Psyllid ID: psy16527

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560--
Protein Sequence
MELKPQSPIKVNLNRSSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCASFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPGMSNLRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPEKPSLPSPQLAMKSPGCPESHVVHMEHPPHLCAAPAPSYVDPSWDEDMMSNTKSIDLKGVRNLHIFFNEENRICVQKDEKQSRLVDYLETGEPSNPETTTSNVISRPEHDNINGGGTTWHIQIEKTSAGPDITKAIDNRTFEEVTQAELDARPYRNTNEDYKVTCNNDDSESPVLNLQIKKAEIVIKFGGSPNENVANNTNDTAAVENDRGDNAVNININPEEAKAGSSKLTELPNPDLKKKTNESQADDEGSEDSLSGCGSPTCRLLPEPTEYNAATTSVRPKSYPFDKRQSRNSGTWTPNVEKENPTGSDQDMGSQSPLLAQTNNSETNKTN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEHHcccccccccccccccHHHHHHHHHccccccccccccccccccccccccHHHHccHHHHHHHHcccccccccccccccHHHHHcccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEcccccccccccccccccccccccEEEEEEcccccccccccccccccccccEEEHcHHHHHHHHHccccccHHHHEEEEEccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccEEEEEEEcccccEEEEccccHHHHHHccccccccccccccccEEEccccccccccccEEEEEEccccccccHHHHHccccHHHHccHHcccccccccccccEEEEccccccccHHEEEEEEEEEEEEEccccccccccccccEEEEEcccccccccccccHHEEEccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHEccccccccccc
Coil and Loop (DISEMBL)
melkpqspikvnlnrsspdrcssqtsslssngfdicrichcevtpeaspdvspaycfwfspltsirhacssgsshptsdvancasfssscrqkpnlsvrSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKaynseggpgmsnlrpirrslthplglfaptpkvsgviyvqnapekpslpspqlamkspgcpeshvvhmehpphlcaapapsyvdpswdedmmsntksidlkgvrnlhiffneenricvqkdekqSRLVDyletgepsnpetttsnvisrpehdningggtTWHIQIEktsagpditkaidnrtfEEVTQAEldarpyrntnedykvtcnnddsespvlnlqIKKAEIVIKfggspnenvanntndtaavendrgdnavnininpeeakagsskltelpnpdlkkktnesqaddegsedslsgcgsptcrllpepteynaattsvrpksypfdkrqsrnsgtwtpnvekenptgsdqdmgsqspllaqtnnsetnktn
Flexible Loop (DISEMBL)
melkpqspikvnlnrsspdrcssqtsslssngFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCASFssscrqkpnlsVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPGMSNLRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPEKPSLPSPQLAMKSPGCPESHVVHMEHPPHLCAAPAPSYVDPSWDEDMMSNTKSIDLKGVRNLHIFFneenricvqkdekQSRLVDyletgepsnpetttsnvisrpehDNINGGGTTWHIQIEKTSAGPDITKAIDNRTFEEvtqaeldarpyrntnEDYKVTcnnddsespvlNLQIKKAEIVIKfggspnenvannTNDTAAVENDRGDNAVNININpeeakagsskltelpnpdlkkktnesqaddegsedslsgcgSPTCRLLpepteynaattsvrpksypfdkrqsrnsgtwtpnvekenptgsdqdmgsqspllaqtnnsetnktn
Low Complexity Region (SEG)
MELKPQSPIKVNLNRSSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCASFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLivvvigftggvvfMYIQCKAYLHICQRWKAYNSEGGPGMSNLRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPEKPSLPSPQLAMKSPGCPESHVVHMEHPPHLCAAPAPSYVDPSWDEDMMSNTKSIDLKGVRNLHIFFNEENRICVQKDEKQSRLVDYLETGEPSNPETTTSNVISRPEHDNINGGGTTWHIQIEKTSAGPDITKAIDNRTFEEVTQAELDARPYRNTNEDYKVTCNNDDSESPVLNLQIKKAEIVIKFGGSPnenvanntndtaavendRGDNAVNININPEEAKAGSSKLTELPNPDLKKKTNESQADDEGSEDSLSGCGSPTCRLLPEPTEYNAATTSVRPKSYPFDKRQSRNSGTWTPNVEKENPTGSDQDMGSQSPLLAQTNNSETNKTN
Disordered region (IsUnstruct)
*******************************GFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHAC****************************VRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNS***********IRRSLTHPLGLFAPTPKVSGVIYV*********************************************************SIDLKGVRNLHIFFNEENRICVQ**************************************GGTTWHIQIEK******ITKAI**************************V**********VLNLQIKKAEIVIKFG*************************************************************************************************************************************************
Disordered Region (DISOPRED)
***********************************CRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCASFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPG******************************************************************AAPAPSYVD******************VRNLHIFFNEENRI**********************************************************************************NTN********************IK***I******************************************************************************************************************************************************
Disordered Region (DISEMBL)
********IKVNL****************SNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRH*************************KPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPGMSNLRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPEKPSLPSPQLAMKSPGCPESHVVHMEHPPHLCAAPAPSYVDPSWDEDMMSNTKSIDLKGVRNLHIFFNEENRICVQKDEKQSRLVDYLET************VISRPEHDNINGGGTTWHIQIEKTSAGPDITKAIDNRTFEEVTQAELDARPYRNTNEDYKVTCNNDDSESPVLNLQIKKAEIVIKFGGSPNENVANNTNDTAAVENDRGDNAVNININPEEAKAGSSKLTELPNPDL**********************SPTCRLLPEPTEYNAATTSVRPKSYPFDKRQSRNSGTWTPNVE*************QSPLLAQ**********
Disordered Region (DISPRO)
********************************FDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCASFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPGMS*******************PKVSGVIYVQNAPEKPS*****************************APAPSYVDPSWDEDMMSNTKSIDLKGVRNLHIFFNEENRICVQKDEKQSRLVDYLETGEPSNPETTTSNVISRPEHDNINGGGTTWHIQIEKTSAGPDITKAIDNRTFEEVTQAELDARPYRNTNEDYKVTCNNDDSESPVLNLQIKKAEIVIKFGGSPNENVANNTNDTAAVENDRGDNAVNININPEEAKAGSSKLTELPNPDL************************TCRLLPEPTEYNAATT*VRPKS*************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELKPQSPIKVNLNRSSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCASFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPGMSNLRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPEKPSLPSPQLAMKSPGCPESHVVHMEHPPHLCAAPAPSYVDPSWDEDMMSNTKSIDLKGVRNLHIFFNEENRICVQKDEKQSRLVDYLETGEPSNPETTTSNVISRPEHDNINGGGTTWHIQIEKTSAGPDITKAIDNRTFEEVTQAELDARPYRNTNEDYKVTCNNDDSESPVLNLQIKKAEIVIKFGGSPNENVANNTNDTAAVENDRGDNAVNININPEEAKAGSSKLTELPNPDLKKKTNESQADDEGSEDSLSGCGSPTCRLLPEPTEYNAATTSVRPKSYPFDKRQSRNSGTWTPNVEKENPTGSDQDMGSQSPLLAQTNNSETNKTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	562	2.2.26 [Sep-21-2011]
Q9DBD2	286	E3 ubiquitin-protein liga	yes	N/A	0.311	0.611	0.441	5e-40
Q0VD59	289	E3 ubiquitin-protein liga	yes	N/A	0.316	0.615	0.418	2e-39
Q5T0T0	291	E3 ubiquitin-protein liga	yes	N/A	0.295	0.570	0.433	7e-39
Q28IK8	264	E3 ubiquitin-protein liga	yes	N/A	0.295	0.628	0.429	7e-38
Q5XH39	264	E3 ubiquitin-protein liga	N/A	N/A	0.295	0.628	0.429	7e-38
Q8TCQ1	289	E3 ubiquitin-protein liga	no	N/A	0.300	0.584	0.436	2e-37
Q6NZQ8	289	E3 ubiquitin-protein liga	no	N/A	0.302	0.588	0.434	2e-37

>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2 SV=1

 Score =  166 bits (419), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 98/222 (44%), Positives = 123/222 (55%), Gaps = 47/222 (21%)

Query: 16  SSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSH 75
           ++P    S+TS   SN  DICRICHCE   E SP ++P +C     L  +  AC      
Sbjct: 57  TAPVSAFSRTSVTPSNQ-DICRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWI- 111

Query: 76  PTSDVANCA----SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWS 131
            +SD   C      F    + KP   +R WE L+MT  ERRK++C+V FH +A+TCV+WS
Sbjct: 112 KSSDTRCCELCKYEFIMETKLKP---LRKWEKLQMTASERRKIMCSVTFHVIAITCVVWS 168

Query: 132 LYVLIERTVDEI----YTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAY 187
           LYVLI+RT +EI     TGILEWPFW KL+VV IGFTGG++FMY+QCK YL + +R KAY
Sbjct: 169 LYVLIDRTAEEIKQGQVTGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYLQLWKRLKAY 228

