Psyllid ID: psy16520

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
MWIENASGPCFKKERLGRYSGSNGQSSHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPPHIR
cccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccEEEccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccHHHHHHHHHHcccccEEEEEEccccccccccccccccHHHHHHHHccccccEEccccHHHHHHHHHcccEEEEEEEEccccccccccccccccHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccc
ccccccccccccEEEEEcccccEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHccccEEEccccHccEEEEccccHHHHHHHHHcccccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccEEEcEccccHHHHHHHHHHHHcccEEEEEEcccEEEcccHHHHHcccccHHccccccccEEEccHHHHHHHHHHccccEEEEEEEEEEccccccccccccccHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccc
mwienasgpcfkkerlgrysgsngqsshlsnvdnetNIRMYKTMVTLNEMDKVMYESQRQGRISFYMtssgeegshvgsaaaldpedLVYAQYRETGVLMWRGFSVEQMIDQLYgnigssdkgkqmpvhygsrqhhfvtissplatqlpQAVGSAYAYKLKKNEKVVIVYFGEGAaivtmatpfqpqrrnsmeemgsrpeglawvfqpleltettighhstsddstayrsksevqeyeinnnpilRFKTLLFKKKLWseeqdeqighhstsddstayrsksevqeyeinnnpilRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVyhempphir
mwienasgpcfkkerlgrysgsngqsshlsnvdnetnIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAIVTmatpfqpqrrNSMEEMGSRPEGLAWVFQPLELTEttighhstsddstayrSKSEVqeyeinnnpilrFKTLLFKKKLWSEEQdeqighhstsddstayRSKSEVqeyeinnnpilrFKTLLFKKKLWSEKQDeqlkkeskqlvlnsirisekklkpswkemfedvyhempphir
MWIENASGPCFKKERLGRYSGSNGQSSHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPIlrfktllfkkklWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPIlrfktllfkkklWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPPHIR
*************************************IRMYKTMVTLNEMDKVMY*******ISFY****************LDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIG********PVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAIVTMAT*******************LAWVFQPLELTETTI********************YEINNNPILRFKTLLFKKKLW****************************YEINNNPILRFKTLLFKKKLW***********************************************
********PCFKKERLGRYSGSNGQSSHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPPHI*
MWIENASGPCFKKERLGRYSGSNGQSSHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTS********GSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAIVTMATPFQP************PEGLAWVFQPLELTETTI**************KSEVQEYEINNNPILRFKTLLFKKKLWS*********************KSEVQEYEINNNPILRFKTLLFKKKLWSE*********SKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPPHIR
*WI**ASGPCFKKERLGRYSGSNGQSSHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMP*HI*
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MWIENASGPCFKKERLGRYSGSNGQSSHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPPHIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query353 2.2.26 [Sep-21-2011]
O45924431 2-oxoisovalerate dehydrog yes N/A 0.838 0.686 0.380 3e-67
P12694445 2-oxoisovalerate dehydrog yes N/A 0.776 0.615 0.389 4e-60
Q8HXY4445 2-oxoisovalerate dehydrog N/A N/A 0.776 0.615 0.389 4e-60
A5A6H9445 2-oxoisovalerate dehydrog yes N/A 0.764 0.606 0.390 5e-60
P11960441 2-oxoisovalerate dehydrog yes N/A 0.776 0.621 0.381 8e-60
P11178455 2-oxoisovalerate dehydrog yes N/A 0.776 0.602 0.389 1e-59
P50136442 2-oxoisovalerate dehydrog yes N/A 0.776 0.619 0.378 2e-59
Q54M22441 2-oxoisovalerate dehydrog yes N/A 0.773 0.619 0.362 2e-54
P09060410 2-oxoisovalerate dehydrog yes N/A 0.898 0.773 0.290 3e-30
Q9I1M2410 2-oxoisovalerate dehydrog yes N/A 0.872 0.751 0.281 5e-29
>sp|O45924|ODBA_CAEEL 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=Y39E4A.3 PE=1 SV=2 Back     alignment and function desciption
 Score =  255 bits (652), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 151/397 (38%), Positives = 211/397 (53%), Gaps = 101/397 (25%)

Query: 9   PCFKKERLGRYSGSNGQSSHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMT 68
           P     R+    G     S   N D +T+++MYKTM  LN MD+++Y+SQRQGRISFYMT
Sbjct: 57  PALPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDRILYDSQRQGRISFYMT 116

Query: 69  SSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPV 128
           S GEEG+HVGSAAAL+P+DL+Y QYRE GVL+WRG+++E  ++Q YGN     KG+QMP+
Sbjct: 117 SFGEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQCYGNADDLGKGRQMPM 176

Query: 129 HYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKK-NEKVVIVYFGEGAA----------- 176
           H+G+++ +FVTISSPL TQLPQAVGSAYA+K +K N ++ +VYFG+GAA           
Sbjct: 177 HFGTKERNFVTISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYFGDGAASEGDAHAAFNF 236

Query: 177 IVTMATPFQPQRRN--------SMEEMGS---------------RPEG------------ 201
             T+  P     RN        + E+ G                R +G            
Sbjct: 237 AATLKCPIIFFCRNNGYAISTPTSEQYGGDGIAGKGPAYGLHTIRVDGNDLLAVYNATKE 296

Query: 202 ---LAWVFQPLELTETT--IGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKL 256
              +A   +P+ +   T  +GHHSTSDDSTAYRS  EVQ +   ++PI RFK  + ++  
Sbjct: 297 ARRVALTNRPVLIEAMTYRLGHHSTSDDSTAYRSSDEVQTWGDKDHPITRFKKYITERGW 356

Query: 257 WSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKK 316
           W+EE++ +                                         W        +K
Sbjct: 357 WNEEKEME-----------------------------------------W--------QK 367

