positives = 60/129 (46%), Gaps = 42/129 (32%)

Query: 25  KRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAF 84
            +  +KKW+AVALW+WDI +D CAICRNHIM  C ECQ                      
Sbjct: 1   MKVKIKKWHAVALWSWDIPIDVCAICRNHIMGTCPECQFG-------------------- 40

Query: 85  HFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 144
                                  T  +EC V WGVCNHAFH HCI RWL T+ VCPLD +
Sbjct: 41  ----------------------MTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQ 78

Query: 145 EWEFQKYGH 153
            W     G 
Sbjct: 79  TWVLADGGA 87

Length = 88

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score =  102 bits (255), Expect = 2e-29
 Identities = 46/118 (38%), Positives = 52/118 (44%), Gaps = 45/118 (38%)

Query: 26  RFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFH 85
           R ++KKWNAVALW+WDI  D CAICRNH    C EC                        
Sbjct: 1   RVEIKKWNAVALWSWDIEDDVCAICRNHFDGTCPEC------------------------ 36

Query: 86  FHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 143
                                 +  ++C V WG C HAFH HCISRWLKTR  CPL  
Sbjct: 37  ---------------------KSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 48.6 bits (116), Expect = 2e-08
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 29 VKKWNAVALWAWDIVVD-NCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFH 87
          +K+WNAVA W WD   D  C ICR      C +C+        ++C + WG C H FH H
Sbjct: 5  IKEWNAVATWTWDTPSDDVCGICRVSFDGTCPQCK-----FPGDDCPLVWGKCKHNFHMH 59

Query: 88 CISR 91
          CI +
Sbjct: 60 CILK 63

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
           C H  H HC+  WL+ +Q CP+
Sbjct: 318 CGHILHLHCLKNWLERQQTCPI 339

Length = 491

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
           C H FH  C+ +WL++   CPL
Sbjct: 21  CGHVFHKECLDKWLRSSNTCPL 42

Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
KOG2930|consensus	114		100.0
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	100.0
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	99.95
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.93
KOG1493|consensus	84		99.93
KOG2930|consensus	114		99.68
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	99.56
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	99.52
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.47
KOG1493|consensus	84		99.28
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.16
PHA02929	238	N1R/p28-like protein; Provisional	99.03
KOG4628|consensus	348		98.98
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.92
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.91
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.8
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.68
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.63
PHA02926	242	zinc finger-like protein; Provisional	98.62
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.61
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.59
KOG0802|consensus	543		98.57
PF14634	44	zf-RING_5: zinc-RING finger domain	98.53
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.53
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.44
KOG0317|consensus	293		98.44
KOG0320|consensus	187		98.44
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.41
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.36
KOG4628|consensus	348		98.13
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.06
KOG1734|consensus	328		98.03
KOG0827|consensus	465		98.01
KOG0823|consensus	230		97.98
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.94
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.87
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.86
KOG0828|consensus	636		97.8
PHA02929	238	N1R/p28-like protein; Provisional	97.69
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.61
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.57
KOG2164|consensus	513		97.55
KOG0804|consensus	493		97.49
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.47
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.4
KOG0287|consensus	442		97.4
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	97.35
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.28
KOG0825|consensus	1134		97.25
KOG3970|consensus	299		97.21
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	97.15
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	97.09
PHA02926	242	zinc finger-like protein; Provisional	97.01
KOG0978|consensus	698		96.95
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	96.89
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	96.86
KOG2177|consensus	386		96.84
KOG1645|consensus	463		96.75
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	96.73
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.57
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	96.49
KOG1039|consensus	344		96.48
KOG4445|consensus	368		96.29
KOG1941|consensus	518		96.19
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	96.15
KOG0827|consensus	465		95.86
KOG0824|consensus	324		95.8
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	95.62
KOG4172|consensus	62		95.58
KOG0802|consensus	543		95.54
KOG0297|consensus	391		95.41
KOG0804|consensus	493		95.32
KOG0311|consensus	381		95.23
KOG0309|consensus	1081		95.2
KOG2114|consensus	933		95.16
KOG4265|consensus	349		95.1
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	95.07
KOG0823|consensus	230		94.96
KOG3268|consensus	234		94.82
PHA02825	162	LAP/PHD finger-like protein; Provisional	94.76
PHA02862	156	5L protein; Provisional	94.73
KOG4185|consensus	296		94.65
KOG1734|consensus	328		94.48
KOG2660|consensus	331		94.48
KOG1940|consensus	276		94.45
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	94.22
KOG0317|consensus	293		93.88
KOG1952|consensus	950		93.87
KOG1428|consensus	3738		93.64
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	93.56
KOG1785|consensus	563		93.29
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	93.19
PF14634	44	zf-RING_5: zinc-RING finger domain	93.17
KOG1813|consensus	313		92.9
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	92.84
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	92.83
COG5152	259	Uncharacterized conserved protein, contains RING a	92.52
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	92.46
KOG0825|consensus	1134		92.1
KOG3039|consensus	303		90.73
KOG2879|consensus	298		90.72
KOG0320|consensus	187		90.12
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	89.78
PF04641	260	Rtf2: Rtf2 RING-finger	89.67
KOG4159|consensus	398		89.39
PHA03096	284	p28-like protein; Provisional	88.89
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	88.63
COG5236	493	Uncharacterized conserved protein, contains RING Z	88.62
KOG2034|consensus	911		88.32
KOG1002|consensus	791		87.24
KOG2164|consensus	513		87.14
KOG4739|consensus	233		86.98
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	86.95
KOG0828|consensus	636		86.89
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	86.73
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	86.01
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	84.77
PF13901	202	DUF4206: Domain of unknown function (DUF4206)	83.41
KOG2114|consensus	933		83.4
KOG1571|consensus	355		82.68
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	82.49
KOG2817|consensus	394		81.48
KOG1428|consensus	3738		80.87

>KOG2930|consensus

Probab=100.00  E-value=9.6e-39  Score=230.75  Aligned_cols=95  Identities=88%  Similarity=1.663  Sum_probs=85.7

Q ss_pred             CCCccccceEEEEEEEeEEeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCc
Q psy16471         18 STTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDL   97 (153)
Q Consensus        18 ~~~~~~~~~~~vk~w~~va~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~   97 (153)
                      ++....+++|.||+|++||.|.||+..|+|+|||+.++|+||+||+++ ..++++|                        
T Consensus        20 ~s~~~~~krF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~-~~~~~EC------------------------   74 (114)
T KOG2930|consen   20 SSNEGGKKRFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ-SATSEEC------------------------   74 (114)
T ss_pred             ccCCCCCcceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCC-CCCCCce------------------------
Confidence            334455999999999999999999999999999999999999999986 5666666                        


Q ss_pred             cccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccccCC
Q psy16471         98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH  153 (153)
Q Consensus        98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~~~  153 (153)
                                      .+++|.|+|.||+|||.+||++++.||+|.++|.||+||+
T Consensus        75 ----------------~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~qr~g~  114 (114)
T KOG2930|consen   75 ----------------TVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVFQRYGH  114 (114)
T ss_pred             ----------------EEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeEeecCC
Confidence                            5666678899999999999999999999999999999996

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=100.00  E-value=2.6e-33  Score=194.19  Aligned_cols=87  Identities=60%  Similarity=1.274  Sum_probs=78.8

Q ss_pred             ceEEEEEEEeEEeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCcccccccc
Q psy16471         25 KRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQAN  104 (153)
Q Consensus        25 ~~~~vk~w~~va~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~  104 (153)
                      ++|+||+|++||.|+||.+.|+|+|||++++++|++|+.++  .|+                                  
T Consensus         1 ~kvkIkkw~aVa~Wswdi~id~CaICRnhim~~C~eCq~~~--~~~----------------------------------   44 (88)
T COG5194           1 MKVKIKKWHAVALWSWDIPIDVCAICRNHIMGTCPECQFGM--TPG----------------------------------   44 (88)
T ss_pred             CceEeeeEeEEEEEecccccchhhhhhccccCcCcccccCC--CCC----------------------------------
Confidence            47899999999999999999999999999999999998853  334                                  


Q ss_pred             ccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccccCC
Q psy16471        105 QASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH  153 (153)
Q Consensus       105 ~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~~~  153 (153)
                            ++|++++|.|+|.||.|||.+||.+++.|||+|++|+||.+++
T Consensus        45 ------~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~~~~   87 (88)
T COG5194          45 ------DECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLADGGA   87 (88)
T ss_pred             ------CcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEecccC
Confidence                  4557788889999999999999999999999999999999875

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=99.95  E-value=6.3e-29  Score=174.72  Aligned_cols=81  Identities=40%  Similarity=1.114  Sum_probs=72.6

Q ss_pred             ceEEEEEEEeEEeeeecc-cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccc
Q psy16471         25 KRFDVKKWNAVALWAWDI-VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQA  103 (153)
Q Consensus        25 ~~~~vk~w~~va~w~wd~-~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~  103 (153)
                      ++++|++|++||.|.||+ .+|+|+|||..|+..|+.|+.+                                       
T Consensus         1 mkv~i~~w~~va~W~Wd~~~dd~CgICr~~fdg~Cp~Ck~P---------------------------------------   41 (85)
T PF12861_consen    1 MKVKIKEWHAVATWKWDVANDDVCGICRMPFDGCCPDCKFP---------------------------------------   41 (85)
T ss_pred             CeeEEEEEEEEEEEEEecCCCCceeeEecccccCCCCccCC---------------------------------------
Confidence            368999999999999997 5799999999999999998774                                       


Q ss_pred             cccCCCCccceEEeeeecceechHHHHHHHcC---CCCCCCCCCCccccc
Q psy16471        104 NQASTTSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNREWEFQK  150 (153)
Q Consensus       104 ~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~---~~~CP~Cr~~w~~~~  150 (153)
                            +++|+++++.|+|.||.|||.+||++   +++|||||++|++++
T Consensus        42 ------gd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k~   85 (85)
T PF12861_consen   42 ------GDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFKE   85 (85)
T ss_pred             ------CCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeCC
Confidence                  56678899999999999999999997   478999999999975

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.93  E-value=2.7e-26  Score=157.18  Aligned_cols=73  Identities=63%  Similarity=1.399  Sum_probs=65.7

Q ss_pred             eEEEEEEEeEEeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccc
Q psy16471         26 RFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQ  105 (153)
Q Consensus        26 ~~~vk~w~~va~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~  105 (153)
                      +|+|++|++|+.|.||..+|.|+||+++|++.+++|++++                                        
T Consensus         1 ~~~i~~~~~v~~~~~~~~~d~C~IC~~~l~~~~~~~~~~~----------------------------------------   40 (73)
T PF12678_consen    1 KFKIKKWNAVALWSWDIADDNCAICREPLEDPCPECQAPQ----------------------------------------   40 (73)
T ss_dssp             SEEEEEEEEEEEEEESSCCSBETTTTSBTTSTTCCHHHCT----------------------------------------
T ss_pred             CeEEEEEEEEEEEeecCcCCcccccChhhhChhhhhcCCc----------------------------------------
Confidence            5899999999999999999999999999999999998862                                        


Q ss_pred             cCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCC
Q psy16471        106 ASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN  143 (153)
Q Consensus       106 ~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr  143 (153)
                           +++.++++.|||.||.+||.+||+++.+||+||
T Consensus        41 -----~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   41 -----DECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             -----TTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             -----cccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence                 334888899999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG1493|consensus

Probab=99.93  E-value=1e-26  Score=160.15  Aligned_cols=80  Identities=39%  Similarity=1.081  Sum_probs=72.8

Q ss_pred             eEEEEEEEeEEeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccc
Q psy16471         26 RFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQ  105 (153)
Q Consensus        26 ~~~vk~w~~va~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~  105 (153)
                      .++|++|+.++.|.|+.+.++|.|||.+|+..|+.|+.+                                         
T Consensus         2 kvki~~~h~~a~wtW~~~~e~CGiCRm~Fdg~Cp~Ck~P-----------------------------------------   40 (84)
T KOG1493|consen    2 KVKIKRYHAVAWWTWDAPDETCGICRMPFDGCCPDCKLP-----------------------------------------   40 (84)
T ss_pred             ceEEEEEEEEEEEEEcCCCCccceEecccCCcCCCCcCC-----------------------------------------
Confidence            578999999999999999999999999999999999875                                         


Q ss_pred             cCCCCccceEEeeeecceechHHHHHHHcC---CCCCCCCCCCccccc
Q psy16471        106 ASTTSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNREWEFQK  150 (153)
Q Consensus       106 ~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~---~~~CP~Cr~~w~~~~  150 (153)
                          +|+|+++++.|.|.||.|||.+|+.+   +.+|||||++|+|++
T Consensus        41 ----gDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~e   84 (84)
T KOG1493|consen   41 ----GDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFKE   84 (84)
T ss_pred             ----CCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEecC
Confidence                56667788889999999999999987   467999999999975

>KOG2930|consensus

Probab=99.68  E-value=2.7e-18  Score=124.52  Aligned_cols=78  Identities=32%  Similarity=0.548  Sum_probs=71.9

Q ss_pred             CCCCCccccceEEEEEEEeE-----EeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecc
Q psy16471         16 TSSTTKGEKKRFDVKKWNAV-----ALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCIS   90 (153)
Q Consensus        16 ~~~~~~~~~~~~~vk~w~~v-----a~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~   90 (153)
                      ++++.+.++||.+|+-|.|+     +++|++..+|.|..||.+...+..+|...            ||+|||+||+|||+
T Consensus        24 ~~~krF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~Va------------WG~CNHaFH~hCis   91 (114)
T KOG2930|consen   24 GGKKRFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVA------------WGVCNHAFHFHCIS   91 (114)
T ss_pred             CCCcceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEE------------eeecchHHHHHHHH
Confidence            34678899999999999996     78899999999999999987788899887            99999999999999


Q ss_pred             ccc-ccCccccccccc
Q psy16471         91 RNH-IMDLCIECQANQ  105 (153)
Q Consensus        91 ~w~-~~~~CpiC~~~~  105 (153)
                      +|+ .+..||.+.+++
T Consensus        92 rWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   92 RWLKTRNVCPLDNKEW  107 (114)
T ss_pred             HHHhhcCcCCCcCcce
Confidence            998 999999999988

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=99.56  E-value=6.1e-16  Score=107.61  Aligned_cols=75  Identities=31%  Similarity=0.516  Sum_probs=66.7

Q ss_pred             CccccceEEEEEEEeE-----EeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-
Q psy16471         20 TKGEKKRFDVKKWNAV-----ALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-   93 (153)
Q Consensus        20 ~~~~~~~~~vk~w~~v-----a~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-   93 (153)
                      +++++++.+|+.|+|.     ++++++..+|+|+.|+..+ ++..+|            +++||.|||+||.|||.+|+ 
T Consensus         2 kvkIkkw~aVa~Wswdi~id~CaICRnhim~~C~eCq~~~-~~~~eC------------~v~wG~CnHaFH~HCI~rWL~   68 (88)
T COG5194           2 KVKIKKWHAVALWSWDIPIDVCAICRNHIMGTCPECQFGM-TPGDEC------------PVVWGVCNHAFHDHCIYRWLD   68 (88)
T ss_pred             ceEeeeEeEEEEEecccccchhhhhhccccCcCcccccCC-CCCCcc------------eEEEEecchHHHHHHHHHHHh
Confidence            4688999999999995     8899999999999999976 555677            56899999999999999998 


Q ss_pred             ccCccccccccccC
Q psy16471         94 IMDLCIECQANQAS  107 (153)
Q Consensus        94 ~~~~CpiC~~~~~~  107 (153)
                      +++.||.+++.+..
T Consensus        69 Tk~~CPld~q~w~~   82 (88)
T COG5194          69 TKGVCPLDRQTWVL   82 (88)
T ss_pred             hCCCCCCCCceeEE
Confidence            89999999999833

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=99.52  E-value=5.6e-15  Score=104.09  Aligned_cols=70  Identities=26%  Similarity=0.476  Sum_probs=62.5

Q ss_pred             ccccceEEEEEEEeE------EeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-
Q psy16471         21 KGEKKRFDVKKWNAV------ALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-   93 (153)
Q Consensus        21 ~~~~~~~~vk~w~~v------a~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-   93 (153)
                      .+++++..|+.|.|.      +.+++..++..|+.|+.+.++                |+++||.|+|.||+|||.+|+ 
T Consensus         3 v~i~~w~~va~W~Wd~~~dd~CgICr~~fdg~Cp~Ck~Pgd~----------------Cplv~g~C~H~FH~hCI~kWl~   66 (85)
T PF12861_consen    3 VKIKEWHAVATWKWDVANDDVCGICRMPFDGCCPDCKFPGDD----------------CPLVWGKCSHNFHMHCILKWLS   66 (85)
T ss_pred             eEEEEEEEEEEEEEecCCCCceeeEecccccCCCCccCCCCC----------------CceeeccCccHHHHHHHHHHHc
Confidence            568899999999994      799999999999999999765                477899999999999999996 


Q ss_pred             ---ccCcccccccccc
Q psy16471         94 ---IMDLCIECQANQA  106 (153)
Q Consensus        94 ---~~~~CpiC~~~~~  106 (153)
                         .+..||+||+.+.
T Consensus        67 ~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   67 TQSSKGQCPMCRQPWK   82 (85)
T ss_pred             cccCCCCCCCcCCeee
Confidence               4689999999883

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.47  E-value=1.6e-14  Score=89.17  Aligned_cols=44  Identities=34%  Similarity=0.699  Sum_probs=36.8

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCC
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN  143 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr  143 (153)
                      +.|+||+.++..+.    .++.++|||.||.+||.+|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~----~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGE----KVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTS----CEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCC----eEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            36899999996533    566777999999999999999999999997

...

>KOG1493|consensus

Probab=99.28  E-value=6.7e-13  Score=91.78  Aligned_cols=69  Identities=28%  Similarity=0.459  Sum_probs=62.7

Q ss_pred             ccccceEEEEEEEeE-----EeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--
Q psy16471         21 KGEKKRFDVKKWNAV-----ALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--   93 (153)
Q Consensus        21 ~~~~~~~~vk~w~~v-----a~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--   93 (153)
                      .++++...+..|.|+     +.+++-.++..|+.|+.+.+|                ||+|||.|+|.||.|||.+|+  
T Consensus         3 vki~~~h~~a~wtW~~~~e~CGiCRm~Fdg~Cp~Ck~PgDd----------------CPLv~G~C~h~fh~hCI~~wl~~   66 (84)
T KOG1493|consen    3 VKIKRYHAVAWWTWDAPDETCGICRMPFDGCCPDCKLPGDD----------------CPLVWGYCLHAFHAHCILKWLNT   66 (84)
T ss_pred             eEEEEEEEEEEEEEcCCCCccceEecccCCcCCCCcCCCCC----------------CccHHHHHHHHHHHHHHHHHhcC
Confidence            567888999999997     789999999999999999876                578999999999999999996  


Q ss_pred             --ccCccccccccc
Q psy16471         94 --IMDLCIECQANQ  105 (153)
Q Consensus        94 --~~~~CpiC~~~~  105 (153)
                        +...||.||+.+
T Consensus        67 ~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   67 PTSQGQCPMCRQTW   80 (84)
T ss_pred             ccccccCCcchhee
Confidence              667899999987

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.16  E-value=9e-12  Score=85.18  Aligned_cols=66  Identities=32%  Similarity=0.652  Sum_probs=55.8

Q ss_pred             ccccceEEEEEEEeE-----EeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-c
Q psy16471         21 KGEKKRFDVKKWNAV-----ALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-I   94 (153)
Q Consensus        21 ~~~~~~~~vk~w~~v-----a~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~   94 (153)
                      ++++++.+|+.|+|.     ++++.+...+.|+-|+.+.++    |            ++++|.|+|.||++||.+|+ .
T Consensus         2 ~~i~~~~~v~~~~~~~~~d~C~IC~~~l~~~~~~~~~~~~~----~------------~i~~~~C~H~FH~~Ci~~Wl~~   65 (73)
T PF12678_consen    2 FKIKKWNAVALWSWDIADDNCAICREPLEDPCPECQAPQDE----C------------PIVWGPCGHIFHFHCISQWLKQ   65 (73)
T ss_dssp             EEEEEEEEEEEEEESSCCSBETTTTSBTTSTTCCHHHCTTT----S-------------EEEETTSEEEEHHHHHHHHTT
T ss_pred             eEEEEEEEEEEEeecCcCCcccccChhhhChhhhhcCCccc----c------------ceEecccCCCEEHHHHHHHHhc
Confidence            578999999999985     889999999999999887633    3            34688999999999999997 7


Q ss_pred             cCcccccc
Q psy16471         95 MDLCIECQ  102 (153)
Q Consensus        95 ~~~CpiC~  102 (153)
                      ...||+||
T Consensus        66 ~~~CP~CR   73 (73)
T PF12678_consen   66 NNTCPLCR   73 (73)
T ss_dssp             SSB-TTSS
T ss_pred             CCcCCCCC
Confidence            77999996

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.03  E-value=1.5e-10  Score=95.47  Aligned_cols=53  Identities=23%  Similarity=0.500  Sum_probs=42.4

Q ss_pred             cCccccccccccCCC-CccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471         95 MDLCIECQANQASTT-SEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~-~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ...||||+..+...+ ......+.++|+|.||..||.+|++.+++||+||.++.
T Consensus       174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            467999999875432 11223567789999999999999999999999999865

>KOG4628|consensus

Probab=98.98  E-value=2.1e-10  Score=98.84  Aligned_cols=46  Identities=30%  Similarity=0.775  Sum_probs=41.5

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCC-CCCCCCC
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLDNRE  145 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~-CP~Cr~~  145 (153)
                      ..|.||+++|..++    .++.++|+|.||..||+.||....+ ||+|+++
T Consensus       230 ~~CaIClEdY~~Gd----klRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~d  276 (348)
T KOG4628|consen  230 DTCAICLEDYEKGD----KLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRD  276 (348)
T ss_pred             ceEEEeecccccCC----eeeEecCCCchhhccchhhHhhcCccCCCCCCc
Confidence            38999999998887    7788999999999999999988754 9999986

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.92  E-value=9.6e-10  Score=65.57  Aligned_cols=44  Identities=32%  Similarity=0.689  Sum_probs=35.8

Q ss_pred             ccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCc
Q psy16471         97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW  146 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w  146 (153)
                      .|++|...+..      .+..+.|||.||..|+.+|++. +..||+||.++
T Consensus         1 ~C~iC~~~~~~------~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFRE------PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhC------ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            37888887721      4566679999999999999998 77899999863

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.91  E-value=1.1e-09  Score=65.90  Aligned_cols=39  Identities=28%  Similarity=0.674  Sum_probs=32.7

Q ss_pred             cccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCC
Q psy16471         98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  142 (153)
Q Consensus        98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~C  142 (153)
                      ||||.+.+.+      +++.++|||.|+..||.+|++.+..||+|
T Consensus         1 C~iC~~~~~~------~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD------PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS------EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC------cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            6888877644      66789999999999999999999999998

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=2.5e-09  Score=92.91  Aligned_cols=54  Identities=26%  Similarity=0.559  Sum_probs=41.4

Q ss_pred             ccCccccccccccCCC------CccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471         94 IMDLCIECQANQASTT------SEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~------~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ..+.|.||+..+-..+      +-+-.+..++|||.||.+|+..|++++++||+||++--
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence            4557888888742211      12234577999999999999999999999999999843

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.68  E-value=1.6e-08  Score=63.76  Aligned_cols=44  Identities=30%  Similarity=0.577  Sum_probs=36.7

Q ss_pred             CccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCc
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW  146 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w  146 (153)
                      ..|++|.....       .++..+|||. |...|+.+|++.+..||+||++.
T Consensus         3 ~~C~iC~~~~~-------~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i   47 (50)
T PF13920_consen    3 EECPICFENPR-------DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPI   47 (50)
T ss_dssp             SB-TTTSSSBS-------SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-
T ss_pred             CCCccCCccCC-------ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhh
Confidence            56889998752       3577899999 99999999999999999999984

...

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.63  E-value=3.2e-08  Score=59.60  Aligned_cols=39  Identities=31%  Similarity=0.704  Sum_probs=32.6

Q ss_pred             cccccccccCCCCccceEEeeeecceechHHHHHHHc--CCCCCCCC
Q psy16471         98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLD  142 (153)
Q Consensus        98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~--~~~~CP~C  142 (153)
                      |+||+..+..      ....++|||.|+..||.+|++  ....||+|
T Consensus         1 C~iC~~~~~~------~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFED------PVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSS------EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccC------CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            6888888754      336899999999999999999  45679998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PHA02926 zinc finger-like protein; Provisional

Probab=98.62  E-value=2.1e-08  Score=81.99  Aligned_cols=58  Identities=24%  Similarity=0.456  Sum_probs=44.1

Q ss_pred             ccCccccccccccCC--CCccceEEeeeecceechHHHHHHHcCC------CCCCCCCCCcccccc
Q psy16471         94 IMDLCIECQANQAST--TSEECTVAWGVCNHAFHFHCISRWLKTR------QVCPLDNREWEFQKY  151 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~--~~~~c~~~~~~C~H~FH~~CI~~Wl~~~------~~CP~Cr~~w~~~~~  151 (153)
                      ....|+||++.....  +++.-..++++|+|.|+..||.+|.+++      .+||+||..+.+-..
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p  234 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITM  234 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence            356799999876332  3333355788999999999999999863      459999999876543

>smart00184 RING Ring finger

Probab=98.61  E-value=3.2e-08  Score=56.89  Aligned_cols=38  Identities=32%  Similarity=0.735  Sum_probs=30.2

Q ss_pred             cccccccccCCCCccceEEeeeecceechHHHHHHHc-CCCCCCCC
Q psy16471         98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLD  142 (153)
Q Consensus        98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~-~~~~CP~C  142 (153)
                      |++|....  .     .++.++|||.||..||.+|++ .+..||+|
T Consensus         1 C~iC~~~~--~-----~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL--K-----DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC--C-----CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            56777662  1     446678999999999999998 56779987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=2.9e-08  Score=84.39  Aligned_cols=46  Identities=26%  Similarity=0.635  Sum_probs=39.6

Q ss_pred             ccccccccccCCCCccceEEeeeecceechHHHHHHHc-CCCCCCCCCCCc
Q psy16471         97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREW  146 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~w  146 (153)
                      .|.||..++.-++    ..+.++|.|.||..||++|+. .+..||.||.+-
T Consensus       325 eCaICms~fiK~d----~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~i  371 (374)
T COG5540         325 ECAICMSNFIKND----RLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI  371 (374)
T ss_pred             eEEEEhhhhcccc----eEEEeccCceechhHHHHHHhhhcccCCccCCCC
Confidence            5899999995443    578899999999999999998 678899999873

>KOG0802|consensus

Probab=98.57  E-value=2e-08  Score=90.85  Aligned_cols=50  Identities=30%  Similarity=0.598  Sum_probs=43.1

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCC
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE  145 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~  145 (153)
                      ....|+||++.....++  -.+..++|+|+||..|+.+|+++.++||+||..
T Consensus       290 ~~~~C~IC~e~l~~~~~--~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~  339 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHN--ITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTV  339 (543)
T ss_pred             cCCeeeeechhhccccc--cccceeecccchHHHHHHHHHHHhCcCCcchhh
Confidence            46789999999976543  346789999999999999999999999999983

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.53  E-value=6.9e-08  Score=59.59  Aligned_cols=44  Identities=18%  Similarity=0.431  Sum_probs=36.7

Q ss_pred             ccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCC
Q psy16471         97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR  144 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~  144 (153)
                      .|++|...+...    -...+++|||+|...||.+.......||+||+
T Consensus         1 ~C~~C~~~~~~~----~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEE----RRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCC----CCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            378999998222    26788999999999999999966778999985

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.53  E-value=9.4e-09  Score=63.17  Aligned_cols=43  Identities=35%  Similarity=0.639  Sum_probs=31.7

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccccc
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQ  102 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~  102 (153)
                      |.|+||++++.+.             +  .++.-.|+|.||..|+.+|. .+..||+||
T Consensus         1 d~C~IC~~~~~~~-------------~--~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDG-------------E--KVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTT-------------S--CEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCC-------------C--eEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            6899999999641             1  11223499999999999997 677999996

...

