Psyllid ID: psy16530


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80-
MEESWDQQRFCLESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTRTKIEAWKPK
cccccccccEEEEccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccEEEEEEEEccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccc
MEESWDQQRFCLESLFtisgslvpaewygwlhyktdylphedpgrpkykwMAEHtenfsgsnkqyvpysstrtkieawkpk
MEESWDQQRFCLESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTEnfsgsnkqyvpysstrtkieawkpk
MEESWDQQRFCLESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTRTKIEAWKPK
*******QRFCLESLFTISGSLVPAEWYGWLHYKTDYLPH*******YKW*******************************
***SWDQQRFCLESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTRTKI*AWKP*
********RFCLESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTRTKIEAWKPK
****WDQQRFCLESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTRTKIE*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEESWDQQRFCLESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTRTKIEAWKPK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query81 2.2.26 [Sep-21-2011]
Q9N2W7146 Probable NADH dehydrogena yes N/A 0.753 0.417 0.492 4e-09
O97725145 NADH dehydrogenase [ubiqu no N/A 0.839 0.468 0.426 1e-08
Q0MQ86145 NADH dehydrogenase [ubiqu N/A N/A 0.839 0.468 0.411 3e-08
Q0MQ87145 NADH dehydrogenase [ubiqu yes N/A 0.839 0.468 0.411 3e-08
Q9UI09145 NADH dehydrogenase [ubiqu yes N/A 0.839 0.468 0.411 3e-08
Q0MQ85145 NADH dehydrogenase [ubiqu N/A N/A 0.839 0.468 0.411 5e-08
Q7TMF3145 NADH dehydrogenase [ubiqu yes N/A 0.839 0.468 0.411 5e-08
Q9M9M9159 Probable NADH dehydrogena yes N/A 0.679 0.345 0.418 3e-05
>sp|Q9N2W7|NDUAC_CAEEL Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Caenorhabditis elegans GN=Y94H6A.8 PE=3 SV=2 Back     alignment and function desciption
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 2/63 (3%)

Query: 19  SGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSG-SNKQYVPYSSTRTKIEA 77
             + VP EW+ WLH+ TD  P   P  P   W+ EH EN S  ++K+YVPYS+TRTKI+ 
Sbjct: 78  DATQVPPEWHSWLHHITDDAPSVKPP-PTQDWVLEHKENTSIYADKKYVPYSTTRTKIQG 136

Query: 78  WKP 80
           W+P
Sbjct: 137 WQP 139




Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Caenorhabditis elegans (taxid: 6239)
>sp|O97725|NDUAC_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Bos taurus GN=NDUFA12 PE=1 SV=1 Back     alignment and function description
>sp|Q0MQ86|NDUAC_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Gorilla gorilla gorilla GN=NDUFA12 PE=2 SV=1 Back     alignment and function description
>sp|Q0MQ87|NDUAC_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pan troglodytes GN=NDUFA12 PE=2 SV=1 Back     alignment and function description
>sp|Q9UI09|NDUAC_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Homo sapiens GN=NDUFA12 PE=1 SV=1 Back     alignment and function description
>sp|Q0MQ85|NDUAC_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pongo pygmaeus GN=NDUFA12 PE=2 SV=1 Back     alignment and function description
>sp|Q7TMF3|NDUAC_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Mus musculus GN=Ndufa12 PE=1 SV=2 Back     alignment and function description
>sp|Q9M9M9|NDUAC_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query81
357624894128 hypothetical protein KGM_14839 [Danaus p 0.851 0.539 0.681 2e-20
288856293139 NADH dehydrogenase (ubiquinone) 1 alpha 0.814 0.474 0.681 4e-20
383861823139 PREDICTED: probable NADH dehydrogenase [ 0.765 0.446 0.693 1e-19
322784947140 hypothetical protein SINV_07082 [Solenop 0.802 0.464 0.646 4e-19
307178139106 Probable NADH dehydrogenase [ubiquinone] 0.802 0.613 0.630 2e-18
332017162142 Putative NADH dehydrogenase [ubiquinone] 0.765 0.436 0.661 2e-18
91085133141 PREDICTED: similar to AGAP008653-PA [Tri 0.765 0.439 0.677 2e-17
240849013141 NADH dehydrogenase [ubiquinone] 1 alpha 0.765 0.439 0.645 3e-17
350413291142 PREDICTED: probable NADH dehydrogenase [ 0.753 0.429 0.622 6e-17
340708525142 PREDICTED: NADH dehydrogenase [ubiquinon 0.753 0.429 0.622 6e-17
>gi|357624894|gb|EHJ75497.1| hypothetical protein KGM_14839 [Danaus plexippus] Back     alignment and taxonomy information
 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 53/69 (76%)

Query: 13  ESLFTISGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTR 72
           ++     GS V AEWYGWLHYKTD  PH+DP RPKYKWMAE TEN SG+  QYVPYS+TR
Sbjct: 55  KAYLNYDGSQVSAEWYGWLHYKTDLPPHKDPSRPKYKWMAEFTENMSGTTGQYVPYSTTR 114

Query: 73  TKIEAWKPK 81
            K+EAW PK
Sbjct: 115 EKVEAWVPK 123




Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|288856293|ref|NP_001165800.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383861823|ref|XP_003706384.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|322784947|gb|EFZ11718.1| hypothetical protein SINV_07082 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307178139|gb|EFN66947.1| Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332017162|gb|EGI57961.1| Putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|91085133|ref|XP_969714.1| PREDICTED: similar to AGAP008653-PA [Tribolium castaneum] gi|270009297|gb|EFA05745.1| hypothetical protein TcasGA2_TC015691 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|240849013|ref|NP_001155728.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Acyrthosiphon pisum] gi|239789236|dbj|BAH71255.1| ACYPI007810 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|350413291|ref|XP_003489949.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340708525|ref|XP_003392875.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query81
FB|FBgn0031436142 CG3214 [Drosophila melanogaste 0.765 0.436 0.629 4.9e-21
UNIPROTKB|F1SQP4147 NDUFA12 "Uncharacterized prote 0.827 0.455 0.463 1.5e-12
WB|WBGene00022380146 Y94H6A.8.2 [Caenorhabditis ele 0.703 0.390 0.525 1.5e-12
UNIPROTKB|O97725145 NDUFA12 "NADH dehydrogenase [u 0.814 0.455 0.455 5e-12
ZFIN|ZDB-GENE-050828-1146 ndufa12 "NADH dehydrogenase (u 0.814 0.452 0.470 6.4e-12
UNIPROTKB|F1PWZ9145 NDUFA12 "Uncharacterized prote 0.814 0.455 0.455 8.2e-12
UNIPROTKB|F1NW95149 NDUFA12 "Uncharacterized prote 0.814 0.442 0.455 2.8e-11
UNIPROTKB|Q9UI09145 NDUFA12 "NADH dehydrogenase [u 0.814 0.455 0.441 2.8e-11
MGI|MGI:1913664145 Ndufa12 "NADH dehydrogenase (u 0.814 0.455 0.441 3.5e-11
RGD|1311462148 Ndufa12 "NADH dehydrogenase (u 0.814 0.445 0.441 4.5e-11
FB|FBgn0031436 CG3214 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 39/62 (62%), Positives = 50/62 (80%)

Query:    20 GSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSSTRTKIEAWK 79
             GS++PAEWYGW+HYKTD  P  D  RPKYKW+A+H+EN SG+ + Y PYS+T  K+EAW+
Sbjct:    77 GSMIPAEWYGWMHYKTDLPPIRDGCRPKYKWIADHSENLSGTKEAYYPYSTTPNKVEAWE 136

Query:    80 PK 81
             PK
Sbjct:   137 PK 138




GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS
GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS
GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS
GO:0003954 "NADH dehydrogenase activity" evidence=ISS
GO:0009055 "electron carrier activity" evidence=IEA
UNIPROTKB|F1SQP4 NDUFA12 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
WB|WBGene00022380 Y94H6A.8.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|O97725 NDUFA12 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050828-1 ndufa12 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PWZ9 NDUFA12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NW95 NDUFA12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UI09 NDUFA12 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1913664 Ndufa12 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311462 Ndufa12 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query81
pfam05071100 pfam05071, NDUFA12, NADH ubiquinone oxidoreductase 8e-17
PRK08183133 PRK08183, PRK08183, NADH dehydrogenase; Validated 3e-09
PLN02732159 PLN02732, PLN02732, Probable NADH dehydrogenase [u 4e-08
COG3761118 COG3761, COG3761, NADH:ubiquinone oxidoreductase 1 2e-05
PLN03095115 PLN03095, PLN03095, NADH:ubiquinone oxidoreductase 0.001
>gnl|CDD|218414 pfam05071, NDUFA12, NADH ubiquinone oxidoreductase subunit NDUFA12 Back     alignment and domain information
 Score = 68.1 bits (167), Expect = 8e-17
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 20  GSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSGSNKQYVPYSS------TRT 73
            S VP EW+GWLH+ TD  P E+P      W   H  N +G+   Y PY S         
Sbjct: 35  ASRVPPEWHGWLHHTTDEPPTEEP-LKPRAWEKPHQPNLTGTPGAYRPYGSLLRRPRATG 93

Query: 74  KIEAWKP 80
             EAW P
Sbjct: 94  DYEAWTP 100


This family contains the 17.2 kD subunit of complex I (NDUFA12) and its homologues. The family also contains a second related eukaryotic protein of unknown function, . Length = 100

>gnl|CDD|236176 PRK08183, PRK08183, NADH dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|215389 PLN02732, PLN02732, Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit Back     alignment and domain information
>gnl|CDD|226284 COG3761, COG3761, NADH:ubiquinone oxidoreductase 17 Back     alignment and domain information
>gnl|CDD|215571 PLN03095, PLN03095, NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 81
KOG3382|consensus151 100.0
PLN03095115 NADH:ubiquinone oxidoreductase 18 kDa subunit; Pro 100.0
PRK08183133 NADH dehydrogenase; Validated 100.0
PLN02732159 Probable NADH dehydrogenase [ubiquinone] 1 alpha s 100.0
COG3761118 NADH:ubiquinone oxidoreductase 17.2 kD subunit [En 99.96
PF05071105 NDUFA12: NADH ubiquinone oxidoreductase subunit ND 99.96
PRK0663099 hypothetical protein; Provisional 99.86
>KOG3382|consensus Back     alignment and domain information
Probab=100.00  E-value=4.6e-36  Score=205.66  Aligned_cols=79  Identities=47%  Similarity=0.879  Sum_probs=74.8

Q ss_pred             CcCCccceEEcCC---cCCCCCccCccchhhhccccCCCCCCCCCCCCCCcccCCcCCCCC-CCCccccCCCCcCccccC
Q psy16530          3 ESWDQQRFCLESL---FTISGSLVPAEWYGWLHYKTDYLPHEDPGRPKYKWMAEHTENFSG-SNKQYVPYSSTRTKIEAW   78 (81)
Q Consensus         3 e~~gr~RwV~y~~---~~~daS~IPPeWH~WLH~~~D~~P~~~~~~~~~~w~~~h~~N~TG-T~~aY~P~~t~~~k~~~W   78 (81)
                      -++||||||+|+.   +||||||||||||+|||+|+|+||++..+++.++|..+|.+|+|| |..+|+||+|++.||++|
T Consensus        65 ~fygRhRWVeya~kv~~Dyd~S~VP~EWh~WlH~iTD~~p~~~~~~~~~k~i~eHkeN~Sg~t~e~y~Pystt~tkiq~W  144 (151)
T KOG3382|consen   65 YFYGRHRWVEYASKVNWDYDASQVPAEWHGWLHFITDDPPDEKLPLPPKKWILEHKENFSGETGETYVPYSTTRTKIQSW  144 (151)
T ss_pred             eecccceeEEecccccccccccCCCHHHHhHhHhhccCCccccCCCCHHHHhHhccccccccCCceeccCcCChhHhhee
Confidence            4789999999986   889999999999999999999999998658999999999999999 999999999999999999


Q ss_pred             CCC
Q psy16530         79 KPK   81 (81)
Q Consensus        79 ~P~   81 (81)
                      .|.
T Consensus       145 ~P~  147 (151)
T KOG3382|consen  145 VPT  147 (151)
T ss_pred             cCC
Confidence            984



>PLN03095 NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional Back     alignment and domain information
>PRK08183 NADH dehydrogenase; Validated Back     alignment and domain information
>PLN02732 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit Back     alignment and domain information
>COG3761 NADH:ubiquinone oxidoreductase 17 Back     alignment and domain information
>PF05071 NDUFA12: NADH ubiquinone oxidoreductase subunit NDUFA12; InterPro: IPR007763 NADH:ubiquinone oxidoreductase (complex I) (1 Back     alignment and domain information
>PRK06630 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00