Query: 188 NSEGGPGMSNLRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPE 229
           N                                VIYVQN PE
Sbjct: 229 NR-------------------------------VIYVQNCPE 239

E3 ubiquitin-protein ligase that mediates ubiquitination of CD86 and MHC class II proteins, such as HLA-DR alpha and beta, and promotes their subsequent endocytosis and sorting to lysosomes via multivesicular bodies. May also promote ubiquitination and endocytosis of TFRC and FAS.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2 SV=1

 Score =  164 bits (415), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/232 (41%), Positives = 124/232 (53%), Gaps = 54/232 (23%)

Query: 26  SSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA- 84
           +S++ +  DICRICHCE   E SP ++P  C     L  +   C       +SD   C  
Sbjct: 68  TSVTPSNQDICRICHCEGDDE-SPLITPCRCT--GSLHFVHQTCLQ-QWIKSSDTRCCEL 123

Query: 85  ---SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVD 141
               F    + KP   +R WE L+MT  ERRK++C+V FH +A+TCV+WSLYVLI+RT +
Sbjct: 124 CKYEFIMETKLKP---LRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAE 180

Query: 142 EIY----TGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPGMSN 197
           EI     TGILEWPFW KL+VV IGFTGG++FMY+QCK Y+ + +R KAYN         
Sbjct: 181 EIRQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWRRLKAYNR-------- 232

Query: 198 LRPIRRSLTHPLGLFAPTPKVSGVIYVQNAP--------EKPSLPSPQLAMK 241
                                  VIYVQN P        EKP+LP P    K
Sbjct: 233 -----------------------VIYVQNCPETSKRNIFEKPALPEPNFESK 261

E3 ubiquitin-protein ligase that mediates ubiquitination of CD86 and MHC class II proteins, such as HLA-DR alpha and beta, and promotes their subsequent endocytosis and sorting to lysosomes via multivesicular bodies. May also promote ubiquitination and endocytosis of TFRC and FAS.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1 SV=1

 Score =  162 bits (410), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/212 (43%), Positives = 119/212 (56%), Gaps = 46/212 (21%)

Query: 26  SSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA- 84
           +S++ +  DICRICHCE   E SP ++P +C     L  +  AC       +SD   C  
Sbjct: 70  TSITPSSQDICRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWI-KSSDTRCCEL 125

Query: 85  ---SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVD 141
               F    + KP   +R WE L+MT  ERRK++C+V FH +A+TCV+WSLYVLI+RT +
Sbjct: 126 CKYEFIMETKLKP---LRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAE 182

Query: 142 EI----YTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPGMSN 197
           EI     TGILEWPFW KL+VV IGFTGG++FMY+QCK Y+ + +R KAYN         
Sbjct: 183 EIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNR-------- 234

Query: 198 LRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPE 229
                                  VIYVQN PE
Sbjct: 235 -----------------------VIYVQNCPE 243

E3 ubiquitin-protein ligase that mediates ubiquitination of CD86 and MHC class II proteins, such as HLA-DR alpha and beta, and promotes their subsequent endocytosis and sorting to lysosomes via multivesicular bodies. May also promote ubiquitination and endocytosis of TFRC and FAS.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8 PE=2 SV=1

 Score =  159 bits (401), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 118/212 (55%), Gaps = 46/212 (21%)

Query: 26  SSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA- 84
           +S++ +  DICRICHCE   E SP ++P +C     L  +  AC       +SD   C  
Sbjct: 43  TSVTPSSQDICRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWI-KSSDTRCCEL 98

Query: 85  ---SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVD 141
               F    + KP   +R WE L+MT  ERRK++C+V FH +A+TCV+WSLYVLI+RT +
Sbjct: 99  CKFEFIMETKLKP---LRKWEKLQMTASERRKIMCSVTFHVIAITCVVWSLYVLIDRTAE 155

Query: 142 EIYTG----ILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPGMSN 197
           EI  G    ILEWPFW KL+VV IGFTGG++FMY+QCK Y+ + +R KAYN         
Sbjct: 156 EIKMGQNNGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNR-------- 207

Query: 198 LRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPE 229
                                  VIYVQN PE
Sbjct: 208 -----------------------VIYVQNCPE 216

E3 ubiquitin-protein ligase that mediates ubiquitination of cd86 and MHC class II proteins, such as hla-dr alpha and beta, and promotes their subsequent endocytosis and sorting to lysosomes via multivesicular bodies.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2 SV=2

 Score =  159 bits (401), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 118/212 (55%), Gaps = 46/212 (21%)

Query: 26  SSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA- 84
           +S++ +  DICRICHCE   E SP ++P +C     L  +  AC       +SD   C  
Sbjct: 43  TSVTPSSQDICRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWI-KSSDTRCCEL 98

Query: 85  ---SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVD 141
               F    + KP   +R WE L+MT  ERRK++C+V FH +A+TCV+WSLYVLI+RT +
Sbjct: 99  CKFEFIMETKLKP---LRKWEKLQMTASERRKIMCSVTFHVIAITCVVWSLYVLIDRTAE 155

Query: 142 EIYTG----ILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPGMSN 197
           EI  G    ILEWPFW KL+VV IGFTGG++FMY+QCK Y+ + +R KAYN         
Sbjct: 156 EIRMGQNNGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNR-------- 207

Query: 198 LRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPE 229
                                  VIYVQN PE
Sbjct: 208 -----------------------VIYVQNCPE 216

E3 ubiquitin-protein ligase that mediates ubiquitination of cd86 and MHC class II proteins, such as hla-dr alpha and beta, and promotes their subsequent endocytosis and sorting to lysosomes via multivesicular bodies.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1 SV=1

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/204 (43%), Positives = 117/204 (57%), Gaps = 35/204 (17%)

Query: 13  LNRSSPDRCSSQTSSLSS--------------------NGFDICRICHCEVTPEASPDVS 52
           LN  SP R +S++S++S                     +  DICRICHCE   E SP ++
Sbjct: 37  LNEKSPGRSASRSSNISKASSPTTGTAPRSQSRLSVCPSTQDICRICHCE-GDEESPLIT 95

Query: 53  PAYCFWFSPLTSIRHACSSGSSHPTSDVANCA----SFSSSCRQKPNLSVRSWEHLEMTG 108
           P  C     L  +  +C       +SD   C      F    + KP   +R WE L+MT 
Sbjct: 96  PCRCT--GTLRFVHQSCLH-QWIKSSDTRCCELCKYDFIMETKLKP---LRKWEKLQMTT 149

Query: 109 MERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIY----TGILEWPFWIKLIVVVIGFT 164
            ERRK+ C+V FH +A+TCV+WSLYVLI+RT +EI      G+LEWPFW KL+VV IGFT
Sbjct: 150 SERRKIFCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGNDNGVLEWPFWTKLVVVAIGFT 209

Query: 165 GGVVFMYIQCKAYLHICQRWKAYN 188
           GG+VFMY+QCK Y+ + +R KAYN
Sbjct: 210 GGLVFMYVQCKVYVQLWRRLKAYN 233

E3 ubiquitin-protein ligase that mediates ubiquitination of TFRC, CD86, FAS and MHC class II proteins, such as HLA-DR alpha and beta, and promotes their subsequent endocytosis and sorting to lysosomes via multivesicular bodies. By constitutively ubiquitinating MHC class II proteins in immature dendritic cells, down-regulates their cell surface localization thus sequestering them in the intracellular endosomal system.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1 SV=2

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/205 (43%), Positives = 117/205 (57%), Gaps = 35/205 (17%)

Query: 12  NLNRSSPDRCSSQTSSLSS--------------------NGFDICRICHCEVTPEASPDV 51
            LN  SP R +S++S++S                     +  DICRICHCE   E SP +
Sbjct: 36  TLNEKSPGRSASRSSNISKASSPTTGTAPRSQSRLSVCPSTQDICRICHCE-GDEESPLI 94

Query: 52  SPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA----SFSSSCRQKPNLSVRSWEHLEMT 107
           +P  C     L  +  +C       +SD   C      F    + KP   +R WE L+MT
Sbjct: 95  TPCRCT--GTLRFVHQSCLHQWIK-SSDTRCCELCKYDFIMETKLKP---LRKWEKLQMT 148

Query: 108 GMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIY----TGILEWPFWIKLIVVVIGF 163
             ERRK+ C+V FH +A+TCV+WSLYVLI+RT +EI      G+LEWPFW KL+VV IGF
Sbjct: 149 TSERRKIFCSVTFHVIAVTCVVWSLYVLIDRTAEEIKQGNDNGVLEWPFWTKLVVVAIGF 208

Query: 164 TGGVVFMYIQCKAYLHICQRWKAYN 188
           TGG+VFMY+QCK Y+ + +R KAYN
Sbjct: 209 TGGLVFMYVQCKVYVQLWRRLKAYN 233


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.129    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 233,164,868
Number of Sequences: 539616
Number of extensions: 10955348
Number of successful extensions: 25895
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 24868
Number of HSP's gapped (non-prelim): 1044
length of query: 562
length of database: 191,569,459
effective HSP length: 123
effective length of query: 439
effective length of database: 125,196,691
effective search space: 54961347349
effective search space used: 54961347349
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)