Query: 317 ESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPPHIR 353
           E K+ VL     +EK+ K  + ++FEDVY E+P  +R
Sbjct: 368 EVKKRVLTEFAAAEKRKKAHYHDLFEDVYDELPLRLR 404
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). Required for the production of the monomethyl branched-chain fatty acids (mmBCFAs) isopentadecanoate (C15iso) and isoheptadecanoate (C17iso).
Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 4
>sp|P12694|ODBA_HUMAN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2 Back     alignment and function description
>sp|Q8HXY4|ODBA_MACFA 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1 Back     alignment and function description
>sp|A5A6H9|ODBA_PANTR 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1 Back     alignment and function description
>sp|P11960|ODBA_RAT 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1 Back     alignment and function description
>sp|P11178|ODBA_BOVIN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1 Back     alignment and function description
>sp|P50136|ODBA_MOUSE 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1 Back     alignment and function description
>sp|Q54M22|ODBA_DICDI 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1 Back     alignment and function description
>sp|P09060|ODBA_PSEPU 2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas putida GN=bkdA1 PE=1 SV=2 Back     alignment and function description
>sp|Q9I1M2|ODBA_PSEAE 2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=bkdA1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
183979313431 similar to CG8199 [Papilio xuthus] 0.915 0.749 0.433 6e-77
195153136439 GL22326 [Drosophila persimilis] gi|19411 0.852 0.685 0.466 1e-75
125777311439 GA20891 [Drosophila pseudoobscura pseudo 0.852 0.685 0.466 1e-75
195499464439 GE25960 [Drosophila yakuba] gi|194183060 0.852 0.685 0.466 6e-75
195037833439 GH18279 [Drosophila grimshawi] gi|193894 0.849 0.683 0.459 7e-75
345496762413 PREDICTED: 2-oxoisovalerate dehydrogenas 0.858 0.733 0.440 3e-74
225714562429 2-oxoisovalerate dehydrogenase subunit a 0.855 0.703 0.452 3e-74
194903058439 GG16874 [Drosophila erecta] gi|190652510 0.852 0.685 0.463 4e-74
21355903439 CG8199 [Drosophila melanogaster] gi|7299 0.852 0.685 0.460 5e-74
195572250439 GD18623 [Drosophila simulans] gi|1942000 0.852 0.685 0.460 6e-74
>gi|183979313|dbj|BAG30755.1| similar to CG8199 [Papilio xuthus] Back     alignment and taxonomy information
 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 154/355 (43%), Positives = 219/355 (61%), Gaps = 32/355 (9%)

Query: 18  RYSGSNGQ---SSHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEG 74
           R   SNG+   S    N+D E+ I MY+ M+ LN+MDK++YESQRQGRISFYMT+ GEEG
Sbjct: 65  RVMDSNGRIIDSREEPNIDKESLINMYRNMIQLNQMDKILYESQRQGRISFYMTNYGEEG 124

Query: 75  SHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQ 134
            H+GSAAAL P DLV+AQYRE GVL+ R  +V ++++Q YG+     KG+QMPVHYGS+Q
Sbjct: 125 IHMGSAAALSPRDLVFAQYREVGVLLHRAITVSELVNQCYGDCEDPGKGRQMPVHYGSKQ 184

Query: 135 HHFVTISSPLATQLPQAVGSAYAYK-LKKNEKVVIVYFGEGAA-----------IVTMAT 182
           H+ VTISSPLATQLPQAVG+AYA K +  N++ VI YFGEGAA             T+  
Sbjct: 185 HNIVTISSPLATQLPQAVGAAYALKRMPNNDRCVICYFGEGAASEGDAHAAFNFAATLDC 244

Query: 183 PFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTSDDST----AYRSKSEVQEYE 238
           P     RN+   + S P    +    +       G H+   D T     YR+ +  ++  
Sbjct: 245 PIILMCRNNGYAI-STPSSEQYRGDGIAARGPAFGLHTIRVDGTDTLAVYRAVASARDLA 303

Query: 239 INNNPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKT 298
           ++N P+L  + + ++           +GHHSTSDDS+AYRS  E+Q++  + +P+ + + 
Sbjct: 304 VSNKPVL-IEAMFYR-----------VGHHSTSDDSSAYRSVEEIQKWAKDESPVQKLRL 351

Query: 299 LLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPPHIR 353
            L  K  W  + + Q  KE++  V+ +++ +EKK  P WKEM EDVY++MPP ++
Sbjct: 352 YLEGKGYWDAETETQCVKEARDTVVRAMQDAEKKKLPHWKEMLEDVYYDMPPKLQ 406

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195153136|ref|XP_002017485.1| GL22326 [Drosophila persimilis] gi|194112542|gb|EDW34585.1| GL22326 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|125777311|ref|XP_001359565.1| GA20891 [Drosophila pseudoobscura pseudoobscura] gi|54639312|gb|EAL28714.1| GA20891 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195499464|ref|XP_002096959.1| GE25960 [Drosophila yakuba] gi|194183060|gb|EDW96671.1| GE25960 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|195037833|ref|XP_001990365.1| GH18279 [Drosophila grimshawi] gi|193894561|gb|EDV93427.1| GH18279 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|345496762|ref|XP_001601296.2| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|225714562|gb|ACO13127.1| 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial precursor [Lepeophtheirus salmonis] Back     alignment and taxonomy information
>gi|194903058|ref|XP_001980807.1| GG16874 [Drosophila erecta] gi|190652510|gb|EDV49765.1| GG16874 [Drosophila erecta] Back     alignment and taxonomy information
>gi|21355903|ref|NP_649905.1| CG8199 [Drosophila melanogaster] gi|7299201|gb|AAF54398.1| CG8199 [Drosophila melanogaster] gi|15291395|gb|AAK92966.1| GH19141p [Drosophila melanogaster] gi|220945584|gb|ACL85335.1| CG8199-PA [synthetic construct] Back     alignment and taxonomy information
>gi|195572250|ref|XP_002104109.1| GD18623 [Drosophila simulans] gi|194200036|gb|EDX13612.1| GD18623 [Drosophila simulans] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
WB|WBGene00012713432 Y39E4A.3 [Caenorhabditis elega 0.957 0.782 0.413 4e-67
UNIPROTKB|F1N5F2455 BCKDHA "2-oxoisovalerate dehyd 0.413 0.320 0.636 1.3e-65
UNIPROTKB|P11178455 BCKDHA "2-oxoisovalerate dehyd 0.413 0.320 0.636 1.3e-65
FB|FBgn0037709439 CG8199 [Drosophila melanogaste 0.849 0.683 0.453 2e-65
ZFIN|ZDB-GENE-050522-376446 bckdha "branched chain keto ac 0.410 0.325 0.627 2.6e-65
UNIPROTKB|F5H5P2479 BCKDHA "Uncharacterized protei 0.413 0.304 0.636 3.3e-65
UNIPROTKB|P12694445 BCKDHA "2-oxoisovalerate dehyd 0.413 0.328 0.636 3.3e-65
UNIPROTKB|B4DP47448 BCKDHA "2-oxoisovalerate dehyd 0.413 0.325 0.636 4.2e-65
UNIPROTKB|F1RHA0411 LOC100738911 "Uncharacterized 0.413 0.355 0.630 4.2e-65
UNIPROTKB|I3LNR4447 LOC100738911 "Uncharacterized 0.413 0.326 0.630 4.2e-65
WB|WBGene00012713 Y39E4A.3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 152/368 (41%), Positives = 213/368 (57%)