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.44  E-value=1.5e-07  Score=75.53  Aligned_cols=48  Identities=21%  Similarity=0.470  Sum_probs=37.4

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcC----------------CCCCCCCCCCcccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT----------------RQVCPLDNREWEFQ  149 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~----------------~~~CP~Cr~~w~~~  149 (153)
                      ...|+||...+..      + +...|||.|+..||.+|+..                ...||+||++....
T Consensus        18 ~~~CpICld~~~d------P-VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         18 DFDCNICLDQVRD------P-VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             ccCCccCCCcCCC------c-EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            3569999988743      2 44689999999999999853                24799999987543

>KOG0317|consensus

Probab=98.44  E-value=9.8e-08  Score=80.34  Aligned_cols=51  Identities=25%  Similarity=0.614  Sum_probs=43.3

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY  151 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~  151 (153)
                      ..+.|.+|+.+...-       ...+|||.|...||.+|+..+..||+||.++..+|.
T Consensus       238 a~~kC~LCLe~~~~p-------SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  238 ATRKCSLCLENRSNP-------SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV  288 (293)
T ss_pred             CCCceEEEecCCCCC-------CcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence            346799999887432       347899999999999999999999999999888775

>KOG0320|consensus

Probab=98.44  E-value=8.8e-08  Score=75.87  Aligned_cols=52  Identities=21%  Similarity=0.379  Sum_probs=44.0

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK  150 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~  150 (153)
                      ..-.||||+..+...     .++..+|||+|...||..=++....||+|++.-..+.
T Consensus       130 ~~~~CPiCl~~~sek-----~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~  181 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEK-----VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ  181 (187)
T ss_pred             cccCCCceecchhhc-----cccccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence            345699999999766     6688999999999999999999999999998644433

>smart00504 Ubox Modified RING finger domain

Probab=98.41  E-value=3.3e-07  Score=59.48  Aligned_cols=45  Identities=13%  Similarity=0.256  Sum_probs=38.4

Q ss_pred             ccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471         97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  148 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~  148 (153)
                      .||+|...+..      + +..+|||+|.+.||.+|++.+.+||+|+.+...
T Consensus         3 ~Cpi~~~~~~~------P-v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        3 LCPISLEVMKD------P-VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             CCcCCCCcCCC------C-EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            58999988754      2 556899999999999999999999999988654

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.36  E-value=3.6e-07  Score=56.25  Aligned_cols=38  Identities=26%  Similarity=0.439  Sum_probs=28.1

Q ss_pred             cccccccccCCCCccceEEeeeecceechHHHHHHHcCC----CCCCCC
Q psy16471         98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLD  142 (153)
Q Consensus        98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~----~~CP~C  142 (153)
                      ||||+..+..       ++.++|||+|...||.+|.+..    -.||.|
T Consensus         1 CpiC~~~~~~-------Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKD-------PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SS-------EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCC-------ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            7889888743       4778999999999999999874    359987

>KOG4628|consensus

Probab=98.13  E-value=8e-07  Score=76.85  Aligned_cols=50  Identities=26%  Similarity=0.505  Sum_probs=38.9

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCCC
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQASTT  109 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~~  109 (153)
                      ++|+||.++|.+....-.+               .|.|.||..||..|+  .+..||+|.++.....
T Consensus       230 ~~CaIClEdY~~GdklRiL---------------PC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~  281 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRIL---------------PCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS  281 (348)
T ss_pred             ceEEEeecccccCCeeeEe---------------cCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence            5999999999864433223               399999999999998  4456999999884443

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.06  E-value=2.6e-06  Score=74.93  Aligned_cols=49  Identities=27%  Similarity=0.414  Sum_probs=40.3

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ  149 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~  149 (153)
                      ..-.|+||...+..      + +.++|||.|+..||.+|+.....||+||.+....
T Consensus        25 ~~l~C~IC~d~~~~------P-vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        25 TSLRCHICKDFFDV------P-VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             cccCCCcCchhhhC------c-cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            34579999987733      2 4679999999999999999988999999986543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1734|consensus

Probab=98.03  E-value=1e-06  Score=74.01  Aligned_cols=61  Identities=25%  Similarity=0.530  Sum_probs=46.7

Q ss_pred             cccccCccccccccccCCCCcc---ceEEeeeecceechHHHHHHHcC--CCCCCCCCCCcccccc
Q psy16471         91 RNHIMDLCIECQANQASTTSEE---CTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWEFQKY  151 (153)
Q Consensus        91 ~w~~~~~CpiC~~~~~~~~~~~---c~~~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~w~~~~~  151 (153)
                      +.+++..|.+|.+.+.....++   .-...++|+|+||..||.-|.--  +++||.|+..-+++.+
T Consensus       220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rm  285 (328)
T KOG1734|consen  220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRM  285 (328)
T ss_pred             CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhh
Confidence            4457889999999885443222   24467999999999999999864  6899999987776654

>KOG0827|consensus

Probab=98.01  E-value=2.3e-06  Score=74.93  Aligned_cols=47  Identities=28%  Similarity=0.731  Sum_probs=35.8

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC---CCCCCCC
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDN  143 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~---~~CP~Cr  143 (153)
                      .++.|.||..-+   +.++-...++.|||+||..|+.+|++..   ..||+|+
T Consensus         3 i~A~C~Ic~d~~---p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~   52 (465)
T KOG0827|consen    3 IMAECHICIDGR---PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ   52 (465)
T ss_pred             ccceeeEeccCC---ccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence            467899994333   2233355668899999999999999983   5799999

>KOG0823|consensus

Probab=97.98  E-value=4.4e-06  Score=68.51  Aligned_cols=48  Identities=27%  Similarity=0.616  Sum_probs=36.8

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHcCC---CCCCCCCCCccccc
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDNREWEFQK  150 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~---~~CP~Cr~~w~~~~  150 (153)
                      --|-||+....+      + +..-|||.|...||.+||.++   +.||+|+++....+
T Consensus        48 FdCNICLd~akd------P-VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~   98 (230)
T KOG0823|consen   48 FDCNICLDLAKD------P-VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT   98 (230)
T ss_pred             eeeeeeccccCC------C-EEeecccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence            346788876533      3 456699999999999999984   45999999876544

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.94  E-value=7.1e-06  Score=50.92  Aligned_cols=35  Identities=23%  Similarity=0.458  Sum_probs=21.0

Q ss_pred             cccccccccCCCCccceEEeeeecceechHHHHHHHcCC
Q psy16471         98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR  136 (153)
Q Consensus        98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~  136 (153)
                      ||||++ +.+.   +=.++.++|||+|...||+++++.+
T Consensus         1 CpIc~e-~~~~---~n~P~~L~CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTE---ENPPMVLPCGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TT---SS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred             CCcccc-ccCC---CCCCEEEeCccHHHHHHHHHHHhcC
Confidence            799999 6221   1156778899999999999999864

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.87  E-value=1.2e-05  Score=51.11  Aligned_cols=41  Identities=20%  Similarity=0.604  Sum_probs=29.3

Q ss_pred             cccccccccCCCCccceEEeeeec-----ceechHHHHHHHcCC--CCCCCCC
Q psy16471         98 CIECQANQASTTSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDN  143 (153)
Q Consensus        98 CpiC~~~~~~~~~~~c~~~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr  143 (153)
                      |-||+...+.+     .+...+|.     |.||..||.+|+..+  .+||+|+
T Consensus         2 CrIC~~~~~~~-----~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        2 CRICHDEGDEG-----DPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             ccCCCCCCCCC-----CeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            66787622111     33456785     999999999999764  4899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.86  E-value=2.4e-06  Score=57.95  Aligned_cols=51  Identities=22%  Similarity=0.477  Sum_probs=23.8

Q ss_pred             CccccccccccCCCCccceE-Ee--eeecceechHHHHHHHcC-----------CCCCCCCCCCccc
Q psy16471         96 DLCIECQANQASTTSEECTV-AW--GVCNHAFHFHCISRWLKT-----------RQVCPLDNREWEF  148 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~-~~--~~C~H~FH~~CI~~Wl~~-----------~~~CP~Cr~~w~~  148 (153)
                      ..|+||.......  ++-+. +-  ..|+..||..||.+||+.           .++||.|+++..+
T Consensus         3 ~~C~IC~~~~~~~--~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    3 LECGICYSYRLDD--GEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             -S-SSS--SS-TT-------B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCcCCcEecCC--CCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            3588898876421  11111 22  479999999999999974           1359999988654

>KOG0828|consensus

Probab=97.80  E-value=5.8e-06  Score=74.32  Aligned_cols=50  Identities=26%  Similarity=0.742  Sum_probs=37.6

Q ss_pred             CccccccccccCCC-CccceE---------EeeeecceechHHHHHHHcCCC-CCCCCCCC
Q psy16471         96 DLCIECQANQASTT-SEECTV---------AWGVCNHAFHFHCISRWLKTRQ-VCPLDNRE  145 (153)
Q Consensus        96 ~~CpiC~~~~~~~~-~~~c~~---------~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~  145 (153)
                      .-|+||.++++-.. +.+|.+         ...+|.|+||..|+.+|+.+.+ .||.||.+
T Consensus       572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~p  632 (636)
T KOG0828|consen  572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCP  632 (636)
T ss_pred             ccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCC
Confidence            45999999884321 112322         3468999999999999999655 89999987

>PHA02929 N1R/p28-like protein; Provisional

Probab=97.69  E-value=1.3e-05  Score=66.26  Aligned_cols=54  Identities=26%  Similarity=0.467  Sum_probs=38.9

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccccccccc
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQA  106 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~  106 (153)
                      .++.|+||.+.+.+.-..          ..-..+-..|+|.||..|+.+|. ....||+||.++.
T Consensus       173 ~~~eC~ICle~~~~~~~~----------~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        173 KDKECAICMEKVYDKEIK----------NMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCccCCcccccCccc----------cccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            357899999987652110          00011234699999999999997 7789999999873

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.61  E-value=1.6e-05  Score=76.03  Aligned_cols=31  Identities=35%  Similarity=0.954  Sum_probs=27.1

Q ss_pred             eeecceechHHHHHHHcC--CCCCCCCCCCccc
Q psy16471        118 GVCNHAFHFHCISRWLKT--RQVCPLDNREWEF  148 (153)
Q Consensus       118 ~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~w~~  148 (153)
                      +.|.|-||..||.+|+++  +++||+||.+..+
T Consensus      1492 ~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219        1492 ATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred             chhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence            469999999999999998  5789999998654

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.57  E-value=3.1e-05  Score=65.98  Aligned_cols=35  Identities=29%  Similarity=0.452  Sum_probs=31.3

Q ss_pred             eEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471        114 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  148 (153)
Q Consensus       114 ~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~  148 (153)
                      +++...|||.|..-||...|.+++.||+||.++.+
T Consensus        37 ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          37 IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             cceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence            44668899999999999999999999999998653

>KOG2164|consensus

Probab=97.55  E-value=3.9e-05  Score=69.03  Aligned_cols=47  Identities=19%  Similarity=0.362  Sum_probs=37.2

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-----CCCCCCCCCccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-----QVCPLDNREWEF  148 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-----~~CP~Cr~~w~~  148 (153)
                      ...||||+.+..       ..+.+.|||+|+..||-+.+.+.     ..|||||....+
T Consensus       186 ~~~CPICL~~~~-------~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPS-------VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCC-------cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            567999998862       33456699999999999988764     579999976544

>KOG0804|consensus

Probab=97.49  E-value=4.9e-05  Score=67.64  Aligned_cols=46  Identities=28%  Similarity=0.668  Sum_probs=36.0

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCC
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR  144 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~  144 (153)
                      .-|.||+|+.-+....+   -++...|.|.||-.|+.+|  ...+||+||-
T Consensus       174 ELPTCpVCLERMD~s~~---gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~  219 (493)
T KOG0804|consen  174 ELPTCPVCLERMDSSTT---GILTILCNHSFHCSCLMKW--WDSSCPVCRY  219 (493)
T ss_pred             cCCCcchhHhhcCcccc---ceeeeecccccchHHHhhc--ccCcChhhhh
Confidence            45789999988844322   3566779999999999999  4567999983

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=4.9e-05  Score=63.57  Aligned_cols=50  Identities=24%  Similarity=0.477  Sum_probs=40.2

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHH-HHcCCCC-CCCCCCCcccccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR-WLKTRQV-CPLDNREWEFQKY  151 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~-Wl~~~~~-CP~Cr~~w~~~~~  151 (153)
                      ...|++|....+.       +....|||+|...||.. |-+.+.. ||+||+.-..++.
T Consensus       215 d~kC~lC~e~~~~-------ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v  266 (271)
T COG5574         215 DYKCFLCLEEPEV-------PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             ccceeeeecccCC-------cccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence            3459999988633       35578999999999999 9988766 9999998776653

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.40  E-value=0.00013  Score=62.33  Aligned_cols=53  Identities=17%  Similarity=0.395  Sum_probs=36.9

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHH-cCCCCCCCCCCCccccc
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNREWEFQK  150 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl-~~~~~CP~Cr~~w~~~~  150 (153)
                      ..||+|......++.-  ......|||.|+..||++.+ .....||.|+......+
T Consensus         4 ~~CP~Ck~~~y~np~~--kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         4 QGCPRCKTTKYRNPSL--KLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCcCCCCCccCccc--ccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            4699999875444311  11223799999999999955 44568999998765443

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0287|consensus

Probab=97.40  E-value=5.5e-05  Score=65.61  Aligned_cols=34  Identities=24%  Similarity=0.442  Sum_probs=29.9

Q ss_pred             eEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471        114 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus       114 ~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ++++.+|+|.|..-||...|..+.+||.|+.++.
T Consensus        35 ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~   68 (442)
T KOG0287|consen   35 IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT   68 (442)
T ss_pred             CceeccccchHHHHHHHHHhccCCCCCceecccc
Confidence            3355679999999999999999999999998854

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=97.35  E-value=4.8e-05  Score=44.81  Aligned_cols=42  Identities=26%  Similarity=0.601  Sum_probs=31.4

Q ss_pred             cccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc--cCcccccccc
Q psy16471         46 NCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI--MDLCIECQAN  104 (153)
Q Consensus        46 ~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~--~~~CpiC~~~  104 (153)
                      .|+||...+.+                 +.....|+|.||..|+.+|..  ...||+|+..
T Consensus         1 ~C~iC~~~~~~-----------------~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFRE-----------------PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhC-----------------ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            48899887622                 122345999999999999973  6779999865

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.28  E-value=0.00031  Score=47.57  Aligned_cols=45  Identities=18%  Similarity=0.269  Sum_probs=32.8

Q ss_pred             ccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCccc
Q psy16471         97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF  148 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~~  148 (153)
                      .|||+..-+.+      + +.+++||+|-+.+|.+||+. +.+||+++.+-..
T Consensus         6 ~CpIt~~lM~d------P-Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    6 LCPITGELMRD------P-VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             B-TTTSSB-SS------E-EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             CCcCcCcHhhC------c-eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            58888877743      3 56789999999999999999 7899999887543

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0825|consensus

Probab=97.25  E-value=5e-05  Score=71.56  Aligned_cols=50  Identities=22%  Similarity=0.520  Sum_probs=41.5

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ...-||+|...+..+.    ......|+|.||.+||..|-+.-++||+||.+|.
T Consensus       122 ~~~~CP~Ci~s~~DqL----~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQL----EESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhhHHHHHHHHHh----hccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence            4566888888875553    4455779999999999999999999999999875

>KOG3970|consensus

Probab=97.21  E-value=0.00015  Score=60.01  Aligned_cols=59  Identities=29%  Similarity=0.467  Sum_probs=47.9

Q ss_pred             ceeeeec----cccc----ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC--------CCCCCCCCCCc
Q psy16471         83 AFHFHCI----SRNH----IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPLDNREW  146 (153)
Q Consensus        83 ~fh~~c~----~~w~----~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~--------~~~CP~Cr~~w  146 (153)
                      ..|--||    .+|+    +++.|..|.....++     ..+.+.|-|.||..|+++|...        .-+||-|..+.
T Consensus        30 ~nHpkCiVQSYLqWL~DsDY~pNC~LC~t~La~g-----dt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei  104 (299)
T KOG3970|consen   30 ANHPKCIVQSYLQWLQDSDYNPNCRLCNTPLASG-----DTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI  104 (299)
T ss_pred             ccCchhhHHHHHHHHhhcCCCCCCceeCCccccC-----cceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence            4577777    6674    999999999999776     3456889999999999999865        24799999874

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=97.15  E-value=0.00013  Score=43.63  Aligned_cols=38  Identities=32%  Similarity=0.701  Sum_probs=28.5

Q ss_pred             ccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccc
Q psy16471         47 CAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIEC  101 (153)
Q Consensus        47 C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC  101 (153)
                      |+||.+.+.+                 +.+.-.|||.|...|+.+|. .+..||+|
T Consensus         1 C~iC~~~~~~-----------------~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD-----------------PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS-----------------EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC-----------------cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            7889887765                 23345799999999999996 67789886

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.00012  Score=62.72  Aligned_cols=46  Identities=24%  Similarity=0.627  Sum_probs=36.0

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccc
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQ  105 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~  105 (153)
                      -.|+||.+++.-      .       +.  ...--|+|.||..|+.+|.  +...||+|+.++
T Consensus       324 veCaICms~fiK------~-------d~--~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~i  371 (374)
T COG5540         324 VECAICMSNFIK------N-------DR--LRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI  371 (374)
T ss_pred             ceEEEEhhhhcc------c-------ce--EEEeccCceechhHHHHHHhhhcccCCccCCCC
Confidence            469999998831      1       10  2334599999999999996  899999999886

>PHA02926 zinc finger-like protein; Provisional

Probab=97.01  E-value=0.00017  Score=59.35  Aligned_cols=53  Identities=25%  Similarity=0.429  Sum_probs=37.2

Q ss_pred             Cccccccccccccc-hhhhhcCCCCCCccccceeccccccceeeeecccccc-------cCcccccccccc
Q psy16471         44 VDNCAICRNHIMDL-CIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI-------MDLCIECQANQA  106 (153)
Q Consensus        44 ~d~C~IC~~~~~d~-c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~-------~~~CpiC~~~~~  106 (153)
                      ++.|+||.+.+.+. .+..+.          ..+-..|+|.|.+.|+.+|..       ...||+||..+.
T Consensus       170 E~eCgICmE~I~eK~~~~eRr----------FGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        170 EKECGICYEVVYSKRLENDRY----------FGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             CCCCccCcccccccccccccc----------ccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            58999999887552 111111          112346999999999999973       245999999874

>KOG0978|consensus

Probab=96.95  E-value=0.00021  Score=66.77  Aligned_cols=48  Identities=23%  Similarity=0.468  Sum_probs=38.6

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-CCCCCCCCCccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWEF  148 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~w~~  148 (153)
                      ..=.||+|-..+.+.       ++..|+|+|+..||..=+.++ ..||.|.+.|-.
T Consensus       642 ~~LkCs~Cn~R~Kd~-------vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDA-------VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             hceeCCCccCchhhH-------HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            344699998776543       567899999999999999986 469999998753

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=96.89  E-value=0.00024  Score=47.85  Aligned_cols=42  Identities=26%  Similarity=0.521  Sum_probs=21.0

Q ss_pred             ccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCc
Q psy16471         97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW  146 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w  146 (153)
                      +|++|..-+..      ++.++.|.|+|...||.+-+.+  .||+|+.+=
T Consensus         9 rCs~C~~~l~~------pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Pa   50 (65)
T PF14835_consen    9 RCSICFDILKE------PVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPA   50 (65)
T ss_dssp             S-SSS-S--SS-------B---SSS--B-TTTGGGGTTT--B-SSS--B-
T ss_pred             CCcHHHHHhcC------CceeccCccHHHHHHhHHhcCC--CCCCcCChH
Confidence            57788766533      6678999999999999886554  499999774

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=96.86  E-value=0.00035  Score=43.78  Aligned_cols=45  Identities=27%  Similarity=0.477  Sum_probs=34.9

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccc-eeeeeccccc-ccCcccccccccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRNH-IMDLCIECQANQA  106 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~-fh~~c~~~w~-~~~~CpiC~~~~~  106 (153)
                      ++.|.||.+...+                  .+...|+|. |-..|..+|. ....||+|+++++
T Consensus         2 ~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD------------------VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS------------------EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc------------------eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            4679999887643                  234569999 9999999997 8889999999873

...

>KOG2177|consensus

Probab=96.84  E-value=0.00045  Score=54.16  Aligned_cols=42  Identities=21%  Similarity=0.383  Sum_probs=35.7

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCC
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN  143 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr  143 (153)
                      .-.||||...+..      + ..++|+|.|...||..+....-.||.||
T Consensus        13 ~~~C~iC~~~~~~------p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr   54 (386)
T KOG2177|consen   13 ELTCPICLEYFRE------P-VLLPCGHNFCRACLTRSWEGPLSCPVCR   54 (386)
T ss_pred             cccChhhHHHhhc------C-ccccccchHhHHHHHHhcCCCcCCcccC
Confidence            4479999999844      2 6789999999999999988656799999

>KOG1645|consensus

Probab=96.75  E-value=0.0011  Score=58.75  Aligned_cols=48  Identities=25%  Similarity=0.621  Sum_probs=37.8

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHcC--CCCCCCCCCC
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNRE  145 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~  145 (153)
                      ..||+|+..|... ++. .++.+.|||.|-..||++||-.  ..+||.|..+
T Consensus         5 ~tcpiclds~~~~-g~h-r~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen    5 TTCPICLDSYTTA-GNH-RIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             ccCceeeeeeeec-Cce-EEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence            5799999998543 222 5678899999999999999952  3579999754

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.00051  Score=60.34  Aligned_cols=57  Identities=21%  Similarity=0.427  Sum_probs=38.5

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQ  105 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~  105 (153)
                      +..|+||++++.++.-+ +.+.+.    +=.+.-=.|||-||+||...|. --..||||+.++
T Consensus       287 D~~C~ICmde~~h~~~~-~~~~~~----~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         287 DRTCTICMDEMFHPDHE-PLPRGL----DMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             CCeEEEecccccCCCCc-cCcccc----cCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence            46899999998764321 111110    1111123499999999999998 556899999884

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.57  E-value=0.0019  Score=42.24  Aligned_cols=42  Identities=21%  Similarity=0.400  Sum_probs=28.8

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC--CCCCC
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPL  141 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~--~~CP~  141 (153)
                      .+..||+.+..+.+      ++....|||+|=+.-|.++|+.+  ..||+
T Consensus        10 ~~~~CPiT~~~~~~------PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFED------PVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SS------EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhC------CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            45679999988754      77778999999999999999543  46998

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=96.49  E-value=0.0012  Score=46.43  Aligned_cols=33  Identities=24%  Similarity=0.526  Sum_probs=27.6

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHH
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR  131 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~  131 (153)
                      ....|++|.+.+...     ..+..+|||+||..|+.+
T Consensus        77 ~~~~C~vC~k~l~~~-----~f~~~p~~~v~H~~C~~r  109 (109)
T PF10367_consen   77 ESTKCSVCGKPLGNS-----VFVVFPCGHVVHYSCIKR  109 (109)
T ss_pred             CCCCccCcCCcCCCc-----eEEEeCCCeEEecccccC
Confidence            456799999999665     778889999999999863

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1039|consensus

Probab=96.48  E-value=0.0014  Score=56.94  Aligned_cols=54  Identities=26%  Similarity=0.529  Sum_probs=36.8

Q ss_pred             cCccccccccccCCC-CccceEEeeeecceechHHHHHHHc--C-----CCCCCCCCCCccc
Q psy16471         95 MDLCIECQANQASTT-SEECTVAWGVCNHAFHFHCISRWLK--T-----RQVCPLDNREWEF  148 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~-~~~c~~~~~~C~H~FH~~CI~~Wl~--~-----~~~CP~Cr~~w~~  148 (153)
                      ...|.||.+...... .+.-..++++|.|.|...||.+|-.  +     ...||.||..-++
T Consensus       161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~  222 (344)
T KOG1039|consen  161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF  222 (344)
T ss_pred             cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence            445777777764432 1111234578999999999999994  3     4679999976544

>KOG4445|consensus

Probab=96.29  E-value=0.0012  Score=56.57  Aligned_cols=55  Identities=29%  Similarity=0.667  Sum_probs=43.8

Q ss_pred             ccccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-----------------------CCCCCCCCCCccc
Q psy16471         92 NHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-----------------------RQVCPLDNREWEF  148 (153)
Q Consensus        92 w~~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-----------------------~~~CP~Cr~~w~~  148 (153)
                      .+.+.-|.||+-.|.+++    ......|-|.||++|+.+.|..                       ...||+||-.-++
T Consensus       112 n~p~gqCvICLygfa~~~----~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~  187 (368)
T KOG4445|consen  112 NHPNGQCVICLYGFASSP----AFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI  187 (368)
T ss_pred             CCCCCceEEEEEeecCCC----ceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence            358889999999997765    6788899999999999998852                       2359999977655


Q ss_pred             cc
Q psy16471        149 QK  150 (153)
Q Consensus       149 ~~  150 (153)
                      ..
T Consensus       188 e~  189 (368)
T KOG4445|consen  188 EE  189 (368)
T ss_pred             cc
Confidence            43

>KOG1941|consensus

Probab=96.19  E-value=0.0014  Score=57.93  Aligned_cols=45  Identities=22%  Similarity=0.519  Sum_probs=34.3

Q ss_pred             ccccccccccCCCCccceEEeeeecceechHHHHHHHcCC--CCCCCCCC
Q psy16471         97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNR  144 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~--~~CP~Cr~  144 (153)
                      .|..|.+.+...+   ...-.++|.|+||..|+.+.|+++  .+||-||+
T Consensus       367 ~Cg~CGe~~Glk~---e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  367 YCGLCGESIGLKN---ERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhcCCc---ccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            3777777763331   245568999999999999999886  57999993

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=96.15  E-value=0.0012  Score=53.21  Aligned_cols=45  Identities=24%  Similarity=0.621  Sum_probs=35.1

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc-----------------cCccccccccccC
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI-----------------MDLCIECQANQAS  107 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~-----------------~~~CpiC~~~~~~  107 (153)
                      -.|+||.+.+.+.                  +.-.|+|.|...|+.+|..                 ...||+|+.++..
T Consensus        19 ~~CpICld~~~dP------------------VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         19 FDCNICLDQVRDP------------------VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             cCCccCCCcCCCc------------------EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            5799999887652                  1236999999999999851                 3579999998854

>KOG0827|consensus

Probab=95.86  E-value=0.0017  Score=57.21  Aligned_cols=26  Identities=35%  Similarity=0.740  Sum_probs=23.1

Q ss_pred             ccccccceeeeeccccc----ccCcccccc
Q psy16471         77 WGVCNHAFHFHCISRNH----IMDLCIECQ  102 (153)
Q Consensus        77 ~g~C~H~fh~~c~~~w~----~~~~CpiC~  102 (153)
                      -|.|||.||.-|+.+|-    +++.||||+
T Consensus        23 i~~cGhifh~~cl~qwfe~~Ps~R~cpic~   52 (465)
T KOG0827|consen   23 IGTCGHIFHTTCLTQWFEGDPSNRGCPICQ   52 (465)
T ss_pred             ccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence            57799999999999994    667899999

>KOG0824|consensus

Probab=95.80  E-value=0.0037  Score=53.45  Aligned_cols=32  Identities=22%  Similarity=0.394  Sum_probs=26.5

Q ss_pred             EeeeecceechHHHHHHHcCC-CCCCCCCCCcc
Q psy16471        116 AWGVCNHAFHFHCISRWLKTR-QVCPLDNREWE  147 (153)
Q Consensus       116 ~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~w~  147 (153)
                      +.+.|+|.|.+-||.-=++.. .+||+||.+..
T Consensus        21 v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid   53 (324)
T KOG0824|consen   21 VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPID   53 (324)
T ss_pred             ccccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence            678899999999998766664 56999998864

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.62  E-value=0.0042  Score=36.88  Aligned_cols=38  Identities=26%  Similarity=0.514  Sum_probs=28.1

Q ss_pred             ccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---ccCccccc
Q psy16471         47 CAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---IMDLCIEC  101 (153)
Q Consensus        47 C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---~~~~CpiC  101 (153)
                      |+||.+.+.+.-                 ..-.|+|.|...|+.+|.   ....||.|
T Consensus         1 C~iC~~~~~~~~-----------------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV-----------------ILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE-----------------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC-----------------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            788988876532                 134699999999999885   44567765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG4172|consensus

Probab=95.58  E-value=0.0033  Score=41.27  Aligned_cols=32  Identities=22%  Similarity=0.447  Sum_probs=24.3

Q ss_pred             Eeeeecce-echHHHHHHHc-CCCCCCCCCCCcc
Q psy16471        116 AWGVCNHA-FHFHCISRWLK-TRQVCPLDNREWE  147 (153)
Q Consensus       116 ~~~~C~H~-FH~~CI~~Wl~-~~~~CP~Cr~~w~  147 (153)
                      ++-.|||. ..++|-.+-++ ...+||+||++-+
T Consensus        21 VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen   21 VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            44569997 67888766554 7899999999844

>KOG0802|consensus

Probab=95.54  E-value=0.0021  Score=58.48  Aligned_cols=49  Identities=22%  Similarity=0.392  Sum_probs=36.9

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQ  105 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~  105 (153)
                      .+.|+||++.+...--             -+..--.|+|.||..|+.+|. ....||+|+..+
T Consensus       291 ~~~C~IC~e~l~~~~~-------------~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  291 DELCIICLEELHSGHN-------------ITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             CCeeeeechhhccccc-------------cccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence            6899999999864211             011123599999999999997 778999999844

>KOG0297|consensus

Probab=95.41  E-value=0.0071  Score=53.14  Aligned_cols=61  Identities=25%  Similarity=0.412  Sum_probs=44.4

Q ss_pred             cceeeeeccccc-ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471         82 HAFHFHCISRNH-IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  148 (153)
Q Consensus        82 H~fh~~c~~~w~-~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~  148 (153)
                      +.|++....+.. .+-.||+|.....+-      +....|||.|...||.+|+..++.||.|+.+=.+
T Consensus         7 ~~~~~~~~~~~~~~~l~C~~C~~vl~~p------~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~   68 (391)
T KOG0297|consen    7 MGFDLKHLGRPLDENLLCPICMSVLRDP------VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQ   68 (391)
T ss_pred             ccccccccCCCCcccccCccccccccCC------CCCCCCCCcccccccchhhccCcCCcccccccch
Confidence            344444444443 556799999887442      1225899999999999999999999999876443

>KOG0804|consensus

Probab=95.32  E-value=0.0096  Score=53.35  Aligned_cols=76  Identities=21%  Similarity=0.485  Sum_probs=47.7

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccccCCC----------Cccce
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTT----------SEECT  114 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~~~~~----------~~~c~  114 (153)
                      -+|++|.+.|++              +.-.++.-.|+|+||-.|+.+|- ...||+||.-....+          ..+=.
T Consensus       176 PTCpVCLERMD~--------------s~~gi~t~~c~Hsfh~~cl~~w~-~~scpvcR~~q~p~~ve~~~c~~c~~~~~L  240 (493)
T KOG0804|consen  176 PTCPVCLERMDS--------------STTGILTILCNHSFHCSCLMKWW-DSSCPVCRYCQSPSVVESSLCLACGCTEDL  240 (493)
T ss_pred             CCcchhHhhcCc--------------cccceeeeecccccchHHHhhcc-cCcChhhhhhcCcchhhhhhhhhhcccccE
Confidence            589999998864              22245566799999999999994 335777664433110          01115


Q ss_pred             EEeeeecce----ech-HHHHHHHcC
Q psy16471        115 VAWGVCNHA----FHF-HCISRWLKT  135 (153)
Q Consensus       115 ~~~~~C~H~----FH~-~CI~~Wl~~  135 (153)
                      ++.+.|||+    |+. |=+.-|-++
T Consensus       241 wicliCg~vgcgrY~eghA~rHweet  266 (493)
T KOG0804|consen  241 WICLICGNVGCGRYKEGHARRHWEET  266 (493)
T ss_pred             EEEEEccceecccccchhHHHHHHhh
Confidence            567888887    332 344455544

>KOG0311|consensus

Probab=95.23  E-value=0.0023  Score=55.67  Aligned_cols=44  Identities=27%  Similarity=0.567  Sum_probs=35.4

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCC
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNRE  145 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~  145 (153)
                      -.||||+.-+..      .+....|.|-|.+.||.+=++. ++.||.||+.
T Consensus        44 v~c~icl~llk~------tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~   88 (381)
T KOG0311|consen   44 VICPICLSLLKK------TMTTKECLHRFCFDCIWKALRSGNNECPTCRKK   88 (381)
T ss_pred             hccHHHHHHHHh------hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhh
Confidence            458888877643      3456789999999999998876 6789999975

>KOG0309|consensus

Probab=95.20  E-value=0.011  Score=56.21  Aligned_cols=39  Identities=31%  Similarity=0.792  Sum_probs=31.4

Q ss_pred             cccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCC
Q psy16471         98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL  141 (153)
Q Consensus        98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~  141 (153)
                      |.+|--.+...     ..+.+.|+|+.|..|..+|+++...||.
T Consensus      1031 C~~C~l~V~gs-----s~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1031 CAICHLAVRGS-----SNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             eeeEeeEeecc-----chhhccccccccHHHHHHHHhcCCcCCC
Confidence            66666555433     5577899999999999999999999994

>KOG2114|consensus

Probab=95.16  E-value=0.01  Score=56.63  Aligned_cols=41  Identities=24%  Similarity=0.619  Sum_probs=33.1