E3 ubiquitin-protein ligase that mediates ubiquitination of TFRC, CD86, FAS and MHC class II proteins, such as HLA-DR alpha and beta, and promotes their subsequent endocytosis and sorting to lysosomes via multivesicular bodies. By constitutively ubiquitinating MHC class II proteins in immature dendritic cells, down-regulates their cell surface localization thus sequestering them in the intracellular endosomal system.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	562
193587390	408	PREDICTED: hypothetical protein LOC10016	0.601	0.828	0.378	2e-59
242024768	330	membrane-associated RING finger protein,	0.362	0.618	0.441	7e-48
443705954	179	hypothetical protein CAPTEDRAFT_45913, p	0.290	0.910	0.531	2e-44
432903648	284	PREDICTED: E3 ubiquitin-protein ligase M	0.286	0.566	0.511	2e-41
307191283	304	E3 ubiquitin-protein ligase MARCH8 [Camp	0.318	0.588	0.447	3e-41
432903646	282	PREDICTED: E3 ubiquitin-protein ligase M	0.286	0.570	0.511	3e-41
350409687	305	PREDICTED: E3 ubiquitin-protein ligase M	0.318	0.586	0.447	3e-41
340718597	305	PREDICTED: e3 ubiquitin-protein ligase M	0.318	0.586	0.447	3e-41
332017136	305	E3 ubiquitin-protein ligase MARCH8 [Acro	0.320	0.590	0.445	5e-41
322784939	305	hypothetical protein SINV_05325 [Solenop	0.318	0.586	0.447	5e-41

>gi|193587390|ref|XP_001944941.1| PREDICTED: hypothetical protein LOC100162351 [Acyrthosiphon pisum]

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 168/444 (37%), Positives = 217/444 (48%), Gaps = 106/444 (23%)

Query: 19  DRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTS 78
           D   S+ +S SS  FDICRICHCE   + +P ++P YC     L  +   C       +S
Sbjct: 25  DEGFSRNTSFSSMNFDICRICHCEGDID-TPLIAPCYCA--GSLRFVHQVCLQ-QWIKSS 80

Query: 79  DVANCA----SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYV 134
           ++  C      F    + KP      WEHLEM+GMER+KL+CA+LFH +A+TCV WSLYV
Sbjct: 81  NIRCCELCKFQFIMQTKTKP---FSQWEHLEMSGMERKKLVCAMLFHIIAMTCVCWSLYV 137

Query: 135 LIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPG 194
           L++RT++E+  G L+WPFW KLIVV IGFTGGVVFMYIQCK+Y  +CQRWKAYN      
Sbjct: 138 LMDRTLEEVERGQLDWPFWTKLIVVGIGFTGGVVFMYIQCKSYFMLCQRWKAYNR----- 192

Query: 195 MSNLRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPEKPSLPSPQLAMKSPGCPESHVVHME 254
                                     VIYVQNAPEKP      L        ES  V   
Sbjct: 193 --------------------------VIYVQNAPEKPRKNQTILI----DVAESSSVETN 222

Query: 255 HPPHLCAAPAPSYVDPSWDEDMMSNTKSIDLKGVRNLHIFF-NEENRICVQKDEKQSRLV 313
                 AA +     P  +++   +  SIDLKGVRN+HIFF NE+N I  Q+       V
Sbjct: 223 ------AATSIVPFKPPIEQN---DETSIDLKGVRNVHIFFNNEDNPIRFQE-------V 266

Query: 314 DYLETGEPSNPETTTSNVISRPEHDNINGGGTTWHIQIEKTSA-GPDITKAIDNRTFEEV 372
           D  E  +   P ++ +              GT+WHIQI KT    P+           E 
Sbjct: 267 DNREQEDIEKPISSDT--------------GTSWHIQIGKTQGENPE----------GEC 302

Query: 373 TQAELDARPYRNTNEDYKVTCNNDDSESPVLNLQIKKAEIVIKFGGS---PNENVANNTN 429
            QA                 C ++ S+   L LQIK AEIVIKFG +   PNE   +N N
Sbjct: 303 NQA---------------AVCQSNQSDPSFLKLQIKTAEIVIKFGQNETVPNEKEFDNKN 347

Query: 430 DTAAVENDRGDNAVNININPEEAK 453
               +E  +  N +    NP + +
Sbjct: 348 VNIQIEESKSKNDMPDIANPVQIR 371

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024768|ref|XP_002432798.1| membrane-associated RING finger protein, putative [Pediculus humanus corporis] gi|212518307|gb|EEB20060.1| membrane-associated RING finger protein, putative [Pediculus humanus corporis]

 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 110/249 (44%), Positives = 141/249 (56%), Gaps = 45/249 (18%)

Query: 20  RCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSD 79
           RC S+TS+LS+ G DICRICHCE     +  V+P YC     L  +   C       +SD
Sbjct: 44  RCPSETSTLSA-GQDICRICHCEGESNGNALVAPCYCS--GSLRWVHQQCLQ-QWIKSSD 99

Query: 80  VANCASFSSSCRQKPNL-SVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIER 138
           +  C            L +   WE L+MT +E+RKLLC+V FHAVALTCV WSLYVLI+R
Sbjct: 100 ITCCELCKFQFIMHSKLKAFNQWESLQMTPLEKRKLLCSVTFHAVALTCVAWSLYVLIDR 159

Query: 139 TVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGPGMSNL 198
           T +E+  G+LEWPFW KLIVV IGF+GGVVFMYIQCKAY+++C+RWKAYN          
Sbjct: 160 TAEELERGMLEWPFWTKLIVVAIGFSGGVVFMYIQCKAYVNLCKRWKAYNR--------- 210

Query: 199 RPIRRSLTHPLGLFAPTPKVSGVIYVQNAPEKPSLPSPQLAMKSPG---------CPESH 249
                                 +IY+QNAPEKP+LPS    ++S           CP+++
Sbjct: 211 ----------------------IIYIQNAPEKPALPSDLSKLQSSKIEAPPQVYICPKTN 248

Query: 250 VVHMEHPPH 258
              +  P H
Sbjct: 249 SAILNVPSH 257

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443705954|gb|ELU02250.1| hypothetical protein CAPTEDRAFT_45913, partial [Capitella teleta]

 Score =  186 bits (473), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 93/175 (53%), Positives = 116/175 (66%), Gaps = 12/175 (6%)

Query: 18  PDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPT 77
           PDR S  T SL+S+  D+CRICHCE    A P +SP  C     L  +   C       +
Sbjct: 3   PDR-SYSTVSLTSSAGDLCRICHCEAEVGA-PLISPCVCA--GSLKYVHQRCLQ-QWIKS 57

Query: 78  SDVANCA----SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLY 133
           +D  +C      F  + + KP    R W+ LEMT +ERRK+LC+V FH +A+TCVIWSLY
Sbjct: 58  ADTKSCELCKFDFQMTTKIKP---FRKWQKLEMTTVERRKVLCSVTFHVIAITCVIWSLY 114

Query: 134 VLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYN 188
           VLI+RT +EI  GILEWPFW KLIVV IGFTGG+VFMY+QCK Y+ +C+RWKAYN
Sbjct: 115 VLIDRTTEEIKAGILEWPFWTKLIVVAIGFTGGLVFMYVQCKMYMQLCRRWKAYN 169

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|432903648|ref|XP_004077186.1| PREDICTED: E3 ubiquitin-protein ligase MARCH8-like isoform 3 [Oryzias latipes]

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/172 (51%), Positives = 113/172 (65%), Gaps = 11/172 (6%)

Query: 21  CSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDV 80
           CS   +S+S +  DICRICHCE   E SP ++P +C     L  +   C       +SD 
Sbjct: 62  CSFSRTSVSPSSQDICRICHCE-GDEESPLITPCHCT--GSLRFVHQGCLQQWI-KSSDT 117

Query: 81  ANCA----SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLI 136
             C      F    + KP   +R WE L+MT  ERRK++C+V FH +A+TCV+WSLYVLI
Sbjct: 118 RCCELCKYEFIMETKFKP---LRKWEKLQMTASERRKIMCSVTFHIIAITCVVWSLYVLI 174

Query: 137 ERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYN 188
           +RT DEI +GILEWPFW KL+VV IGFTGG+VFMY+QCK Y+H+ +R KAYN
Sbjct: 175 DRTADEIRSGILEWPFWTKLVVVAIGFTGGLVFMYVQCKVYIHLWKRLKAYN 226

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307191283|gb|EFN74930.1| E3 ubiquitin-protein ligase MARCH8 [Camponotus floridanus]

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/221 (44%), Positives = 122/221 (55%), Gaps = 42/221 (19%)

Query: 18  PDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPT 77
           PD C S  S+LSS   DICRICHCE   E +P ++P YC     L  +  AC        
Sbjct: 51  PDHCHSSVSTLSSTNHDICRICHCE-GEEGAPLLAPCYCS--GSLRYVHQACLQQWIK-A 106