Query:     3 IENASG-PCFKKERLGRYSGSNGQSSHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQG 61
             I NA   P     R+    G     S   N D +T+++MYKTM  LN MD+++Y+SQRQG
Sbjct:    51 IVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDRILYDSQRQG 110

Query:    62 RISFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSD 121
             RISFYMTS GEEG+HVGSAAAL+P+DL+Y QYRE GVL+WRG+++E  ++Q YGN     
Sbjct:   111 RISFYMTSFGEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQCYGNADDLG 170

Query:   122 KGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKK-NEKVVIVYFGEGAA---- 176
             KG+QMP+H+G+++ +FVTISSPL TQLPQAVGSAYA+K +K N ++ +VYFG+GAA    
Sbjct:   171 KGRQMPMHFGTKERNFVTISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYFGDGAASEGD 230

Query:   177 -------IVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTSDDST--- 226
                      T+  P     RN+   + S P    +    +       G H+   D     
Sbjct:   231 AHAAFNFAATLKCPIIFFCRNNGYAI-STPTSEQYGGDGIAGKGPAYGLHTIRVDGNDLL 289

Query:   227 -AYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYRSKSEVQE 285
               Y +  E +   + N P+              E    ++GHHSTSDDSTAYRS  EVQ 
Sbjct:   290 AVYNATKEARRVALTNRPVLI------------EAMTYRLGHHSTSDDSTAYRSSDEVQT 337

Query:   286 YEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVY 345
             +   ++PI            W+E+++ + +KE K+ VL     +EK+ K  + ++FEDVY
Sbjct:   338 WGDKDHPITRFKKYITERGWWNEEKEMEWQKEVKKRVLTEFAAAEKRKKAHYHDLFEDVY 397

Query:   346 HEMPPHIR 353
              E+P  +R
Sbjct:   398 DELPLRLR 405
GO:0008152 "metabolic process" evidence=IEA
GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA
UNIPROTKB|F1N5F2 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P11178 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0037709 CG8199 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-376 bckdha "branched chain keto acid dehydrogenase E1, alpha polypeptide" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F5H5P2 BCKDHA "Uncharacterized protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P12694 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B4DP47 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RHA0 LOC100738911 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LNR4 LOC100738911 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O45924ODBA_CAEEL1, ., 2, ., 4, ., 40.38030.83850.6867yesN/A
P11960ODBA_RAT1, ., 2, ., 4, ., 40.38130.77620.6213yesN/A
Q54M22ODBA_DICDI1, ., 2, ., 4, ., 40.36260.77330.6190yesN/A
P35485ODPA_ACHLA1, ., 2, ., 4, ., 10.25570.80730.8260yesN/A
P12694ODBA_HUMAN1, ., 2, ., 4, ., 40.38930.77620.6157yesN/A
P11178ODBA_BOVIN1, ., 2, ., 4, ., 40.38930.77620.6021yesN/A
A5A6H9ODBA_PANTR1, ., 2, ., 4, ., 40.39080.76480.6067yesN/A
P50136ODBA_MOUSE1, ., 2, ., 4, ., 40.37860.77620.6199yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.2.40.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
cd02000293 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph 2e-58
COG1071358 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena 5e-42
pfam00676303 pfam00676, E1_dh, Dehydrogenase E1 component 2e-39
TIGR03181341 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E 4e-34
COG1071358 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena 5e-22
TIGR03181341 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E 2e-21
TIGR03182315 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E 2e-16
cd02000293 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph 2e-14
cd02000293 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph 3e-12
pfam00676303 pfam00676, E1_dh, Dehydrogenase E1 component 6e-12
PLN02269362 PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp 9e-11
pfam00676303 pfam00676, E1_dh, Dehydrogenase E1 component 6e-10
TIGR03182315 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E 3e-07
PLN02374433 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl 7e-06
PLN02269362 PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp 4e-05
CHL00149341 CHL00149, odpA, pyruvate dehydrogenase E1 componen 2e-04
TIGR03182315 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E 8e-04
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) Back     alignment and domain information 
 Score =  190 bits (485), Expect = 2e-58
 Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 1/138 (0%)

Query: 40  MYKTMVTLNEMDKVMYESQRQGRIS-FYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGV 98
           +Y+TMV +   D+ + E  RQG+I  FY  S G+E   VG AAAL P D V+  YR+ G 
Sbjct: 1   LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGH 60