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCC
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE  145 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~  145 (153)
                      ..|.+|....+-      +.|--.|||.||.||+.   +....||-|+.+
T Consensus       841 skCs~C~~~Ldl------P~VhF~CgHsyHqhC~e---~~~~~CP~C~~e  881 (933)
T KOG2114|consen  841 SKCSACEGTLDL------PFVHFLCGHSYHQHCLE---DKEDKCPKCLPE  881 (933)
T ss_pred             eeecccCCcccc------ceeeeecccHHHHHhhc---cCcccCCccchh
Confidence            358888877633      67888999999999999   556779999974

>KOG4265|consensus

Probab=95.10  E-value=0.015  Score=50.62  Aligned_cols=46  Identities=17%  Similarity=0.351  Sum_probs=36.3

Q ss_pred             cCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCcc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ...|.||+....+       .+.++|.|. ....|-+.-.-+.+.|||||++..
T Consensus       290 gkeCVIClse~rd-------t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~  336 (349)
T KOG4265|consen  290 GKECVICLSESRD-------TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE  336 (349)
T ss_pred             CCeeEEEecCCcc-------eEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence            4467888876533       367899998 899999988777778999999864

>smart00184 RING Ring finger

Probab=95.07  E-value=0.0049  Score=34.64  Aligned_cols=23  Identities=30%  Similarity=0.629  Sum_probs=18.9

Q ss_pred             ccccceeeeeccccc--ccCccccc
Q psy16471         79 VCNHAFHFHCISRNH--IMDLCIEC  101 (153)
Q Consensus        79 ~C~H~fh~~c~~~w~--~~~~CpiC  101 (153)
                      .|+|.||..|+.+|.  ....||.|
T Consensus        15 ~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184       15 PCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             cCCChHHHHHHHHHHHhCcCCCCCC
Confidence            599999999999996  45568875

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0823|consensus

Probab=94.96  E-value=0.01  Score=48.86  Aligned_cols=46  Identities=24%  Similarity=0.500  Sum_probs=36.1

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc----ccCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH----IMDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~----~~~~CpiC~~~~~~  107 (153)
                      .-.|.||.+.-.|.                  |.--|||+|--.|+.+|+    ....||+|...++.
T Consensus        47 ~FdCNICLd~akdP------------------VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~   96 (230)
T KOG0823|consen   47 FFDCNICLDLAKDP------------------VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI   96 (230)
T ss_pred             ceeeeeeccccCCC------------------EEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence            34799998876653                  234599999999999996    55678999988844

>KOG3268|consensus

Probab=94.82  E-value=0.024  Score=45.62  Aligned_cols=37  Identities=27%  Similarity=0.632  Sum_probs=30.1

Q ss_pred             eeeecceechHHHHHHHcC----C-------CCCCCCCCCccccccCC
Q psy16471        117 WGVCNHAFHFHCISRWLKT----R-------QVCPLDNREWEFQKYGH  153 (153)
Q Consensus       117 ~~~C~H~FH~~CI~~Wl~~----~-------~~CP~Cr~~w~~~~~~~  153 (153)
                      -..||..||.-|+..||+.    +       +.||.|..+-.++.-||
T Consensus       187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmSgk  234 (234)
T KOG3268|consen  187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMSGK  234 (234)
T ss_pred             ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeeccCC
Confidence            3679999999999999984    1       46999999977766553

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=94.76  E-value=0.029  Score=43.96  Aligned_cols=31  Identities=26%  Similarity=0.805  Sum_probs=24.9

Q ss_pred             ecc---eechHHHHHHHcCC--CCCCCCCCCccccc
Q psy16471        120 CNH---AFHFHCISRWLKTR--QVCPLDNREWEFQK  150 (153)
Q Consensus       120 C~H---~FH~~CI~~Wl~~~--~~CP~Cr~~w~~~~  150 (153)
                      |..   .-|..|+++|+..+  ..||+|+.++.+.+
T Consensus        27 CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~   62 (162)
T PHA02825         27 CKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK   62 (162)
T ss_pred             cCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence            555   45999999999874  56999999987664

>PHA02862 5L protein; Provisional

Probab=94.73  E-value=0.02  Score=44.43  Aligned_cols=30  Identities=20%  Similarity=0.641  Sum_probs=24.2

Q ss_pred             ceechHHHHHHHcCC--CCCCCCCCCcccccc
Q psy16471        122 HAFHFHCISRWLKTR--QVCPLDNREWEFQKY  151 (153)
Q Consensus       122 H~FH~~CI~~Wl~~~--~~CP~Cr~~w~~~~~  151 (153)
                      -.-|..|+.+|++..  ..||+|+.++.+++.
T Consensus        26 K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~   57 (156)
T PHA02862         26 KVVHIKCMQLWINYSKKKECNLCKTKYNIKKT   57 (156)
T ss_pred             hhHHHHHHHHHHhcCCCcCccCCCCeEEEEEc
Confidence            457999999999874  579999998776543

>KOG4185|consensus

Probab=94.65  E-value=0.028  Score=46.82  Aligned_cols=53  Identities=21%  Similarity=0.415  Sum_probs=42.3

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-CCCCCCCCCccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWEF  148 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~w~~  148 (153)
                      -+.|-+|..+|+...++.. +..+.|||.|...|+.+-+... ..||.||..+++
T Consensus         3 ~~~c~~c~~~~s~~~~~~~-p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~   56 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHI-PRVLKCGHTICQNCASKLLGNSRILCPFCRETTEI   56 (296)
T ss_pred             CCceeecCccccccCcccC-CcccccCceehHhHHHHHhcCceeeccCCCCcccC
Confidence            3568899999988854444 4566799999999999998875 469999998753

>KOG1734|consensus

Probab=94.48  E-value=0.0088  Score=50.72  Aligned_cols=56  Identities=27%  Similarity=0.383  Sum_probs=37.5

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---ccCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---IMDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---~~~~CpiC~~~~~~  107 (153)
                      +..|++|-..+..+-.+   .+..   |+  .-.=.|||+||-.||..|-   .++.||.|.+-++.
T Consensus       224 d~vCaVCg~~~~~s~~e---egvi---en--ty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl  282 (328)
T KOG1734|consen  224 DSVCAVCGQQIDVSVDE---EGVI---EN--TYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL  282 (328)
T ss_pred             cchhHhhcchheeecch---hhhh---hh--heeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence            56899998877653210   0000   10  0122599999999999994   88899999977633

>KOG2660|consensus

Probab=94.48  E-value=0.011  Score=51.08  Aligned_cols=29  Identities=28%  Similarity=0.622  Sum_probs=26.3

Q ss_pred             EeeeecceechHHHHHHHcCCCCCCCCCC
Q psy16471        116 AWGVCNHAFHFHCISRWLKTRQVCPLDNR  144 (153)
Q Consensus       116 ~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~  144 (153)
                      .+..|-|.|...||.+.|+.+..||+|..
T Consensus        30 TI~eCLHTFCkSCivk~l~~~~~CP~C~i   58 (331)
T KOG2660|consen   30 TITECLHTFCKSCIVKYLEESKYCPTCDI   58 (331)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCccce
Confidence            44679999999999999999999999974

>KOG1940|consensus

Probab=94.45  E-value=0.021  Score=48.33  Aligned_cols=48  Identities=17%  Similarity=0.277  Sum_probs=38.7

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCC
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR  144 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~  144 (153)
                      .+..||+|...+...   .-.+..++|||.-|..|+.+-...+=+||+|.+
T Consensus       157 ~~~ncPic~e~l~~s---~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  157 SEFNCPICKEYLFLS---FEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             ccCCCchhHHHhccc---cccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            344599999877333   125667899999999999999999989999987

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=94.22  E-value=0.013  Score=39.59  Aligned_cols=52  Identities=25%  Similarity=0.524  Sum_probs=20.8

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc------------ccCccccccccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH------------IMDLCIECQANQ  105 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~------------~~~~CpiC~~~~  105 (153)
                      +..|+||...+.+.        +..|...|..  -.|+..||..|+.+|.            ....||.|.+++
T Consensus         2 ~~~C~IC~~~~~~~--------~~~p~~~C~n--~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i   65 (70)
T PF11793_consen    2 ELECGICYSYRLDD--------GEIPDVVCPN--PSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI   65 (70)
T ss_dssp             --S-SSS--SS-TT-------------B--S---TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred             CCCCCcCCcEecCC--------CCcCceEcCC--cccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence            46799998875421        1112222311  2599999999999993            123599998876

>KOG0317|consensus

Probab=93.88  E-value=0.02  Score=48.65  Aligned_cols=47  Identities=19%  Similarity=0.455  Sum_probs=38.2

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST  108 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~  108 (153)
                      ...|.+|.++..++  .                .-.|||.|-.-||..|. .++.||.||..+...
T Consensus       239 ~~kC~LCLe~~~~p--S----------------aTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps  286 (293)
T KOG0317|consen  239 TRKCSLCLENRSNP--S----------------ATPCGHIFCWSCILEWCSEKAECPLCREKFQPS  286 (293)
T ss_pred             CCceEEEecCCCCC--C----------------cCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence            46799999987652  1                12599999999999996 888899999998655

>KOG1952|consensus

Probab=93.87  E-value=0.029  Score=53.65  Aligned_cols=45  Identities=27%  Similarity=0.684  Sum_probs=29.9

Q ss_pred             cccccccccCCCCccceEEeeeecceechHHHHHHHcCC-------CCCCCCCCC
Q psy16471         98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-------QVCPLDNRE  145 (153)
Q Consensus        98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-------~~CP~Cr~~  145 (153)
                      |.||...+....   -..--..|-|+||..||.+|.+..       =.||.|+..
T Consensus       194 CmIC~e~I~~t~---~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv  245 (950)
T KOG1952|consen  194 CMICTERIKRTA---PVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV  245 (950)
T ss_pred             EEEeeeeccccC---CceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence            455555543321   023336799999999999999862       259999954

>KOG1428|consensus

Probab=93.64  E-value=0.037  Score=56.15  Aligned_cols=50  Identities=28%  Similarity=0.604  Sum_probs=37.3

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC----------CCCCCCCCCcc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR----------QVCPLDNREWE  147 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~----------~~CP~Cr~~w~  147 (153)
                      ..+.|-||....-...    +-+.+.|+|.||++|..+-|+++          -+||+|..+-+
T Consensus      3485 ~DDmCmICFTE~L~AA----P~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAA----PAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             cCceEEEEehhhhCCC----cceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            5667888876653332    45678899999999999888763          36999987643

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=93.56  E-value=0.025  Score=34.51  Aligned_cols=37  Identities=32%  Similarity=0.602  Sum_probs=24.4

Q ss_pred             ccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---cc--Cccccc
Q psy16471         47 CAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---IM--DLCIEC  101 (153)
Q Consensus        47 C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---~~--~~CpiC  101 (153)
                      |+||++-|.++                  +.-.|||+|=..|+.++.   ..  ..||.|
T Consensus         1 CpiC~~~~~~P------------------v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP------------------VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE------------------EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc------------------cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            78999988763                  233699999999998884   11  357765

>KOG1785|consensus

Probab=93.29  E-value=0.031  Score=49.84  Aligned_cols=47  Identities=28%  Similarity=0.665  Sum_probs=36.5

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC--CCCCCCCCCCcc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWE  147 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~w~  147 (153)
                      .-.+|-||..+-.       -+.+-+|||.....|+..|-..  .++||.||.+-+
T Consensus       368 TFeLCKICaendK-------dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  368 TFELCKICAENDK-------DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK  416 (563)
T ss_pred             hHHHHHHhhccCC-------CcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence            3457888887642       3466789999999999999865  478999997754

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=93.19  E-value=0.1  Score=32.10  Aligned_cols=24  Identities=29%  Similarity=0.744  Sum_probs=16.1

Q ss_pred             eecceechHHHHHHHcCCC--CCCCC
Q psy16471        119 VCNHAFHFHCISRWLKTRQ--VCPLD  142 (153)
Q Consensus       119 ~C~H~FH~~CI~~Wl~~~~--~CP~C  142 (153)
                      .|+=.+|.+|+..++++++  .||.|
T Consensus        18 ~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen   18 DCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            4666799999999999876  79987

; PDB: 3NW0_A 2CT0_A.

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=93.17  E-value=0.022  Score=34.72  Aligned_cols=42  Identities=21%  Similarity=0.475  Sum_probs=31.7

Q ss_pred             ccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccc
Q psy16471         47 CAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQA  103 (153)
Q Consensus        47 C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~  103 (153)
                      |.||...+.+.-               ...-..|+|.|...|+.+.. ....||+|++
T Consensus         2 C~~C~~~~~~~~---------------~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    2 CNICFEKYSEER---------------RPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CcCcCccccCCC---------------CeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            788888872211               23456799999999998887 7778999974

>KOG1813|consensus

Probab=92.90  E-value=0.046  Score=46.73  Aligned_cols=48  Identities=15%  Similarity=0.229  Sum_probs=40.6

Q ss_pred             cccccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCC
Q psy16471         91 RNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE  145 (153)
Q Consensus        91 ~w~~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~  145 (153)
                      .|..+.-|-||+.+|..       ++...|+|.|...|-.+=++....|++|.+.
T Consensus       237 ~~~~Pf~c~icr~~f~~-------pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~  284 (313)
T KOG1813|consen  237 IELLPFKCFICRKYFYR-------PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQ  284 (313)
T ss_pred             cccCCcccccccccccc-------chhhcCCceeehhhhccccccCCcceecccc
Confidence            34566779999999844       3667899999999999999999999999875

>smart00504 Ubox Modified RING finger domain

Probab=92.84  E-value=0.045  Score=34.98  Aligned_cols=44  Identities=9%  Similarity=-0.024  Sum_probs=34.6

Q ss_pred             cccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccC
Q psy16471         46 NCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAS  107 (153)
Q Consensus        46 ~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~  107 (153)
                      .|+||+..|.+.                  +.-.|||.|-..|+.+|. ....||+|+.++..
T Consensus         3 ~Cpi~~~~~~~P------------------v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        3 LCPISLEVMKDP------------------VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             CCcCCCCcCCCC------------------EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            589999888762                  122588999999999996 56789999988743

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=92.83  E-value=0.074  Score=33.24  Aligned_cols=21  Identities=24%  Similarity=0.803  Sum_probs=16.1

Q ss_pred             ceechHHHHHHHcC--CCCCCCC
Q psy16471        122 HAFHFHCISRWLKT--RQVCPLD  142 (153)
Q Consensus       122 H~FH~~CI~~Wl~~--~~~CP~C  142 (153)
                      -.-|..||.+|++.  +.+|++|
T Consensus        25 ~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen   25 KYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             GSEECCHHHHHHHHHT-SB-TTT
T ss_pred             chhHHHHHHHHHHhcCCCcCCCC
Confidence            36899999999985  4569987

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=92.52  E-value=0.051  Score=44.44  Aligned_cols=45  Identities=24%  Similarity=0.406  Sum_probs=38.4

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCC
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE  145 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~  145 (153)
                      .+-.|.||..+|.+       ++...|||.|...|..+=++....|-+|-++
T Consensus       195 IPF~C~iCKkdy~s-------pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~  239 (259)
T COG5152         195 IPFLCGICKKDYES-------PVVTECGHSFCSLCAIRKYQKGDECGVCGKA  239 (259)
T ss_pred             Cceeehhchhhccc-------hhhhhcchhHHHHHHHHHhccCCcceecchh
Confidence            44589999999844       3667899999999999999999999999865

>TIGR00599 rad18 DNA repair protein rad18

Probab=92.46  E-value=0.037  Score=49.03  Aligned_cols=43  Identities=28%  Similarity=0.546  Sum_probs=34.0

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccc
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQ  105 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~  105 (153)
                      -.|+||+..+.+.                  +.-.|+|.|...|+.+|. ....||.|+..+
T Consensus        27 l~C~IC~d~~~~P------------------vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~   70 (397)
T TIGR00599        27 LRCHICKDFFDVP------------------VLTSCSHTFCSLCIRRCLSNQPKCPLCRAED   70 (397)
T ss_pred             cCCCcCchhhhCc------------------cCCCCCCchhHHHHHHHHhCCCCCCCCCCcc
Confidence            5799999887542                  123599999999999987 445799999876

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0825|consensus

Probab=92.10  E-value=0.019  Score=54.78  Aligned_cols=27  Identities=15%  Similarity=0.201  Sum_probs=24.6

Q ss_pred             ccccceeeeeccccc-ccCccccccccc
Q psy16471         79 VCNHAFHFHCISRNH-IMDLCIECQANQ  105 (153)
Q Consensus        79 ~C~H~fh~~c~~~w~-~~~~CpiC~~~~  105 (153)
                      .|.|-||.+|+..|. ....||+|+..|
T Consensus       143 ~c~H~FC~~Ci~sWsR~aqTCPiDR~EF  170 (1134)
T KOG0825|consen  143 HTAHYFCEECVGSWSRCAQTCPVDRGEF  170 (1134)
T ss_pred             ccccccHHHHhhhhhhhcccCchhhhhh
Confidence            599999999999997 888999999666

>KOG3039|consensus

Probab=90.73  E-value=0.29  Score=41.23  Aligned_cols=51  Identities=14%  Similarity=0.290  Sum_probs=41.8

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ..-.||+++...++..  . ..++.+|||+|-..|+++.++....||+|..+.+
T Consensus       220 ~ryiCpvtrd~LtNt~--~-ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk  270 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTT--P-CAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK  270 (303)
T ss_pred             cceecccchhhhcCcc--c-eEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence            3457999998885542  1 3467789999999999999999999999988765

>KOG2879|consensus

Probab=90.72  E-value=0.26  Score=41.90  Aligned_cols=48  Identities=23%  Similarity=0.402  Sum_probs=36.6

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC--CCCCCCCCCcc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNREWE  147 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~--~~CP~Cr~~w~  147 (153)
                      +...||+|...-.-      +-+.++|+|+|..-||..=+...  -+||.|..+-.
T Consensus       238 ~~~~C~~Cg~~Pti------P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPPTI------PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCCCC------CeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            34568888766421      55678899999999999987765  57999988755

>KOG0320|consensus

Probab=90.12  E-value=0.062  Score=42.94  Aligned_cols=46  Identities=22%  Similarity=0.521  Sum_probs=36.7

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQ  105 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~  105 (153)
                      .-.|+||...+.+.                .++.-.|||.|-.-||..-+ ....||+|+.-+
T Consensus       131 ~~~CPiCl~~~sek----------------~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkI  177 (187)
T KOG0320|consen  131 TYKCPICLDSVSEK----------------VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKI  177 (187)
T ss_pred             ccCCCceecchhhc----------------cccccccchhHHHHHHHHHHHhCCCCCCccccc
Confidence            46899999988652                22456799999999999987 677899999755

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=89.78  E-value=0.17  Score=34.16  Aligned_cols=44  Identities=27%  Similarity=0.548  Sum_probs=21.1

Q ss_pred             cccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccccC
Q psy16471         46 NCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQAS  107 (153)
Q Consensus        46 ~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~~~  107 (153)
                      .|.+|.+-|.+                 |+.-|.|.|.|-.-|+..-... .||+|..+.-.
T Consensus         9 rCs~C~~~l~~-----------------pv~l~~CeH~fCs~Ci~~~~~~-~CPvC~~Paw~   52 (65)
T PF14835_consen    9 RCSICFDILKE-----------------PVCLGGCEHIFCSSCIRDCIGS-ECPVCHTPAWI   52 (65)
T ss_dssp             S-SSS-S--SS------------------B---SSS--B-TTTGGGGTTT-B-SSS--B-S-
T ss_pred             CCcHHHHHhcC-----------------CceeccCccHHHHHHhHHhcCC-CCCCcCChHHH
Confidence            47888777654                 2335789999999999886643 49999987633

>PF04641 Rtf2: Rtf2 RING-finger

Probab=89.67  E-value=0.43  Score=39.53  Aligned_cols=51  Identities=12%  Similarity=0.156  Sum_probs=40.0

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  148 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~  148 (153)
                      ..-.||+....+...   .-.+++-+|||+|=..+|.+-- ....||+|-.+|.-
T Consensus       112 ~~~~CPvt~~~~~~~---~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~  162 (260)
T PF04641_consen  112 GRFICPVTGKEFNGK---HKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTE  162 (260)
T ss_pred             ceeECCCCCcccCCc---eeEEEEcCCCCEeeHHHHHhhc-ccccccccCCcccc
Confidence            555799999988432   2256677899999999999983 45679999999873

>KOG4159|consensus

Probab=89.39  E-value=0.22  Score=44.22  Aligned_cols=44  Identities=27%  Similarity=0.552  Sum_probs=33.2

Q ss_pred             ccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471         97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      .|-+|...+.       .++..+|||.|...||.+=+..+..||+||.+..
T Consensus        86 ~c~vc~~~l~-------~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~  129 (398)
T KOG4159|consen   86 ECCVCSRALY-------PPVVTPCGHSFCLECLDRSLDQETECPLCRDELV  129 (398)
T ss_pred             hhhhhHhhcC-------CCccccccccccHHHHHHHhccCCCCcccccccc
Confidence            4666654432       3355699999999999997777888999998753

>PHA03096 p28-like protein; Provisional

Probab=88.89  E-value=0.22  Score=42.34  Aligned_cols=49  Identities=20%  Similarity=0.448  Sum_probs=34.8

Q ss_pred             CccccccccccCCC-CccceEEeeeecceechHHHHHHHcCC---CCCCCCCC
Q psy16471         96 DLCIECQANQASTT-SEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDNR  144 (153)
Q Consensus        96 ~~CpiC~~~~~~~~-~~~c~~~~~~C~H~FH~~CI~~Wl~~~---~~CP~Cr~  144 (153)
                      ..|.||.......+ .+.---.+..|.|.|...||..|...+   .+||.||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            67999998884432 122233567899999999999999763   45666654

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=88.63  E-value=0.3  Score=34.08  Aligned_cols=32  Identities=25%  Similarity=0.677  Sum_probs=24.2

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR   91 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~   91 (153)
                      ...|++|...+...                +.+...|||.||..|+.|
T Consensus        78 ~~~C~vC~k~l~~~----------------~f~~~p~~~v~H~~C~~r  109 (109)
T PF10367_consen   78 STKCSVCGKPLGNS----------------VFVVFPCGHVVHYSCIKR  109 (109)
T ss_pred             CCCccCcCCcCCCc----------------eEEEeCCCeEEecccccC
Confidence            57799999888541                334556899999999864

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=88.62  E-value=0.38  Score=42.44  Aligned_cols=46  Identities=28%  Similarity=0.429  Sum_probs=32.5

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHH--HcCCCCCCCCCCCcc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRW--LKTRQVCPLDNREWE  147 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~W--l~~~~~CP~Cr~~w~  147 (153)
                      +.+|.||....+.       ....+|+|-....|--+-  |-....||+||.+|+
T Consensus        61 n~~C~ICA~~~TY-------s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e  108 (493)
T COG5236          61 NMNCQICAGSTTY-------SARYPCGHQICHACAVRLRALYMQKGCPLCRTETE  108 (493)
T ss_pred             cceeEEecCCceE-------EEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence            3455556555432       356899999999998664  334667999999997

>KOG2034|consensus

Probab=88.32  E-value=0.22  Score=48.04  Aligned_cols=36  Identities=25%  Similarity=0.415  Sum_probs=28.5

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK  134 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~  134 (153)
                      ....|.+|..++-..     +-..-+|||.||.+||.+-..
T Consensus       816 p~d~C~~C~~~ll~~-----pF~vf~CgH~FH~~Cl~~~v~  851 (911)
T KOG2034|consen  816 PQDSCDHCGRPLLIK-----PFYVFPCGHCFHRDCLIRHVL  851 (911)
T ss_pred             CccchHHhcchhhcC-----cceeeeccchHHHHHHHHHHH
Confidence            455688888887655     556788999999999988764

>KOG1002|consensus

Probab=87.24  E-value=0.19  Score=46.38  Aligned_cols=45  Identities=20%  Similarity=0.409  Sum_probs=33.5

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-----CCCCCCCCCC
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-----RQVCPLDNRE  145 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-----~~~CP~Cr~~  145 (153)
                      ....|.+|-.+.++       .+..+|.|.|++-||.+++..     +.+||.|-..
T Consensus       535 ~~~~C~lc~d~aed-------~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~  584 (791)
T KOG1002|consen  535 GEVECGLCHDPAED-------YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIG  584 (791)
T ss_pred             CceeecccCChhhh-------hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccc
Confidence            44457777766432       245789999999999999875     5689999754

>KOG2164|consensus

Probab=87.14  E-value=0.25  Score=44.97  Aligned_cols=46  Identities=22%  Similarity=0.327  Sum_probs=33.7

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccc------cccCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRN------HIMDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w------~~~~~CpiC~~~~~~  107 (153)
                      ...|+||.++..                  +.+-+.|||.|-..|+.+.      .....||+|+..+..
T Consensus       186 ~~~CPICL~~~~------------------~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPS------------------VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCC------------------cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            567999987753                  1223569999999999554      356789999988744

>KOG4739|consensus

Probab=86.98  E-value=0.22  Score=41.28  Aligned_cols=37  Identities=22%  Similarity=0.482  Sum_probs=28.9

Q ss_pred             eEEeeeecceechHHHHHHHcCCCCCCCCCCCccccccC
Q psy16471        114 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG  152 (153)
Q Consensus       114 ~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~~  152 (153)
                      .-.++.|+|+|...|...=  ....||+|++.-+..+++
T Consensus        17 ~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i~l~   53 (233)
T KOG4739|consen   17 PFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRIIQLN   53 (233)
T ss_pred             ceeeeechhhhhhhhcccC--Cccccccccceeeeeecc
Confidence            5578999999999997643  233899999987766654

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=86.95  E-value=0.25  Score=27.41  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=14.1

Q ss_pred             ccccccccccCCCCccceEEeeeeccee
Q psy16471         97 LCIECQANQASTTSEECTVAWGVCNHAF  124 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~F  124 (153)
                      .||.|.+.+...     ...-..|||.|
T Consensus         2 ~CP~C~~~V~~~-----~~~Cp~CG~~F   24 (26)
T PF10571_consen    2 TCPECGAEVPES-----AKFCPHCGYDF   24 (26)
T ss_pred             cCCCCcCCchhh-----cCcCCCCCCCC
Confidence            578888777444     33334567766

Several members are annotated as putative helicases.

>KOG0828|consensus

Probab=86.89  E-value=0.12  Score=47.09  Aligned_cols=58  Identities=21%  Similarity=0.462  Sum_probs=36.1

Q ss_pred             cccccccccccc--chhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccc
Q psy16471         45 DNCAICRNHIMD--LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQ  105 (153)
Q Consensus        45 d~C~IC~~~~~d--~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~  105 (153)
                      ..|+||..+++-  +-+.|...... ...+  -...-|+|.||.-|..+|.  .+-.||.||.+.
T Consensus       572 ~dC~ICMt~I~l~~~~s~~~~~~~~-~~~n--Ym~tPC~HifH~~CL~~WMd~ykl~CPvCR~pL  633 (636)
T KOG0828|consen  572 NDCVICMTPIDLRSTGSDCMVASMM-VRRN--YMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPL  633 (636)
T ss_pred             ccceEeccccceeeccCcchhhhhh-hhcc--ccccchHHHHHHHHHHHHHhhhcccCCccCCCC
Confidence            469999887652  33333221000 0000  0012499999999999996  556899999876

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=86.73  E-value=0.45  Score=30.21  Aligned_cols=47  Identities=17%  Similarity=0.317  Sum_probs=22.2

Q ss_pred             cccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCcc
Q psy16471         98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  147 (153)
Q Consensus        98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~  147 (153)
                      ||+|...+.....   ...-=+||+-+.+.|..+=++. ++.||-||++++
T Consensus         1 cp~C~e~~d~~d~---~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~   48 (48)
T PF14570_consen    1 CPLCDEELDETDK---DFYPCECGFQICRFCYHDILENEGGRCPGCREPYK   48 (48)
T ss_dssp             -TTTS-B--CCCT---T--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred             CCCcccccccCCC---ccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence            5777777733211   2222368999999999998874 789999999853

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=86.01  E-value=0.37  Score=41.51  Aligned_cols=51  Identities=20%  Similarity=0.350  Sum_probs=33.7

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccc-c-ccCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRN-H-IMDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w-~-~~~~CpiC~~~~~~  107 (153)
                      ++.|+||+.+..-. +          .-  ......|||.|-..|+.+. . ....||.|...+..
T Consensus         3 ~~~CP~Ck~~~y~n-p----------~~--kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk   55 (309)
T TIGR00570         3 DQGCPRCKTTKYRN-P----------SL--KLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCCcCCCCCccC-c----------cc--ccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence            46799998753210 0          00  1112369999999999884 3 55689999988733

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=84.77  E-value=0.6  Score=35.68  Aligned_cols=44  Identities=18%  Similarity=0.274  Sum_probs=30.1

Q ss_pred             cccc-ccCccccccccccCCCCccceEEeeeec------ceechHHHHHHHcCCC
Q psy16471         90 SRNH-IMDLCIECQANQASTTSEECTVAWGVCN------HAFHFHCISRWLKTRQ  137 (153)
Q Consensus        90 ~~w~-~~~~CpiC~~~~~~~~~~~c~~~~~~C~------H~FH~~CI~~Wl~~~~  137 (153)
                      +.|. ..-.|.||...+..+ +|  ++. ..||      |.||.+|+.+|-+.++
T Consensus        20 ~~w~~~~~EC~IC~~~I~~~-~G--vV~-vt~~g~lnLEkmfc~~C~~rw~~~~~   70 (134)
T PF05883_consen   20 DQWPRCTVECQICFDRIDNN-DG--VVY-VTDGGTLNLEKMFCADCDKRWRRERN   70 (134)
T ss_pred             HHccccCeeehhhhhhhhcC-CC--EEE-EecCCeehHHHHHHHHHHHHHHhhcc
Confidence            4565 466899999999762 22  333 3444      8899999999954443

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PF13901 DUF4206: Domain of unknown function (DUF4206)

Probab=83.41  E-value=0.62  Score=37.35  Aligned_cols=26  Identities=35%  Similarity=0.723  Sum_probs=21.1

Q ss_pred             eEEeeeecceechHHHHHHHcCCCCCCCCCC
Q psy16471        114 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNR  144 (153)
Q Consensus       114 ~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~  144 (153)
                      .+.-..|+-+||..|..+     ..||-|.+
T Consensus       172 ~~~C~~C~~v~H~~C~~~-----~~CpkC~R  197 (202)
T PF13901_consen  172 TVRCPKCKSVFHKSCFRK-----KSCPKCAR  197 (202)
T ss_pred             eeeCCcCccccchhhcCC-----CCCCCcHh
Confidence            556678999999999983     66999964

>KOG2114|consensus

Probab=83.40  E-value=0.36  Score=46.49  Aligned_cols=43  Identities=26%  Similarity=0.674  Sum_probs=34.2