Query: 78  SDVANCA----SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLY 133
           SD   C     +F    + KP      WE LEM+ +E RKL CAV FHAVA  CV WSLY
Sbjct: 107 SDTRACELCKFTFIMHAKTKPFCE---WEKLEMSALEVRKLWCAVAFHAVAALCVAWSLY 163

Query: 134 VLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGP 193
           VL+ER+V+E   G ++W FW KLIVVVIG TGG+VFMYIQCKAY+ +C++W+A+N     
Sbjct: 164 VLVERSVEEARRGFVDWSFWTKLIVVVIGSTGGLVFMYIQCKAYITLCRKWRAFNR---- 219

Query: 194 GMSNLRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPEKPSLP 234
                                      VI++QNAPEK  LP
Sbjct: 220 ---------------------------VIFIQNAPEKVVLP 233

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432903646|ref|XP_004077185.1| PREDICTED: E3 ubiquitin-protein ligase MARCH8-like isoform 2 [Oryzias latipes]

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/172 (51%), Positives = 113/172 (65%), Gaps = 11/172 (6%)

Query: 21  CSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDV 80
           CS   +S+S +  DICRICHCE   E SP ++P +C     L  +   C       +SD 
Sbjct: 60  CSFSRTSVSPSSQDICRICHCE-GDEESPLITPCHCT--GSLRFVHQGCLQQWI-KSSDT 115

Query: 81  ANCA----SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLI 136
             C      F    + KP   +R WE L+MT  ERRK++C+V FH +A+TCV+WSLYVLI
Sbjct: 116 RCCELCKYEFIMETKFKP---LRKWEKLQMTASERRKIMCSVTFHIIAITCVVWSLYVLI 172

Query: 137 ERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYN 188
           +RT DEI +GILEWPFW KL+VV IGFTGG+VFMY+QCK Y+H+ +R KAYN
Sbjct: 173 DRTADEIRSGILEWPFWTKLVVVAIGFTGGLVFMYVQCKVYIHLWKRLKAYN 224

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350409687|ref|XP_003488816.1| PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Bombus impatiens]

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/221 (44%), Positives = 122/221 (55%), Gaps = 42/221 (19%)

Query: 18  PDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPT 77
           PD C S  S+LSSN  DICRICHCE   E +P ++P YC     L  +  AC        
Sbjct: 51  PDHCHSSVSTLSSNNHDICRICHCE-GEEGAPLLAPCYCS--GSLRYVHQACLQQWIK-A 106

Query: 78  SDVANCA----SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLY 133
           SD   C     +F    + KP      WE LEM+ +E RKL CAV FHAVA  CV WSLY
Sbjct: 107 SDTRACELCKFTFIMHAKTKPFCE---WEKLEMSALEVRKLWCAVAFHAVAALCVAWSLY 163

Query: 134 VLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGP 193
           VL+ER+V+E   G ++W FW KLIVVVIG TGG+VFMYIQCK Y+ +C++W+A+N     
Sbjct: 164 VLVERSVEEARRGYVDWSFWTKLIVVVIGSTGGLVFMYIQCKVYITLCRKWRAFNR---- 219

Query: 194 GMSNLRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPEKPSLP 234
                                      VI++QNAPEK  LP
Sbjct: 220 ---------------------------VIFIQNAPEKVVLP 233

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718597|ref|XP_003397751.1| PREDICTED: e3 ubiquitin-protein ligase MARCH8-like [Bombus terrestris]

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/221 (44%), Positives = 122/221 (55%), Gaps = 42/221 (19%)

Query: 18  PDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPT 77
           PD C S  S+LSSN  DICRICHCE   E +P ++P YC     L  +  AC        
Sbjct: 51  PDHCHSSVSTLSSNNHDICRICHCE-GEEGAPLLAPCYCS--GSLRYVHQACLQQWIK-A 106

Query: 78  SDVANCA----SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLY 133
           SD   C     +F    + KP      WE LEM+ +E RKL CAV FHAVA  CV WSLY
Sbjct: 107 SDTRACELCKFTFIMHAKTKPFCE---WEKLEMSALEVRKLWCAVAFHAVAALCVAWSLY 163

Query: 134 VLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGP 193
           VL+ER+V+E   G ++W FW KLIVVVIG TGG+VFMYIQCK Y+ +C++W+A+N     
Sbjct: 164 VLVERSVEEARRGYVDWSFWTKLIVVVIGSTGGLVFMYIQCKVYITLCRKWRAFNR---- 219

Query: 194 GMSNLRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPEKPSLP 234
                                      VI++QNAPEK  LP
Sbjct: 220 ---------------------------VIFIQNAPEKVVLP 233

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017136|gb|EGI57935.1| E3 ubiquitin-protein ligase MARCH8 [Acromyrmex echinatior]

 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 99/222 (44%), Positives = 123/222 (55%), Gaps = 42/222 (18%)

Query: 18  PDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPT 77
           PD C S  ++LSS   DICRICHCE   E +P ++P YC     L  +  AC        
Sbjct: 51  PDDCHSSVNTLSSTNHDICRICHCE-GEEGAPLLAPCYCS--GSLRYVHQACLQQWIK-A 106

Query: 78  SDVANCA----SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLY 133
           SD   C     +F    + KP      WE LEM+ +E RKL CAV FHAVA  CV WSLY
Sbjct: 107 SDTRACELCKFTFIMHAKTKPFCE---WEKLEMSALEVRKLWCAVAFHAVAALCVAWSLY 163

Query: 134 VLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGP 193
           VL+ER+V+E   G ++W FW KLIVVVIG TGG+VFMYIQCKAY+ +C++W+A+N     
Sbjct: 164 VLVERSVEEARRGFVDWSFWTKLIVVVIGSTGGLVFMYIQCKAYITLCRKWRAFNR---- 219

Query: 194 GMSNLRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPEKPSLPS 235
                                      VI++QNAPEK  LPS
Sbjct: 220 ---------------------------VIFIQNAPEKVVLPS 234

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784939|gb|EFZ11710.1| hypothetical protein SINV_05325 [Solenopsis invicta]

 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 99/221 (44%), Positives = 122/221 (55%), Gaps = 42/221 (19%)

Query: 18  PDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPT 77
           PD C S  S+LSS   DICRICHCE   E +P ++P YC     L  +  AC        
Sbjct: 51  PDDCHSSVSTLSSTNHDICRICHCE-GEEGAPLLAPCYCS--GSLRYVHQACLQQWIK-A 106

Query: 78  SDVANCA----SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLY 133
           SD   C     +F    + KP      WE LEM+ +E RKL CAV FHAVA  CV WSLY
Sbjct: 107 SDTRACELCKFTFIMHAKTKPFCE---WEKLEMSALEVRKLWCAVAFHAVAALCVAWSLY 163

Query: 134 VLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQRWKAYNSEGGP 193
           VL+ER+V+E   G ++W FW KLIVVVIG TGG+VFMYIQCKAY+ +C++W+A+N     
Sbjct: 164 VLVERSVEEARRGFVDWSFWTKLIVVVIGSTGGLVFMYIQCKAYITLCRKWRAFNR---- 219

Query: 194 GMSNLRPIRRSLTHPLGLFAPTPKVSGVIYVQNAPEKPSLP 234
                                      VI++QNAPEK  LP
Sbjct: 220 ---------------------------VIFIQNAPEKVVLP 233

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	562
ZFIN|ZDB-GENE-080204-8	282	march8 "membrane-associated ri	0.307	0.613	0.441	1.3e-38
MGI|MGI:1919029	286	March8 "membrane-associated ri	0.295	0.580	0.45	3.4e-36
RGD|1309339	286	March8 "membrane-associated ri	0.295	0.580	0.45	3.4e-36
UNIPROTKB|E1C119	284	MARCH8 "Uncharacterized protei	0.282	0.559	0.456	1.5e-35
UNIPROTKB|Q0VD59	289	MARCH8 "E3 ubiquitin-protein l	0.295	0.574	0.438	1.6e-35
UNIPROTKB|Q5T0T0	291	MARCH8 "E3 ubiquitin-protein l	0.297	0.573	0.436	1.7e-35
UNIPROTKB|H0Y7C6	456	MARCH8 "E3 ubiquitin-protein l	0.277	0.342	0.447	5.4e-35
UNIPROTKB|F1PU05	289	MARCH8 "Uncharacterized protei	0.295	0.574	0.438	9.4e-35
UNIPROTKB|F1SDU8	480	MARCH8 "Uncharacterized protei	0.277	0.325	0.447	9.4e-35
UNIPROTKB|F1NVN8	455	MARCH8 "Uncharacterized protei	0.277	0.342	0.447	1.1e-34

ZFIN|ZDB-GENE-080204-8 march8 "membrane-associated ring finger (C3HC4) 8" [Danio rerio (taxid:7955)]

 Score = 380 (138.8 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
 Identities = 83/188 (44%), Positives = 106/188 (56%)

Query:     4 KPQSPIKVNLNRSSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLT 63
             K  SP  VN    +P  CS   SS++ +  DICRICHCE   E SP ++P +C     L 
Sbjct:    49 KAGSPTSVN----AP--CSFPRSSVTPSNQDICRICHCEGDDE-SPLITPCHCT--GSLR 99

Query:    64 SIRHACSSG--SSHPTSDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLF 120
              +  AC      S  T     C   F    + KP   +R WE L+MT  ERRK++C+V F
Sbjct:   100 FVHQACLQQWIKSSDTRCCELCKYDFIMETKLKP---LRKWEKLQMTASERRKIMCSVTF 156

Query:   121 HAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHI 180
             H +A+TCV+WSLYVLI+RT +EI  GILEWPFW KL             MY+QCK Y+ +
Sbjct:   157 HVIAITCVVWSLYVLIDRTAEEIKQGILEWPFWTKLVVVAIGFTGGLVFMYVQCKVYIQL 216

Query:   181 CQRWKAYN 188
              +R KAYN
Sbjct:   217 WRRLKAYN 224

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1919029 March8 "membrane-associated ring finger (C3HC4) 8" [Mus musculus (taxid:10090)]

 Score = 365 (133.5 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
 Identities = 81/180 (45%), Positives = 102/180 (56%)

Query:    16 SSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--S 73
             ++P    S+TS   SN  DICRICHCE   E SP ++P +C     L  +  AC      
Sbjct:    57 TAPVSAFSRTSVTPSNQ-DICRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWIK 112

Query:    74 SHPTSDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSL 132
             S  T     C   F    + KP   +R WE L+MT  ERRK++C+V FH +A+TCV+WSL
Sbjct:   113 SSDTRCCELCKYEFIMETKLKP---LRKWEKLQMTASERRKIMCSVTFHVIAITCVVWSL 169

Query:   133 YVLIERTVDEI----YTGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
             YVLI+RT +EI     TGILEWPFW KL             MY+QCK YL + +R KAYN
Sbjct:   170 YVLIDRTAEEIKQGQVTGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYLQLWKRLKAYN 229

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0002495 "antigen processing and presentation of peptide antigen via MHC class II" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IDA

GO:0005764 "lysosome" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0016874 "ligase activity" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0042289 "MHC class II protein binding" evidence=IPI

GO:0045347 "negative regulation of MHC class II biosynthetic process" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1309339 March8 "membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 365 (133.5 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
 Identities = 81/180 (45%), Positives = 102/180 (56%)

Query:    16 SSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--S 73
             ++P    S+TS   SN  DICRICHCE   E SP ++P +C     L  +  AC      
Sbjct:    57 TAPVSAFSRTSVTPSNQ-DICRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWIK 112

Query:    74 SHPTSDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSL 132
             S  T     C   F    + KP   +R WE L+MT  ERRK++C+V FH +A+TCV+WSL
Sbjct:   113 SSDTRCCELCKYEFIMETKLKP---LRKWEKLQMTASERRKIMCSVTFHVIAITCVVWSL 169

Query:   133 YVLIERTVDEI----YTGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
             YVLI+RT +EI     TGILEWPFW KL             MY+QCK YL + +R KAYN
Sbjct:   170 YVLIDRTAEEIKQGQVTGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYLQLWKRLKAYN 229

GO:0000209 "protein polyubiquitination" evidence=IEA;ISO

GO:0002495 "antigen processing and presentation of peptide antigen via MHC class II" evidence=IEA;ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005764 "lysosome" evidence=IEA;ISO

GO:0005768 "endosome" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0042289 "MHC class II protein binding" evidence=IEA;ISO

GO:0045347 "negative regulation of MHC class II biosynthetic process" evidence=IEA;ISO

UNIPROTKB|E1C119 MARCH8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 357 (130.7 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 79/173 (45%), Positives = 99/173 (57%)

Query:    23 SQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--SSHPTSDV 80
             S+TS   SN  DICRICHCE   E SP ++P +C     L  +  AC      S  T   
Sbjct:    61 SRTSVTPSNQ-DICRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWIKSSDTRCC 116

Query:    81 ANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERT 139
               C   F    + KP   +R WE L+MT  ERRK++C+V FH +A+TCV+WSLYVLI+RT
Sbjct:   117 ELCKYEFIMETKLKP---LRKWEKLQMTASERRKIMCSVTFHIIAITCVVWSLYVLIDRT 173

Query:   140 VDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
              +EI     TGILEWPFW KL             MY+QCK Y+ + +R KAYN
Sbjct:   174 AEEIKQGQTTGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYN 226

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q0VD59 MARCH8 "E3 ubiquitin-protein ligase MARCH8" [Bos taurus (taxid:9913)]

 Score = 350 (128.3 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
 Identities = 79/180 (43%), Positives = 99/180 (55%)

Query:    16 SSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--S 73
             S+P     +TS   SN  DICRICHCE   E SP ++P  C     L  +   C      
Sbjct:    59 SAPVSSFPRTSVTPSNQ-DICRICHCEGDDE-SPLITPCRCT--GSLHFVHQTCLQQWIK 114

Query:    74 SHPTSDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSL 132
             S  T     C   F    + KP   +R WE L+MT  ERRK++C+V FH +A+TCV+WSL
Sbjct:   115 SSDTRCCELCKYEFIMETKLKP---LRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSL 171

Query:   133 YVLIERTVDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
             YVLI+RT +EI     TGILEWPFW KL             MY+QCK Y+ + +R KAYN
Sbjct:   172 YVLIDRTAEEIRQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWRRLKAYN 231

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0005764 "lysosome" evidence=ISS

GO:0031901 "early endosome membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0045347 "negative regulation of MHC class II biosynthetic process" evidence=IEA

GO:0042289 "MHC class II protein binding" evidence=IEA

GO:0002495 "antigen processing and presentation of peptide antigen via MHC class II" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5T0T0 MARCH8 "E3 ubiquitin-protein ligase MARCH8" [Homo sapiens (taxid:9606)]

 Score = 359 (131.4 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
 Identities = 79/181 (43%), Positives = 103/181 (56%)

Query:    16 SSPDRCSS-QTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG-- 72
             S+P   SS   +S++ +  DICRICHCE   E SP ++P +C     L  +  AC     
Sbjct:    59 SAPAPVSSFSRTSITPSSQDICRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWI 115

Query:    73 SSHPTSDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWS 131
              S  T     C   F    + KP   +R WE L+MT  ERRK++C+V FH +A+TCV+WS
Sbjct:   116 KSSDTRCCELCKYEFIMETKLKP---LRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWS 172

Query:   132 LYVLIERTVDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAY 187
             LYVLI+RT +EI     TGILEWPFW KL             MY+QCK Y+ + +R KAY
Sbjct:   173 LYVLIDRTAEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAY 232

Query:   188 N 188
             N
Sbjct:   233 N 233

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0002495 "antigen processing and presentation of peptide antigen via MHC class II" evidence=IEA

GO:0042289 "MHC class II protein binding" evidence=IEA

GO:0045347 "negative regulation of MHC class II biosynthetic process" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005764 "lysosome" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0000209 "protein polyubiquitination" evidence=IDA

UNIPROTKB|H0Y7C6 MARCH8 "E3 ubiquitin-protein ligase MARCH8" [Homo sapiens (taxid:9606)]

 Score = 355 (130.0 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
 Identities = 76/170 (44%), Positives = 99/170 (58%)

Query:    26 SSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--SSHPTSDVANC 83
             S +S++G D+CRICHCE   E SP ++P +C     L  +  AC      S  T     C
Sbjct:   236 SPVSTSG-DVCRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWIKSSDTRCCELC 291

Query:    84 A-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDE 142
                F    + KP   +R WE L+MT  ERRK++C+V FH +A+TCV+WSLYVLI+RT +E
Sbjct:   292 KYEFIMETKLKP---LRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEE 348

Query:   143 IY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
             I     TGILEWPFW KL             MY+QCK Y+ + +R KAYN
Sbjct:   349 IKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYN 398

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PU05 MARCH8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 354 (129.7 bits), Expect = 9.4e-35, Sum P(2) = 9.4e-35
 Identities = 79/180 (43%), Positives = 99/180 (55%)

Query:    16 SSPDRCSSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--S 73
             S+P    S+ S   SN  DICRICHCE   E SP ++P  C     L  +   C      
Sbjct:    59 SAPASAFSRASVTPSNQ-DICRICHCE-GDEESPLITPCRCT--GSLHFVHQTCLQQWIK 114

Query:    74 SHPTSDVANCA-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSL 132
             S  T     C   F    + KP   +R WE L+MT  ERRK++C+V FH +A+TCV+WSL
Sbjct:   115 SSDTRCCELCKYEFIMEIKLKP---LRKWEKLQMTASERRKIMCSVTFHVIAITCVVWSL 171

Query:   133 YVLIERTVDEIY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
             YVLI+RT +EI     TGILEWPFW KL             MY+QCK Y+ + +R KAYN
Sbjct:   172 YVLIDRTTEEIKHGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYIQLWKRLKAYN 231