Query: 99  LMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAY 158
            + RG  +++M+ +L+G      KG+   +H G ++ +F   +  +  Q+P A G+A A 
Sbjct: 61  ALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALAL 120

Query: 159 KLKKNEKVVIVYFGEGAA 176
           K +  ++V + +FG+GA 
Sbjct: 121 KYRGEDRVAVCFFGDGAT 138

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). Length = 293
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component Back     alignment and domain information
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) Back     alignment and domain information
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) Back     alignment and domain information
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component Back     alignment and domain information
>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha Back     alignment and domain information
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component Back     alignment and domain information
>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring) Back     alignment and domain information
>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha Back     alignment and domain information
>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed Back     alignment and domain information
>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 353
COG1071358 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
KOG1182|consensus432 100.0
PLN02269362 Pyruvate dehydrogenase E1 component subunit alpha 100.0
KOG0225|consensus394 100.0
CHL00149341 odpA pyruvate dehydrogenase E1 component alpha sub 100.0
TIGR03182315 PDH_E1_alph_y pyruvate dehydrogenase E1 component, 100.0
PLN02374433 pyruvate dehydrogenase (acetyl-transferring) 100.0
TIGR03181341 PDH_E1_alph_x pyruvate dehydrogenase E1 component, 100.0
PF00676300 E1_dh: Dehydrogenase E1 component; InterPro: IPR00 100.0
cd02000293 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) 100.0
PRK09404 924 sucA 2-oxoglutarate dehydrogenase E1 component; Re 100.0
COG1071358 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
TIGR00239 929 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon 99.98
KOG0225|consensus394 99.97
cd02016265 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami 99.94
PLN02269362 Pyruvate dehydrogenase E1 component subunit alpha 99.94
KOG1182|consensus432 99.93
CHL00149341 odpA pyruvate dehydrogenase E1 component alpha sub 99.92
PF00676300 E1_dh: Dehydrogenase E1 component; InterPro: IPR00 99.91
TIGR03182315 PDH_E1_alph_y pyruvate dehydrogenase E1 component, 99.91
PLN02374433 pyruvate dehydrogenase (acetyl-transferring) 99.91
TIGR03181341 PDH_E1_alph_x pyruvate dehydrogenase E1 component, 99.88
cd02000293 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) 99.87
PRK12270 1228 kgd alpha-ketoglutarate decarboxylase; Reviewed 99.68
PRK09404 924 sucA 2-oxoglutarate dehydrogenase E1 component; Re 99.66
COG0567 906 SucA 2-oxoglutarate dehydrogenase complex, dehydro 99.5
KOG0451|consensus 913 99.5
KOG0450|consensus 1017 99.48
PRK12315 581 1-deoxy-D-xylulose-5-phosphate synthase; Provision 99.36
TIGR00239 929 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon 99.35
cd02016265 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami 99.0
PRK11864300 2-ketoisovalerate ferredoxin oxidoreductase subuni 98.56
cd02011227 TPP_PK Thiamine pyrophosphate (TPP) family, Phosph 98.55
PRK12270 1228 kgd alpha-ketoglutarate decarboxylase; Reviewed 97.49
TIGR00232 653 tktlase_bact transketolase, bacterial and yeast. T 97.31
PRK12754 663 transketolase; Reviewed 96.96
PTZ00089 661 transketolase; Provisional 96.92
PRK12315 581 1-deoxy-D-xylulose-5-phosphate synthase; Provision 96.61
cd02007195 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s 96.33
PRK12753 663 transketolase; Reviewed 96.26
PRK05899 624 transketolase; Reviewed 96.08
cd02012255 TPP_TK Thiamine pyrophosphate (TPP) family, Transk 95.51
PLN02790 654 transketolase 95.41
PRK05261 785 putative phosphoketolase; Provisional 94.28
COG3959243 Transketolase, N-terminal subunit [Carbohydrate tr 92.87
COG0567 906 SucA 2-oxoglutarate dehydrogenase complex, dehydro 91.02
PRK05444 580 1-deoxy-D-xylulose-5-phosphate synthase; Provision 88.6
PF00456332 Transketolase_N: Transketolase, thiamine diphospha 88.13
TIGR00204 617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 87.78
TIGR00232 653 tktlase_bact transketolase, bacterial and yeast. T 87.49
PTZ00089 661 transketolase; Provisional 85.2
cd02007195 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s 84.01
PLN02790 654 transketolase 82.2
PRK12754 663 transketolase; Reviewed 81.32
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-69  Score=517.98  Aligned_cols=298  Identities=32%  Similarity=0.532  Sum_probs=277.1

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcc-ccccCCCchhHHHHHHhcCCCC-CeeEecCcchHHHHHcCCCHHH
Q psy16520         31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRIS-FYMTSSGEEGSHVGSAAALDPE-DLVYAQYRETGVLMWRGFSVEQ  108 (353)
Q Consensus        31 ~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~g-~~h~~~G~Ea~~vg~~~al~~~-D~v~~~yR~~g~~la~G~~~~~  108 (353)
                      .+++++++.+||.|+++|.||+++..++++||++ |+|++.||||++||++++|+++ ||++++||+||++|++|+|+.+
T Consensus        23 ~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~~~~  102 (358)
T COG1071          23 ALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLKE  102 (358)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecCCCHHH
Confidence            6789999999999999999999999999999996 9999999999999999999966 9999999999999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCc-EEEEEeecchhh----------
Q psy16520        109 MIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEK-VVIVYFGEGAAI----------  177 (353)
Q Consensus       109 ~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~-v~~v~~Gdg~~~----------  177 (353)
                      ++++++|+.+|+|+|+++|+||+.+++|+++++++||+|+|+|+|+||+.|+.+.++ |++|++|||+++          
T Consensus       103 ~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~  182 (358)
T COG1071         103 IMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNF  182 (358)
T ss_pred             HHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988555 999999999999          