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQ  105 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~  105 (153)
                      +.+|.+|...++-                 |.|-=.|+|+||.||..  .....||-|+.++
T Consensus       840 ~skCs~C~~~Ldl-----------------P~VhF~CgHsyHqhC~e--~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  840 VSKCSACEGTLDL-----------------PFVHFLCGHSYHQHCLE--DKEDKCPKCLPEL  882 (933)
T ss_pred             eeeecccCCcccc-----------------ceeeeecccHHHHHhhc--cCcccCCccchhh
Confidence            3689999888743                 44556799999999999  6677899999754

>KOG1571|consensus

Probab=82.68  E-value=0.58  Score=40.96  Aligned_cols=42  Identities=26%  Similarity=0.524  Sum_probs=30.0

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCC
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE  145 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~  145 (153)
                      .+++|.+|..+..+       .+..+|||+=.  |..-- +...+||+||+-
T Consensus       304 ~p~lcVVcl~e~~~-------~~fvpcGh~cc--ct~cs-~~l~~CPvCR~r  345 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKS-------AVFVPCGHVCC--CTLCS-KHLPQCPVCRQR  345 (355)
T ss_pred             CCCceEEecCCccc-------eeeecCCcEEE--chHHH-hhCCCCchhHHH
Confidence            78889999977533       36789999944  54433 344569999974

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=82.49  E-value=0.65  Score=30.33  Aligned_cols=36  Identities=19%  Similarity=0.324  Sum_probs=28.5

Q ss_pred             eEEeeeecceechHHHHHHHcCCCCCCCCCCCcccccc
Q psy16471        114 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY  151 (153)
Q Consensus       114 ~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~  151 (153)
                      ..+.++|||..-..|..-+  .-+-||+|.++++..+.
T Consensus        19 ~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~~   54 (55)
T PF14447_consen   19 KGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDDP   54 (55)
T ss_pred             ccccccccceeeccccChh--hccCCCCCCCcccCCCC
Confidence            4467899999999998765  33569999999887653

>KOG2817|consensus

Probab=81.48  E-value=1.4  Score=39.10  Aligned_cols=50  Identities=18%  Similarity=0.309  Sum_probs=40.5

Q ss_pred             cccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC---CCCCCCCCc
Q psy16471         93 HIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ---VCPLDNREW  146 (153)
Q Consensus        93 ~~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~---~CP~Cr~~w  146 (153)
                      ++--.|||=++..++..    ++..+.|||+.-.+=|++-.+...   .||.|=.+=
T Consensus       332 HSvF~CPVlKeqtsdeN----PPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~  384 (394)
T KOG2817|consen  332 HSVFICPVLKEQTSDEN----PPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ  384 (394)
T ss_pred             cceeecccchhhccCCC----CCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence            45678999888775544    889999999999999999887754   499997663

>KOG1428|consensus

Probab=80.87  E-value=0.45  Score=48.85  Aligned_cols=27  Identities=30%  Similarity=0.616  Sum_probs=21.4

Q ss_pred             ccccceeeeec-----ccccccC------ccccccccc
Q psy16471         79 VCNHAFHFHCI-----SRNHIMD------LCIECQANQ  105 (153)
Q Consensus        79 ~C~H~fh~~c~-----~~w~~~~------~CpiC~~~~  105 (153)
                      .|+|.||++|.     .||+.++      .||+|...+
T Consensus      3506 ~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3506 DCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred             CCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence            49999999998     6776443      499999776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	153
1u6g_B	108	Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le		9e-46
3dpl_R	106	Structural Insights Into Nedd8 Activation Of Cullin		3e-45
3dqv_R	106	Structural Insights Into Nedd8 Activation Of Cullin		2e-44
4a0k_B	117	Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp		1e-43
4a0c_D	98	Structure Of The Cand1-Cul4b-Rbx1 Complex Length =		4e-43
1ldj_B	90	Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu		1e-42
2lgv_A	100	Rbx1 Length = 100		4e-39
2ecl_A	81	Solution Structure Of The Ring Domain Of The Human		4e-10

>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 108

Iteration: 1
 Score =  178 bits (452), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 100/152 (65%), Gaps = 46/152 (30%)
Query: 2   SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
           +AM+VDT      P+ + +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 3   AAMDVDT------PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56
Query: 62  QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
           QANQAS TSEECTVAWGVCNHAFHFHCI                                
Sbjct: 57  QANQASATSEECTVAWGVCNHAFHFHCI-------------------------------- 84
Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                   SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 85  --------SRWLKTRQVCPLDNREWEFQKYGH 108

>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation. Length = 106

Iteration: 1
 Score =  177 bits (448), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/152 (61%), Positives = 99/152 (65%), Gaps = 46/152 (30%)
Query: 2   SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
            +M+VDT      P+ + +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 1   GSMDVDT------PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 54
Query: 62  QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
           QANQAS TSEECTVAWGVCNHAFHFHCI                                
Sbjct: 55  QANQASATSEECTVAWGVCNHAFHFHCI-------------------------------- 82
Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
                   SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 83  --------SRWLKTRQVCPLDNREWEFQKYGH 106

>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 106

Iteration: 1
 Score =  174 bits (440), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/143 (62%), Positives = 95/143 (66%), Gaps = 40/143 (27%)
Query: 11  NVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTS 70
           +V+ P+ + +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHI DLCIECQANQAS TS
Sbjct: 4   DVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIXDLCIECQANQASATS 63
Query: 71  EECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCIS 130
           EECTVAWGVCNHAFHFHCI                                        S
Sbjct: 64  EECTVAWGVCNHAFHFHCI----------------------------------------S 83
Query: 131 RWLKTRQVCPLDNREWEFQKYGH 153
           RWLKTRQVCPLDNREWEFQKYGH
Sbjct: 84  RWLKTRQVCPLDNREWEFQKYGH 106

>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 117

Iteration: 1
 Score =  171 bits (433), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/148 (61%), Positives = 95/148 (64%), Gaps = 43/148 (29%)
Query: 9   EENVELPTS---STTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 65
           EEN+        + +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 10  EENLYFQGGGRGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
Query: 66  ASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFH 125
           AS TSEECTVAWGVCNHAFHFHCI                                    
Sbjct: 70  ASATSEECTVAWGVCNHAFHFHCI------------------------------------ 93
Query: 126 FHCISRWLKTRQVCPLDNREWEFQKYGH 153
               SRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 94  ----SRWLKTRQVCPLDNREWEFQKYGH 117

>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 98

Iteration: 1
 Score =  170 bits (430), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 91/137 (66%), Gaps = 40/137 (29%)
Query: 17  SSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVA 76
            + +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQAS TSEECTVA
Sbjct: 2   GTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVA 61
Query: 77  WGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR 136
           WGVCNHAFHFHCI                                        SRWLKTR
Sbjct: 62  WGVCNHAFHFHCI----------------------------------------SRWLKTR 81
Query: 137 QVCPLDNREWEFQKYGH 153
           QVCPLDNREWEFQKYGH
Sbjct: 82  QVCPLDNREWEFQKYGH 98

>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 90

Iteration: 1
 Score =  168 bits (425), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/130 (67%), Positives = 89/130 (68%), Gaps = 40/130 (30%)
Query: 24  KKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA 83
           KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQAS TSEECTVAWGVCNHA
Sbjct: 1   KKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA 60
Query: 84  FHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 143
           FHFHCI                                        SRWLKTRQVCPLDN
Sbjct: 61  FHFHCI----------------------------------------SRWLKTRQVCPLDN 80
Query: 144 REWEFQKYGH 153
           REWEFQKYGH
Sbjct: 81  REWEFQKYGH 90

>pdb|2LGV|A Chain A, Rbx1 Length = 100

Iteration: 1
 Score =  156 bits (395), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/130 (64%), Positives = 85/130 (65%), Gaps = 40/130 (30%)
Query: 24  KKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA 83
           KKRF+VKK NA A  AWDIVVDNCAICRN                               
Sbjct: 11  KKRFEVKKSNASAQSAWDIVVDNCAICRN------------------------------- 39
Query: 84  FHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 143
                    HIMDLCIECQANQAS TSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN
Sbjct: 40  ---------HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 90
Query: 144 REWEFQKYGH 153
           REWEFQKYGH
Sbjct: 91  REWEFQKYGH 100

>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring-Box Protein 2 Length = 81

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 89  ISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 148
           I R  +MD C+ CQA       E+C V WG CNH+FH  C+S W+K    CPL  ++W  
Sbjct: 20  ICRVQVMDACLRCQA---ENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76
Query: 149 QKYG 152
           Q+ G
Sbjct: 77  QRIG 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	153
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	5e-30
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	1e-29
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	1e-26
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	1e-05
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	1e-05
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	4e-05
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	6e-05
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	1e-04
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	1e-04
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	1e-04
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	1e-04
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-04
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	2e-04
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	2e-04
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-04
2ect_A	78	Ring finger protein 126; metal binding protein, st	2e-04
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	4e-04

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score =  104 bits (259), Expect = 5e-30
 Identities = 93/152 (61%), Positives = 99/152 (65%), Gaps = 46/152 (30%)

Query: 2   SAMEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 61
            +M+VDT      P+ + +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 1   GSMDVDT------PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 54

Query: 62  QANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCN 121
           QANQAS TSEECTVAWGVCNHAFH                                    
Sbjct: 55  QANQASATSEECTVAWGVCNHAFH------------------------------------ 78

Query: 122 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
               FHCISRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 79  ----FHCISRWLKTRQVCPLDNREWEFQKYGH 106

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score =  103 bits (257), Expect = 1e-29
 Identities = 88/150 (58%), Positives = 94/150 (62%), Gaps = 40/150 (26%)

Query: 4   MEVDTEENVELPTSSTTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 63
           ++ +          + +   KKRF+VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA
Sbjct: 8   VDEENLYFQGGGRGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQA 67

Query: 64  NQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHA 123
           NQAS TSEECTVAWGVCNHAFH                                      
Sbjct: 68  NQASATSEECTVAWGVCNHAFH-------------------------------------- 89

Query: 124 FHFHCISRWLKTRQVCPLDNREWEFQKYGH 153
             FHCISRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 90  --FHCISRWLKTRQVCPLDNREWEFQKYGH 117

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 94.6 bits (235), Expect = 1e-26
 Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 43/121 (35%)

Query: 32  WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR 91
             +  +W+WD+  D CAICR  +MD C+ CQA                            
Sbjct: 3   SGSSGMWSWDVECDTCAICRVQVMDACLRCQAEN-------------------------- 36

Query: 92  NHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY 151
                              E+C V WG CNH+FH  C+S W+K    CPL  ++W  Q+ 
Sbjct: 37  -----------------KQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRI 79

Query: 152 G 152
           G
Sbjct: 80  G 80

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 13/22 (59%), Positives = 17/22 (77%)

Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
           C HAFH  C+ +WL+ R+VCPL
Sbjct: 36  CKHAFHRKCLIKWLEVRKVCPL 57

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
           C HAF + CI+RW++    CPL
Sbjct: 24  CLHAFCYVCITRWIRQNPTCPL 45

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 38.8 bits (91), Expect = 4e-05
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
           CNH FH  C+ +WLK  + CP+
Sbjct: 44  CNHEFHAKCVDKWLKANRTCPI 65

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 38.9 bits (91), Expect = 6e-05
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
           C+H FH  C+S WL+    CP+
Sbjct: 61  CHHYFHKPCVSIWLQKSGTCPV 82

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 120 CNHAFHFHCISRWLKTRQVCPLDNRE 145
           C H F   C+   LK    CP   ++
Sbjct: 40  CGHVFCSQCLRDSLKNANTCPTCRKK 65

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 6/75 (8%)

Query: 45  DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQAN 104
           ++C IC   +           +             C+HAFH  C+               
Sbjct: 26  EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLA------MYCNGNK 79

Query: 105 QASTTSEECTVAWGV 119
             S     C   +G 
Sbjct: 80  DGSLQCPSCKTIYGE 94

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
           C H FH  C+ +WL T + CP+
Sbjct: 35  CMHLFHQVCVDQWLITNKKCPI 56

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
           C H FH  C+  WL +   CPL
Sbjct: 27  CGHGFHAECVDMWLGSHSTCPL 48

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 120 CNHAFHFHCISRWLKTRQVCPLDNRE 145
           C H F   C+   LK    CP   ++
Sbjct: 35  CGHVFCSQCLRDSLKNANTCPTCRKK 60

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 120 CNHAFHFHCISRWLKTRQVCPLDNRE 145
           C H F   C+   LK    CP   ++
Sbjct: 28  CGHVFCSQCLRDSLKNANTCPTCRKK 53

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 9/22 (40%), Positives = 9/22 (40%)

Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
           C H  H  C    LK    CPL
Sbjct: 27  CGHLLHRTCYEEMLKEGYRCPL 48

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
           C H+F   CI +W    + CP+
Sbjct: 32  CAHSFCQKCIDKWSDRHRNCPI 53

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 120 CNHAFHFHCISRWLKTRQVCPL 141
           CNH FH  CI  WL+    CP+
Sbjct: 36  CNHLFHDSCIVPWLEQHDSCPV 57

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 36.1 bits (83), Expect = 4e-04
 Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 120 CNHAFHFHCISRWLKTRQ--VCPLDNREWEFQ 149
           C    H  C++++ ++     CP  N  W  +
Sbjct: 34  CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	153
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.97
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.96
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.9
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.7
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.49
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.44
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.43
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.41
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.4
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.4
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.39
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.39
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.35
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.35
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.33
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.32
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.3
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.2
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.2
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.18
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.14
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.13
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.13
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.12
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.1
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.1
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.09
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.09
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.08
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.07
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.05
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.04
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.02
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.99
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.99
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.99
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.97
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.96
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.95
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.94
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.91
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.9
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.88
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.88
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.85
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.8
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.79
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.75
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.74
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.69
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.68
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.66
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.65
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.59
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.53
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.52
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.51
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.51
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.5
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.49
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.49
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.47
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.45
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.4
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.39
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.39
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.37
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.37
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.35
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.35
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.33
3nw0_A	238	Non-structural maintenance of chromosomes element	98.3
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.27
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.21
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.15
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.14
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.13
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.09
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.09
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.04
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.01
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	97.99
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	97.98
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	97.94
2ea5_A	68	Cell growth regulator with ring finger domain prot	97.92
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	97.89
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.89
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	97.88
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.83
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	97.78
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	97.76
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.74
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	97.73
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	97.67
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	97.67
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	97.63
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.62
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	97.61
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	97.6
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	97.55
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	97.55
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	97.46
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	97.45
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	97.45
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	97.43
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	97.4
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	97.4
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	97.34
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	97.34
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	97.32
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	97.29
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	97.26
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	97.24
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	97.21
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	97.12
1z6u_A	150	NP95-like ring finger protein isoform B; structura	97.06
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	96.92
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	96.9
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	96.38
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	96.36
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	96.36
3nw0_A	238	Non-structural maintenance of chromosomes element	96.19
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	96.05
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	95.99
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	95.8
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	95.79
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	95.74
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.63
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	95.4
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	95.09
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	95.01
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	95.0
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	94.81
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	93.18
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	93.12
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	92.76
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	92.57
2ea5_A	68	Cell growth regulator with ring finger domain prot	92.32
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	90.95
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	90.88
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	90.36
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	89.48
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	89.21
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	88.88
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	88.74
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	88.52
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	88.22
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	87.61
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	86.55
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	85.49
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	84.64
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	83.54
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	82.49
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	82.07
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	80.99

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.97  E-value=7.5e-31  Score=190.24  Aligned_cols=95  Identities=93%  Similarity=1.675  Sum_probs=80.3

Q ss_pred             CCccccceEEEEEEEeEEeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCcc
Q psy16471         19 TTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLC   98 (153)
Q Consensus        19 ~~~~~~~~~~vk~w~~va~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~C   98 (153)
                      .....+++|+||+|++|+.|+||+.+|+|+||++.|.+.|+.|+.+....+                             
T Consensus        12 ~~~~~~~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~-----------------------------   62 (106)
T 3dpl_R           12 NSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASAT-----------------------------   62 (106)
T ss_dssp             -----CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC------------------------------
T ss_pred             ccccccCceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccC-----------------------------
Confidence            356788999999999999999999999999999999998888876543333                             


Q ss_pred             ccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccccCC
Q psy16471         99 IECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH  153 (153)
Q Consensus        99 piC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~~~  153 (153)
                                 ++++.+++++|+|.||.+||.+||+++.+||+||++|.|+++||
T Consensus        63 -----------~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~g~  106 (106)
T 3dpl_R           63 -----------SEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH  106 (106)
T ss_dssp             -------------CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEEECCC
T ss_pred             -----------CccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceeecCCC
Confidence                       34458899999999999999999999999999999999999997

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.96  E-value=6.5e-31  Score=193.95  Aligned_cols=96  Identities=92%  Similarity=1.663  Sum_probs=20.7

Q ss_pred             CCCccccceEEEEEEEeEEeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCc
Q psy16471         18 STTKGEKKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDL   97 (153)
Q Consensus        18 ~~~~~~~~~~~vk~w~~va~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~   97 (153)
                      +++...+++|+||+|++|+.|+||+.+|+|+||+++|++.|+.|+.+.+..+++                          
T Consensus        22 ~~~~~~~~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~--------------------------   75 (117)
T 4a0k_B           22 TNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSE--------------------------   75 (117)
T ss_dssp             ------CCSEEEEEEEEEEEEEECCCC-----------------------------------------------------
T ss_pred             CCCCCcCCceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhccccccccc--------------------------
Confidence            345567899999999999999999999999999999999999988764444444                          


Q ss_pred             cccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccccCC
Q psy16471         98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH  153 (153)
Q Consensus        98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~~~  153 (153)
                                    +|.+++++|+|.||.+||.+||+++.+||+||++|+++++||
T Consensus        76 --------------~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~k~g~  117 (117)
T 4a0k_B           76 --------------ECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH  117 (117)
T ss_dssp             --------------------------------------------------------
T ss_pred             --------------ccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeeeccCC
Confidence                          448888999999999999999999999999999999999997

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=5e-25  Score=151.28  Aligned_cols=80  Identities=44%  Similarity=1.125  Sum_probs=68.8

Q ss_pred             EEEeEEeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccccCCCC
Q psy16471         31 KWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTTS  110 (153)
Q Consensus        31 ~w~~va~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~~~~~~  110 (153)
                      +|++|+.|+||..+++|+||+++|.+.|+.|..                                        ++.   +
T Consensus         2 ~~~~~~~w~~~~~~~~C~IC~~~~~~~C~iC~~----------------------------------------~~~---~   38 (81)
T 2ecl_A            2 SSGSSGMWSWDVECDTCAICRVQVMDACLRCQA----------------------------------------ENK---Q   38 (81)
T ss_dssp             CCCCCCCCCCSCCCSCBTTTTBCTTSCCTTHHH----------------------------------------HTC---T
T ss_pred             CcceeEEeeecCCCCCCcccChhhhccCccccc----------------------------------------ccC---C
Confidence            589999999999999999999999876665544                                        332   2


Q ss_pred             ccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccccCC
Q psy16471        111 EECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH  153 (153)
Q Consensus       111 ~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~~~  153 (153)
                      +++.++++.|+|.||.+||.+||+++++||+||++|.++++||
T Consensus        39 ~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~g~   81 (81)
T 2ecl_A           39 EDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK   81 (81)
T ss_dssp             TTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEEEEC
T ss_pred             CceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhhcCC
Confidence            3447777889999999999999999999999999999999986

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.70  E-value=6.4e-18  Score=122.25  Aligned_cols=97  Identities=19%  Similarity=0.473  Sum_probs=72.4

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCCC---------Ccc
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQASTT---------SEE  112 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~~---------~~~  112 (153)
                      ....|+||++.+.+.-..           .-..+.-.|||.||..|+.+|. ....||+|+..+....         ...
T Consensus         6 ~~~~C~IC~~~~~~~~~~-----------~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~   74 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQN-----------GRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVS   74 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHT-----------TCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCB
T ss_pred             CCCCCcccChhhhCcccc-----------ccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCCCCC
Confidence            346899999998753000           0012345799999999999997 6779999998874321         111


Q ss_pred             c---------------eEEeeeecceechHHHHHHHcCCCCCCCCCCCccccc
Q psy16471        113 C---------------TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK  150 (153)
Q Consensus       113 c---------------~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~  150 (153)
                      |               .++.++|||+||..||.+|++.+.+||+||++.....
T Consensus        75 C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~  127 (133)
T 4ap4_A           75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR  127 (133)
T ss_dssp             CTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence            1               2367789999999999999999999999999976544

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.49  E-value=2.2e-14  Score=102.54  Aligned_cols=36  Identities=22%  Similarity=0.425  Sum_probs=31.3

Q ss_pred             eEEeeeecceechHHHHHHH-----cCCCCCCCCCCCcccc
Q psy16471        114 TVAWGVCNHAFHFHCISRWL-----KTRQVCPLDNREWEFQ  149 (153)
Q Consensus       114 ~~~~~~C~H~FH~~CI~~Wl-----~~~~~CP~Cr~~w~~~  149 (153)
                      .+.+++|+|.||.+||.+||     +.+.+||+||+.|...
T Consensus        55 ~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           55 VGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             ceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            56688999999999999999     4567899999998754

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.44  E-value=5.2e-14  Score=88.28  Aligned_cols=50  Identities=26%  Similarity=0.502  Sum_probs=40.4

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ...|+||+..+..+.   ..+.+..|||.||..||.+|++.+.+||+||++..
T Consensus         5 ~~~C~IC~~~~~~~~---~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            5 GVECAVCLAELEDGE---EARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCCCCTTS---CCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCcCccCCccccCCC---ceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            457999999986543   13333459999999999999999999999999864

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.43  E-value=1.1e-13  Score=90.64  Aligned_cols=53  Identities=28%  Similarity=0.532  Sum_probs=44.6

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK  150 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~  150 (153)
                      ....|+||+..+..+.    .++.++|||.||..||.+|++.+.+||+||+++..+.
T Consensus        13 ~~~~C~IC~~~~~~~~----~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           13 TEEKCTICLSILEEGE----DVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             CCCSBTTTTBCCCSSS----CEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCCeeCCccccCCC----cEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            3457999999885543    5677889999999999999999999999999987543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=1.1e-13  Score=94.32  Aligned_cols=51  Identities=20%  Similarity=0.677  Sum_probs=43.1

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC--CCCCCCCCCccccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNREWEFQK  150 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~--~~CP~Cr~~w~~~~  150 (153)
                      ....|+||+..+..  +..|.    .|+|.||.+||.+||+++  .+||+||++|.++.
T Consensus        14 ~i~~C~IC~~~i~~--g~~C~----~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~   66 (74)
T 2ct0_A           14 AVKICNICHSLLIQ--GQSCE----TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI   66 (74)
T ss_dssp             SSCBCSSSCCBCSS--SEECS----SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred             CCCcCcchhhHccc--CCccC----CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence            34679999999964  34454    899999999999999998  89999999998753

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=1.2e-13  Score=92.03  Aligned_cols=51  Identities=29%  Similarity=0.681  Sum_probs=43.4

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  148 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~  148 (153)
                      ....|+||+..+....    .++.++|+|.||..||.+|++.+.+||+||++...
T Consensus        22 ~~~~C~IC~~~~~~~~----~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           22 EQTLCVVCMCDFESRQ----LLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SCCEETTTTEECCBTC----EEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCeECCcccCCCC----eEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            3457999999986543    66778899999999999999999999999998653

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.40  E-value=1.7e-13  Score=91.72  Aligned_cols=54  Identities=30%  Similarity=0.503  Sum_probs=45.4

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY  151 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~  151 (153)
                      ....|+||+..+....    .++.++|+|.||..||.+|++.+.+||+||+++..+..
T Consensus        14 ~~~~C~IC~~~~~~~~----~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (78)
T 2ect_A           14 SGLECPVCKEDYALGE----SVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT   67 (78)
T ss_dssp             SSCCCTTTTSCCCTTS----CEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred             CCCCCeeCCccccCCC----CEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence            4567999999986543    55667899999999999999999999999999876554

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.39  E-value=2e-13  Score=94.73  Aligned_cols=49  Identities=24%  Similarity=0.500  Sum_probs=42.3

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ...|+||+..+..+.    .++.++|||.||..||.+|++.+.+||+||+++.
T Consensus        40 ~~~C~IC~~~~~~~~----~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~   88 (91)
T 2l0b_A           40 EMCCPICCSEYVKGD----VATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP   88 (91)
T ss_dssp             CSEETTTTEECCTTC----EEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred             CCCCcccChhhcCCC----cEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence            346899999986653    5677889999999999999999999999999864

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=2.3e-13  Score=90.23  Aligned_cols=50  Identities=34%  Similarity=0.762  Sum_probs=42.4

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ....|+||+..+....    .+..++|+|.||..||.+|++.+.+||+||+++.
T Consensus        14 ~~~~C~IC~~~~~~~~----~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~   63 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRD----ELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL   63 (74)
T ss_dssp             CSCBCSSSCCBCCSSS----CEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred             CCCCCcCCCcccCCCC----cEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence            4567999999986543    4556789999999999999999999999999864

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.35  E-value=2.1e-13  Score=89.37  Aligned_cols=58  Identities=19%  Similarity=0.401  Sum_probs=46.0

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY  151 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~  151 (153)
                      ....|+||+..+.....+...++.++|||.||..||.+|++.+.+||+||+++....+
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   66 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred             CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence            3457999999884421112366788999999999999999999999999999876544

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.35  E-value=5.5e-13  Score=83.39  Aligned_cols=49  Identities=22%  Similarity=0.370  Sum_probs=41.3

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW  146 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w  146 (153)
                      ...|+||+..+...   +-.++.++|||.||..||.+|++.+.+||+||++.
T Consensus         5 ~~~C~IC~~~~~~~---~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~   53 (55)
T 2ecm_A            5 SSGCPICLEDIHTS---RVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS   53 (55)
T ss_dssp             CCSCTTTCCCCCTT---TSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred             CCcCcccChhhcCC---CcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence            45799999998442   12567789999999999999999999999999874

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=4.3e-13  Score=87.08  Aligned_cols=54  Identities=19%  Similarity=0.357  Sum_probs=43.4

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ....|+||+..+.........++.++|||.||..||.+|++.+.+||+||+++.
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            456799999988543212235678899999999999999999999999999864

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.32  E-value=3e-13  Score=86.63  Aligned_cols=56  Identities=20%  Similarity=0.425  Sum_probs=44.0

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK  150 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~  150 (153)
                      ...|+||+..+.......-.++.++|||.||..||.+|++.+.+||+||+++..+.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   58 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   58 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence            34699999988442111125677899999999999999999999999999977544

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.30  E-value=1.1e-12  Score=85.48  Aligned_cols=45  Identities=31%  Similarity=0.674  Sum_probs=35.9

Q ss_pred             ccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471         97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      .|+||+..+..      .++.++|||.||..||.+|++.+.+||+||++..
T Consensus         7 ~C~IC~~~~~~------~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   51 (68)
T 1chc_A            7 RCPICLEDPSN------YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCSSCCSCCCS------CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCeeCCccccC------CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence            45555555432      3467789999999999999999999999998865

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=5.3e-12  Score=83.30  Aligned_cols=50  Identities=18%  Similarity=0.284  Sum_probs=41.2

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK  150 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~  150 (153)
                      ....|+||+..+..      + +.++|||.||..||.+|++.+.+||+||++.....
T Consensus        14 ~~~~C~IC~~~~~~------~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   63 (71)
T 2d8t_A           14 TVPECAICLQTCVH------P-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDF   63 (71)
T ss_dssp             SCCBCSSSSSBCSS------E-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred             CCCCCccCCcccCC------C-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence            34579999988733      2 45689999999999999999999999999876443

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=8.8e-12  Score=82.44  Aligned_cols=51  Identities=24%  Similarity=0.349  Sum_probs=42.2

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK  150 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~  150 (153)
                      ....|+||+..+..      ++.+.+|||.||..||.+|++.+.+||+||++.....
T Consensus        14 ~~~~C~IC~~~~~~------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   64 (72)
T 2djb_A           14 PYILCSICKGYLID------ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ   64 (72)
T ss_dssp             GGGSCTTTSSCCSS------CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred             CCCCCCCCChHHHC------cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence            45579999988754      4455699999999999999999999999999876543

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=7.5e-12  Score=85.91  Aligned_cols=52  Identities=23%  Similarity=0.640  Sum_probs=41.9

Q ss_pred             ccCccccccccccCCCCccceEEeeeec-----ceechHHHHHHHcCC--CCCCCCCCCccccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWEFQK  150 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~w~~~~  150 (153)
                      ....|+||+.++..+.    .+ .++|+     |.||..||++||+.+  .+||+||.++.++.
T Consensus        14 ~~~~C~IC~~~~~~~~----~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           14 SQDICRICHCEGDDES----PL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             TSCCCSSSCCCCCSSS----CE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCeEcCccccCCC----ee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            3567999999885432    33 47896     999999999999986  48999999998754

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=3e-11  Score=81.83  Aligned_cols=53  Identities=15%  Similarity=0.312  Sum_probs=42.8

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC---CCCCCCCCCcccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDNREWEFQ  149 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~---~~CP~Cr~~w~~~  149 (153)
                      ....|+||...+...   +..++.++|||.||..||.+|++.+   .+||+||++....
T Consensus        14 ~~~~C~IC~~~~~~~---~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           14 EVLECPICMESFTEE---QLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             SCCBCTTTCCBCCTT---SSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             CCCCCccCCcccccc---CCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            345799999998553   1235677999999999999999986   7899999987654

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.13  E-value=1.1e-11  Score=91.00  Aligned_cols=80  Identities=33%  Similarity=0.545  Sum_probs=16.0

Q ss_pred             CCCCCccccceEEEEEEEeE-----EeeeecccCcccccccccccc-chhhhhcCCCCCCccccceeccccccceeeeec
Q psy16471         16 TSSTTKGEKKRFDVKKWNAV-----ALWAWDIVVDNCAICRNHIMD-LCIECQANQASTTSEECTVAWGVCNHAFHFHCI   89 (153)
Q Consensus        16 ~~~~~~~~~~~~~vk~w~~v-----a~w~wd~~~d~C~IC~~~~~d-~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~   89 (153)
                      +..++++++++.+|+.|+|.     +++|.+..++.|.+|+.+... +..+|..            +++.|+|.||.+||
T Consensus        26 ~~~~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v------------~~~~C~H~FH~~CI   93 (117)
T 4a0k_B           26 AGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV------------AWGVCNHAFHFHCI   93 (117)
T ss_dssp             --CCSEEEEEEEEEEEEEECCCC---------------------------------------------------------
T ss_pred             CcCCceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhccccccccccccc------------ccCCcCceEcHHHH
Confidence            34567899999999999995     899999999999999886322 1122322            36789999999999


Q ss_pred             cccc-ccCccccccccccC
Q psy16471         90 SRNH-IMDLCIECQANQAS  107 (153)
Q Consensus        90 ~~w~-~~~~CpiC~~~~~~  107 (153)
                      .+|+ .+..||+|+++|..
T Consensus        94 ~~Wl~~~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           94 SRWLKTRQVCPLDNREWEF  112 (117)
T ss_dssp             -------------------
T ss_pred             HHHHHcCCcCCCCCCeeee
Confidence            9998 77899999999743