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1SDU8 MARCH8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 354 (129.7 bits), Expect = 9.4e-35, Sum P(2) = 9.4e-35
 Identities = 76/170 (44%), Positives = 99/170 (58%)

Query:    26 SSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--SSHPTSDVANC 83
             S +S++G D CRICHCE   E SP ++P +C     L  +  AC      S  T     C
Sbjct:   260 SPVSTSG-DACRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWIKSSDTRCCELC 315

Query:    84 A-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDE 142
                F    +QKP   +R WE L+MT  ERR+++C+V FH +A+TCV+WSLYVLI+RT +E
Sbjct:   316 KFEFIMETKQKP---LRKWEMLQMTARERRRIMCSVTFHVIAITCVVWSLYVLIDRTAEE 372

Query:   143 IY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
             I     TGILEWPFW KL             MY+QCK Y+ + +R KAYN
Sbjct:   373 IKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYN 422

GO:0045347 "negative regulation of MHC class II biosynthetic process" evidence=IEA

GO:0042289 "MHC class II protein binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0002495 "antigen processing and presentation of peptide antigen via MHC class II" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NVN8 MARCH8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 350 (128.3 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
 Identities = 76/170 (44%), Positives = 98/170 (57%)

Query:    26 SSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSG--SSHPTSDVANC 83
             S +S++G D CRICHCE   E SP ++P +C     L  +  AC      S  T     C
Sbjct:   235 SPVSASG-DTCRICHCEGDDE-SPLITPCHCT--GSLHFVHQACLQQWIKSSDTRCCELC 290

Query:    84 A-SFSSSCRQKPNLSVRSWEHLEMTGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDE 142
                F    + KP   +R WE L+MT  ERRK++C+V FH +A+TCV+WSLYVLI+RT +E
Sbjct:   291 KYEFIMETKLKP---LRKWEKLQMTASERRKIMCSVTFHIIAITCVVWSLYVLIDRTAEE 347

Query:   143 IY----TGILEWPFWIKLXXXXXXXXXXXXXMYIQCKAYLHICQRWKAYN 188
             I     TGILEWPFW KL             MY+QCK Y+ + +R KAYN
Sbjct:   348 IKQGQTTGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYN 397

GO:0008270 "zinc ion binding" evidence=IEA

GO:0042289 "MHC class II protein binding" evidence=IEA

GO:0045347 "negative regulation of MHC class II biosynthetic process" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0002495 "antigen processing and presentation of peptide antigen via MHC class II" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005768 "endosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	562
pfam04290	133	pfam04290, DctQ, Tripartite ATP-independent peripl	2e-04

>gnl|CDD|218009 pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 10/81 (12%)

Query: 110 ERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEI----YTGILEWPFWIKLIVVVIGFTG 165
            R + +  +L   +AL       +   +  V        T  L  P W   + + +GF  
Sbjct: 59  PRVRRVLDLLAALLALAFAAVLAWAGWDLVVASAGSGETTPALGIPLWWVYLALPVGF-- 116

Query: 166 GVVFMYIQCKAYLHICQRWKA 186
               + ++  A L + +  + 
Sbjct: 117 --ALLALR--ALLRLLRLLRG 133

The function of the members of this family is unknown, but DctQ homologues are invariably found in the tripartite ATP-independent periplasmic transporters. Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	562
KOG1609|consensus	323		99.7
PHA02825	162	LAP/PHD finger-like protein; Provisional	99.68
PHA02862	156	5L protein; Provisional	99.64
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	99.32
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	99.31
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	99.28
KOG3053|consensus	293		98.69
PF12428	118	DUF3675: Protein of unknown function (DUF3675) ; I	94.33
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	81.57

>KOG1609|consensus

Probab=99.70  E-value=1.2e-18  Score=165.63  Aligned_cols=155  Identities=21%  Similarity=0.301  Sum_probs=123.0

Q ss_pred             CCCCeeeEecCCCCCCCC--CCccCccCCCCCCceEEccccccccccCCCCccccc--cccccccccCCccccchhhccc
Q psy16527         31 NGFDICRICHCEVTPEAS--PDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA--SFSSSCRQKPNLSVRSWEHLEM  106 (562)
Q Consensus        31 Ss~diCRIChcEgd~e~~--pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE--eF~ms~reTKlKPLRqWekLqM  106 (562)
                      .++.+|||||++... ..  ++++||.|+  |+++|||+.|+++| ...+++..||  .+.+....++.++...|.+...
T Consensus        76 ~~~~~cRIc~~~~~~-~~~~~l~~pC~C~--g~l~~vH~~cl~~W-~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~~~~~  151 (323)
T KOG1609|consen   76 SSGPICRICHEEDEE-SNGLLLISPCSCK--GSLAYVHRSCLEKW-FSIKGNITCEICKSFFINVGTKLKPLIVISKVRS  151 (323)
T ss_pred             CCCCcEEEEeccccc-ccccccccCcccc--CcHHHHHHHHHHhh-hccccCeeeecccccceecceeecceeehhhhhh
Confidence            447899999987664 22  799999999  99999999999999 8999999999  3333223356667778887776


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcc----ccchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy16527        107 TGMERRKLLCAVLFHAVALTCVIWSLYVLIERTVDEIYTG----ILEWPFWIKLIVVVIGFTGGVVFMYIQCKAYLHICQ  182 (562)
Q Consensus       107 S~~ERRkLmCsVLFhVIAItCVIWSLYVLIeRTAeEIrqG----iLEwPFWTkLIVVAIGFtGgLVFMYIqCK~YvqLWR  182 (562)
                      .....+.+.+.++++...+.++.|+...++.+...++..+    ...+++|+.+.++++|+++..+++++.++.|..+|+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  231 (323)
T KOG1609|consen  152 GALSERTLSGMILLKVALLVAIIVSVLPLLLGLLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGYIFILK  231 (323)
T ss_pred             HhhhheeeehhhhhhhhhhheeeEEeehhhhhhhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHHHHHHH
Confidence            6666667777667777777777777777766666554442    366788888899999999999999999999999999


Q ss_pred             HHHHHcc
Q psy16527        183 RWKAYNS  189 (562)
Q Consensus       183 RWRA~Nr  189 (562)
                      +|+..+.
T Consensus       232 ~~~~~~~  238 (323)
T KOG1609|consen  232 SLKVKLV  238 (323)
T ss_pred             HHHHHHh
Confidence            9999999

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=99.68  E-value=2.9e-17  Score=153.35  Aligned_cols=83  Identities=17%  Similarity=0.211  Sum_probs=64.7

Q ss_pred             CCCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc----cccccccccCCccccchhhcc
Q psy16527         30 SNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA----SFSSSCRQKPNLSVRSWEHLE  105 (562)
Q Consensus        30 SSs~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE----eF~ms~reTKlKPLRqWekLq  105 (562)
                      +..++.|||||++++    ++.+||+|+  ||++|||++||++| +..|++..||    +|.+   .+..+|+++|....
T Consensus         5 s~~~~~CRIC~~~~~----~~~~PC~Ck--Gs~k~VH~sCL~rW-i~~s~~~~CeiC~~~Y~i---~~~~kpl~~W~~~~   74 (162)
T PHA02825          5 SLMDKCCWICKDEYD----VVTNYCNCK--NENKIVHKECLEEW-INTSKNKSCKICNGPYNI---KKNYKKCTKWRCSF   74 (162)
T ss_pred             CCCCCeeEecCCCCC----CccCCcccC--CCchHHHHHHHHHH-HhcCCCCcccccCCeEEE---EEecCCCccccccC
Confidence            578899999997643    467999999  99999999999999 9999999999    6666   56778999998877


Q ss_pred             cchHHHHHHHHHHHHHHH
Q psy16527        106 MTGMERRKLLCAVLFHAV  123 (562)
Q Consensus       106 MS~~ERRkLmCsVLFhVI  123 (562)
                      +...+ +.++-+.+|+++
T Consensus        75 ~dc~~-~~l~~~llcl~~   91 (162)
T PHA02825         75 RDCHD-SAIVNSLLCLIV   91 (162)
T ss_pred             cchhh-HHHHHHHHHHHH
Confidence            65443 334433444433

>PHA02862 5L protein; Provisional

Probab=99.64  E-value=8e-17  Score=149.12  Aligned_cols=74  Identities=18%  Similarity=0.299  Sum_probs=60.5

Q ss_pred             CCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc----cccccccccCCccccchhh---cc
Q psy16527         33 FDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA----SFSSSCRQKPNLSVRSWEH---LE  105 (562)
Q Consensus        33 ~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE----eF~ms~reTKlKPLRqWek---Lq  105 (562)
                      .++|||||+++++    .++||+|+  ||++|||++||++| ++.|++..||    +|.+   +++.||+++|..   -+
T Consensus         2 ~diCWIC~~~~~e----~~~PC~C~--GS~K~VHq~CL~~W-In~S~k~~CeLCkteY~I---k~~yKpf~kW~~~f~d~   71 (156)
T PHA02862          2 SDICWICNDVCDE----RNNFCGCN--EEYKVVHIKCMQLW-INYSKKKECNLCKTKYNI---KKTYVSFKKWNWCFNDK   71 (156)
T ss_pred             CCEEEEecCcCCC----Cccccccc--CcchhHHHHHHHHH-HhcCCCcCccCCCCeEEE---EEccccHHHhhccCCCC
Confidence            4799999976543    37999999  99999999999999 9999999999    6766   778899999984   33