Q ss_pred             hh------hccccccccccccc------ccCcccCCCcccccccccccccccCCCcc----ChhHhhcCHHHHHHHHHcC
Q psy16520        178 VT------MATPFQPQRRNSME------EMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYRSKSEVQEYEINN  241 (353)
Q Consensus       178 a~------is~~~~~q~~~~~~------~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr~~~ea~~~~r~~  241 (353)
                      |+      |+++.|||++.+..      ....+.|+.+|            |+++..    |+.+||.+.++|++|+|++
T Consensus       183 A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~ay------------gipgv~VDG~D~~avy~~~~~A~e~AR~g  250 (358)
T COG1071         183 AAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAY------------GIPGVRVDGNDVLAVYEAAKEAVERARAG  250 (358)
T ss_pred             HHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhcc------------CCCeEEECCcCHHHHHHHHHHHHHHHHcC
Confidence            32      44444444443220      14566799999            999987    9999999999999999999


Q ss_pred             -CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy16520        242 -NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQ  320 (353)
Q Consensus       242 -~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g~~t~~e~~~~~~e~~~  320 (353)
                       +|+|+            |+.|||+.|||++||+..||+++|.++|.++| |+.+++++|++.|+||+++++++++++++
T Consensus       251 ~GPtLI------------E~~tYR~~~HS~sDd~~~YRskeE~~~~~~~D-Pi~r~~~~L~~~g~~see~~~~i~~e~~~  317 (358)
T COG1071         251 EGPTLI------------EAVTYRYGGHSTSDDPSKYRSKEEVEEWKKRD-PIVRLRKYLIEAGILSEEELEAIEAEAKA  317 (358)
T ss_pred             CCCEEE------------EEEEeecCCCCCCCCccccCCHHHHHHHhccC-hHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence             99999            99999999999999999999999999999995 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCHhHHhhccccCCCCCCC
Q psy16520        321 LVLNSIRISEKKLKPSWKEMFEDVYHEMPPHIR  353 (353)
Q Consensus       321 ~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~  353 (353)
                      +|++|+++|+++|+|+++++|++||++.|++|+
T Consensus       318 ~V~ea~e~a~~~p~P~~~~~~~~Vy~~~~~~l~  350 (358)
T COG1071         318 EVDEAVEFAEASPYPDVSELFEDVYAEGPPHLE  350 (358)
T ss_pred             HHHHHHHHHHhCCCCChhHhhhcccccCChhHH
Confidence            999999999999999999999999999999873

>KOG1182|consensus Back     alignment and domain information
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha Back     alignment and domain information
>KOG0225|consensus Back     alignment and domain information
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed Back     alignment and domain information
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>PLN02374 pyruvate dehydrogenase (acetyl-transferring) Back     alignment and domain information
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex Back     alignment and domain information
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) Back     alignment and domain information
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] Back     alignment and domain information
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>KOG0225|consensus Back     alignment and domain information
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) Back     alignment and domain information
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha Back     alignment and domain information
>KOG1182|consensus Back     alignment and domain information
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed Back     alignment and domain information
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex Back     alignment and domain information
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>PLN02374 pyruvate dehydrogenase (acetyl-transferring) Back     alignment and domain information
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) Back     alignment and domain information
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>KOG0451|consensus Back     alignment and domain information
>KOG0450|consensus Back     alignment and domain information
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) Back     alignment and domain information
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O Back     alignment and domain information
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>PRK12754 transketolase; Reviewed Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis Back     alignment and domain information
>PRK12753 transketolase; Reviewed Back     alignment and domain information
>PRK05899 transketolase; Reviewed Back     alignment and domain information
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates Back     alignment and domain information
>PLN02790 transketolase Back     alignment and domain information
>PRK05261 putative phosphoketolase; Provisional Back     alignment and domain information
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis Back     alignment and domain information
>PLN02790 transketolase Back     alignment and domain information
>PRK12754 transketolase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
1dtw_A400 Human Branched-Chain Alpha-Keto Acid Dehydrogenase 1e-58
2bff_A400 Reactivity Modulation Of Human Branched-Chain Alpha 2e-58
1x7y_A400 Crystal Structure Of The Human Mitochondrial Branch 4e-58
1x7z_A400 Crystal Structure Of The Human Mitochondrial Branch 4e-58
1x7w_A400 Crystal Structure Of The Human Mitochondrial Branch 5e-58
1x80_A400 Crystal Structure Of The Human Mitochondrial Branch 5e-58
2j9f_A400 Human Branched-Chain Alpha-Ketoacid Dehydrogenase- 5e-58
1x7x_A400 Crystal Structure Of The Human Mitochondrial Branch 6e-58
1v11_A400 Crosstalk Between Cofactor Binding And The Phosphor 1e-57
1olu_A400 Roles Of His291-Alpha And His146-Beta' In The Reduc 2e-57
1v16_A400 Crosstalk Between Cofactor Binding And The Phosphor 4e-57
2bfc_A400 Reactivity Modulation Of Human Branched-Chain Alpha 8e-57
2bfe_A400 Reactivity Modulation Of Human Branched-Chain Alpha 2e-56
2bfb_A400 Reactivity Modulation Of Human Branched-Chain Alpha 2e-56
1v1m_A400 Crosstalk Between Cofactor Binding And The Phosphor 3e-56
2bfd_A400 Reactivity Modulation Of Human Branched-Chain Alpha 4e-56
2bp7_A410 New Crystal Form Of The Pseudomonas Putida Branched 1e-22
2bp7_A410 New Crystal Form Of The Pseudomonas Putida Branched 5e-06
1um9_A367 Branched-chain 2-oxo Acid Dehydrogenase (e1) From T 3e-20
1qs0_A407 Crystal Structure Of Pseudomonas Putida 2-Oxoisoval 5e-18
1qs0_A407 Crystal Structure Of Pseudomonas Putida 2-Oxoisoval 2e-04
3dva_A369 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 7e-11
3exf_A382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 2e-10
3exe_A382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 3e-10
3exh_C382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 6e-10
3exi_A382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 8e-10
2ozl_A365 Human Pyruvate Dehydrogenase S264e Variant Length = 1e-09
1w88_A368 The Crystal Structure Of Pyruvate Dehydrogenase E1( 1e-09
1w85_A368 The Crystal Structure Of Pyruvate Dehydrogenase E1 1e-09
3duf_A369 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 2e-09
1ni4_A365 Human Pyruvate Dehydrogenase Length = 365 1e-08
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 400 Back     alignment and structure 
Iteration: 1