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=3.5e-11  Score=79.10  Aligned_cols=51  Identities=20%  Similarity=0.272  Sum_probs=41.2

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHc---CCCCCCCCCCCcccccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLDNREWEFQKY  151 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~---~~~~CP~Cr~~w~~~~~  151 (153)
                      ....||||+..+..      + +.++|||.||..||.+|++   .+.+||+||++......
T Consensus        19 ~~~~C~IC~~~~~~------~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           19 EEVICPICLDILQK------P-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCBCTTTCSBCSS------E-EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             cCCEeccCCcccCC------e-EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            45679999998753      3 4459999999999999997   35689999999876654

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=1.1e-11  Score=81.19  Aligned_cols=47  Identities=23%  Similarity=0.517  Sum_probs=40.2

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  148 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~  148 (153)
                      ....|+||+..+..        +.++|||.||..||.+|++.+.+||+||++...
T Consensus        14 ~~~~C~IC~~~~~~--------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (70)
T 2ecn_A           14 DEEECCICMDGRAD--------LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG   60 (70)
T ss_dssp             CCCCCSSSCCSCCS--------EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred             CCCCCeeCCcCccC--------cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence            45679999988732        567899999999999999999999999988653

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.10  E-value=1.7e-11  Score=88.17  Aligned_cols=55  Identities=18%  Similarity=0.387  Sum_probs=43.5

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ  149 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~  149 (153)
                      ...|+||+..+.....+.-.++.++|||+||..||.+|++.+.+||+||+.....
T Consensus         7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (133)
T 4ap4_A            7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK   61 (133)
T ss_dssp             SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred             CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence            4579999998843211112567889999999999999999999999999987644

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=4.6e-11  Score=77.60  Aligned_cols=50  Identities=20%  Similarity=0.309  Sum_probs=39.9

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHc-CCCCCCCCCCCccccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWEFQK  150 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~w~~~~  150 (153)
                      ....||||+..+...       +.++|||.||..||.+|++ .+.+||+||++....+
T Consensus        14 ~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   64 (66)
T 2ecy_A           14 DKYKCEKCHLVLCSP-------KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK   64 (66)
T ss_dssp             CCEECTTTCCEESSC-------CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred             cCCCCCCCChHhcCe-------eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence            345799999887542       3369999999999999995 5678999999976544

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.09  E-value=5.5e-11  Score=83.68  Aligned_cols=51  Identities=22%  Similarity=0.509  Sum_probs=42.0

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-CCCCCCCCCccccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWEFQK  150 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~w~~~~  150 (153)
                      ....|+||+..+..      ++..+.|||.||..||.+|++.+ .+||+||++.....
T Consensus        21 ~~~~C~IC~~~~~~------p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (100)
T 3lrq_A           21 EVFRCFICMEKLRD------ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE   72 (100)
T ss_dssp             HHTBCTTTCSBCSS------EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCccCCccccC------ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence            44579999998843      44448999999999999999988 68999999976543

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.09  E-value=5e-11  Score=88.27  Aligned_cols=46  Identities=26%  Similarity=0.581  Sum_probs=39.4

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  148 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~  148 (153)
                      -.||||...+..       ++.++|||.||..||.+|++.+.+||+||++...
T Consensus        54 ~~C~iC~~~~~~-------~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           54 LQCIICSEYFIE-------AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             SBCTTTCSBCSS-------EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             CCCcccCcccCC-------ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            359999988843       3567899999999999999999999999998753

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.08  E-value=1.8e-11  Score=88.14  Aligned_cols=92  Identities=35%  Similarity=0.563  Sum_probs=63.4

Q ss_pred             CCCCCcccCCCCCCCCCCccccceEEEEEEEeE-----EeeeecccCcccccccccccc-chhhhhcCCCCCCcccccee
Q psy16471          3 AMEVDTEENVELPTSSTTKGEKKRFDVKKWNAV-----ALWAWDIVVDNCAICRNHIMD-LCIECQANQASTTSEECTVA   76 (153)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vk~w~~v-----a~w~wd~~~d~C~IC~~~~~d-~c~~C~~~~~~~~~~~c~~~   76 (153)
                      +|+++++.++...+...+++++++.+|+.|+|.     +++|.+..++.|.+|+.++.. ...+            |+++
T Consensus         2 ~~~~~~~~~~~~~~~~~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~------------~~~~   69 (106)
T 3dpl_R            2 SMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEE------------CTVA   69 (106)
T ss_dssp             ---------------CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---C------------CCEE
T ss_pred             CcccCCCcccccccccCceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCcc------------ceEe
Confidence            356666555555556778999999999999996     789999999999999875432 1112            2456


Q ss_pred             ccccccceeeeeccccc-ccCcccccccccc
Q psy16471         77 WGVCNHAFHFHCISRNH-IMDLCIECQANQA  106 (153)
Q Consensus        77 ~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~  106 (153)
                      .+.|+|.||.+||.+|+ .+..||+|++.+.
T Consensus        70 ~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           70 WGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             EETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             ecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            77899999999999997 7789999999973

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.07  E-value=9.5e-11  Score=81.73  Aligned_cols=48  Identities=19%  Similarity=0.324  Sum_probs=40.6

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  148 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~  148 (153)
                      ...|+||...+..      ++...+|||.||..||.+|++.+.+||+||+....
T Consensus        22 ~~~C~IC~~~~~~------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           22 LLRCGICFEYFNI------AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HTBCTTTCSBCSS------EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCcccCChhhCC------cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            4579999988843      44455899999999999999999999999998764

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.05  E-value=1.2e-10  Score=77.52  Aligned_cols=47  Identities=21%  Similarity=0.357  Sum_probs=38.1

Q ss_pred             ccCccccccccccCCCCccceEEeee-ecceechHHHHHHHcCC--CCCCCCCCCcc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGV-CNHAFHFHCISRWLKTR--QVCPLDNREWE  147 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~-C~H~FH~~CI~~Wl~~~--~~CP~Cr~~w~  147 (153)
                      ....||||+..+..      ++ .++ |||.||..||.+|++.+  .+||+||++..
T Consensus        14 ~~~~C~IC~~~~~~------p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           14 DELLCLICKDIMTD------AV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             GGGSCSSSCCCCTT------CE-ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCCCCcCCChHHhC------Ce-EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            34579999988854      33 356 99999999999999876  68999999754

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=9e-11  Score=79.06  Aligned_cols=46  Identities=15%  Similarity=0.301  Sum_probs=39.1

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ...|+||+..+..      + +.++|||.||..||.+|++...+||+||++..
T Consensus        15 ~~~C~IC~~~~~~------p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           15 PFRCFICRQAFQN------P-VVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CSBCSSSCSBCCS------E-EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCcCCCchhcC------e-eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            4579999988843      2 45799999999999999999999999999853

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.02  E-value=1.7e-10  Score=76.89  Aligned_cols=48  Identities=13%  Similarity=0.244  Sum_probs=39.4

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCcccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQ  149 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~~~  149 (153)
                      .-.||||+..+..      + +.++|||+|+..||.+|++. +.+||+||++....
T Consensus         8 ~~~C~IC~~~~~~------P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            8 YFRCPISLELMKD------P-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSCTTTSCCCSS------E-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             cCCCCCccccccC------C-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            4579999988743      3 44689999999999999997 77899999986543

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.99  E-value=2.4e-10  Score=76.44  Aligned_cols=49  Identities=22%  Similarity=0.406  Sum_probs=40.4

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC------CCCCCCCCCCcccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNREWEFQ  149 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~------~~~CP~Cr~~w~~~  149 (153)
                      ....|+||+..+...       +.++|||.||..||.+|++.      ...||+||++....
T Consensus        18 ~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           18 EEVTCPICLELLKEP-------VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             TTTSCTTTCSCCSSC-------EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             cCCCCcCCChhhCcc-------eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            455799999887442       35789999999999999998      67899999987644

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.99  E-value=2.8e-10  Score=80.59  Aligned_cols=49  Identities=24%  Similarity=0.480  Sum_probs=40.9

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  148 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~  148 (153)
                      ....||||...+..      ++...+|||.||..||.+|++.+.+||+||+....
T Consensus        14 ~~~~C~IC~~~~~~------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           14 PHLMCVLCGGYFID------ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             GGTBCTTTSSBCSS------EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             CcCCCccCChHHhC------cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence            45579999988843      44555999999999999999999999999998653

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.99  E-value=2.6e-10  Score=73.75  Aligned_cols=36  Identities=17%  Similarity=0.336  Sum_probs=29.4

Q ss_pred             EEeeeecceechHHHHHHHcC-CCCCCCCCCCccccc
Q psy16471        115 VAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQK  150 (153)
Q Consensus       115 ~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~~~~  150 (153)
                      ++.++|||+||..||.+|+.. +.+||+||++.....
T Consensus        21 ~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   57 (65)
T 1g25_A           21 LMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             EEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             eecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence            356789999999999999765 467999999876443

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=3.2e-10  Score=75.81  Aligned_cols=50  Identities=18%  Similarity=0.307  Sum_probs=40.9

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC------CCCCCCCCCCccccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNREWEFQK  150 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~------~~~CP~Cr~~w~~~~  150 (153)
                      ....|+||...+..-       +.++|||.||..||.+|++.      ...||+||+......
T Consensus        18 ~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecv_A           18 EEVTCPICLELLTQP-------LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN   73 (85)
T ss_dssp             CCCCCTTTCSCCSSC-------BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred             CCCCCCCCCcccCCc-------eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence            456799999988442       44689999999999999987      778999999877543

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=3.3e-11  Score=81.97  Aligned_cols=66  Identities=30%  Similarity=0.578  Sum_probs=54.1

Q ss_pred             EEEEEEEeE-----EeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccc
Q psy16471         27 FDVKKWNAV-----ALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIE  100 (153)
Q Consensus        27 ~~vk~w~~v-----a~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~Cpi  100 (153)
                      .+|..|+|.     +.++.+...+.|+||++++.+              ++.+.+...|+|.||..|+.+|+ ....||+
T Consensus         4 ~~~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~--------------~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~   69 (81)
T 2ecl_A            4 GSSGMWSWDVECDTCAICRVQVMDACLRCQAENKQ--------------EDCVVVWGECNHSFHNCCMSLWVKQNNRCPL   69 (81)
T ss_dssp             CCCCCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCT--------------TTCCEEEETTSCEEEHHHHHHHTTTCCBCTT
T ss_pred             ceeEEeeecCCCCCCcccChhhhccCcccccccCC--------------CceEEEeCCCCCccChHHHHHHHHhCCCCCC
Confidence            345667764     789999999999999998764              23355667899999999999997 6779999


Q ss_pred             cccccc
Q psy16471        101 CQANQA  106 (153)
Q Consensus       101 C~~~~~  106 (153)
                      |++++.
T Consensus        70 CR~~~~   75 (81)
T 2ecl_A           70 CQQDWV   75 (81)
T ss_dssp             TCCBCC
T ss_pred             cCCCcc
Confidence            999984

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.95  E-value=1.3e-10  Score=77.36  Aligned_cols=49  Identities=20%  Similarity=0.341  Sum_probs=39.8

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-------CCCCCCCCCCcccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-------RQVCPLDNREWEFQ  149 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-------~~~CP~Cr~~w~~~  149 (153)
                      ....||||+..+..-       +.++|||.||..||.+|++.       ...||+||++....
T Consensus        11 ~~~~C~IC~~~~~~p-------~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A           11 EEVTCPICLELLTEP-------LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCCEETTTTEECSSC-------CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred             cCCCCcCCCcccCCe-------eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence            345799999988442       34689999999999999987       56899999987654

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=5.9e-10  Score=71.51  Aligned_cols=42  Identities=24%  Similarity=0.370  Sum_probs=34.3

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHc---CCCCCCCC
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLD  142 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~---~~~~CP~C  142 (153)
                      ....||||+..+..      + +.++|||.||..||.+|++   .+.+||+|
T Consensus        19 ~~~~C~IC~~~~~~------p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           19 EEVICPICLDILQK------P-VTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCBCTTTCSBCSS------C-EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             cCCCCCcCCchhCC------e-EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            45679999988853      2 4459999999999999998   45689998

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.91  E-value=7.3e-10  Score=83.88  Aligned_cols=47  Identities=23%  Similarity=0.422  Sum_probs=39.3

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCcc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  147 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~  147 (153)
                      ...||||+..+..      ++...+|||.||..||.+|++. +..||+||.+..
T Consensus        54 ~~~C~IC~~~~~~------p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           54 ELMCPICLDMLKN------TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV  101 (165)
T ss_dssp             HHBCTTTSSBCSS------EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCCcccChHhhC------cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence            3479999988853      5555699999999999999998 778999999863

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=7e-10  Score=69.59  Aligned_cols=42  Identities=26%  Similarity=0.585  Sum_probs=34.1

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHc---CCCCCCCC
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLD  142 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~---~~~~CP~C  142 (153)
                      ....|+||+..+...       +.++|||.||..||.+|++   .+.+||+|
T Consensus        14 ~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYLKEP-------VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBCSSC-------CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcccCcc-------EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            456799999988542       4478999999999999954   56789998

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.88  E-value=8.8e-10  Score=79.80  Aligned_cols=47  Identities=23%  Similarity=0.402  Sum_probs=38.5

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC-CCCCCCCCccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWEF  148 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~w~~  148 (153)
                      .-.||||...+..      + +.++|||.||..||.+|++.+. +||+||++...
T Consensus        52 ~~~C~IC~~~~~~------p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           52 TFQCICCQELVFR------P-ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HTBCTTTSSBCSS------E-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCCCcCChHHcC------c-EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            4569999988853      3 4569999999999999998655 89999998753

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.88  E-value=9.5e-10  Score=77.58  Aligned_cols=48  Identities=21%  Similarity=0.441  Sum_probs=38.8

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC---CCCCCCCCcccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ---VCPLDNREWEFQ  149 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~---~CP~Cr~~w~~~  149 (153)
                      ...||||...+...       +.++|||.||..||.+|++.+.   +||+||++....
T Consensus        21 ~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           21 ILECPICLELIKEP-------VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (112)
T ss_dssp             HTSCSSSCCCCSSC-------CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CCCCcccChhhcCe-------EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence            44799999887432       3468999999999999999764   899999987643

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.85  E-value=1.4e-09  Score=77.72  Aligned_cols=50  Identities=26%  Similarity=0.305  Sum_probs=40.6

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCccccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQK  150 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~~~~  150 (153)
                      ....||||+..+..      + +.++|||.||..||.+|++. +.+||+||++.....
T Consensus        22 ~~~~C~IC~~~~~~------p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (116)
T 1rmd_A           22 KSISCQICEHILAD------P-VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (116)
T ss_dssp             HHTBCTTTCSBCSS------E-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCcHhcC------c-EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence            34579999988743      3 44799999999999999997 678999999876543

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.80  E-value=2.4e-09  Score=73.38  Aligned_cols=45  Identities=20%  Similarity=0.391  Sum_probs=36.8

Q ss_pred             cCccccccccccCCCCccceEEeee-ecceechHHHHHHHcCC--CCCCCCCCCc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGV-CNHAFHFHCISRWLKTR--QVCPLDNREW  146 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~-C~H~FH~~CI~~Wl~~~--~~CP~Cr~~w  146 (153)
                      .-.||||...+..      + +.++ |||.|+..||.+|++.+  ..||+||++.
T Consensus        13 ~~~C~IC~~~~~~------p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A           13 ELLCLICKDIMTD------A-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             TTEETTTTEECSS------C-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             CCCCCCCChhhcC------c-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            4579999988853      3 3456 99999999999999754  5899999986

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.79  E-value=2e-09  Score=77.45  Aligned_cols=49  Identities=22%  Similarity=0.369  Sum_probs=40.0

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC-CCCCCCCCcccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWEFQ  149 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~w~~~  149 (153)
                      ..-.||||...+..      + +.++|||.|+..||.+|++.+. +||+||++....
T Consensus        17 ~~~~C~IC~~~~~~------p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           17 SKYECPICLMALRE------A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             GGGBCTTTCSBCSS------E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCcCChhhcC------e-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            45579999988743      3 4468999999999999999865 899999987653

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.75  E-value=4.3e-09  Score=79.38  Aligned_cols=49  Identities=20%  Similarity=0.366  Sum_probs=39.9

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC-CCCCCCCCcccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWEFQ  149 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~w~~~  149 (153)
                      ....|+||+..+..      + +.++|||.||..||.+|++.+. +||+||.+....
T Consensus        77 ~~~~C~IC~~~~~~------p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQ------P-VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSS------E-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcC------C-EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            34579999988743      2 4479999999999999999865 799999987643

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.74  E-value=2.3e-09  Score=76.55  Aligned_cols=46  Identities=20%  Similarity=0.319  Sum_probs=37.8

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCcc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  147 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~  147 (153)
                      .-.|+||...+..      + +.++|||.||..||.+|++. +.+||+||+...
T Consensus        15 ~~~C~iC~~~~~~------p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           15 ECQCGICMEILVE------P-VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             HHBCTTTCSBCSS------C-EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCCCccCCcccCc------e-eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            3469999988743      2 44589999999999999987 568999999865

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.69  E-value=1.5e-08  Score=66.02  Aligned_cols=49  Identities=20%  Similarity=0.514  Sum_probs=38.7

Q ss_pred             ccCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCcc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ....|+||.....+.     ....++|||. |...|+.+|.+.+..||+||++..
T Consensus         7 ~~~~C~IC~~~~~~~-----~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNG-----CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCE-----EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCE-----EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            355799999876332     2223499999 789999999999999999999864

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=5.2e-09  Score=71.00  Aligned_cols=51  Identities=20%  Similarity=0.601  Sum_probs=40.4

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-cc--CccccccccccCCCC
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IM--DLCIECQANQASTTS  110 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~--~~CpiC~~~~~~~~~  110 (153)
                      ..+.|+||++.++.             ...|.    .|+|.||++|+.+|. ..  ..||+|+.++....+
T Consensus        14 ~i~~C~IC~~~i~~-------------g~~C~----~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~   67 (74)
T 2ct0_A           14 AVKICNICHSLLIQ-------------GQSCE----TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP   67 (74)
T ss_dssp             SSCBCSSSCCBCSS-------------SEECS----SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred             CCCcCcchhhHccc-------------CCccC----CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence            35899999999862             23443    799999999999997 33  789999999966543

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.66  E-value=1.9e-08  Score=65.28  Aligned_cols=49  Identities=24%  Similarity=0.565  Sum_probs=39.4

Q ss_pred             ccCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCcc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ....|+||.....+.     .++.++|||. |...|+.+|.+.+..||+||++.+
T Consensus         6 ~~~~C~IC~~~~~~~-----~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDG-----NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCE-----EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCe-----EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            356799999875332     4445699998 999999999998899999999854

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.65  E-value=4.9e-09  Score=75.30  Aligned_cols=48  Identities=25%  Similarity=0.450  Sum_probs=38.4

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ  149 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~  149 (153)
                      ..-.||||+..+..      ++.+.+|||.|+..||.+|++  ..||+||+.....
T Consensus        21 ~~~~C~IC~~~~~~------pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (117)
T 1jm7_B           21 KLLRCSRCTNILRE------PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (117)
T ss_dssp             HTTSCSSSCSCCSS------CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             hCCCCCCCChHhhC------ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence            34579999988843      333348999999999999998  7899999987543

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.59  E-value=1.3e-08  Score=69.12  Aligned_cols=51  Identities=14%  Similarity=0.189  Sum_probs=37.3

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF  148 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~~  148 (153)
                      ...||||..+++..+   -.+...+|||.|+..||.++++. +..||+||+....
T Consensus        11 ~~~CpICle~~~~~d---~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~   62 (78)
T 1e4u_A           11 PVECPLCMEPLEIDD---INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   62 (78)
T ss_dssp             CCBCTTTCCBCCTTT---TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred             CCcCCccCccCcccc---ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence            357999999884331   01112359999999999998854 5689999998654

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.53  E-value=6.3e-08  Score=66.35  Aligned_cols=48  Identities=8%  Similarity=-0.120  Sum_probs=40.0

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ  149 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~  149 (153)
                      .-.||||+..+..      + +.++|||+|.+.||.+|++.+.+||+||.+....
T Consensus        14 ~~~CpI~~~~m~d------P-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           14 EFRDPLMDTLMTD------P-VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES   61 (85)
T ss_dssp             TTBCTTTCSBCSS------E-EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             heECcccCchhcC------C-eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence            4579999988844      3 5566999999999999999889999999886543

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.52  E-value=1.5e-08  Score=75.69  Aligned_cols=46  Identities=20%  Similarity=0.364  Sum_probs=37.6

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC-CCCCCCCCc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREW  146 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~w  146 (153)
                      ..-.||||+..+..      + +.+.|||.|+..||.+|++... +||+||.+-
T Consensus        30 ~~~~C~IC~~~~~~------p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           30 AKYLCSACRNVLRR------P-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             GGGBCTTTCSBCSS------E-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             cCcCCCCCChhhcC------c-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence            34579999988743      3 5579999999999999998765 899999864

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.51  E-value=1.7e-08  Score=63.83  Aligned_cols=48  Identities=21%  Similarity=0.432  Sum_probs=37.8

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccccC
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG  152 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~~  152 (153)
                      .-.|+||+..+..       ++.++|||.|+..||.+|   ...||+||++..+...|
T Consensus         6 ~~~C~IC~~~~~~-------p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~~   53 (56)
T 1bor_A            6 FLRCQQCQAEAKC-------PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGADT   53 (56)
T ss_dssp             CSSCSSSCSSCBC-------CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSSC
T ss_pred             CCCceEeCCccCC-------eEEcCCCCcccHHHHccC---CCCCCcCCcEeecCCcC
Confidence            3469999988743       256789999999999884   67899999998765443

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.51  E-value=3.3e-08  Score=64.13  Aligned_cols=26  Identities=23%  Similarity=0.603  Sum_probs=23.3

Q ss_pred             eechHHHHHHHcC--CCCCCCCCCCccc
Q psy16471        123 AFHFHCISRWLKT--RQVCPLDNREWEF  148 (153)
Q Consensus       123 ~FH~~CI~~Wl~~--~~~CP~Cr~~w~~  148 (153)
                      .||..||.+|+..  +.+||+|+.++.+
T Consensus        32 ~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A           32 NVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             SCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             hhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            8999999999986  5789999999875

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=1.8e-08  Score=66.69  Aligned_cols=51  Identities=22%  Similarity=0.455  Sum_probs=39.0

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST  108 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~  108 (153)
                      ..+.|+||++.+.+..               .++.-.|+|.||..|+.+|. .+..||+|++.+...
T Consensus        22 ~~~~C~IC~~~~~~~~---------------~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A           22 EQTLCVVCMCDFESRQ---------------LLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             SCCEETTTTEECCBTC---------------EEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             CCCCCeECCcccCCCC---------------eEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            4578999999886421               11223499999999999997 677999999988553

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.49  E-value=5.8e-08  Score=83.84  Aligned_cols=46  Identities=28%  Similarity=0.594  Sum_probs=39.2

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHc-CCCCCCCCCCCccc
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWEF  148 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~w~~  148 (153)
                      ..|+||...+.       .++.++|||.||..||.+|++ ...+||+||++...
T Consensus       333 ~~C~ICle~~~-------~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          333 QLCKICAENDK-------DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SBCTTTSSSBC-------CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCccCcCCC-------CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            58999998873       346789999999999999999 67889999998654

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.49  E-value=1e-07  Score=67.44  Aligned_cols=47  Identities=9%  Similarity=-0.117  Sum_probs=39.4

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  148 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~  148 (153)
                      .-.||||+..+.+      + +.++|||+|.+.||.+|+..+.+||+||.+...
T Consensus        29 ~~~CpI~~~~m~d------P-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           29 EFRDPLMDTLMTD------P-VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             TTBCTTTCSBCSS------E-EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             hhCCcCccCcccC------C-eECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence            4579999988744      3 455699999999999999988999999988654

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.47  E-value=9e-08  Score=67.48  Aligned_cols=48  Identities=13%  Similarity=-0.010  Sum_probs=40.2

Q ss_pred             cCccccccccccCCCCccceEEeeeec-ceechHHHHHHHcCCCCCCCCCCCcccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCN-HAFHFHCISRWLKTRQVCPLDNREWEFQ  149 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~-H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~  149 (153)
                      .-.||||+..+.+      + +.++|| |+|.+.||.+|++.+.+||+||.+....
T Consensus        22 ~~~CpI~~~~m~d------P-V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           22 EFLDPIMSTLMCD------P-VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             TTBCTTTCSBCSS------E-EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             hcCCcCccccccC------C-eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence            4579999988844      3 557899 9999999999999989999999986543

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.45  E-value=6.6e-08  Score=59.96  Aligned_cols=48  Identities=23%  Similarity=0.408  Sum_probs=36.9

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQ  105 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~  105 (153)
                      .+.|+||.+.+.+..              -+.....|+|.||..|+.+|. .+..||+|+..+
T Consensus         5 ~~~C~IC~~~~~~~~--------------~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~   53 (55)
T 1iym_A            5 GVECAVCLAELEDGE--------------EARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             SCCCTTTCCCCCTTS--------------CCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCcCccCCccccCCC--------------ceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence            478999999886421              112223599999999999997 778899999876

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.40  E-value=1.1e-07  Score=71.96  Aligned_cols=48  Identities=23%  Similarity=0.371  Sum_probs=39.2

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC-CCCCCCCCccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWEF  148 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~w~~  148 (153)
                      ..-.||||...+..      + +.++|||.|+..||.+|++.++ +||+||.+...
T Consensus        17 ~~~~C~IC~~~~~~------p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           17 SKYECPICLMALRE------A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             GGGBCTTTCSBCSS------E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCChhhcC------c-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence            44579999988743      3 4478999999999999998754 89999998654

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.39  E-value=8.2e-08  Score=63.93  Aligned_cols=43  Identities=19%  Similarity=0.397  Sum_probs=35.4

Q ss_pred             ccCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCcc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ....|+||...+..       ++.++|||. |+..|+.+|    ..||+||++..
T Consensus        23 ~~~~C~iC~~~~~~-------~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~   66 (74)
T 4ic3_A           23 EEKLCKICMDRNIA-------IVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT   66 (74)
T ss_dssp             HHTBCTTTSSSBCC-------EEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred             cCCCCCCCCCCCCC-------EEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence            34679999987632       356799999 999999999    78999999864

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.39  E-value=7.2e-08  Score=62.53  Aligned_cols=50  Identities=22%  Similarity=0.446  Sum_probs=38.2

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST  108 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~  108 (153)
                      .+.|+||+..+.+..               .++.-.|+|.||..|+.+|. ....||+|+..+...
T Consensus        14 ~~~C~IC~~~~~~~~---------------~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           14 EEKCTICLSILEEGE---------------DVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ   64 (69)
T ss_dssp             CCSBTTTTBCCCSSS---------------CEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred             CCCCeeCCccccCCC---------------cEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence            578999999885311               11223599999999999997 677899999998554

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.37  E-value=1e-07  Score=58.94  Aligned_cols=50  Identities=20%  Similarity=0.289  Sum_probs=38.3

Q ss_pred             ccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccc
Q psy16471         42 IVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQ  105 (153)
Q Consensus        42 ~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~  105 (153)
                      ...+.|+||++.+.+..             . .++...|+|.||..|+.+|. ....||+|+..+
T Consensus         3 ~~~~~C~IC~~~~~~~~-------------~-~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~   53 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSR-------------V-VAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS   53 (55)
T ss_dssp             SCCCSCTTTCCCCCTTT-------------S-CEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred             CCCCcCcccChhhcCCC-------------c-CeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence            34678999999885411             0 22344699999999999997 568999999886

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=1.9e-07  Score=64.95  Aligned_cols=45  Identities=22%  Similarity=0.383  Sum_probs=36.1

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC------CCCCC--CCCC
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR------QVCPL--DNRE  145 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~------~~CP~--Cr~~  145 (153)
                      .-.||||+..+..      +++...|||+|.+.||.+|++.+      .+||+  |+..
T Consensus         7 ~~~CPI~~~~~~d------PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            7 GFTCPITKEEMKK------PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             CCBCTTTCSBCSS------EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             EeECcCcCchhcC------CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            4579999988843      44444699999999999999864      48999  9865

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.35  E-value=7.3e-08  Score=63.31  Aligned_cols=50  Identities=22%  Similarity=0.489  Sum_probs=38.2

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccC
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAS  107 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~  107 (153)
                      ..+.|+||++.+.+.-.               .+.-.|+|.||..|+.+|. ....||+|+..+..
T Consensus        14 ~~~~C~IC~~~~~~~~~---------------~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRDE---------------LGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ   64 (74)
T ss_dssp             CSCBCSSSCCBCCSSSC---------------EEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred             CCCCCcCCCcccCCCCc---------------EEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence            45789999999864211               1112499999999999997 66799999998844

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.35  E-value=7.3e-08  Score=82.47  Aligned_cols=30  Identities=27%  Similarity=0.640  Sum_probs=25.9

Q ss_pred             eeecceechHHHHHHHcCC-----------CCCCCCCCCcc
Q psy16471        118 GVCNHAFHFHCISRWLKTR-----------QVCPLDNREWE  147 (153)
Q Consensus       118 ~~C~H~FH~~CI~~Wl~~~-----------~~CP~Cr~~w~  147 (153)
                      .+|+|.||..||.+||++.           ++||+||++..
T Consensus       332 ~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          332 AKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             TTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             CccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            5799999999999999863           56999998754

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.33  E-value=1.4e-07  Score=62.51  Aligned_cols=51  Identities=25%  Similarity=0.402  Sum_probs=38.6

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST  108 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~  108 (153)
                      ....|+||++.|.+.-               ..+.-.|+|.||..|+.+|. ....||+|+..+...
T Consensus        14 ~~~~C~IC~~~~~~~~---------------~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (78)
T 2ect_A           14 SGLECPVCKEDYALGE---------------SVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ   65 (78)
T ss_dssp             SSCCCTTTTSCCCTTS---------------CEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred             CCCCCeeCCccccCCC---------------CEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence            3578999999886421               11122499999999999997 667999999988543

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=98.30  E-value=4.5e-07  Score=73.35  Aligned_cols=52  Identities=19%  Similarity=0.629  Sum_probs=42.5

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC--CCCCCCCCccccccC
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ--VCPLDNREWEFQKYG  152 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~--~CP~Cr~~w~~~~~~  152 (153)
                      -..|.+|...+..+  -.|    ..|+|.||.+|+.+|+++++  .||.|+.+|..+...
T Consensus       180 i~~C~iC~~iv~~g--~~C----~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~  233 (238)
T 3nw0_A          180 VKICNICHSLLIQG--QSC----ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK  233 (238)
T ss_dssp             CCBCTTTCSBCSSC--EEC----SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred             CCcCcchhhHHhCC--ccc----CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence            56799999988754  223    34999999999999999865  899999999987653