Q ss_pred             cchHHHHHHHH
Q psy16527        106 MTGMERRKLLC  116 (562)
Q Consensus       106 MS~~ERRkLmC  116 (562)
                      -+..+++-+++
T Consensus        72 k~~l~ki~fI~   82 (156)
T PHA02862         72 KTTLSKIFFIL   82 (156)
T ss_pred             CCchheeeeHh
Confidence            35566665544

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=99.32  E-value=1.6e-13  Score=105.30  Aligned_cols=46  Identities=35%  Similarity=0.614  Sum_probs=40.7

Q ss_pred             eeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527         35 ICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA   84 (562)
Q Consensus        35 iCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE   84 (562)
                      +||||+.++++ +++|++||.|+  ||++|||+.||++| +..+++..||
T Consensus         1 ~CrIC~~~~~~-~~~l~~PC~C~--G~~~~vH~~Cl~~W-~~~~~~~~C~   46 (49)
T smart00744        1 ICRICHDEGDE-GDPLVSPCRCK--GSLKYVHQECLERW-INESGNKTCE   46 (49)
T ss_pred             CccCCCCCCCC-CCeeEeccccC--CchhHHHHHHHHHH-HHHcCCCcCC
Confidence            69999974443 88999999999  99999999999999 8888777887

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=99.31  E-value=9.2e-14  Score=105.84  Aligned_cols=45  Identities=24%  Similarity=0.504  Sum_probs=34.6

Q ss_pred             eeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527         36 CRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA   84 (562)
Q Consensus        36 CRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE   84 (562)
                      ||||+.++++ +.+|++||.|+  ||++|||++||++| +..++...||
T Consensus         1 CrIC~~~~~~-~~~li~pC~C~--Gs~~~vH~~CL~~W-~~~~~~~~C~   45 (47)
T PF12906_consen    1 CRICLEGEEE-DEPLISPCRCK--GSMKYVHRSCLERW-IRESGNRKCE   45 (47)
T ss_dssp             ETTTTEE-SS-SS-EE-SSS-S--SCCGSEECCHHHHH-HHHHT-SB-T
T ss_pred             CeEeCCcCCC-CCceecccccC--CCcchhHHHHHHHH-HHhcCCCcCC
Confidence            9999977665 55899999999  99999999999999 7777777786

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=99.28  E-value=2.5e-12  Score=142.13  Aligned_cols=50  Identities=24%  Similarity=0.451  Sum_probs=47.2

Q ss_pred             CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527         31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA   84 (562)
Q Consensus        31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE   84 (562)
                      .+..+|||||||+.+ ++||..||+|+  ||+||+|++||..| +..|++..|+
T Consensus        10 ~d~~~CRICr~e~~~-d~pLfhPCKC~--GSIkYiH~eCL~eW-~~~s~~~kCd   59 (1175)
T COG5183          10 EDKRSCRICRTEDIR-DDPLFHPCKCS--GSIKYIHRECLMEW-MECSGTKKCD   59 (1175)
T ss_pred             ccchhceeecCCCCC-CCcCccccccc--chhHHHHHHHHHHH-HhcCCCccee
Confidence            466899999998876 99999999999  99999999999999 9999999999

>KOG3053|consensus

Probab=98.69  E-value=4.4e-09  Score=105.50  Aligned_cols=46  Identities=17%  Similarity=0.241  Sum_probs=35.6

Q ss_pred             CCCCCeeeEecCCCCC-CCCCCccCccCCCCCCceEEccccccccccCCC
Q psy16527         30 SNGFDICRICHCEVTP-EASPDVSPAYCFWFSPLTSIRHACSSGSSHPTS   78 (562)
Q Consensus        30 SSs~diCRIChcEgd~-e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksS   78 (562)
                      ......|+||+..+++ .-..++.||+|.  ||.|+|||+||.+| +.++
T Consensus        17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCR--Gt~KWVHqsCL~rW-iDEK   63 (293)
T KOG3053|consen   17 QELERCCWICFATDEDNRLAAWVHPCRCR--GTTKWVHQSCLSRW-IDEK   63 (293)
T ss_pred             cccceeEEEEeccCcccchhhhccccccc--CccHHHHHHHHHHH-HhHH
Confidence            4567899999743321 122369999999  99999999999999 8654

>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=94.33  E-value=0.12  Score=47.31  Aligned_cols=52  Identities=19%  Similarity=0.394  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHhccccchhhHHHHHHHHHHHhhhHHHHHHHHHH
Q psy16527        121 HAVALTCVIWSLYVLIERTVDEIYTGILEWPFWIKLIVVVIGFTGGVVFMYIQCKA  176 (562)
Q Consensus       121 hVIAItCVIWSLYVLIeRTAeEIrqGiLEwPFWTkLIVVAIGFtGgLVFMYIqCK~  176 (562)
                      ..+|++++   +.++++++..-+..|..+|+| ++|.++.+.+.|.++.|||+.|.
T Consensus        65 RsvAli~m---~LLllRhal~l~~~~~~~~s~-~lftl~~LRaaGilLP~Yim~ra  116 (118)
T PF12428_consen   65 RSVALIFM---VLLLLRHALALVTGGAEDYSF-TLFTLLLLRAAGILLPCYIMARA  116 (118)
T ss_pred             HHHHHHHH---HHHHHHHHHHHhcCCcccccH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence            44555443   345678887777778889998 77888899999999999998764

The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=81.57  E-value=0.12  Score=38.00  Aligned_cols=37  Identities=22%  Similarity=0.332  Sum_probs=25.0

Q ss_pred             CeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCC
Q psy16527         34 DICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTS   78 (562)
Q Consensus        34 diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksS   78 (562)
                      +.|-||+.+-..++.....|  |.     ...|..|+.+| ++.+
T Consensus         1 d~C~IC~~~~~~~~~~~~l~--C~-----H~fh~~Ci~~~-~~~~   37 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLP--CG-----HVFHRSCIKEW-LKRN   37 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEET--TS-----EEEEHHHHHHH-HHHS
T ss_pred             CCCcCCChhhcCCCeEEEcc--CC-----CeeCHHHHHHH-HHhC
Confidence            46889986554323333444  77     99999999999 6543

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	562
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.35
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	99.32
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	92.3
2ect_A	78	Ring finger protein 126; metal binding protein, st	87.36
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	86.84
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	83.24
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	82.3
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	80.3

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1.6e-13  Score=112.22  Aligned_cols=70  Identities=34%  Similarity=0.582  Sum_probs=55.2

Q ss_pred             CCCCcCCCCCCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc----cccccccccCCcc
Q psy16527         22 SSQTSSLSSNGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA----SFSSSCRQKPNLS   97 (562)
Q Consensus        22 sS~tSSlSSSs~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE----eF~ms~reTKlKP   97 (562)
                      .|.. +..+.+.+.||||+++.+. +++|+.||+|+  ||++++|+.||++| +..++...|+    .|.+   +++++|
T Consensus         5 ~s~~-s~~~~~~~~C~IC~~~~~~-~~~l~~pC~C~--Gs~h~fH~~Cl~~W-l~~~~~~~CplCr~~~~~---~~~~~P   76 (80)
T 2d8s_A            5 SSGT-SITPSSQDICRICHCEGDD-ESPLITPCHCT--GSLHFVHQACLQQW-IKSSDTRCCELCKYEFIM---ETKLSG   76 (80)
T ss_dssp             CCCC-CCCCTTSCCCSSSCCCCCS-SSCEECSSSCC--SSSCCEETTHHHHH-HHHHCCSBCSSSCCBCCC---CCCSCC
T ss_pred             cCCC-CCCCCCCCCCeEcCccccC-CCeeEeccccC--CcCCeeCHHHHHHH-HhhCCCCCCCCCCCeeec---CcccCC
Confidence            3444 3344678999999976654 67899999999  99999999999999 8887777899    5555   567777


Q ss_pred             cc
Q psy16527         98 VR   99 (562)
Q Consensus        98 LR   99 (562)
                      +.
T Consensus        77 ~~   78 (80)
T 2d8s_A           77 PS   78 (80)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=99.32  E-value=9.3e-14  Score=108.38  Aligned_cols=52  Identities=19%  Similarity=0.404  Sum_probs=44.8

Q ss_pred             CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc--cccc
Q psy16527         31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA--SFSS   88 (562)
Q Consensus        31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE--eF~m   88 (562)
                      .+.+.||||+.++   +++|+.||+|+  ||++|||+.||++| +..+++..||  ++.|
T Consensus         4 ~~~~~CrIC~~~~---~~~l~~PC~C~--gs~~~~H~~Cl~~W-~~~~~~~~C~~C~~~~   57 (60)
T 1vyx_A            4 EDVPVCWICNEEL---GNERFRACGCT--GELENVHRSCLSTW-LTISRNTACQICGVVY   57 (60)
T ss_dssp             CSCCEETTTTEEC---SCCCCCSCCCS--SGGGSCCHHHHHHH-HHHHTCSBCTTTCCBC
T ss_pred             CCCCEeEEeecCC---CCceecCcCCC--CchhhhHHHHHHHH-HHhCCCCccCCCCCee
Confidence            5788999999764   35799999999  99999999999999 8888888999  4444

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=92.30  E-value=0.067  Score=38.55  Aligned_cols=40  Identities=15%  Similarity=0.275  Sum_probs=27.7

Q ss_pred             CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCC
Q psy16527         31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPT   77 (562)
Q Consensus        31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLks   77 (562)
                      .+...|-||+..-..++.+...| .|.     ...|..|+.+| ++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~-~C~-----H~f~~~Ci~~w-~~~   42 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLP-RCG-----HGFHAECVDMW-LGS   42 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECS-SSC-----CEECTTHHHHT-TTT
T ss_pred             CCCCcCccCCccccCCCceEECC-CCC-----CcccHHHHHHH-HHc
Confidence            35678999986554423344555 465     67999999999 654

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=87.36  E-value=0.3  Score=37.54  Aligned_cols=44  Identities=16%  Similarity=0.286  Sum_probs=28.2

Q ss_pred             CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527         31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA   84 (562)
Q Consensus        31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE   84 (562)
                      .....|.||+..-.......+.|  |.     ...|..|+.+| ++.+  ..|-
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~--C~-----H~fc~~Ci~~~-~~~~--~~CP   56 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLP--CN-----HLFHDSCIVPW-LEQH--DSCP   56 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECT--TS-----CEEETTTTHHH-HTTT--CSCT
T ss_pred             CCCCCCeeCCccccCCCCEEEeC--CC-----CeecHHHHHHH-HHcC--CcCc
Confidence            45689999986543212122345  55     67899999999 6543  3454

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.84  E-value=0.29  Score=39.80  Aligned_cols=44  Identities=18%  Similarity=0.492  Sum_probs=30.5

Q ss_pred             CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527         31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA   84 (562)
Q Consensus        31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE   84 (562)
                      ...+.|-||+....+ +  ..-+ .|.     .-.|..|+.+| ++.+....|-
T Consensus        13 ~~i~~C~IC~~~i~~-g--~~C~-~C~-----h~fH~~Ci~kW-l~~~~~~~CP   56 (74)
T 2ct0_A           13 DAVKICNICHSLLIQ-G--QSCE-TCG-----IRMHLPCVAKY-FQSNAEPRCP   56 (74)
T ss_dssp             SSSCBCSSSCCBCSS-S--EECS-SSC-----CEECHHHHHHH-STTCSSCCCT
T ss_pred             CCCCcCcchhhHccc-C--CccC-CCC-----chhhHHHHHHH-HHhcCCCCCC
Confidence            455899999865543 1  1111 666     78899999999 8777556665

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.24  E-value=0.28  Score=37.39  Aligned_cols=44  Identities=16%  Similarity=0.427  Sum_probs=27.6

Q ss_pred             CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527         31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA   84 (562)
Q Consensus        31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE   84 (562)
                      .....|.||+..-..  ...+.-..|.     ...|..|+.+| ++...  .|-
T Consensus        13 ~~~~~C~IC~~~~~~--~~~~~~~~C~-----H~f~~~Ci~~~-~~~~~--~CP   56 (74)
T 2ep4_A           13 NLHELCAVCLEDFKP--RDELGICPCK-----HAFHRKCLIKW-LEVRK--VCP   56 (74)
T ss_dssp             CCSCBCSSSCCBCCS--SSCEEEETTT-----EEEEHHHHHHH-HHHCS--BCT
T ss_pred             CCCCCCcCCCcccCC--CCcEEEcCCC-----CEecHHHHHHH-HHcCC--cCC
Confidence            456899999865432  1222212366     77999999999 65432  455

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.30  E-value=0.43  Score=37.88  Aligned_cols=45  Identities=24%  Similarity=0.410  Sum_probs=29.0

Q ss_pred             CCCCeeeEecCCCCC----------CCC-CCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527         31 NGFDICRICHCEVTP----------EAS-PDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA   84 (562)
Q Consensus        31 Ss~diCRIChcEgd~----------e~~-pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE   84 (562)
                      .+.+.|-||+..-..          .+. ....| .|.     ...|..|+.+| ++.+.  .|-
T Consensus        13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~-~C~-----H~FH~~Ci~~W-l~~~~--~CP   68 (81)
T 2ecl_A           13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWG-ECN-----HSFHNCCMSLW-VKQNN--RCP   68 (81)
T ss_dssp             CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE-TTS-----CEEEHHHHHHH-TTTCC--BCT
T ss_pred             CCCCCCcccChhhhccCcccccccCCCceEEEeC-CCC-----CccChHHHHHH-HHhCC--CCC
Confidence            467889999754432          112 22333 676     88999999999 76543  555

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=80.30  E-value=0.45  Score=35.76  Aligned_cols=44  Identities=18%  Similarity=0.415  Sum_probs=28.9

Q ss_pred             CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527         31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA   84 (562)
Q Consensus        31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE   84 (562)
                      .....|.||+..-.....+.+.|  |.     ...|..|+.+| +..+.  .|-
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~--C~-----H~fc~~Ci~~~-~~~~~--~CP   55 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLP--CM-----HLFHQVCVDQW-LITNK--KCP   55 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECT--TS-----CEEEHHHHHHH-HHHCS--BCT
T ss_pred             CCCCCCeeCCccccCCCcEEEeC--CC-----CHHHHHHHHHH-HHcCC--CCc
Confidence            46678999976543323344566  45     66899999999 65432  355

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	562
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.58
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	93.05
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	90.32

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.58  E-value=1.9e-09  Score=80.92  Aligned_cols=48  Identities=21%  Similarity=0.454  Sum_probs=41.9

Q ss_pred             CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527         31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA   84 (562)
Q Consensus        31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE   84 (562)
                      .+..+|+||+.+.   +++++.||.|.  |+..++|+.||.+| +..+++..|.
T Consensus         4 ed~~~C~IC~~~~---~~~~~~~c~c~--~c~h~~H~~Cl~~W-~~~~~~~~CP   51 (60)
T d1vyxa_           4 EDVPVCWICNEEL---GNERFRACGCT--GELENVHRSCLSTW-LTISRNTACQ   51 (60)
T ss_dssp             CSCCEETTTTEEC---SCCCCCSCCCS--SGGGSCCHHHHHHH-HHHHTCSBCT
T ss_pred             CCCCCCccCCccC---CCceeEecccC--CCCCEEcHHHHHHH-HhhCCCCCCc
Confidence            5678999998643   46799999999  99999999999999 8877778888

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=93.05  E-value=0.023  Score=41.53  Aligned_cols=45  Identities=16%  Similarity=0.351  Sum_probs=29.6

Q ss_pred             CCCCeeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527         31 NGFDICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA   84 (562)
Q Consensus        31 Ss~diCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE   84 (562)
                      .++..|-||+.+-...+....-|+ |.     ...|..|+.+| ++.+  ..|-
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~-C~-----H~Fh~~Ci~~W-l~~~--~~CP   47 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPR-CG-----HGFHAECVDMW-LGSH--STCP   47 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSS-SC-----CEECTTHHHHT-TTTC--CSCS
T ss_pred             CCCCCCeEECccccCCCEEEEeCC-CC-----CcccHHHHHHH-HHhC--CcCC
Confidence            355679999876554233333343 66     78999999999 7653  3465

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.32  E-value=0.016  Score=41.77  Aligned_cols=42  Identities=17%  Similarity=0.305  Sum_probs=29.6

Q ss_pred             eeeEecCCCCCCCCCCccCccCCCCCCceEEccccccccccCCCCccccc
Q psy16527         35 ICRICHCEVTPEASPDVSPAYCFWFSPLTSIRHACSSGSSHPTSDVANCA   84 (562)
Q Consensus        35 iCRIChcEgd~e~~pLISPC~Cs~~GSLkyVHqsCL~rWrLksSdt~~CE   84 (562)
                      .|-||+++-+. +...+.+|.|.     ..+|..|+.+| ++..+. .|-
T Consensus         2 eCpICl~~~~~-~~~~~~~~~Cg-----H~~c~~C~~~w-~~~~~~-~CP   43 (52)
T d1ur6b_           2 ECPLCMEPLEI-DDINFFPCTCG-----YQICRFCWHRI-RTDENG-LCP   43 (52)
T ss_dssp             EETTTTEECCG-GGTTCCSSSSS-----CCCCHHHHHHH-TTTSCC-BCT
T ss_pred             CCcCCChhhhC-CCceEEecCCC-----CccchHHHHHH-HhhcCC-CCC
Confidence            48899765433 34456688898     89999999999 654432 454