 Score =  223 bits (568), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 190/375 (50%), Gaps = 101/375 (26%)
Query: 31  NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
           ++  E  +++YK+M  LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD  DLV+
Sbjct: 51  HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVF 110
Query: 91  AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
            QYRE GVLM+R + +E  + Q YGNI    KG+QMPVHYG ++ HFVTISSPLATQ+PQ
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS-- 197
           AVG+AYA K     +VVI YFGEGAA             T+  P     RN+   + +  
Sbjct: 171 AVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPT 230
Query: 198 ----RPEGLAW----------------VF-----------------QPLELTETT--IGH 218
               R +G+A                 VF                 QP  +   T  IGH
Sbjct: 231 SEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGH 290
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYR 278
           HSTSDDS+AYRS  EV  ++  ++PI            W EEQ++               
Sbjct: 291 HSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK--------------- 335
Query: 279 SKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWK 338
                                      W        +K+S++ V+ +   +E+K KP+  
Sbjct: 336 --------------------------AW--------RKQSRRKVMEAFEQAERKPKPNPN 361
Query: 339 EMFEDVYHEMPPHIR 353
            +F DVY EMP  +R
Sbjct: 362 LLFSDVYQEMPAQLR 376
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 400 Back     alignment and structure
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 Back     alignment and structure
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 Back     alignment and structure
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 Back     alignment and structure
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 410 Back     alignment and structure
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 410 Back     alignment and structure
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 367 Back     alignment and structure
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 407 Back     alignment and structure
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 407 Back     alignment and structure
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 Back     alignment and structure
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 Back     alignment and structure
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 Back     alignment and structure
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 Back     alignment and structure
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382 Back     alignment and structure
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365 Back     alignment and structure
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 Back     alignment and structure
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 Back     alignment and structure
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 Back     alignment and structure
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
2bfd_A400 2-oxoisovalerate dehydrogenase alpha subunit; oxid 7e-71
2bfd_A400 2-oxoisovalerate dehydrogenase alpha subunit; oxid 3e-31
1qs0_A407 2-oxoisovalerate dehydrogenase alpha-subunit; hete 3e-69
1qs0_A407 2-oxoisovalerate dehydrogenase alpha-subunit; hete 3e-27
1umd_A367 E1-alpha, 2-OXO acid dehydrogenase alpha subunit; 1e-67
1umd_A367 E1-alpha, 2-OXO acid dehydrogenase alpha subunit; 4e-29
1w85_A368 Pyruvate dehydrogenase E1 component, alpha subunit 5e-62
1w85_A368 Pyruvate dehydrogenase E1 component, alpha subunit 2e-27
2ozl_A365 PDHE1-A type I, pyruvate dehydrogenase E1 componen 3e-20
2ozl_A365 PDHE1-A type I, pyruvate dehydrogenase E1 componen 6e-14
2ozl_A365 PDHE1-A type I, pyruvate dehydrogenase E1 componen 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 3e-05
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400 Back     alignment and structure
 Score =  225 bits (575), Expect = 7e-71
 Identities = 92/146 (63%), Positives = 114/146 (78%)

Query: 31  NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
           ++  E  +++YK+M  LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD  DLV+
Sbjct: 51  HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVF 110

Query: 91  AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
            Q RE GVLM+R + +E  + Q YGNI    KG+QMPVHYG ++ HFVTISSPLATQ+PQ
Sbjct: 111 GQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170

Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAA 176
           AVG+AYA K     +VVI YFGEGAA
Sbjct: 171 AVGAAYAAKRANANRVVICYFGEGAA 196
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400 Back     alignment and structure
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407 Back     alignment and structure
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407 Back     alignment and structure
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367 Back     alignment and structure
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367 Back     alignment and structure
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368 Back     alignment and structure
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368 Back     alignment and structure
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365 Back     alignment and structure
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365 Back     alignment and structure
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
2ozl_A365 PDHE1-A type I, pyruvate dehydrogenase E1 componen 100.0
1qs0_A407 2-oxoisovalerate dehydrogenase alpha-subunit; hete 100.0
2bfd_A400 2-oxoisovalerate dehydrogenase alpha subunit; oxid 100.0
1w85_A368 Pyruvate dehydrogenase E1 component, alpha subunit 100.0
1umd_A367 E1-alpha, 2-OXO acid dehydrogenase alpha subunit; 100.0
2yic_A 868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 100.0
2xt6_A 1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 100.0
2jgd_A 933 2-oxoglutarate dehydrogenase E1 component; flavopr 100.0
1w85_A368 Pyruvate dehydrogenase E1 component, alpha subunit 99.84
2ozl_A365 PDHE1-A type I, pyruvate dehydrogenase E1 componen 99.83
2bfd_A400 2-oxoisovalerate dehydrogenase alpha subunit; oxid 99.8
1qs0_A407 2-oxoisovalerate dehydrogenase alpha-subunit; hete 99.8
1umd_A367 E1-alpha, 2-OXO acid dehydrogenase alpha subunit; 99.71
2xt6_A 1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 99.37
2yic_A 868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 99.37
2jgd_A 933 2-oxoglutarate dehydrogenase E1 component; flavopr 99.19
2o1s_A 621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 98.6
2o1x_A 629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 98.32
1gpu_A 680 Transketolase; transferase(ketone residues); HET: 98.22
4feg_A603 Pyruvate oxidase; carbanion, structure activity re 98.2
2e6k_A 651 Transketolase; structural genomics, NPPSFA, nation 97.97
1r9j_A 673 Transketolase; domains, EACH of the alpha/beta typ 97.81
2r8o_A 669 Transketolase 1, TK 1; reaction intermediate, calc 97.61
3rim_A 700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 97.35
1itz_A 675 Transketolase; calvin cycle, cofactor, thiamine py 96.91
3uk1_A 711 Transketolase; structural genomics, seattle struct 96.68
4feg_A603 Pyruvate oxidase; carbanion, structure activity re 96.62
3mos_A 616 Transketolase, TK; thiamin diphosphate TPP THDP en 96.52
3kom_A 663 Transketolase; rossmann fold, csgid, transferase, 96.51
2qtc_A 886 Pyruvate dehydrogenase E1 component; thiamin dipho 96.22
3m49_A 690 Transketolase; alpha-beta-alpha sandwich, csgid, t 95.75
3l84_A 632 Transketolase; TKT, structural genomics, center fo 95.72
1gpu_A 680 Transketolase; transferase(ketone residues); HET: 93.08
2e6k_A 651 Transketolase; structural genomics, NPPSFA, nation 89.45
2r8o_A 669 Transketolase 1, TK 1; reaction intermediate, calc 87.23
3rim_A 700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 84.14
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Back     alignment and structure
Probab=100.00  E-value=2.2e-53  Score=414.85  Aligned_cols=299  Identities=22%  Similarity=0.338  Sum_probs=265.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCc-cccccCCCchhHHHHHHhcCCCCCeeEecCcchHHHHHcCCCHHH
Q psy16520         30 SNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRI-SFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQ  108 (353)
Q Consensus        30 ~~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~-g~~h~~~G~Ea~~vg~~~al~~~D~v~~~yR~~g~~la~G~~~~~  108 (353)
                      +.+++++++.+||.|+++|.||+++..++++|++ ||+|++.|||++++|+..+|+++|+|+++||+|++++++|.++..
T Consensus        29 ~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~~~~  108 (365)
T 2ozl_A           29 TVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVRE  108 (365)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCCHHH
Confidence            3678999999999999999999999999999999 899999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh----------h
Q psy16520        109 MIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI----------V  178 (353)
Q Consensus       109 ~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~----------a  178 (353)
                      ++++++|+.+|+++|+++++|+.+  .|+++.++++|.++|.|+|+|+|.++.+.+.+++|++|||+++          |
T Consensus       109 i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A  186 (365)
T 2ozl_A          109 ILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMA  186 (365)
T ss_dssp             HHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHH
Confidence            999999999999999999999966  4899999999999999999999998888889999999999988          2


Q ss_pred             h------hcccccccccccccccCcccCCCcccccccccccccccCCCcc----ChhHhhcCHHHHHHHHHcC-CCeehh
Q psy16520        179 T------MATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYRSKSEVQEYEINN-NPILRF  247 (353)
Q Consensus       179 ~------is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr~~~ea~~~~r~~-~Pv~~~  247 (353)
                      +      |+++.||+++.++.. .+..+.+.|    ..   .-+|+++..    |+.+++.+.++|.+++|++ +|+++ 
T Consensus       187 ~~~~lpvi~vv~NN~~g~~t~~-~~~~~~~~~----~~---ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lI-  257 (365)
T 2ozl_A          187 ALWKLPCIFICENNRYGMGTSV-ERAAASTDY----YK---RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILM-  257 (365)
T ss_dssp             HHTTCCEEEEEEECSEETTEEH-HHHCSCCCG----GG---TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEE-
T ss_pred             HHHCcCEEEEEECCCcccCCCc-ccccCCCCH----HH---HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEE-
Confidence            1      777788888764410 011111222    00   011555443    8999999999999999887 99999 


Q ss_pred             HHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy16520        248 KTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIR  327 (353)
Q Consensus       248 ~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~  327 (353)
                                 |+.|||..|||++|++..||+++|+++|+++.||+.+|+++|+++|++|++++++++++++++|+++++
T Consensus       258 -----------e~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~  326 (365)
T 2ozl_A          258 -----------ELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQ  326 (365)
T ss_dssp             -----------EEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------EEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                       999999999999998888999999999986325999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCHhHHhhccccCCCC
Q psy16520        328 ISEKKLKPSWKEMFEDVYHEMPP  350 (353)
Q Consensus       328 ~a~~~~~p~~~~~~~~v~~~~~~  350 (353)
                      +|+++|.|+++++|+|||+++|+
T Consensus       327 ~a~~~p~p~~~~~~~~vy~~~~~  349 (365)
T 2ozl_A          327 FATADPEPPLEELGYHIYSSDPP  349 (365)
T ss_dssp             HHHHSCCCCGGGTTCSSSSSCCC
T ss_pred             HHHhCCCCCHHHHHhhhcCCCCh
Confidence            99999999999999999998766
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Back     alignment and structure
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Back     alignment and structure
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Back     alignment and structure
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Back     alignment and structure
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Back     alignment and structure
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Back     alignment and structure
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Back     alignment and structure
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Back     alignment and structure
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Back     alignment and structure
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Back     alignment and structure
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 353
d2bfda1395 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid 2e-54
d1qs0a_407 c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B 6e-53
d1w85a_365 c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd 1e-48
d2ozla1361 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de 1e-45
d1umda_362 c.36.1.11 (A:) Branched-chain alpha-keto acid dehy 5e-44
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  181 bits (460), Expect = 2e-54
 Identities = 133/340 (39%), Positives = 188/340 (55%), Gaps = 23/340 (6%)

Query: 27  SHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPE 86
           S   ++  E  +++YK+M  LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD  
Sbjct: 42  SEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNT 101

Query: 87  DLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLAT 146
           DLV+ Q RE GVLM+R + +E  + Q YGNI    KG+QMPVHYG ++ HFVTISSPLAT
Sbjct: 102 DLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLAT 161