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.27  E-value=1.2e-07  Score=65.21  Aligned_cols=49  Identities=22%  Similarity=0.365  Sum_probs=37.5

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccccccccc
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQA  106 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~  106 (153)
                      ....|+||++.+.+.             +  .++.-.|+|.||..|+.+|. .+..||+|+..+.
T Consensus        39 ~~~~C~IC~~~~~~~-------------~--~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~   88 (91)
T 2l0b_A           39 QEMCCPICCSEYVKG-------------D--VATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP   88 (91)
T ss_dssp             SCSEETTTTEECCTT-------------C--EEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred             CCCCCcccChhhcCC-------------C--cEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence            456899999888542             1  11223499999999999997 7779999998873

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.21  E-value=8.2e-07  Score=70.65  Aligned_cols=47  Identities=6%  Similarity=-0.103  Sum_probs=38.0

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC-CCCCCCCCccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWEF  148 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~w~~  148 (153)
                      .-.||||...+..      + +.++|||+|.+.||.+|++.++ +||+||.+...
T Consensus       208 ~~~c~i~~~~~~d------P-v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          208 YLCGKISFELMRE------P-CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             TTBCTTTCSBCSS------E-EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             ccCCcCcCCHhcC------C-eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            3469999988843      3 4567999999999999998754 59999998654

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.15  E-value=3.8e-07  Score=58.51  Aligned_cols=53  Identities=17%  Similarity=0.431  Sum_probs=39.3

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccccccccc
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQA  106 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~  106 (153)
                      ....|+||++.+.+....           .-.++...|+|.||..|+.+|. ....||+|+..+.
T Consensus        14 ~~~~C~IC~~~~~~~~~~-----------~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           14 GTVSCPICMDGYSEIVQN-----------GRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             CCCCCTTTCCCHHHHTTT-----------TCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCcccCccccccccc-----------cCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            357899999998753110           0012345699999999999997 6779999998874

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.14  E-value=3.9e-07  Score=59.00  Aligned_cols=55  Identities=16%  Similarity=0.415  Sum_probs=40.7

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST  108 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~  108 (153)
                      ....|+||++.+.+.-..           .-..+...|+|.||..|+.+|. ....||+|+..+...
T Consensus         9 ~~~~C~IC~~~~~~~~~~-----------~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQN-----------GRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK   64 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTT-----------TCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred             CCCCCcccChhhhccccc-----------cCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence            457899999998753100           0122345799999999999997 677999999998543

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.13  E-value=9.3e-07  Score=58.69  Aligned_cols=42  Identities=19%  Similarity=0.432  Sum_probs=33.3

Q ss_pred             cCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCcc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ...|+||+..+..       ++.++|||. |+..|+.+    ...||+||++..
T Consensus        25 ~~~C~IC~~~~~~-------~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~   67 (75)
T 2ecg_A           25 EKLCKICMDRNIA-------IVFVPCGHLVTCKQCAEA----VDKCPMCYTVIT   67 (75)
T ss_dssp             HHSCSSSCSSCCC-------BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCC
T ss_pred             CCCCCcCCCCCCC-------EEEecCCCHHHHHHHhhC----CCCCccCCceec
Confidence            4579999987633       356799999 99999964    378999999854

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.09  E-value=5.5e-07  Score=56.91  Aligned_cols=54  Identities=17%  Similarity=0.453  Sum_probs=40.3

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST  108 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~  108 (153)
                      ...|+||++.+.+....          + -..+...|+|.||..|+.+|. ....||+|+..+...
T Consensus         3 ~~~C~IC~~~~~~~~~~----------~-~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQN----------G-RLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK   57 (64)
T ss_dssp             CCBCTTTCCBHHHHHHT----------T-CCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred             CCCCCccChhhhCcccc----------C-CCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence            46899999998753210          0 012345699999999999997 677999999998654

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.09  E-value=1.2e-06  Score=57.30  Aligned_cols=46  Identities=24%  Similarity=0.569  Sum_probs=36.9

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccccccccc
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQA  106 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~  106 (153)
                      ....|+||++.+.+.                  +.-.|+|.||..|+.+|. ....||+|+..+.
T Consensus        14 ~~~~C~IC~~~~~~~------------------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (71)
T 2d8t_A           14 TVPECAICLQTCVHP------------------VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP   60 (71)
T ss_dssp             SCCBCSSSSSBCSSE------------------EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred             CCCCCccCCcccCCC------------------EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence            357899999888642                  122599999999999997 6679999999874

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.04  E-value=1.1e-06  Score=59.97  Aligned_cols=49  Identities=22%  Similarity=0.342  Sum_probs=36.4

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccc-----cceeeeeccccc---ccCccccccccccC
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCN-----HAFHFHCISRNH---IMDLCIECQANQAS  107 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~-----H~fh~~c~~~w~---~~~~CpiC~~~~~~  107 (153)
                      .++.|.||++++.+...               + ...|+     |.||..|+.+|+   ....||+|+..+..
T Consensus        14 ~~~~C~IC~~~~~~~~~---------------l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           14 SQDICRICHCEGDDESP---------------L-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TSCCCSSSCCCCCSSSC---------------E-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCeEcCccccCCCe---------------e-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            45889999988753211               1 23475     999999999997   23589999999844

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.01  E-value=3.5e-06  Score=54.54  Aligned_cols=48  Identities=15%  Similarity=0.177  Sum_probs=39.5

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccc
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ  149 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~  149 (153)
                      -.|||+.+.+.+      +++..++||+|-+.||.+||+.+++||+.+.+....
T Consensus         4 ~~CpIs~~~m~d------PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~   51 (61)
T 2bay_A            4 MLCAISGKVPRR------PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   51 (61)
T ss_dssp             CCCTTTCSCCSS------EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             EEecCCCCCCCC------CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence            468999988853      444448999999999999999988999999886544

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.99  E-value=1.4e-06  Score=57.03  Aligned_cols=48  Identities=27%  Similarity=0.562  Sum_probs=38.3

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST  108 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~  108 (153)
                      ...|+||++.+.+.                 +....|+|.|+..|+.+|. ....||+|+..+...
T Consensus        15 ~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           15 YILCSICKGYLIDA-----------------TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT   63 (72)
T ss_dssp             GGSCTTTSSCCSSC-----------------EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred             CCCCCCCChHHHCc-----------------CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence            46899999988651                 1223699999999999997 677999999998554

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.98  E-value=1e-06  Score=57.17  Aligned_cols=46  Identities=24%  Similarity=0.507  Sum_probs=37.7

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST  108 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~  108 (153)
                      ...|+||++.+.+                   +.-.|+|.||..|+.+|. ....||+|+..+...
T Consensus        15 ~~~C~IC~~~~~~-------------------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (70)
T 2ecn_A           15 EEECCICMDGRAD-------------------LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA   61 (70)
T ss_dssp             CCCCSSSCCSCCS-------------------EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred             CCCCeeCCcCccC-------------------cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence            5789999988754                   123599999999999997 688999999988543

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=97.94  E-value=6.6e-06  Score=64.09  Aligned_cols=49  Identities=6%  Similarity=-0.113  Sum_probs=39.1

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-CCCCCCCCCcccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWEFQ  149 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~w~~~  149 (153)
                      ..-.||||...+..      + +.++|||+|-+.||.+|+..+ .+||+|+.+....
T Consensus       105 ~~f~CPI~~elm~D------P-V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~  154 (179)
T 2f42_A          105 DYLCGKISFELMRE------P-CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD  154 (179)
T ss_dssp             GGGBCTTTCSBCSS------E-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             HhhcccCccccCCC------C-eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence            34579999988853      3 555899999999999999875 4699999886543

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.92  E-value=5.5e-06  Score=54.43  Aligned_cols=43  Identities=21%  Similarity=0.391  Sum_probs=34.6

Q ss_pred             ccCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCcc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ....|+||+....       .+++++|||. |...|+.+    ...||+||++..
T Consensus        14 ~~~~C~IC~~~~~-------~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~   57 (68)
T 2ea5_A           14 NSKDCVVCQNGTV-------NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ   57 (68)
T ss_dssp             CSSCCSSSSSSCC-------CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred             CCCCCCCcCcCCC-------CEEEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence            3567999987753       3477899999 99999994    478999999864

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.89  E-value=4.6e-06  Score=54.20  Aligned_cols=47  Identities=23%  Similarity=0.454  Sum_probs=37.0

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc----ccCccccccccccCC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH----IMDLCIECQANQAST  108 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~----~~~~CpiC~~~~~~~  108 (153)
                      ...|+||++.+.+.                 ++ -.|+|.|+..|+.+|.    ....||+|+..+...
T Consensus        20 ~~~C~IC~~~~~~~-----------------~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           20 EVICPICLDILQKP-----------------VT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCBCTTTCSBCSSE-----------------EE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             CCEeccCCcccCCe-----------------EE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            46899999988642                 11 2699999999999997    355899999998543

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.89  E-value=6.3e-06  Score=56.68  Aligned_cols=47  Identities=15%  Similarity=0.363  Sum_probs=36.1

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC--------CCCCC--CCCC
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPL--DNRE  145 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~--------~~CP~--Cr~~  145 (153)
                      .-.|+||...+....    .+.+..|||.|...||.++++.+        ..||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~~----~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQ----MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGG----EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCccccccc----ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            346999998875431    34445799999999999999751        36999  9987

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=97.88  E-value=3.6e-06  Score=56.81  Aligned_cols=43  Identities=23%  Similarity=0.515  Sum_probs=34.4

Q ss_pred             ccCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCcc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ....|+||.....       .++.++|||. |...|+.+|    ..||+||++..
T Consensus        17 ~~~~C~IC~~~~~-------~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~   60 (79)
T 2yho_A           17 EAMLCMVCCEEEI-------NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVE   60 (79)
T ss_dssp             HHTBCTTTSSSBC-------CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred             CCCEeEEeCcccC-------cEEEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence            3457999987652       3467899999 999999987    38999999754

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.83  E-value=7.4e-06  Score=67.54  Aligned_cols=49  Identities=20%  Similarity=0.280  Sum_probs=39.8

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC--CCCCC--CCCCccc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPL--DNREWEF  148 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~--~~CP~--Cr~~w~~  148 (153)
                      ..-.||||+..+..      ++....|||+|.+.||.+|++.+  .+||+  ||+....
T Consensus       180 ~el~CPIcl~~f~D------PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          180 IELTCPITCKPYEA------PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             CCSBCTTTSSBCSS------EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             eeeECcCccCcccC------CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            45679999999844      55556999999999999999875  36999  9987554

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=97.78  E-value=4.3e-06  Score=55.11  Aligned_cols=45  Identities=24%  Similarity=0.577  Sum_probs=35.4

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc---cCccccccccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI---MDLCIECQANQ  105 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~---~~~CpiC~~~~  105 (153)
                      ...|+||++.+.+.                 +....|+|.|+..|+.+|..   ...||+|+..+
T Consensus        15 ~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   62 (74)
T 2yur_A           15 ELLCLICKDIMTDA-----------------VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   62 (74)
T ss_dssp             GGSCSSSCCCCTTC-----------------EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred             CCCCcCCChHHhCC-----------------eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence            46899999988652                 22234999999999999973   25899999975

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=97.76  E-value=7.3e-06  Score=60.19  Aligned_cols=45  Identities=24%  Similarity=0.429  Sum_probs=36.6

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccC
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAS  107 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~  107 (153)
                      ..|+||.+.+.+.                  +.-.|||.||..|+.+|. ....||+|+.++..
T Consensus        54 ~~C~iC~~~~~~~------------------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           54 LQCIICSEYFIEA------------------VTLNCAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             SBCTTTCSBCSSE------------------EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             CCCcccCcccCCc------------------eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            3699999988652                  123599999999999997 77889999998844

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.74  E-value=2.5e-05  Score=55.80  Aligned_cols=44  Identities=20%  Similarity=0.383  Sum_probs=34.7

Q ss_pred             cccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCcc
Q psy16471         98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  147 (153)
Q Consensus        98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~  147 (153)
                      |+.|.-++..      -....+|+|+|..+|+..|.+. .++||+|+.+..
T Consensus         4 C~~C~~Pi~i------ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~   48 (101)
T 3vk6_A            4 CDKCGLPIKV------YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ   48 (101)
T ss_dssp             CTTTCSBCSE------EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred             cCccCCCeEE------EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence            6667766632      3467889999999999999855 688999998854

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=97.73  E-value=7.3e-06  Score=56.61  Aligned_cols=47  Identities=19%  Similarity=0.392  Sum_probs=37.4

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~  107 (153)
                      ...|+||.+.+.+.                 +....|+|.||..|+.+|. ....||+|+..+..
T Consensus        22 ~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           22 LLRCGICFEYFNIA-----------------MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HTBCTTTCSBCSSE-----------------EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCcccCChhhCCc-----------------CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            36899999988652                 1123599999999999997 66799999998854

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=97.67  E-value=1e-05  Score=56.37  Aligned_cols=47  Identities=28%  Similarity=0.468  Sum_probs=36.9

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-cc-CccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IM-DLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~-~~CpiC~~~~~~  107 (153)
                      ...|+||++.+.+.                 +..-.|+|.|+..|+.+|. .. ..||+|+..+..
T Consensus        22 ~~~C~IC~~~~~~p-----------------~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           22 VFRCFICMEKLRDA-----------------RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HTBCTTTCSBCSSE-----------------EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCccCCccccCc-----------------cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            46799999998652                 1114699999999999997 33 689999999843

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.67  E-value=1.4e-05  Score=53.42  Aligned_cols=51  Identities=20%  Similarity=0.322  Sum_probs=37.7

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc----cCccccccccccCC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI----MDLCIECQANQAST  108 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~----~~~CpiC~~~~~~~  108 (153)
                      ...|+||.+.+.+.             +. ..+.-.|+|.||..|+.+|..    ...||+|+..+...
T Consensus        15 ~~~C~IC~~~~~~~-------------~~-~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           15 VLECPICMESFTEE-------------QL-RPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CCBCTTTCCBCCTT-------------SS-CEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             CCCCccCCcccccc-------------CC-CeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            46799999988652             11 112336999999999999973    37899999987543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.63  E-value=1.4e-05  Score=53.15  Aligned_cols=45  Identities=22%  Similarity=0.451  Sum_probs=36.7

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccccccccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQA  106 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~  106 (153)
                      ...|+||+..+.+.                  +.-.|+|.||..|+.+|. ....||+|+..+.
T Consensus        15 ~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           15 PFRCFICRQAFQNP------------------VVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CSBCSSSCSBCCSE------------------EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCcCCCchhcCe------------------eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            35799999988652                  123699999999999997 6778999999974

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.62  E-value=1.3e-05  Score=68.06  Aligned_cols=43  Identities=19%  Similarity=0.422  Sum_probs=35.7

Q ss_pred             ccCccccccccccCCCCccceEEeeeecce-echHHHHHHHcCCCCCCCCCCCcc
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ....|+||...+.       .++.++|||. |+..|+.+|    ..||+||++..
T Consensus       294 ~~~~C~IC~~~~~-------~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~  337 (345)
T 3t6p_A          294 EERTCKVCMDKEV-------SVVFIPCGHLVVCQECAPSL----RKCPICRGIIK  337 (345)
T ss_dssp             TTCBCTTTSSSBC-------CEEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred             CCCCCCccCCcCC-------ceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence            4567999998873       3466799999 999999998    67999999864

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.61  E-value=1.1e-05  Score=51.65  Aligned_cols=47  Identities=19%  Similarity=0.381  Sum_probs=37.0

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAST  108 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~  108 (153)
                      ...|+||++.+.+.                  +.-.|+|.|+..|+.+|.  .+..||+|+..+...
T Consensus        15 ~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           15 KYKCEKCHLVLCSP------------------KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CEECTTTCCEESSC------------------CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CCCCCCCChHhcCe------------------eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            36799999888652                  112699999999999997  567899999988543

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=97.60  E-value=1.9e-05  Score=55.37  Aligned_cols=48  Identities=25%  Similarity=0.460  Sum_probs=38.2

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST  108 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~  108 (153)
                      ...|+||+..+.+.                 +....|+|.|+..|+.+|. ....||+|+..+...
T Consensus        15 ~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           15 HLMCVLCGGYFIDA-----------------TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GTBCTTTSSBCSSE-----------------EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             cCCCccCChHHhCc-----------------CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            46899999988652                 1223699999999999997 568999999998543

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.55  E-value=1.8e-05  Score=50.19  Aligned_cols=40  Identities=28%  Similarity=0.521  Sum_probs=31.2

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc----ccCccccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH----IMDLCIEC  101 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~----~~~~CpiC  101 (153)
                      ...|+||++.+.+.                 ++ -.|+|.|+..|+.+|.    ....||+|
T Consensus        20 ~~~C~IC~~~~~~p-----------------~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           20 EVICPICLDILQKP-----------------VT-IDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCBCTTTCSBCSSC-----------------EE-CTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CCCCCcCCchhCCe-----------------EE-eCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            46899999988652                 11 2699999999999997    34579987

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=97.55  E-value=1.9e-05  Score=51.80  Aligned_cols=46  Identities=20%  Similarity=0.379  Sum_probs=36.1

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc--------cCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI--------MDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~--------~~~CpiC~~~~~~  107 (153)
                      ...|+||++.+.+.-                  .-.|+|.|+..|+.+|..        ...||+|+..+..
T Consensus        12 ~~~C~IC~~~~~~p~------------------~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           12 EVTCPICLELLTEPL------------------SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCEETTTTEECSSCC------------------CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             CCCCcCCCcccCCee------------------ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            467999999886521                  125999999999999973        5689999998844

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.46  E-value=2.3e-05  Score=48.49  Aligned_cols=40  Identities=25%  Similarity=0.492  Sum_probs=31.2

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc----ccCccccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH----IMDLCIEC  101 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~----~~~~CpiC  101 (153)
                      ...|+||++.+.+.                  +.-.|+|.||..|+.+|.    .+..||+|
T Consensus        15 ~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           15 EASCSVCLEYLKEP------------------VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCBCSSSCCBCSSC------------------CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             CCCCccCCcccCcc------------------EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            47899999988652                  112599999999999993    45679887

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=97.45  E-value=2.9e-05  Score=58.28  Aligned_cols=46  Identities=24%  Similarity=0.441  Sum_probs=36.6

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccC
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAS  107 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~  107 (153)
                      ..|+||+..+.+.                 +..-.|+|.||..|+.+|.  ....||+|+..+..
T Consensus        55 ~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           55 LMCPICLDMLKNT-----------------MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HBCTTTSSBCSSE-----------------EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCcccChHhhCc-----------------CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            5899999988752                 1123699999999999997  37789999998843

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.45  E-value=3.1e-05  Score=51.09  Aligned_cols=46  Identities=28%  Similarity=0.499  Sum_probs=36.5

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-c------cCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-I------MDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~------~~~CpiC~~~~~~  107 (153)
                      ...|+||+..+.+.                 + .-.|+|.|+..|+.+|. .      ...||+|+..+..
T Consensus        19 ~~~C~IC~~~~~~p-----------------~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           19 EVTCPICLELLKEP-----------------V-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             TTSCTTTCSCCSSC-----------------E-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             CCCCcCCChhhCcc-----------------e-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            46899999988652                 1 22599999999999996 3      6789999999854

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=97.43  E-value=4.4e-05  Score=50.21  Aligned_cols=67  Identities=13%  Similarity=0.125  Sum_probs=45.9

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCCCCccceEEeeeec
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQASTTSEECTVAWGVCN  121 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~~~~~c~~~~~~C~  121 (153)
                      .-.|+||++.|.+.-                  .-.|+|.|+..|+.+|.  ....||+|+..+....    .+.    +
T Consensus         8 ~~~C~IC~~~~~~Pv------------------~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~----l~~----n   61 (78)
T 1t1h_A            8 YFRCPISLELMKDPV------------------IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG----LTP----N   61 (78)
T ss_dssp             SSSCTTTSCCCSSEE------------------EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC----CEE----C
T ss_pred             cCCCCCccccccCCE------------------EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh----Ccc----C
Confidence            457999999887531                  12599999999999997  3678999999985431    110    2


Q ss_pred             ceechHHHHHHHcCCC
Q psy16471        122 HAFHFHCISRWLKTRQ  137 (153)
Q Consensus       122 H~FH~~CI~~Wl~~~~  137 (153)
                      +. -..=|++|++.++
T Consensus        62 ~~-l~~~i~~~~~~~~   76 (78)
T 1t1h_A           62 YV-LKSLIALWCESNG   76 (78)
T ss_dssp             TT-THHHHHHHHHHSC
T ss_pred             HH-HHHHHHHHHHHcC
Confidence            22 2445677766543

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=97.40  E-value=4.2e-05  Score=54.85  Aligned_cols=46  Identities=20%  Similarity=0.477  Sum_probs=36.5

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~  107 (153)
                      ...|+||...+.+.                  +.-.|+|.|+..|+.+|.  ....||+|+..+..
T Consensus        52 ~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           52 TFQCICCQELVFRP------------------ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HTBCTTTSSBCSSE------------------EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCCCcCChHHcCc------------------EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            35799999988652                  112699999999999997  44589999999854

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.40  E-value=5.5e-05  Score=53.88  Aligned_cols=46  Identities=26%  Similarity=0.475  Sum_probs=36.9

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~~~  107 (153)
                      .-.|+||++.+.+.                 +....|+|.|+..|+.+|.. ..||+|+..+..
T Consensus        22 ~~~C~IC~~~~~~p-----------------v~~~~CgH~fC~~Ci~~~~~-~~CP~Cr~~~~~   67 (117)
T 1jm7_B           22 LLRCSRCTNILREP-----------------VCLGGCEHIFCSNCVSDCIG-TGCPVCYTPAWI   67 (117)
T ss_dssp             TTSCSSSCSCCSSC-----------------BCCCSSSCCBCTTTGGGGTT-TBCSSSCCBCSC
T ss_pred             CCCCCCCChHhhCc-----------------cEeCCCCCHHHHHHHHHHhc-CCCcCCCCcCcc
Confidence            46899999988652                 12226999999999999987 889999998843

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.34  E-value=5.3e-05  Score=49.92  Aligned_cols=46  Identities=24%  Similarity=0.491  Sum_probs=36.4

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-c------cCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-I------MDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~------~~~CpiC~~~~~~  107 (153)
                      ...|+||+..+.+.-                  .-.|+|.|+..|+.+|. .      ...||+|+..+..
T Consensus        19 ~~~C~IC~~~~~~p~------------------~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           19 EVTCPICLELLTQPL------------------SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCTTTCSCCSSCB------------------CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             CCCCCCCCcccCCce------------------eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            468999999886521                  12599999999999996 3      6789999998854

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=97.34  E-value=6.3e-05  Score=53.13  Aligned_cols=45  Identities=22%  Similarity=0.426  Sum_probs=35.8

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCcccccccccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQA  106 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~  106 (153)
                      +..|+||...+.+.                 + .-.|+|.|+..|+.+|.  ....||+|+..+.
T Consensus        15 ~~~C~iC~~~~~~p-----------------~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           15 ECQCGICMEILVEP-----------------V-TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             HHBCTTTCSBCSSC-----------------E-ECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCCCccCCcccCce-----------------e-EcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            46799999888642                 1 12699999999999997  3678999999874

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=97.32  E-value=4.7e-05  Score=53.53  Aligned_cols=65  Identities=17%  Similarity=0.306  Sum_probs=46.0

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc------ccCccccccccccC
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH------IMDLCIECQANQAS  107 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~------~~~~CpiC~~~~~~  107 (153)
                      .++.|+||++.|.+...................+...|+|.||.+|+.+|+      ....||+|+..+..
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            468999999999876544333222222223344467899999999999997      25689999999843

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.29  E-value=0.00012  Score=45.74  Aligned_cols=46  Identities=20%  Similarity=0.285  Sum_probs=35.6

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccccCCC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQASTT  109 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~~~~~  109 (153)
                      .-.|+||+..+.+.                  +.-.|+|+|+..|+.+|  ...||+|++.+...+
T Consensus         6 ~~~C~IC~~~~~~p------------------~~l~CgH~fC~~Ci~~~--~~~CP~Cr~~~~~~~   51 (56)
T 1bor_A            6 FLRCQQCQAEAKCP------------------KLLPCLHTLCSGCLEAS--GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CSSCSSSCSSCBCC------------------SCSTTSCCSBTTTCSSS--SSSCSSCCSSSSCCS
T ss_pred             CCCceEeCCccCCe------------------EEcCCCCcccHHHHccC--CCCCCcCCcEeecCC
Confidence            45799999988652                  11249999999999884  678999999985543

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.26  E-value=5.2e-05  Score=52.86  Aligned_cols=46  Identities=22%  Similarity=0.461  Sum_probs=35.5

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccccc----CccccccccccCC
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIM----DLCIECQANQAST  108 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~----~~CpiC~~~~~~~  108 (153)
                      ..|+||+..+.+.-                  .-.|+|.|+..|+.+|...    ..||+|+..+...
T Consensus        22 ~~C~IC~~~~~~p~------------------~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           22 LECPICLELIKEPV------------------STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (112)
T ss_dssp             TSCSSSCCCCSSCC------------------BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CCCcccChhhcCeE------------------ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence            47999999886421                  1259999999999999733    3899999988543

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=97.24  E-value=5.3e-05  Score=51.34  Aligned_cols=45  Identities=24%  Similarity=0.528  Sum_probs=35.2

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---ccCccccccccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---IMDLCIECQANQ  105 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---~~~~CpiC~~~~  105 (153)
                      .-.|+||.+.|.+.                 +....|+|.|...|+.+|.   ....||+|+..+
T Consensus        13 ~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A           13 ELLCLICKDIMTDA-----------------VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             TTEETTTTEECSSC-----------------EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             CCCCCCCChhhcCc-----------------eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            35799999888652                 2222399999999999996   346899999987

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=97.21  E-value=0.00011  Score=49.44  Aligned_cols=49  Identities=18%  Similarity=0.341  Sum_probs=36.3

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceecc--ccccceeeeeccccc--ccCccccccccccCC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWG--VCNHAFHFHCISRNH--IMDLCIECQANQAST  108 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g--~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~  108 (153)
                      +.+|+||.+++....+.                ..  .|||.|...|+.++.  ....||+|+..+...
T Consensus        11 ~~~CpICle~~~~~d~~----------------~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A           11 PVECPLCMEPLEIDDIN----------------FFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED   63 (78)
T ss_dssp             CCBCTTTCCBCCTTTTT----------------CCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred             CCcCCccCccCcccccc----------------ccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence            35899999987532110                11  399999999998874  567899999998654

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=97.12  E-value=0.00012  Score=51.75  Aligned_cols=46  Identities=26%  Similarity=0.483  Sum_probs=36.8

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~  107 (153)
                      ...|+||++.+.+.                  +.-.|+|.|+..|+.+|.  ....||+|+..+..
T Consensus        23 ~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           23 SISCQICEHILADP------------------VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HTBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCCCcHhcCc------------------EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            36799999988652                  113699999999999997  36789999999854

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=97.06  E-value=0.00016  Score=54.04  Aligned_cols=46  Identities=17%  Similarity=0.413  Sum_probs=36.1

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCC
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAST  108 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~  108 (153)
                      ..|+||++.+.+.-                  .-.|+|.|+..|+.+|.  ....||+|+..+...
T Consensus        79 ~~C~IC~~~~~~pv------------------~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           79 FMCVCCQELVYQPV------------------TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             TBCTTTSSBCSSEE------------------ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CEeecCChhhcCCE------------------EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            47999998886521                  23699999999999997  334899999998543

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=96.92  E-value=0.00012  Score=46.72  Aligned_cols=47  Identities=28%  Similarity=0.511  Sum_probs=37.7

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccccccccc
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQA  106 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~  106 (153)
                      ..+.|+||++.+.+.                 .+...|+|.||..|+.+|. ....||+|+..+.
T Consensus         4 ~~~~C~IC~~~~~~~-----------------~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   51 (68)
T 1chc_A            4 VAERCPICLEDPSNY-----------------SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCSC-----------------EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCeeCCccccCC-----------------cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence            457899999987541                 1234599999999999997 6789999998874

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=96.90  E-value=0.00022  Score=50.70  Aligned_cols=46  Identities=20%  Similarity=0.311  Sum_probs=36.0

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~  107 (153)
                      .-.|+||...+.+.                  +.-.|+|.|+..|+.+|.  ....||+|+..+..
T Consensus        18 ~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           18 KYECPICLMALREA------------------VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             GGBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCcCChhhcCe------------------EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            35799999888652                  122599999999999997  33499999998854

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=96.38  E-value=0.00096  Score=43.82  Aligned_cols=43  Identities=21%  Similarity=0.442  Sum_probs=34.7

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccc-eeeeecccccccCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRNHIMDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~-fh~~c~~~w~~~~~CpiC~~~~~~  107 (153)
                      ...|+||.+.+.+.                  +.-.|+|. |...|+.+|   ..||+|+..+..
T Consensus        24 ~~~C~iC~~~~~~~------------------~~~pCgH~~~C~~C~~~~---~~CP~Cr~~i~~   67 (74)
T 4ic3_A           24 EKLCKICMDRNIAI------------------VFVPCGHLVTCKQCAEAV---DKCPMCYTVITF   67 (74)
T ss_dssp             HTBCTTTSSSBCCE------------------EEETTCCBCCCHHHHTTC---SBCTTTCCBCSE
T ss_pred             CCCCCCCCCCCCCE------------------EEcCCCChhHHHHhhhcC---ccCCCcCcCccC
Confidence            46899999887542                  22369999 999999999   899999998843

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=96.36  E-value=0.00081  Score=57.97  Aligned_cols=45  Identities=20%  Similarity=0.431  Sum_probs=36.6

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccC
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAS  107 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~  107 (153)
                      ..|+||.+.+.+.                  +.-.|+|.||..|+.+|.  ....||+|+..+..
T Consensus       333 ~~C~ICle~~~~p------------------v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          333 QLCKICAENDKDV------------------KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SBCTTTSSSBCCE------------------EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCccCcCCCCe------------------EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            5899998887542                  234699999999999997  47899999998844

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=96.36  E-value=0.00052  Score=50.83  Aligned_cols=75  Identities=20%  Similarity=0.327  Sum_probs=48.1

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCCCCccceEEeeeecc
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQASTTSEECTVAWGVCNH  122 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~~~~~c~~~~~~C~H  122 (153)
                      -.|+||+..+.+.                  +.-.|+|.|...|+.+|.  ....||+|+.+.....+.    ..+.=..
T Consensus        32 ~~C~IC~~~~~~p------------------v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~----~~l~~~~   89 (141)
T 3knv_A           32 YLCSACRNVLRRP------------------FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGI----SILESSS   89 (141)
T ss_dssp             GBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTT----TEECGGG
T ss_pred             cCCCCCChhhcCc------------------EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccc----cccchhh
Confidence            5799999988653                  123699999999999997  335899999976332110    1111235


Q ss_pred             eechHHHHHHHcC-CCCCCC
Q psy16471        123 AFHFHCISRWLKT-RQVCPL  141 (153)
Q Consensus       123 ~FH~~CI~~Wl~~-~~~CP~  141 (153)
                      +|-...+.+=+.. ...||.
T Consensus        90 ~~~d~~~~~~i~~L~v~Cpn  109 (141)
T 3knv_A           90 AFPDNAARREVESLPAVCPS  109 (141)
T ss_dssp             CEECHHHHHHHHTSEEECCS
T ss_pred             hcccHHHHHHHcccccccCC
Confidence            5655566555543 345764

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=96.19  E-value=0.0015  Score=52.63  Aligned_cols=49  Identities=20%  Similarity=0.630  Sum_probs=37.6

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---ccCccccccccccCCC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---IMDLCIECQANQASTT  109 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---~~~~CpiC~~~~~~~~  109 (153)
                      ...|+||+.-+.-             +..|+    .|+|.||.+|+.+|.   ....||.|..+|....
T Consensus       180 i~~C~iC~~iv~~-------------g~~C~----~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~  231 (238)
T 3nw0_A          180 VKICNICHSLLIQ-------------GQSCE----TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI  231 (238)
T ss_dssp             CCBCTTTCSBCSS-------------CEECS----SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred             CCcCcchhhHHhC-------------CcccC----ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence            4679999887652             33443    399999999999996   4569999999996653

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=96.05  E-value=0.0016  Score=41.25  Aligned_cols=51  Identities=18%  Similarity=0.425  Sum_probs=37.1

Q ss_pred             Ccccccccc-ccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCC
Q psy16471         44 VDNCAICRN-HIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAST  108 (153)
Q Consensus        44 ~d~C~IC~~-~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~  108 (153)
                      +..|+||++ .+.+...              ..+...|||.|+..|+.+|.  ....||+|+..+...
T Consensus         3 ~~~C~IC~~~~~~~~~~--------------~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   56 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSL--------------KLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             TTCCSTTTTHHHHCSSC--------------CEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCcCCcCCCCccCCCcc--------------CeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence            467999998 5644211              11234699999999999994  456799999998544

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=95.99  E-value=0.0017  Score=41.48  Aligned_cols=48  Identities=23%  Similarity=0.504  Sum_probs=36.5

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccccc-eeeeeccccc-ccCcccccccccc
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRNH-IMDLCIECQANQA  106 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~-fh~~c~~~w~-~~~~CpiC~~~~~  106 (153)
                      ..+.|.||.+...+.                ..+.+.|+|. |-..|..++. ....||+|++++.
T Consensus         6 ~~~~C~IC~~~~~~~----------------~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDG----------------NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCE----------------EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCe----------------EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            357899998876542                2334579998 8899998886 5578999999984

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=95.80  E-value=0.0021  Score=41.20  Aligned_cols=48  Identities=19%  Similarity=0.449  Sum_probs=35.4

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccccc-eeeeeccccc-ccCcccccccccc
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRNH-IMDLCIECQANQA  106 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~-fh~~c~~~w~-~~~~CpiC~~~~~  106 (153)
                      .++.|.||.+...+.                ..+.+.|+|. |=..|..+|. ....||+|++++.
T Consensus         7 ~~~~C~IC~~~~~~~----------------~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNG----------------CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCE----------------EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCE----------------EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            346799998876542                1123469999 5579999886 6678999999884

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=95.79  E-value=0.0032  Score=44.00  Aligned_cols=67  Identities=9%  Similarity=-0.053  Sum_probs=48.3

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCCCCccceEEeeeecc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQASTTSEECTVAWGVCNH  122 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~~~~~c~~~~~~C~H  122 (153)
                      .-.|+||+.-|.|+-                 +. .|||+|-..||.+|. ....||+|+.++....    .+    = -
T Consensus        29 ~~~CpI~~~~m~dPV-----------------~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~----L~----p-n   81 (100)
T 2kre_A           29 EFRDPLMDTLMTDPV-----------------RL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTESM----LE----P-V   81 (100)
T ss_dssp             TTBCTTTCSBCSSEE-----------------EE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS----SE----E-C
T ss_pred             hhCCcCccCcccCCe-----------------EC-CCCCEEchHHHHHHHHcCCCCCCCCCCCChhh----ce----E-C
Confidence            468999999998732                 22 399999999999997 6789999999985431    11    1 1


Q ss_pred             eechHHHHHHHcCCC
Q psy16471        123 AFHFHCISRWLKTRQ  137 (153)
Q Consensus       123 ~FH~~CI~~Wl~~~~  137 (153)
                      ..-..=|.+|++.+.
T Consensus        82 ~~Lk~~I~~~~~~~~   96 (100)
T 2kre_A           82 PELKEQIQAWMREKQ   96 (100)
T ss_dssp             HHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhh
Confidence            234567888887653

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=95.74  E-value=0.0026  Score=42.98  Aligned_cols=46  Identities=7%  Similarity=-0.166  Sum_probs=37.3

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~  107 (153)
                      .-.|+||+.-|.|+-                 +. .|||+|-..||.+|. ....||+|++.+..
T Consensus        14 ~~~CpI~~~~m~dPV-----------------~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           14 EFRDPLMDTLMTDPV-----------------RL-PSGTVMDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             TTBCTTTCSBCSSEE-----------------EC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             heECcccCchhcCCe-----------------EC-CCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            467999999998732                 22 399999999999997 67899999998844

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.63  E-value=0.0029  Score=47.38  Aligned_cols=45  Identities=20%  Similarity=0.330  Sum_probs=35.9

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccC
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAS  107 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~  107 (153)
                      -.|+||...+.++                  +.-.|+|.|...|+.+|.  ....||+|+..+..
T Consensus        19 ~~C~IC~~~~~~p------------------v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           19 YECPICLMALREA------------------VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             GBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCChhhcCc------------------EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence            5799999988652                  123599999999999997  34599999988754

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=95.40  E-value=0.01  Score=41.80  Aligned_cols=84  Identities=19%  Similarity=0.413  Sum_probs=52.3

Q ss_pred             cccCccccccccccccch-hhhhcCCCCCCccccceeccccccceeeeecccccc-----cC------ccccccccccCC
Q psy16471         41 DIVVDNCAICRNHIMDLC-IECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI-----MD------LCIECQANQAST  108 (153)
Q Consensus        41 d~~~d~C~IC~~~~~d~c-~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~-----~~------~CpiC~~~~~~~  108 (153)
                      +..+|.|.||.......- +.|                ..|..+||..|+.....     .-      .|.+|...-.  
T Consensus         4 ~~~~~~C~~C~~~g~~~~ll~C----------------~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~--   65 (111)
T 2ysm_A            4 GSSGANCAVCDSPGDLLDQFFC----------------TTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGE--   65 (111)
T ss_dssp             CCCCSCBTTTCCCCCTTTSEEC----------------SSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSC--
T ss_pred             CCCCCCCcCCCCCCCCcCCeEC----------------CCCCCCcChHHhCCccccccccCccCCcCCcccccCccCC--
Confidence            345789999976543100 111                35889999999955431     11      3555554432  


Q ss_pred             CCccceEEeeeecceechHHHHHHHcCC----CCCCCCCC
Q psy16471        109 TSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNR  144 (153)
Q Consensus       109 ~~~~c~~~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~  144 (153)
                        ++-.+.-..|...||..|+..=|...    =.||.|+.
T Consensus        66 --~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~  103 (111)
T 2ysm_A           66 --DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI  103 (111)
T ss_dssp             --CTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred             --CCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence              22367778899999999998655442    24777754

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.09  E-value=0.0067  Score=39.63  Aligned_cols=43  Identities=21%  Similarity=0.442  Sum_probs=33.2

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccc-eeeeecccccccCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRNHIMDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~-fh~~c~~~w~~~~~CpiC~~~~~~  107 (153)
                      ...|+||++.+.+.                  +.-.|+|. |...|+.+.   ..||+|+..+..
T Consensus        25 ~~~C~IC~~~~~~~------------------~~~pCgH~~~C~~C~~~~---~~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDRNIAI------------------VFVPCGHLVTCKQCAEAV---DKCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSSCCCB------------------CCSSSCCCCBCHHHHHHC---SBCTTTCCBCCC
T ss_pred             CCCCCcCCCCCCCE------------------EEecCCCHHHHHHHhhCC---CCCccCCceecC
Confidence            35799998887542                  12359999 999999643   789999999854

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=95.01  E-value=0.0069  Score=47.66  Aligned_cols=67  Identities=10%  Similarity=0.073  Sum_probs=45.7

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCCCCccceEEeeeec
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQASTTSEECTVAWGVCN  121 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~~~~~c~~~~~~C~  121 (153)
                      .-.|+||..-|.|+.+                  -.|||+|-..||.+|.  ....||+|+.++....    .+    =+
T Consensus       208 ~~~c~i~~~~~~dPv~------------------~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~----l~----~n  261 (281)
T 2c2l_A          208 YLCGKISFELMREPCI------------------TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ----LI----PN  261 (281)
T ss_dssp             TTBCTTTCSBCSSEEE------------------CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG----CE----EC
T ss_pred             ccCCcCcCCHhcCCeE------------------CCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc----Cc----cc
Confidence            3579999999987422                  2499999999999997  3445999999884321    11    12


Q ss_pred             ceechHHHHHHHcCCC
Q psy16471        122 HAFHFHCISRWLKTRQ  137 (153)
Q Consensus       122 H~FH~~CI~~Wl~~~~  137 (153)
                      +.. ..=|.+|+..++
T Consensus       262 ~~l-~~~i~~~~~~~~  276 (281)
T 2c2l_A          262 LAM-KEVIDAFISENG  276 (281)
T ss_dssp             HHH-HHHHHHHHTTCS
T ss_pred             HHH-HHHHHHHHHHCC
Confidence            222 346778887653

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=95.00  E-value=0.0092  Score=41.45  Aligned_cols=66  Identities=14%  Similarity=-0.028  Sum_probs=47.6

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccc-cceeeeeccccc-ccCccccccccccCCCCccceEEeeeec
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCN-HAFHFHCISRNH-IMDLCIECQANQASTTSEECTVAWGVCN  121 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~-H~fh~~c~~~w~-~~~~CpiC~~~~~~~~~~~c~~~~~~C~  121 (153)
                      +-.|+||+.-|.|+-+                  -.|+ |.|-..||.+|. ....||+|++.+....    .+    = 
T Consensus        22 ~~~CpI~~~~m~dPV~------------------~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~----L~----p-   74 (98)
T 1wgm_A           22 EFLDPIMSTLMCDPVV------------------LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ----IR----P-   74 (98)
T ss_dssp             TTBCTTTCSBCSSEEE------------------CTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT----SE----E-
T ss_pred             hcCCcCccccccCCeE------------------CCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh----ce----E-
Confidence            4689999999987422                  2478 999999999997 5778999999985431    11    1 


Q ss_pred             ceechHHHHHHHcCC
Q psy16471        122 HAFHFHCISRWLKTR  136 (153)
Q Consensus       122 H~FH~~CI~~Wl~~~  136 (153)
                      -..-..=|.+|++.+
T Consensus        75 n~~Lk~~I~~~~~~~   89 (98)
T 1wgm_A           75 NTELKEKIQRWLAER   89 (98)
T ss_dssp             CHHHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHHHc
Confidence            223456788888764

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.81  E-value=0.0053  Score=42.04  Aligned_cols=44  Identities=23%  Similarity=0.417  Sum_probs=33.9

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc-------cCcccc--cccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI-------MDLCIE--CQAN  104 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~-------~~~Cpi--C~~~  104 (153)
                      .-.|+||+..|.|+                 +..-.|||+|-..||.+|..       ...||+  |...
T Consensus         7 ~~~CPI~~~~~~dP-----------------V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            7 GFTCPITKEEMKKP-----------------VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             CCBCTTTCSBCSSE-----------------EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             EeECcCcCchhcCC-----------------EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            45799999998763                 22225999999999999973       248999  8765

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=93.18  E-value=0.043  Score=46.28  Aligned_cols=43  Identities=16%  Similarity=0.447  Sum_probs=34.7

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccc-eeeeecccccccCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRNHIMDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~-fh~~c~~~w~~~~~CpiC~~~~~~  107 (153)
                      +..|+||...+.+.                  +.-.|+|. |...|+.+|   ..||+|+..+..
T Consensus       295 ~~~C~IC~~~~~~~------------------v~lpCgH~~fC~~C~~~~---~~CP~CR~~i~~  338 (345)
T 3t6p_A          295 ERTCKVCMDKEVSV------------------VFIPCGHLVVCQECAPSL---RKCPICRGIIKG  338 (345)
T ss_dssp             TCBCTTTSSSBCCE------------------EEETTCCEEECTTTGGGC---SBCTTTCCBCCE
T ss_pred             CCCCCccCCcCCce------------------EEcCCCChhHhHHHHhcC---CcCCCCCCCccC
Confidence            46899999887642                  12269999 999999998   799999999843

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B

Probab=93.12  E-value=0.028  Score=36.94  Aligned_cols=32  Identities=25%  Similarity=0.546  Sum_probs=22.5

Q ss_pred             eEEeeeecceechHHHHHHHcC-----CCCCCCCCCC
Q psy16471        114 TVAWGVCNHAFHFHCISRWLKT-----RQVCPLDNRE  145 (153)
Q Consensus       114 ~~~~~~C~H~FH~~CI~~Wl~~-----~~~CP~Cr~~  145 (153)
                      .+.--.|...||..|+..=|..     .=.||.|+++
T Consensus        33 ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~   69 (70)
T 3asl_A           33 QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND   69 (70)
T ss_dssp             EEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred             EEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence            6666678999999999843332     1269999864

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=92.76  E-value=0.022  Score=40.41  Aligned_cols=63  Identities=17%  Similarity=0.429  Sum_probs=41.0

Q ss_pred             ccccceeeeeccc------------cc--ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC----CCCC
Q psy16471         79 VCNHAFHFHCISR------------NH--IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR----QVCP  140 (153)
Q Consensus        79 ~C~H~fh~~c~~~------------w~--~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~----~~CP  140 (153)
                      .|+.+||.-|+.-            |.  .=..|.+|...-.   .++-.+.-..|...||..|+..=|..-    =.||
T Consensus        31 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~---~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~  107 (112)
T 3v43_A           31 DCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGK---NADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQ  107 (112)
T ss_dssp             TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCC---TTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCT
T ss_pred             hcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCC---CccceEEcCCCCCeeecccCCCCCCCCCCCCeECC
Confidence            4899999999853            22  1114666665321   122366677899999999997655442    2699


Q ss_pred             CCCC
Q psy16471        141 LDNR  144 (153)
Q Consensus       141 ~Cr~  144 (153)
                      .|+.
T Consensus       108 ~C~~  111 (112)
T 3v43_A          108 ICRP  111 (112)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            9975

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=92.57  E-value=0.045  Score=36.28  Aligned_cols=43  Identities=16%  Similarity=0.468  Sum_probs=33.0

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccc-eeeeecccccccCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRNHIMDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~-fh~~c~~~w~~~~~CpiC~~~~~~  107 (153)
                      ...|.||.+.+.+.                  +...|+|. |-..|+.++.   .||+|+..+..
T Consensus        18 ~~~C~IC~~~~~~~------------------v~~pCgH~~~C~~C~~~~~---~CP~Cr~~i~~   61 (79)
T 2yho_A           18 AMLCMVCCEEEINS------------------TFCPCGHTVCCESCAAQLQ---SCPVCRSRVEH   61 (79)
T ss_dssp             HTBCTTTSSSBCCE------------------EEETTCBCCBCHHHHTTCS---BCTTTCCBCCE
T ss_pred             CCEeEEeCcccCcE------------------EEECCCCHHHHHHHHHhcC---cCCCCCchhhC
Confidence            35799998876542                  23469999 8899998873   99999998843

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.32  E-value=0.053  Score=34.99  Aligned_cols=43  Identities=19%  Similarity=0.526  Sum_probs=32.8

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccc-eeeeecccccccCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA-FHFHCISRNHIMDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~-fh~~c~~~w~~~~~CpiC~~~~~~  107 (153)
                      ...|.||+....+                  .+...|+|. |-..|..+   ...||+|++.+..
T Consensus        15 ~~~C~IC~~~~~~------------------~v~~pCgH~~~C~~C~~~---~~~CP~CR~~i~~   58 (68)
T 2ea5_A           15 SKDCVVCQNGTVN------------------WVLLPCRHTCLCDGCVKY---FQQCPMCRQFVQE   58 (68)
T ss_dssp             SSCCSSSSSSCCC------------------CEETTTTBCCSCTTHHHH---CSSCTTTCCCCCC
T ss_pred             CCCCCCcCcCCCC------------------EEEECCCChhhhHHHHhc---CCCCCCCCcchhc
Confidence            4689999887654                  223459998 99999884   4789999998844

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=90.95  E-value=0.057  Score=44.36  Aligned_cols=48  Identities=19%  Similarity=0.234  Sum_probs=36.3

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc---cCcccc--ccccccC
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI---MDLCIE--CQANQAS  107 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~---~~~Cpi--C~~~~~~  107 (153)
                      ..-+|+||...|.++.                 .--.|||.|-..||.+|..   ...||+  |++.+..
T Consensus       180 ~el~CPIcl~~f~DPV-----------------ts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          180 IELTCPITCKPYEAPL-----------------ISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             CCSBCTTTSSBCSSEE-----------------EESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             eeeECcCccCcccCCe-----------------eeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            3458999999997732                 1126999999999999863   357999  9987743

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=90.88  E-value=0.033  Score=47.73  Aligned_cols=52  Identities=21%  Similarity=0.385  Sum_probs=37.8

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc------------cCccccccccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI------------MDLCIECQANQ  105 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~------------~~~CpiC~~~~  105 (153)
                      ...|+||.+.+.+        .+..|...|.  -..|+|.||..|+.+|..            ...||.|++++
T Consensus       308 ~~ECaICys~~l~--------~g~lPdk~C~--n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI  371 (381)
T 3k1l_B          308 ELRCNICFAYRLD--------GGEVPLVSCD--NAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL  371 (381)
T ss_dssp             CCSCSSSCCSSCT--------TCCCCCBCCS--CTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred             CccCcccceeecC--------CCCCcccccc--CCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence            3579999988764        2334455551  136999999999999961            16799999886

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=90.36  E-value=0.084  Score=40.72  Aligned_cols=66  Identities=8%  Similarity=0.007  Sum_probs=45.9

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc--cCccccccccccCCCCccceEEeeeecc
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI--MDLCIECQANQASTTSEECTVAWGVCNH  122 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~--~~~CpiC~~~~~~~~~~~c~~~~~~C~H  122 (153)
                      -.|+||..-|.|+-+                  -.|||+|-..||.+|..  ...||+|+.++....    .+    = .
T Consensus       107 f~CPI~~elm~DPV~------------------~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~----L~----p-N  159 (179)
T 2f42_A          107 LCGKISFELMREPCI------------------TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ----LI----P-N  159 (179)
T ss_dssp             GBCTTTCSBCSSEEE------------------CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG----CE----E-C
T ss_pred             hcccCccccCCCCeE------------------CCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh----Cc----c-h
Confidence            579999999887422                  25899999999999972  346999999884431    11    1 2


Q ss_pred             eechHHHHHHHcCCC
Q psy16471        123 AFHFHCISRWLKTRQ  137 (153)
Q Consensus       123 ~FH~~CI~~Wl~~~~  137 (153)
                      ..-..=|.+|+..++
T Consensus       160 ~~Lk~~Ie~~~~~~~  174 (179)
T 2f42_A          160 LAMKEVIDAFIQENG  174 (179)
T ss_dssp             HHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHCC
Confidence            235567788876653

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=89.48  E-value=0.17  Score=35.89  Aligned_cols=63  Identities=17%  Similarity=0.387  Sum_probs=41.2

Q ss_pred             ccccceeeeecccc------------c--ccCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC----CCCC
Q psy16471         79 VCNHAFHFHCISRN------------H--IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR----QVCP  140 (153)
Q Consensus        79 ~C~H~fh~~c~~~w------------~--~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~----~~CP  140 (153)
                      .|..+||.-|+...            .  .=..|.+|...-..    .-.+.-..|...||..|+..=|..-    =.||
T Consensus        28 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~----~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~  103 (114)
T 2kwj_A           28 DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSEND----DQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCH  103 (114)
T ss_dssp             SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTT----TTEEECSSSCCEEETTTSSSCCSSCCSSCCCCH
T ss_pred             CCCCccchhhCCChhhhhhccCCCccCccccCccCcccccCCC----CceEEcCCCCccccccccCCCccCCCCCCeECc
Confidence            48999999998543            1  11146666654322    2377778899999999998544332    1488


Q ss_pred             CCCCC
Q psy16471        141 LDNRE  145 (153)
Q Consensus       141 ~Cr~~  145 (153)
                      .|+..
T Consensus       104 ~C~~~  108 (114)
T 2kwj_A          104 LCWEL  108 (114)
T ss_dssp             HHHHH
T ss_pred             cccch
Confidence            87654

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=89.21  E-value=0.098  Score=35.08  Aligned_cols=44  Identities=25%  Similarity=0.535  Sum_probs=27.3

Q ss_pred             cccccccccCCCCccceEEeeeecceechHHHHHHHcCC-----CCCCCCCCC
Q psy16471         98 CIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-----QVCPLDNRE  145 (153)
Q Consensus        98 CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-----~~CP~Cr~~  145 (153)
                      |.+|...-..    +-.+.-..|...||..|+..=|...     =.||.|+++
T Consensus        29 C~vC~~~~d~----~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d   77 (77)
T 3shb_A           29 CHLCGGRQDP----DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND   77 (77)
T ss_dssp             BTTTCCCSCG----GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred             CCccCCCCCC----cceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence            5555544322    2366667899999999998554431     269998864

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=88.88  E-value=0.069  Score=33.86  Aligned_cols=49  Identities=22%  Similarity=0.358  Sum_probs=33.4

Q ss_pred             ccCccccccccccccchhhhhcCCCCCCccccceecccccc---ceeeeeccccc---ccCcccccccccc
Q psy16471         42 IVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNH---AFHFHCISRNH---IMDLCIECQANQA  106 (153)
Q Consensus        42 ~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H---~fh~~c~~~w~---~~~~CpiC~~~~~  106 (153)
                      ...+.|.||+.+..+. .  ..        -|     .|.+   .||..|+.+|.   .+..||+|+..|.
T Consensus         4 ~~~~~CrIC~~~~~~~-l--~~--------PC-----~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNE-R--FR--------AC-----GCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCC-C--CC--------SC-----CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCc-e--ec--------Cc-----CCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            3457899998763221 0  00        11     3445   89999999996   3678999999874

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=88.74  E-value=0.28  Score=31.79  Aligned_cols=45  Identities=22%  Similarity=0.321  Sum_probs=33.2

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC----CCCCCCCCc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ----VCPLDNREW  146 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~----~CP~Cr~~w  146 (153)
                      ...|.+|...   +    -.+.-..|...||..|+..-|..-.    .||.|+++-
T Consensus        12 ~~~C~vC~~~---~----~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           12 GARCGVCGDG---T----DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TCCCTTTSCC---T----TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCcCCCCCC---C----eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            3457888642   1    1667778999999999988887643    699998763

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=88.52  E-value=0.25  Score=29.82  Aligned_cols=44  Identities=25%  Similarity=0.501  Sum_probs=29.3

Q ss_pred             ccccccccccCCCCccceEEeeeecceechHHHHHHHcCC----CCCCCCCC
Q psy16471         97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNR  144 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~  144 (153)
                      .|.+|+..-..+    -.+.-..|...||..|+..=|...    =.||.|+.
T Consensus         2 ~C~vC~~~~~~~----~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDD----KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCS----CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCC----CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            467777653222    266667899999999996544332    24999875

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=88.22  E-value=0.084  Score=35.56  Aligned_cols=46  Identities=15%  Similarity=0.387  Sum_probs=31.8

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---------ccCcccc--cccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---------IMDLCIE--CQAN  104 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---------~~~~Cpi--C~~~  104 (153)
                      .-+|+||.+.+.+.-.               ..-..|+|.|-..|+.++.         .+..||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~~~---------------~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQM---------------TTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGE---------------EEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccc---------------eEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            4579999988764211               0112499999999997763         1347999  9877

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=87.61  E-value=0.26  Score=38.07  Aligned_cols=50  Identities=18%  Similarity=0.333  Sum_probs=35.2

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHH------HHc-----CCCCCCCCCCC
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR------WLK-----TRQVCPLDNRE  145 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~------Wl~-----~~~~CP~Cr~~  145 (153)
                      ..||+|..+|..+..+.-.|--..|..-||..|+.-      =+.     ..=.||.|+..
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~   63 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER   63 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred             CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence            469999999966543333666678999999999842      111     13479999864

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.55  E-value=0.23  Score=33.15  Aligned_cols=45  Identities=22%  Similarity=0.496  Sum_probs=30.3

Q ss_pred             ccccccccccCCCCccceEEeeeecceechHHHHHHHcC-----CCCCCCCCCC
Q psy16471         97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-----RQVCPLDNRE  145 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-----~~~CP~Cr~~  145 (153)
                      .|.+|...-..+    -.+.--.|...||..|+..=|..     .=.||.|+++
T Consensus        28 ~C~vC~~~~~~~----~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~d   77 (77)
T 2e6s_A           28 SCRVCGGKHEPN----MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD   77 (77)
T ss_dssp             SCSSSCCCCCST----TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCCC
T ss_pred             CCcCcCCcCCCC----CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccCc
Confidence            577787643222    26777789999999999843332     1259988763

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=85.49  E-value=0.82  Score=29.92  Aligned_cols=61  Identities=20%  Similarity=0.307  Sum_probs=35.1

Q ss_pred             cceeeeecccccccCccccccccccCCCCccceEEeeeecceechHHHHHHHcC--CCCCCCCCC
Q psy16471         82 HAFHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNR  144 (153)
Q Consensus        82 H~fh~~c~~~w~~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~  144 (153)
                      |.-|.|--+.......|.+|...-...  ++-.+.--.|.-.||..|+.-=+.-  .=.||.|+.
T Consensus         3 ~~~~~~~~~~~~~~~~C~vC~~~~s~~--~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~   65 (71)
T 2ku3_A            3 HHHHHHMQSLIDEDAVCSICMDGESQN--SNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ   65 (71)
T ss_dssp             -------CCCCCSSCSCSSSCCCCCCS--SSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred             cccccccccCCCCCCCCCCCCCCCCCC--CCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence            444555556666788899998764221  1227777789999999999732211  114776653

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=84.64  E-value=0.27  Score=39.36  Aligned_cols=46  Identities=24%  Similarity=0.505  Sum_probs=27.6

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHcC--CC---CCCCCCCC
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT--RQ---VCPLDNRE  145 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~--~~---~CP~Cr~~  145 (153)
                      -.|.+|...-..+    -.+.--.|...||..|+..=|..  ..   .||.|+.+
T Consensus       175 c~C~vC~~~~~~~----~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~  225 (226)
T 3ask_A          175 CACHLCGGRQDPD----KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND  225 (226)
T ss_dssp             TSCSSSCCCCC------CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred             CCCcCCCCCCCCC----CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence            3678887643222    26666789999999999854433  12   59999764

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=83.54  E-value=0.28  Score=31.00  Aligned_cols=47  Identities=11%  Similarity=-0.122  Sum_probs=36.0

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST  108 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~  108 (153)
                      -.|+|++..|.|+                 ++.-.+||.|-..+|.+|. ....||+.++++...
T Consensus         4 ~~CpIs~~~m~dP-----------------V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~   51 (61)
T 2bay_A            4 MLCAISGKVPRRP-----------------VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   51 (61)
T ss_dssp             CCCTTTCSCCSSE-----------------EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             EEecCCCCCCCCC-----------------EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence            4699999888763                 1222589999999999997 566799999887443

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=82.49  E-value=0.66  Score=29.26  Aligned_cols=32  Identities=22%  Similarity=0.567  Sum_probs=21.5

Q ss_pred             eEEeeeecceechHHHHHHHcCC----CCCCCCCCC
Q psy16471        114 TVAWGVCNHAFHFHCISRWLKTR----QVCPLDNRE  145 (153)
Q Consensus       114 ~~~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~  145 (153)
                      .+.--.|.-.||..|+..=+...    =.||.|+++
T Consensus        23 ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A           23 IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            45555688888888888654432    258888764

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=82.07  E-value=0.76  Score=30.98  Aligned_cols=34  Identities=18%  Similarity=0.400  Sum_probs=24.7

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHH-HH
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR-WL  133 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~-Wl  133 (153)
                      ..|++|...+...+    +..-+.|+|.|...|+.+ |.
T Consensus         4 ~~C~~C~~~~~~~a----v~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            4 VLCQFCDQDPAQDA----VKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CBCTTCCSSSCCBC----CEEETTTTEEECHHHHHHHSC
T ss_pred             CCCcCCCCCCCCCc----eEECCcCChHHhHHHCHHHhc
Confidence            46899997643332    333388999999999998 54

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=80.99  E-value=0.47  Score=36.68  Aligned_cols=32  Identities=19%  Similarity=0.373  Sum_probs=17.5

Q ss_pred             eEEeeeecceechHHHHHHHcCC----CCCCCCCCC
Q psy16471        114 TVAWGVCNHAFHFHCISRWLKTR----QVCPLDNRE  145 (153)
Q Consensus       114 ~~~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~  145 (153)
                      .+.-..|...||..|+..-|..-    =.||.|+..
T Consensus        19 ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~   54 (207)
T 3u5n_A           19 LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI   54 (207)
T ss_dssp             EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred             eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence            33344566667777765544432    147777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	153
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	1e-22
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	2e-04
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	4e-04
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	2e-04
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	8e-04

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (206), Expect = 1e-22
 Identities = 86/128 (67%), Positives = 87/128 (67%), Gaps = 40/128 (31%)

Query: 24  KKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHA 83
           KKRF+VKKWNAVALWAWDIVVDNCAIC                                 
Sbjct: 1   KKRFEVKKWNAVALWAWDIVVDNCAIC--------------------------------- 27

Query: 84  FHFHCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 143
                  RNHIMDLCIECQANQAS TSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN
Sbjct: 28  -------RNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 80

Query: 144 REWEFQKY 151
           REWEFQKY
Sbjct: 81  REWEFQKY 88

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 2e-04
 Identities = 7/51 (13%), Positives = 11/51 (21%)

Query: 87  HCISRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ 137
             I    +           +             C+HAFH  C+        
Sbjct: 28  CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN 78

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 4e-04
 Identities = 9/47 (19%), Positives = 15/47 (31%)

Query: 45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISR 91
          ++C IC   +           +             C+HAFH  C+  
Sbjct: 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLA 72

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 35.2 bits (81), Expect = 2e-04
 Identities = 16/47 (34%), Positives = 19/47 (40%)

Query: 95  MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 141
           MD  +EC    A     E       C H FH  C+  WL +   CPL
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPL 48

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 34.2 bits (78), Expect = 8e-04
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 9/50 (18%)

Query: 107 STTSEECTVAWGV---------CNHAFHFHCISRWLKTRQVCPLDNREWE 147
           +T +E C +             C HAF + CI+RW++    CPL     E
Sbjct: 2   ATVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	153
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.96
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.51
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.51
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.47
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.35
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.28
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.23
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.21
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.94
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.9
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.88
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.85
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.8
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.66
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.55
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.53
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.46
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.37
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.3
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.07
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	97.86
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	97.75
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	97.74
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	97.34
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	97.32
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.25
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	97.07
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	96.74
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	96.62
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	96.09
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	96.06
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	94.51
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	94.01
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	86.71
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	85.63
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	83.48
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	82.76
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	80.27

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-29  Score=174.76  Aligned_cols=88  Identities=98%  Similarity=1.758  Sum_probs=76.0

Q ss_pred             cceEEEEEEEeEEeeeecccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccc
Q psy16471         24 KKRFDVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQA  103 (153)
Q Consensus        24 ~~~~~vk~w~~va~w~wd~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~  103 (153)
                      +++|+||+|++|+.|+||..+|.|+||++++.++++.|..+....+.                                 
T Consensus         1 ~~~~~ik~~~av~~w~~d~~~d~C~IC~~~~~~~~~~~~~~~~~~~~---------------------------------   47 (88)
T d3dplr1           1 KKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATS---------------------------------   47 (88)
T ss_dssp             CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC-----------------------------------
T ss_pred             CCceEEeeEEEEEEEeecCCCCcCEEccchhhCcccccccccccccc---------------------------------
Confidence            47899999999999999999999999999999988887664332222                                 


Q ss_pred             cccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccccc
Q psy16471        104 NQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY  151 (153)
Q Consensus       104 ~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~  151 (153)
                             ..+.++.++|||.||.+||.+||+.+++||+||++|.+|||
T Consensus        48 -------~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~   88 (88)
T d3dplr1          48 -------EECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY   88 (88)
T ss_dssp             --------CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEEEC
T ss_pred             -------ccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccccccC
Confidence                   23367889999999999999999999999999999999997

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.51  E-value=3.5e-15  Score=94.47  Aligned_cols=49  Identities=27%  Similarity=0.536  Sum_probs=40.7

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      ..|+||+.++..+.   ..+..+.|+|.||..||.+||+++++||+||++..
T Consensus         6 ~~C~ICl~~~~~~~---~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           6 VECAVCLAELEDGE---EARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCCTTTCCCCCTTS---CCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCeEECccccCCC---EEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            45899999996542   24445679999999999999999999999999854

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=5e-15  Score=105.01  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=32.2

Q ss_pred             cceEEeeeecceechHHHHHHHcCC-----CCCCCCCCCcccc
Q psy16471        112 ECTVAWGVCNHAFHFHCISRWLKTR-----QVCPLDNREWEFQ  149 (153)
Q Consensus       112 ~c~~~~~~C~H~FH~~CI~~Wl~~~-----~~CP~Cr~~w~~~  149 (153)
                      +..+.+++|||+||..||.+||+++     .+||+||+.|-.+
T Consensus        53 ~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          53 MVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             ccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            4477889999999999999999864     3799999998654

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.47  E-value=9.4e-15  Score=95.60  Aligned_cols=34  Identities=35%  Similarity=0.716  Sum_probs=30.6

Q ss_pred             eEEeeeecceechHHHHHHHcCCCCCCCCCCCcc
Q psy16471        114 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  147 (153)
Q Consensus       114 ~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~  147 (153)
                      .++.++|||.||..||.+|++.+.+||+||++..
T Consensus        18 ~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_          18 YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            3466899999999999999999999999999864

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=8.9e-14  Score=86.69  Aligned_cols=48  Identities=15%  Similarity=0.265  Sum_probs=38.5

Q ss_pred             ccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-CCCCCCCCCcc
Q psy16471         97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWE  147 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~w~  147 (153)
                      .||||+.++....   -.+...+|||.||..||.+|+++. .+||+||++|.
T Consensus         2 eCpICl~~~~~~~---~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           2 ECPLCMEPLEIDD---INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             EETTTTEECCGGG---TTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCcCCChhhhCCC---ceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            3899999985432   234556899999999999999974 57999999975

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7.5e-13  Score=85.77  Aligned_cols=52  Identities=15%  Similarity=0.346  Sum_probs=39.9

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHcC-CCCCCCCCCCcccc
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQ  149 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~w~~~  149 (153)
                      ..||||+.++...+  +..++..+|||.||..||.+|+++ +.+||+||++.+..
T Consensus         4 ~~CpIC~~~~~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~   56 (65)
T d1g25a_           4 QGCPRCKTTKYRNP--SLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             TCCSTTTTHHHHCS--SCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCCcCCceeecCC--ceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccc
Confidence            57999998763332  225566789999999999999976 45799999986544

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.23  E-value=1e-12  Score=83.59  Aligned_cols=32  Identities=19%  Similarity=0.402  Sum_probs=27.2

Q ss_pred             eeecceechHHHHHHHcC--CCCCCCCCCCcccc
Q psy16471        118 GVCNHAFHFHCISRWLKT--RQVCPLDNREWEFQ  149 (153)
Q Consensus       118 ~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~w~~~  149 (153)
                      ..|+|.||..||.+|++.  +.+||+||++|+++
T Consensus        27 ~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~k   60 (60)
T d1vyxa_          27 TGELENVHRSCLSTWLTISRNTACQICGVVYNTR   60 (60)
T ss_dssp             SSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCCC
T ss_pred             CCCCCEEcHHHHHHHHhhCCCCCCcccCCeeecC
Confidence            347899999999999965  45899999999864

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=2.7e-12  Score=80.87  Aligned_cols=49  Identities=14%  Similarity=0.197  Sum_probs=41.8

Q ss_pred             ccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccccc
Q psy16471         97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY  151 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~~  151 (153)
                      .||||.+.+.+      +++...|||+|++.||.+||+.+++||+||++-..+.+
T Consensus         2 ~C~Ic~~~~~~------Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dL   50 (56)
T d2baya1           2 LCAISGKVPRR------PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI   50 (56)
T ss_dssp             CCTTTCSCCSS------EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred             CCccCCchHHh------cCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhc
Confidence            58999988844      66677899999999999999999999999998765543

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=9.8e-12  Score=83.29  Aligned_cols=44  Identities=30%  Similarity=0.676  Sum_probs=34.6

Q ss_pred             ccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-CCCCCCCCCcc
Q psy16471         97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWE  147 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~w~  147 (153)
                      .|+||...+.       .++.++|||.||..||.+||+.+ ++||+||.+..
T Consensus        25 ~C~IC~~~~~-------~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~   69 (79)
T d1fbva4          25 LCKICAENDK-------DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK   69 (79)
T ss_dssp             BCTTTSSSBC-------CEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCC
T ss_pred             CCccCCCcCC-------CeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCcc
Confidence            4677765542       23567899999999999999864 67999999865

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.9e-10  Score=79.88  Aligned_cols=47  Identities=21%  Similarity=0.424  Sum_probs=37.7

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHcCC---CCCCCCCCCcccc
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDNREWEFQ  149 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~---~~CP~Cr~~w~~~  149 (153)
                      -.||||...+..      + +.++|||.|+..||.+|++.+   ..||+||.+....
T Consensus        22 l~CpIC~~~~~~------p-v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (103)
T d1jm7a_          22 LECPICLELIKE------P-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (103)
T ss_dssp             TSCSSSCCCCSS------C-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             cCCCccCchhCC------e-EEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChh
Confidence            359999988743      2 456899999999999999875   3799999886543

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=3.5e-10  Score=77.09  Aligned_cols=47  Identities=28%  Similarity=0.341  Sum_probs=38.1

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-CCCCCCCCCcccc
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWEFQ  149 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~w~~~  149 (153)
                      -.||||...+..      + +.++|||.|+..||.+|++.+ .+||+||.+....
T Consensus        24 l~C~IC~~~~~~------p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~   71 (86)
T d1rmda2          24 ISCQICEHILAD------P-VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (86)
T ss_dssp             TBCTTTCSBCSS------E-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             cCCccCCcchhc------c-eecCCCChhhHHHHHHHHhhCCCcCcccCCCCChh
Confidence            469999988743      3 557899999999999999865 5799999986543

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.5e-10  Score=78.55  Aligned_cols=75  Identities=37%  Similarity=0.614  Sum_probs=59.1

Q ss_pred             CccccceEEEEEEEeE-----EeeeecccCccccccccccccc-hhhhhcCCCCCCccccceeccccccceeeeeccccc
Q psy16471         20 TKGEKKRFDVKKWNAV-----ALWAWDIVVDNCAICRNHIMDL-CIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH   93 (153)
Q Consensus        20 ~~~~~~~~~vk~w~~v-----a~w~wd~~~d~C~IC~~~~~d~-c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~   93 (153)
                      +++++++.+|+.|.|.     ++++.+...+.+++|..+..+. ...+            .++.+.|+|.||.+|+.+|+
T Consensus         3 ~~~ik~~~av~~w~~d~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~C~H~FH~~Ci~~Wl   70 (88)
T d3dplr1           3 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEEC------------TVAWGVCNHAFHFHCISRWL   70 (88)
T ss_dssp             SEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CC------------CEEEETTSCEEEHHHHHHHH
T ss_pred             ceEEeeEEEEEEEeecCCCCcCEEccchhhCccccccccccccccccC------------CeEEccccCcccHHHHHHHH
Confidence            5678899999999996     6789999999999987654431 1111            13456799999999999998


Q ss_pred             -ccCcccccccccc
Q psy16471         94 -IMDLCIECQANQA  106 (153)
Q Consensus        94 -~~~~CpiC~~~~~  106 (153)
                       .+..||+|+++|.
T Consensus        71 ~~~~~CP~CR~~~~   84 (88)
T d3dplr1          71 KTRQVCPLDNREWE   84 (88)
T ss_dssp             TTCSBCSSSCSBCC
T ss_pred             HHCCcCCCCCCccc
Confidence             8889999999983

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.3e-10  Score=73.27  Aligned_cols=44  Identities=23%  Similarity=0.532  Sum_probs=35.8

Q ss_pred             ccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccc
Q psy16471         97 LCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK  150 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~  150 (153)
                      .|+||...+...       +.++|||+||..||.+|   +.+||+||++..+..
T Consensus         8 ~C~IC~~~~~~p-------~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           8 RCQQCQAEAKCP-------KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             SCSSSCSSCBCC-------SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             CCcccCcccCCC-------EEecCCCHHhHHHHHcC---CCcCcCCCCcccCCC
Confidence            699999888432       45789999999999876   678999999976543

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.6e-10  Score=77.59  Aligned_cols=47  Identities=26%  Similarity=0.458  Sum_probs=37.4

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCccccc
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK  150 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~~  150 (153)
                      -.||||...+..      ++....|||.||..||.+|+.  ..||+||.+.....
T Consensus        23 l~C~IC~~~~~~------pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~   69 (97)
T d1jm7b_          23 LRCSRCTNILRE------PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD   69 (97)
T ss_dssp             TSCSSSCSCCSS------CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred             CCCccCCchhhc------CceeCCCCCchhHHHHHHHHh--ccccccCCcCchhh
Confidence            369999998854      445568999999999999985  45999998765443

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.66  E-value=2.5e-09  Score=66.85  Aligned_cols=48  Identities=27%  Similarity=0.499  Sum_probs=36.9

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQ  105 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~  105 (153)
                      .+.|+||+.+|.+.             +.. ..-..|+|.||..|+.+|. .+..||+||+++
T Consensus         5 ~~~C~ICl~~~~~~-------------~~~-~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           5 GVECAVCLAELEDG-------------EEA-RFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             SCCCTTTCCCCCTT-------------SCC-EECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCeEECccccCC-------------CEE-EEeCCCCCcccHHHHHHHHHhCCcCCCCCCEe
Confidence            35699999998642             111 1223599999999999997 778999999875

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.55  E-value=2.6e-08  Score=65.46  Aligned_cols=48  Identities=13%  Similarity=0.233  Sum_probs=38.8

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-CCCCCCCCCcccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWEFQ  149 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~w~~~  149 (153)
                      .-.||||...+.+      + +.++|||+|.+.||.+|++.+ ..||.|+.+....
T Consensus         8 ~l~CpIc~~~m~d------P-V~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           8 YFRCPISLELMKD------P-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSCTTTSCCCSS------E-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             cCCCcCcCchhhC------c-eEccCCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            3469999988844      4 456899999999999999875 5699999886543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=2.5e-08  Score=65.95  Aligned_cols=47  Identities=6%  Similarity=-0.074  Sum_probs=38.2

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHcCC-CCCCCCCCCcccc
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWEFQ  149 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~w~~~  149 (153)
                      -.||||...+..      + +.++|||+|...||.+|+..+ .+||+||.+....
T Consensus         8 l~CpIc~~l~~d------P-v~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~   55 (80)
T d2c2la2           8 LCGKISFELMRE------P-CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE   55 (80)
T ss_dssp             TBCTTTCSBCSS------E-EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             ccCcCcCchhhh------h-cccCCcCeecHHHHHHHHhcCCccCCCcccccccc
Confidence            369999988844      4 467999999999999999764 5799999886543

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.5e-08  Score=62.33  Aligned_cols=48  Identities=19%  Similarity=0.328  Sum_probs=35.9

Q ss_pred             cccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccC
Q psy16471         46 NCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAS  107 (153)
Q Consensus        46 ~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~  107 (153)
                      -|+||.++|.+....              +..-.|+|.||..|+.+|.  .+..||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~--------------~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDIN--------------FFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTT--------------CCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCce--------------EEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            389999988653221              1122599999999999997  45679999999854

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=4.2e-08  Score=62.73  Aligned_cols=53  Identities=17%  Similarity=0.336  Sum_probs=38.1

Q ss_pred             cCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCC
Q psy16471         43 VVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAST  108 (153)
Q Consensus        43 ~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~  108 (153)
                      .+.+|+||++++...             .....+.-.|+|.||..|+.+|.  ....||+|++.+...
T Consensus         2 dd~~CpIC~~~~~~~-------------~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~   56 (65)
T d1g25a_           2 DDQGCPRCKTTKYRN-------------PSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             CTTCCSTTTTHHHHC-------------SSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCCCCcCCceeecC-------------CceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccc
Confidence            467899999876421             11122234699999999999996  455799999988543

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.3e-07  Score=63.75  Aligned_cols=49  Identities=14%  Similarity=0.047  Sum_probs=39.7

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCCCCCCCCCCCcccc
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ  149 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~w~~~  149 (153)
                      .-.||||..-+.+      +++...|||.|-+.||.+||+.+.+||+||.+....
T Consensus        22 ~f~CPI~~~lm~d------PV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~   70 (98)
T d1wgma_          22 EFLDPIMSTLMCD------PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             TTBCTTTCSBCSS------EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             HhCCcCchhHHHH------HHhcccccchhhHHHHHHHHHhcCCcccccccccch
Confidence            4579999998854      555555667999999999999999999999986543

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=5.9e-07  Score=60.34  Aligned_cols=45  Identities=16%  Similarity=0.372  Sum_probs=34.6

Q ss_pred             cCccccccccccCCCCccceEEeeeecceechHHHHHHHcCC--------CCCCCCC
Q psy16471         95 MDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPLDN  143 (153)
Q Consensus        95 ~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~--------~~CP~Cr  143 (153)
                      ...|+||...+....    .+..+.|+|.|+..||.+|++++        -.||.|+
T Consensus         5 ~~~C~IC~~~~~~~~----~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           5 SSGCKLCLGEYPVEQ----MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             BCCCSSSCCCCBGGG----EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCcCccCCCcccCCc----eEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            346899998884432    56677899999999999999752        2599864

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=1.1e-06  Score=54.27  Aligned_cols=46  Identities=11%  Similarity=-0.103  Sum_probs=37.7

Q ss_pred             cccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccCC
Q psy16471         46 NCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAST  108 (153)
Q Consensus        46 ~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~~  108 (153)
                      .|+||++.+.+.                 ++...|||.|+..||.+|. .+..||+|++++...
T Consensus         2 ~C~Ic~~~~~~P-----------------v~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVPRRP-----------------VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCCSSE-----------------EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             CCccCCchHHhc-----------------CccCCCCCcccHHHHHHHHhhccCCCccCCcCCHH
Confidence            599999988762                 2344699999999999997 778899999988544

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=5.6e-06  Score=55.97  Aligned_cols=45  Identities=27%  Similarity=0.472  Sum_probs=35.2

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccccC
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQAS  107 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~~~  107 (153)
                      -+|+||.+.|.++                 +.-..|+|.|+..|+.+|.. ..||.|+.++..
T Consensus        23 l~C~IC~~~~~~p-----------------v~~~~CgH~fC~~Ci~~~~~-~~CP~Cr~~~~~   67 (97)
T d1jm7b_          23 LRCSRCTNILREP-----------------VCLGGCEHIFCSNCVSDCIG-TGCPVCYTPAWI   67 (97)
T ss_dssp             TSCSSSCSCCSSC-----------------BCCCSSSCCBCTTTGGGGTT-TBCSSSCCBCSC
T ss_pred             CCCccCCchhhcC-----------------ceeCCCCCchhHHHHHHHHh-ccccccCCcCch
Confidence            3799999998762                 11235999999999999984 359999988744

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4.9e-06  Score=51.61  Aligned_cols=43  Identities=21%  Similarity=0.311  Sum_probs=34.3

Q ss_pred             cccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccccCccccccccccCC
Q psy16471         46 NCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHIMDLCIECQANQAST  108 (153)
Q Consensus        46 ~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~~~~CpiC~~~~~~~  108 (153)
                      .|+||+..+.+.-                  .-.|+|.||..|+.+|  ...||+|++.+...
T Consensus         8 ~C~IC~~~~~~p~------------------~lpCgH~fC~~Ci~~~--~~~CP~Cr~~~~~~   50 (56)
T d1bora_           8 RCQQCQAEAKCPK------------------LLPCLHTLCSGCLEAS--GMQCPICQAPWPLG   50 (56)
T ss_dssp             SCSSSCSSCBCCS------------------CSTTSCCSBTTTCSSS--SSSCSSCCSSSSCC
T ss_pred             CCcccCcccCCCE------------------EecCCCHHhHHHHHcC--CCcCcCCCCcccCC
Confidence            7999999886521                  1249999999999987  56799999998554

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=2.4e-05  Score=53.27  Aligned_cols=44  Identities=23%  Similarity=0.491  Sum_probs=34.0

Q ss_pred             cccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc----ccCccccccccccC
Q psy16471         46 NCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH----IMDLCIECQANQAS  107 (153)
Q Consensus        46 ~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~----~~~~CpiC~~~~~~  107 (153)
                      .|+||...+.++                  +.-.|||.|+..|+.+|.    ....||+|+..+..
T Consensus        23 ~CpIC~~~~~~p------------------v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (103)
T d1jm7a_          23 ECPICLELIKEP------------------VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (103)
T ss_dssp             SCSSSCCCCSSC------------------CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCCccCchhCCe------------------EEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCCh
Confidence            599999888652                  112499999999999996    22479999998844

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=97.32  E-value=1.3e-05  Score=50.88  Aligned_cols=48  Identities=27%  Similarity=0.496  Sum_probs=38.8

Q ss_pred             ccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCcccccccccc
Q psy16471         42 IVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQA  106 (153)
Q Consensus        42 ~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~  106 (153)
                      ...|.|+||++.+.+.                 .+...|+|.||..|+.+|. .++.||+|+.++.
T Consensus         3 ~~~d~C~IC~~~~~~~-----------------~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           3 TVAERCPICLEDPSNY-----------------SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCCSSCCSCCCSC-----------------EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCCccCCcCccCC-----------------cEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            3568999999998642                 1234699999999999997 7789999998873

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=2e-05  Score=54.29  Aligned_cols=66  Identities=17%  Similarity=0.314  Sum_probs=45.6

Q ss_pred             ccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeecccccc------cCccccccccccC
Q psy16471         42 IVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNHI------MDLCIECQANQAS  107 (153)
Q Consensus        42 ~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~~------~~~CpiC~~~~~~  107 (153)
                      ..++.|+||+++|.+..............+...+..-.|+|.||..|+.+|+.      ...||+||..|..
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            35688999999987543322222222333455556678999999999999973      2379999988833

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=6.9e-05  Score=50.09  Aligned_cols=45  Identities=27%  Similarity=0.501  Sum_probs=35.8

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccC
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAS  107 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~  107 (153)
                      -+|+||.+.+.+.                  +.-.|+|.|...|+.+|.  ....||+|+.++..
T Consensus        24 l~C~IC~~~~~~p------------------v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          24 ISCQICEHILADP------------------VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             TBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCCccCCcchhcc------------------eecCCCChhhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            3799999888652                  123699999999999996  45679999998743

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=96.74  E-value=0.00011  Score=45.31  Aligned_cols=52  Identities=19%  Similarity=0.255  Sum_probs=37.2

Q ss_pred             ccCccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---ccCcccccccccc
Q psy16471         42 IVVDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---IMDLCIECQANQA  106 (153)
Q Consensus        42 ~~~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---~~~~CpiC~~~~~  106 (153)
                      .....|.||++++.+.-+.           .|  .-..|+|.||..|+.+|.   .+..||+|++.|.
T Consensus         4 ed~~~C~IC~~~~~~~~~~-----------~c--~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFR-----------AC--GCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCC-----------SC--CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeE-----------ec--ccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            4457899999877653211           01  112468999999999996   5568999999984

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00018  Score=46.85  Aligned_cols=46  Identities=22%  Similarity=0.440  Sum_probs=36.5

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCC
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQAST  108 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~  108 (153)
                      ..|+||.+.+.+.                  +...|||.||..|+.+|+  ....||+|+..+...
T Consensus        24 ~~C~IC~~~~~~~------------------~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          24 QLCKICAENDKDV------------------KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT   71 (79)
T ss_dssp             TBCTTTSSSBCCE------------------ECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred             CCCccCCCcCCCe------------------EEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCC
Confidence            5799999887652                  234599999999999997  346799999998554

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.09  E-value=0.00085  Score=42.96  Aligned_cols=66  Identities=15%  Similarity=0.135  Sum_probs=46.6

Q ss_pred             ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCCCCccceEEeeeecc
Q psy16471         45 DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQASTTSEECTVAWGVCNH  122 (153)
Q Consensus        45 d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~~~~~c~~~~~~C~H  122 (153)
                      -.|+||++-|.|.-.                  -.|||+|-..|+.+|.  ....||.|+..+....    .+ .   +|
T Consensus         9 l~CpIc~~~m~dPV~------------------~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~----l~-p---N~   62 (78)
T d1t1ha_           9 FRCPISLELMKDPVI------------------VSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG----LT-P---NY   62 (78)
T ss_dssp             SSCTTTSCCCSSEEE------------------ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC----CE-E---CT
T ss_pred             CCCcCcCchhhCceE------------------ccCCCcchHHHHHHHHHHCCCCCCcccccCCccc----cc-c---hH
Confidence            469999999987421                  2599999999999997  3457999999885431    11 1   12


Q ss_pred             eechHHHHHHHcCCC
Q psy16471        123 AFHFHCISRWLKTRQ  137 (153)
Q Consensus       123 ~FH~~CI~~Wl~~~~  137 (153)
                       .=+.=|++|++.++
T Consensus        63 -~L~~~I~~~~~~~~   76 (78)
T d1t1ha_          63 -VLKSLIALWCESNG   76 (78)
T ss_dssp             -TTHHHHHHHHHHSC
T ss_pred             -HHHHHHHHHHHHhC
Confidence             22456888887664

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.00063  Score=43.87  Aligned_cols=70  Identities=10%  Similarity=0.021  Sum_probs=49.5

Q ss_pred             cccC-ccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc--ccCccccccccccCCCCccceEEe
Q psy16471         41 DIVV-DNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH--IMDLCIECQANQASTTSEECTVAW  117 (153)
Q Consensus        41 d~~~-d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~--~~~~CpiC~~~~~~~~~~~c~~~~  117 (153)
                      ++++ -.|+||.+-|.|+.                  .-.|||+|-..|+.+|.  ....||+|+..+....    .+ .
T Consensus         3 eiP~~l~CpIc~~l~~dPv------------------~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~----l~-p   59 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPC------------------ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ----LI-P   59 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEE------------------ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG----CE-E
T ss_pred             CCCccccCcCcCchhhhhc------------------ccCCcCeecHHHHHHHHhcCCccCCCccccccccc----cc-c
Confidence            3444 46999999998742                  22599999999999997  4567999999874431    11 1


Q ss_pred             eeecceechHHHHHHHcCCC
Q psy16471        118 GVCNHAFHFHCISRWLKTRQ  137 (153)
Q Consensus       118 ~~C~H~FH~~CI~~Wl~~~~  137 (153)
                         ++ -=+.-|++|++.++
T Consensus        60 ---N~-~L~~~I~~~l~~~~   75 (80)
T d2c2la2          60 ---NL-AMKEVIDAFISENG   75 (80)
T ss_dssp             ---CH-HHHHHHHHHHTTCS
T ss_pred             ---HH-HHHHHHHHHHHHCC
Confidence               12 23578999998765

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.0089  Score=35.09  Aligned_cols=45  Identities=24%  Similarity=0.507  Sum_probs=32.1

Q ss_pred             CccccccccccCCCCccceEEeeeecceechHHHHHHHcCCC----CCCCCCC
Q psy16471         96 DLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRWLKTRQ----VCPLDNR  144 (153)
Q Consensus        96 ~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~Wl~~~~----~CP~Cr~  144 (153)
                      ++|.+|...-..+    -.+.-..|...||..|+..-+...+    .||.||.
T Consensus         1 a~C~vC~~~~~~~----~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           1 ARCKVCRKKGEDD----KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCCTTTCCSSCCS----CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCcCcCCCCCCC----CEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            3577887554222    2667788999999999988766532    5999874

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.01  Score=39.62  Aligned_cols=47  Identities=11%  Similarity=-0.134  Sum_probs=37.2

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc-ccCccccccccccC
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH-IMDLCIECQANQAS  107 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~-~~~~CpiC~~~~~~  107 (153)
                      +-.|+||+.-|.|+                 ++.-.|+|+|-..||.+|+ .+..||+|++++..
T Consensus        22 ~f~CPI~~~lm~dP-----------------V~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          22 EFLDPIMSTLMCDP-----------------VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             TTBCTTTCSBCSSE-----------------EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             HhCCcCchhHHHHH-----------------HhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            35799999999874                 2223466799999999997 77789999998854

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.71  E-value=0.065  Score=34.51  Aligned_cols=44  Identities=16%  Similarity=0.312  Sum_probs=29.4

Q ss_pred             CccccccccccccchhhhhcCCCCCCccccceeccccccceeeeeccccc---------ccCcccccc
Q psy16471         44 VDNCAICRNHIMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRNH---------IMDLCIECQ  102 (153)
Q Consensus        44 ~d~C~IC~~~~~d~c~~C~~~~~~~~~~~c~~~~g~C~H~fh~~c~~~w~---------~~~~CpiC~  102 (153)
                      ...|+||.+++...-              .+ .-..|+|.|+..|+..|.         .+-.||.|.
T Consensus         5 ~~~C~IC~~~~~~~~--------------~~-~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           5 SSGCKLCLGEYPVEQ--------------MT-TIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             BCCCSSSCCCCBGGG--------------EE-EETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCcCccCCCcccCCc--------------eE-EECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            467999988875321              11 123599999999998774         122588754

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.63  E-value=0.049  Score=32.98  Aligned_cols=28  Identities=25%  Similarity=0.602  Sum_probs=15.1

Q ss_pred             eeecceechHHHHHHHcCC----CCCCCCCCC
Q psy16471        118 GVCNHAFHFHCISRWLKTR----QVCPLDNRE  145 (153)
Q Consensus       118 ~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~  145 (153)
                      -.|.-.||..||..-+...    =.||.|+..
T Consensus        25 d~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~   56 (61)
T d1mm2a_          25 DTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             SSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             CCCCccCchhhcCCCcCcCCCCcEECCCCcCc
Confidence            3456666666665444331    147777654

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.48  E-value=0.22  Score=31.09  Aligned_cols=41  Identities=27%  Similarity=0.614  Sum_probs=25.3

Q ss_pred             ccccccccccCCCCccceEEe--eee-cceechHHHHHHHcCC----CCCCCCCCC
Q psy16471         97 LCIECQANQASTTSEECTVAW--GVC-NHAFHFHCISRWLKTR----QVCPLDNRE  145 (153)
Q Consensus        97 ~CpiC~~~~~~~~~~~c~~~~--~~C-~H~FH~~CI~~Wl~~~----~~CP~Cr~~  145 (153)
                      .| +|+......     .+..  -.| ...||..||.  |...    =.||.|+.+
T Consensus        18 ~C-iC~~~~~~~-----~i~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~~~   65 (71)
T d1wesa_          18 YC-LCNQVSYGE-----MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD   65 (71)
T ss_dssp             CS-TTCCCCCSS-----EECCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred             EE-EeCCCCCCC-----EEEEECCCCCCcCccCccCC--CCcCCCCcEECcCCccc
Confidence            45 888764322     3333  235 4579999995  4442    259999865

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.76  E-value=0.19  Score=31.03  Aligned_cols=32  Identities=25%  Similarity=0.434  Sum_probs=19.7

Q ss_pred             eEEeeeecceechHHHHHHHcCCC----CCCCCCCC
Q psy16471        114 TVAWGVCNHAFHFHCISRWLKTRQ----VCPLDNRE  145 (153)
Q Consensus       114 ~~~~~~C~H~FH~~CI~~Wl~~~~----~CP~Cr~~  145 (153)
                      .+.--.|...||..|+...+...+    .||.|+..
T Consensus        19 ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~   54 (70)
T d1fp0a1          19 LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   54 (70)
T ss_dssp             CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             EEECCCCChhhccccCCCCcCcCCCCCEECcCCcCc
Confidence            344445777777777776654422    48888654

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.27  E-value=0.44  Score=31.11  Aligned_cols=34  Identities=26%  Similarity=0.591  Sum_probs=22.9

Q ss_pred             ccCccccccccccCCCCccceEEeeeecceechHHHHHH
Q psy16471         94 IMDLCIECQANQASTTSEECTVAWGVCNHAFHFHCISRW  132 (153)
Q Consensus        94 ~~~~CpiC~~~~~~~~~~~c~~~~~~C~H~FH~~CI~~W  132 (153)
                      +...|++| +-|.....--|    -.|+-+||..|+.+=
T Consensus        14 ~D~mC~vC-~v~t~~~l~pC----RvCtRv~H~~CL~r~   47 (89)
T d1wila_          14 NDEMCDVC-EVWTAESLFPC----RVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CSCCCTTT-CCCCSSCCSSC----SSSSSCCCHHHHHHH
T ss_pred             cCcccccc-Ccccccceecc----eeecchhhHHHHHHh
Confidence            34568888 45544432223    349999999999996