Query: 147 QLPQAVGSAYAYKLKKNEKVVIVYFGEG-------------AAIVTMATPFQPQRRNSME 193
           Q+PQAVG+AYA K     +VVI YFGEG             AA +     F  +      
Sbjct: 162 QIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAI 221

Query: 194 EMGSRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFK 253
              +  +               +      +D  A  + ++                    
Sbjct: 222 STPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVA----------EN 271

Query: 254 KKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQ 313
           +    E    +IGH STSDDS+A+RS  EV  ++  ++PI R +  L  +  W E+Q++ 
Sbjct: 272 QPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKA 331

Query: 314 LKKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPPHIR 353
            +K+S++ V+ +   +E+K KP+   +F DVY EMP  +R
Sbjct: 332 WRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLR 371
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407 Back     information, alignment and structure
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365 Back     information, alignment and structure
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361 Back     information, alignment and structure
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
d2bfda1395 Branched-chain alpha-keto acid dehydrogenase, PP m 100.0
d1qs0a_407 2-oxoisovalerate dehydrogenase (E1B), PP module {P 100.0
d1umda_362 Branched-chain alpha-keto acid dehydrogenase, PP m 100.0
d2ozla1361 E1-beta subunit of pyruvate dehydrogenase (PP modu 100.0
d1w85a_365 Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st 100.0
d1umda_362 Branched-chain alpha-keto acid dehydrogenase, PP m 99.96
d2bfda1395 Branched-chain alpha-keto acid dehydrogenase, PP m 99.96
d1qs0a_407 2-oxoisovalerate dehydrogenase (E1B), PP module {P 99.95
d1w85a_365 Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st 99.95
d2ozla1361 E1-beta subunit of pyruvate dehydrogenase (PP modu 99.93
d2djia3229 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 89.66
d1r9ja2336 Transketolase (TK), PP module {Leishmania mexicana 82.88
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-65  Score=501.55  Aligned_cols=307  Identities=47%  Similarity=0.777  Sum_probs=266.0

Q ss_pred             ccCCCCC---CccCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCccccccCCCchhHHHHHHhcCCCCCeeEecCcc
Q psy16520         19 YSGSNGQ---SSHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYRE   95 (353)
Q Consensus        19 ~~~~~Gq---ea~~~~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~g~~h~~~G~Ea~~vg~~~al~~~D~v~~~yR~   95 (353)
                      +++.+|.   +...+.|++|+++.+||.|+++|.||+++.+++++|++++++++.||||++||++.+|+++||++++||+
T Consensus        31 ~ld~~g~~~~~~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~i~~~~~~~GqEA~~vg~~~al~~~D~~~~~yR~  110 (395)
T d2bfda1          31 VMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQARE  110 (395)
T ss_dssp             SBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCC
T ss_pred             EECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHHHcCCCCeeccccch
Confidence            5666665   3344589999999999999999999999999999999988888899999999999999999999999999


Q ss_pred             hHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecch
Q psy16520         96 TGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGA  175 (353)
Q Consensus        96 ~g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~  175 (353)
                      |+++|++|++++.+++++||+.+|+|+|+++|||+.+++.|+++.+++||+|+|+|+|+|++.++.+.+.|++|++|||+
T Consensus       111 h~~~la~G~~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa  190 (395)
T d2bfda1         111 AGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGA  190 (395)
T ss_dssp             HHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTG
T ss_pred             hHhhhhhhCCHHHHHHHHhhcccCccccccccccccccccccccccccccccccHHHHHHHHhhhcCcccccccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hh----------hh----------------hcccccccccccccccCcccCCCcccccccccccccccCCCcc----Chh
Q psy16520        176 AI----------VT----------------MATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTS----DDS  225 (353)
Q Consensus       176 ~~----------a~----------------is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~  225 (353)
                      ++          |+                ||||.++|++.    ..++.++.+|            |+++..    |+.
T Consensus       191 ~~eG~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~~~----~~i~~ra~~~------------gi~~~~vDG~Dv~  254 (395)
T d2bfda1         191 ASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRG----DGIAARGPGY------------GIMSIRVDGNDVF  254 (395)
T ss_dssp             GGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSS----STTGGGTGGG------------TCEEEEEETTCHH
T ss_pred             ccchhHHHHHHHHhhcCCceEEEEEecccccccccchhhcc----hhHHHhhhcc------------ccceeEEecCcHH
Confidence            99          22                56665555554    6688888988            999876    999


Q ss_pred             HhhcCHHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcC
Q psy16520        226 TAYRSKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKK  304 (353)
Q Consensus       226 ~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g  304 (353)
                      +||.+.++|++++|++ +|+++            |+.|||+.+|+++||+..||+++|++.|+++|||+.+++++|+++|
T Consensus       255 aV~~a~~~A~~~~R~g~gP~lI------------E~~TyR~~~Hs~~DD~~~YR~~~Ei~~w~k~DdPi~~~~~~Li~~g  322 (395)
T d2bfda1         255 AVYNATKEARRRAVAENQPFLI------------EAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQG  322 (395)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEE------------EEECCCCC--CC-------------------CCHHHHHHHHHTTTT
T ss_pred             HHHHHHHHhhhhhhccCCceEE------------EEeeecCCCCCCcCCcccccCHHHHHHHHhcCCHHHHHHHHHHHCC
Confidence            9999999999999988 99999            9999999999999999999999999999999779999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHhhccccCCCCCCC
Q psy16520        305 LWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPPHIR  353 (353)
Q Consensus       305 ~~t~~e~~~~~~e~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~  353 (353)
                      ++|++++++|+++++++|++|+++|+++|+|+++++|+|||+++||+|+
T Consensus       323 ~~s~ee~~~i~~e~~~eV~~A~~~A~~~p~P~~~~l~~~VYae~p~~l~  371 (395)
T d2bfda1         323 WWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLR  371 (395)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccCCCHHHH
Confidence            9999999999999999999999999999999999999999999999863
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure