Psyllid ID: psy16532

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
MTSCDQETQFVSNCSDHENDETCRKKRCTDRYDSSESSDRTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD
Secondary Structure (PSIPRED)
ccccccccEEcccccccccHHHHHHHHHccccccccEEEcccccEEcEEEEEEccccEEccccccccccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEccccccccHHHHHcccccccccHHHHHccccccEEEEEEEcccccEEEEcccccccccEEEEEccccccccc
Coil and Loop (DISEMBL)
mtscdqetqfvsncsdhendetcrkkrctdrydssessdrtddlkfgtLVGVDKlgnkyyenkhyfygrnrWVVYHEKFGLNYD
Flexible Loop (DISEMBL)
mtscdqetqfvsncsdhendetcrkkrctdrydssessdrtddlkfgtlvgvdklgnkyyenkhyfygrnrWVVYHEKFGLNYD
Low Complexity Region (SEG)
MTSCDQETQFVSNCSDHENDETCRKKRCTDRYDSSESSDRTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD
Disordered region (IsUnstruct)
*******************************************LKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGL***
Disordered Region (DISOPRED)
*************C******ETCRKKRCTDRYDSSESSDRTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD
Disordered Region (DISEMBL)
*****************************************DDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD
Disordered Region (DISPRO)
*******TQFVSNCSDHENDETCRKKRCTDRYDSSESSDRTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSCDQETQFVSNCSDHENDETCRKKRCTDRYDSSESSDRTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	84	2.2.26 [Sep-21-2011]
Q54MV7	138	NADH dehydrogenase [ubiqu	yes	N/A	0.416	0.253	0.714	7e-09
Q0MQ86	145	NADH dehydrogenase [ubiqu	N/A	N/A	0.428	0.248	0.694	1e-07
Q0MQ87	145	NADH dehydrogenase [ubiqu	yes	N/A	0.428	0.248	0.694	2e-07
Q9UI09	145	NADH dehydrogenase [ubiqu	yes	N/A	0.428	0.248	0.694	2e-07
Q0MQ85	145	NADH dehydrogenase [ubiqu	N/A	N/A	0.428	0.248	0.694	2e-07
Q9N2W7	146	Probable NADH dehydrogena	yes	N/A	0.511	0.294	0.558	3e-07
Q7TMF3	145	NADH dehydrogenase [ubiqu	yes	N/A	0.428	0.248	0.611	3e-07
O97725	145	NADH dehydrogenase [ubiqu	yes	N/A	0.428	0.248	0.611	7e-07

>sp|Q54MV7|NDUAC_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Dictyostelium discoideum GN=ndufa12 PE=2 SV=2

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 30/35 (85%)

Query: 41 TDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
          T +LKFGTLVGVDK+GN+YYEN+   YGR+RWV Y
Sbjct: 26 TGELKFGTLVGVDKVGNRYYENRQEIYGRHRWVEY 60

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Dictyostelium discoideum (taxid: 44689)

>sp|Q0MQ86|NDUAC_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Gorilla gorilla gorilla GN=NDUFA12 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
          RT+D K GTLVG DK GNKYYE+   F+GR+RWVVY
Sbjct: 29 RTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVVY 64

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q0MQ87|NDUAC_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pan troglodytes GN=NDUFA12 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
          RT+D K GTLVG DK GNKYYE+   F+GR+RWVVY
Sbjct: 29 RTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVVY 64

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

>sp|Q9UI09|NDUAC_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Homo sapiens GN=NDUFA12 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
          RT+D K GTLVG DK GNKYYE+   F+GR+RWVVY
Sbjct: 29 RTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVVY 64

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q0MQ85|NDUAC_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pongo pygmaeus GN=NDUFA12 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
          RT+D K GTLVG DK GNKYYE+   F+GR+RWVVY
Sbjct: 29 RTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVVY 64

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|Q9N2W7|NDUAC_CAEEL Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Caenorhabditis elegans GN=Y94H6A.8 PE=3 SV=2

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 29/43 (67%)

Query: 42 DDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD 84
          D  + GTLVG D  GN+YYEN  YF  RNRWV + +K  L+YD
Sbjct: 36 DATRVGTLVGSDNFGNRYYENNAYFVPRNRWVEFPDKVWLDYD 78

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Caenorhabditis elegans (taxid: 6239)

>sp|Q7TMF3|NDUAC_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Mus musculus GN=Ndufa12 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 29/36 (80%)

Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
          R +D++ GTLVG DK GNKYYE+   F+GR+RWV+Y
Sbjct: 29 RANDIRIGTLVGEDKYGNKYYEDNKQFFGRHRWVIY 64

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

>sp|O97725|NDUAC_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Bos taurus GN=NDUFA12 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 29/36 (80%)

Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
          R +D++ GTLVG DK GNKYYE+   F+GR+RWV+Y
Sbjct: 29 RANDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVIY 64

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
56756378	136	SJCHGC08585 protein [Schistosoma japonic	0.535	0.330	0.711	3e-11
242007248	141	NADH-ubiquinone oxidoreductase subunit B	0.547	0.326	0.673	4e-11
332017162	142	Putative NADH dehydrogenase [ubiquinone]	0.535	0.316	0.688	1e-10
383861823	139	PREDICTED: probable NADH dehydrogenase [	0.535	0.323	0.711	2e-10
307204005	133	NADH dehydrogenase [ubiquinone] 1 alpha	0.630	0.398	0.566	3e-10
322784947	140	hypothetical protein SINV_07082 [Solenop	0.535	0.321	0.666	3e-10
256086393	136	NADH-ubiquinone oxidoreductase [Schistos	0.535	0.330	0.644	4e-10
442756971	140	Putative nadh:ubiquinone oxidoreductase	0.559	0.335	0.659	5e-10
195437282	141	GK24493 [Drosophila willistoni] gi|19416	0.535	0.319	0.622	9e-10
241106593	140	NADH:ubiquinone oxidoreductase, putative	0.559	0.335	0.638	1e-09

>gi|56756378|gb|AAW26362.1| SJCHGC08585 protein [Schistosoma japonicum] gi|226467670|emb|CAX69711.1| NADH dehydrogenase [Schistosoma japonicum] gi|226481527|emb|CAX73661.1| NADH dehydrogenase [Schistosoma japonicum]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 36/45 (80%)

Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD 84
          RTDDLK+G LVG DK GNKYYEN  YF GRNRWVVY  +FG +Y+
Sbjct: 29 RTDDLKWGNLVGTDKFGNKYYENNKYFVGRNRWVVYSNRFGWDYE 73

Source: Schistosoma japonicum

Species: Schistosoma japonicum

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|242007248|ref|XP_002424454.1| NADH-ubiquinone oxidoreductase subunit B17.2, putative [Pediculus humanus corporis] gi|212507854|gb|EEB11716.1| NADH-ubiquinone oxidoreductase subunit B17.2, putative [Pediculus humanus corporis]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 37/46 (80%)

Query: 39 DRTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD 84
          +R DDLK G LVG D+ GNKYYEN  YFYGRNRWV+Y ++FG +YD
Sbjct: 30 NRIDDLKLGKLVGSDRFGNKYYENDSYFYGRNRWVIYSDRFGYDYD 75

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017162|gb|EGI57961.1| Putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Acromyrmex echinatior]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 36/45 (80%)

Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD 84
          R D+LK GTL+G DK GN+YYEN  YF GRNRWV+Y +K GLNYD
Sbjct: 35 RVDELKSGTLIGEDKYGNRYYENNMYFLGRNRWVIYADKVGLNYD 79

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|383861823|ref|XP_003706384.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12-like [Megachile rotundata]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 35/45 (77%)

Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD 84
          R D+LK GTLVG DK GNKYYEN  YFYG NRWVVY E+ G+ YD
Sbjct: 32 RMDELKSGTLVGEDKYGNKYYENNSYFYGSNRWVVYSERVGMEYD 76

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|307204005|gb|EFN82909.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Harpegnathos saltator]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 32 YDSSESSDRTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD 84
          ++S ++  R DDLK GTL+G DK GN+YYE+ ++F GRNRWV+Y ++ GLNYD
Sbjct: 18 WNSLKTIYRVDDLKSGTLIGEDKYGNRYYEDNNFFMGRNRWVIYADRVGLNYD 70

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|322784947|gb|EFZ11718.1| hypothetical protein SINV_07082 [Solenopsis invicta]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD 84
          R D+LK GTLVG DK GN+YYEN  +F GRNRW++Y +K GLNYD
Sbjct: 33 RVDELKSGTLVGEDKYGNRYYENNAHFVGRNRWIIYADKVGLNYD 77

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|256086393|ref|XP_002579384.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni] gi|350645231|emb|CCD60060.1| NADH-ubiquinone oxidoreductase subunit B17.2,putative [Schistosoma mansoni]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 36/45 (80%)

Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD 84
          RTD+LK+G LVG D  GNKYYEN +YF GRNRWV+Y  +FG +Y+
Sbjct: 29 RTDELKWGKLVGTDNFGNKYYENNNYFVGRNRWVIYSNRFGWDYE 73

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|442756971|gb|JAA70644.1| Putative nadh:ubiquinone oxidoreductase b17.2 subunit [Ixodes ricinus]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 36/47 (76%)

Query: 38 SDRTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD 84
          S R DDL+ GTLVG DKLGNKYYEN  +FYGRNRWV Y + +  +YD
Sbjct: 29 SFRMDDLRMGTLVGTDKLGNKYYENNRFFYGRNRWVEYADHYHFDYD 75

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195437282|ref|XP_002066569.1| GK24493 [Drosophila willistoni] gi|194162654|gb|EDW77555.1| GK24493 [Drosophila willistoni]

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 35/45 (77%)

Query: 40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD 84
          R DDLK GTLVG+DK GNKY+EN +YFYGRNRW+ +     ++YD
Sbjct: 32 RNDDLKIGTLVGIDKYGNKYFENPYYFYGRNRWIEFAPHVNMDYD 76

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241106593|ref|XP_002410063.1| NADH:ubiquinone oxidoreductase, putative [Ixodes scapularis] gi|215492875|gb|EEC02516.1| NADH:ubiquinone oxidoreductase, putative [Ixodes scapularis]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 36/47 (76%)

Query: 38 SDRTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD 84
          S R DDL+ GTLVG DK+GNKYYEN  +FYGRNRWV Y + +  +YD
Sbjct: 29 SFRMDDLRMGTLVGTDKVGNKYYENNRFFYGRNRWVEYADHYNFDYD 75

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
FB|FBgn0031436	142	CG3214 [Drosophila melanogaste	0.535	0.316	0.622	5.6e-13
UNIPROTKB|F1NW95	149	NDUFA12 "Uncharacterized prote	0.511	0.288	0.681	7.4e-11
DICTYBASE|DDB_G0285783	138	ndufa12 "NADH dehydrogenase ub	0.416	0.253	0.714	3.2e-10
UNIPROTKB|F8VRD8	99	NDUFA12 "NADH dehydrogenase [u	0.428	0.363	0.694	1.1e-09
UNIPROTKB|Q9UI09	145	NDUFA12 "NADH dehydrogenase [u	0.428	0.248	0.694	1.1e-09
UNIPROTKB|F1PWZ9	145	NDUFA12 "Uncharacterized prote	0.428	0.248	0.638	1.8e-09
MGI|MGI:1913664	145	Ndufa12 "NADH dehydrogenase (u	0.428	0.248	0.611	3.6e-09
RGD|1311462	148	Ndufa12 "NADH dehydrogenase (u	0.428	0.243	0.611	3.6e-09
UNIPROTKB|O97725	145	NDUFA12 "NADH dehydrogenase [u	0.428	0.248	0.611	5.9e-09
UNIPROTKB|F1SQP4	147	NDUFA12 "Uncharacterized prote	0.428	0.244	0.611	5.9e-09

FB|FBgn0031436 CG3214 [Drosophila melanogaster (taxid:7227)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 28/45 (62%), Positives = 35/45 (77%)

Query:    40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD 84
             R DDLK GTLVG+DK GNKY+EN +YFYGRNRW+ +     ++YD
Sbjct:    32 RNDDLKIGTLVGIDKYGNKYFENPYYFYGRNRWIEFAPHVNMDYD 76

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|F1NW95 NDUFA12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 30/44 (68%), Positives = 34/44 (77%)

Query:    40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY-HEKFGLN 82
             R +DLK GTLVGVDK GNKYYE+K  F+GR+RWVVY  E  G N
Sbjct:    33 RVNDLKTGTLVGVDKYGNKYYEDKRNFFGRHRWVVYTSEMNGKN 76

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

DICTYBASE|DDB_G0285783 ndufa12 "NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 12" [Dictyostelium discoideum (taxid:44689)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 25/35 (71%), Positives = 30/35 (85%)

Query:    41 TDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
             T +LKFGTLVGVDK+GN+YYEN+   YGR+RWV Y
Sbjct:    26 TGELKFGTLVGVDKVGNRYYENRQEIYGRHRWVEY 60

GO:0016020 "membrane" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F8VRD8 NDUFA12 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query:    40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
             RT+D K GTLVG DK GNKYYE+   F+GR+RWVVY
Sbjct:    29 RTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVVY 64

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q9UI09 NDUFA12 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query:    40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
             RT+D K GTLVG DK GNKYYE+   F+GR+RWVVY
Sbjct:    29 RTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVVY 64

GO:0009055 "electron carrier activity" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=NAS

GO:0007585 "respiratory gaseous exchange" evidence=NAS

GO:0003954 "NADH dehydrogenase activity" evidence=NAS

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1PWZ9 NDUFA12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 23/36 (63%), Positives = 30/36 (83%)

Query:    40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
             RT+D++ GTLVG DK GNKYYE+   F+GR+RWV+Y
Sbjct:    29 RTNDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVIY 64

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

MGI|MGI:1913664 Ndufa12 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12" [Mus musculus (taxid:10090)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 22/36 (61%), Positives = 29/36 (80%)

Query:    40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
             R +D++ GTLVG DK GNKYYE+   F+GR+RWV+Y
Sbjct:    29 RANDIRIGTLVGEDKYGNKYYEDNKQFFGRHRWVIY 64

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

RGD|1311462 Ndufa12 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12" [Rattus norvegicus (taxid:10116)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 22/36 (61%), Positives = 29/36 (80%)

Query:    40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
             R +D++ GTLVG DK GNKYYE+   F+GR+RWV+Y
Sbjct:    32 RANDIRLGTLVGEDKYGNKYYEDNKQFFGRHRWVIY 67

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA;ISO

GO:0006979 "response to oxidative stress" evidence=IEA;ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|O97725 NDUFA12 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12" [Bos taurus (taxid:9913)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 22/36 (61%), Positives = 29/36 (80%)

Query:    40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
             R +D++ GTLVG DK GNKYYE+   F+GR+RWV+Y
Sbjct:    29 RANDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVIY 64

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|F1SQP4 NDUFA12 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 22/36 (61%), Positives = 29/36 (80%)

Query:    40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVY 75
             R +D++ GTLVG DK GNKYYE+   F+GR+RWV+Y
Sbjct:    31 RANDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVIY 66

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9N2W7	NDUAC_CAEEL	No assigned EC number	0.5581	0.5119	0.2945	yes	N/A
O97725	NDUAC_BOVIN	No assigned EC number	0.6111	0.4285	0.2482	yes	N/A
Q9UI09	NDUAC_HUMAN	No assigned EC number	0.6944	0.4285	0.2482	yes	N/A
Q7TMF3	NDUAC_MOUSE	No assigned EC number	0.6111	0.4285	0.2482	yes	N/A
Q54MV7	NDUAC_DICDI	No assigned EC number	0.7142	0.4166	0.2536	yes	N/A
Q0MQ87	NDUAC_PANTR	No assigned EC number	0.6944	0.4285	0.2482	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	84
pfam05071	100	pfam05071, NDUFA12, NADH ubiquinone oxidoreductase	2e-14
PLN03095	115	PLN03095, PLN03095, NADH:ubiquinone oxidoreductase	4e-11
PLN02732	159	PLN02732, PLN02732, Probable NADH dehydrogenase [u	4e-08
PRK08183	133	PRK08183, PRK08183, NADH dehydrogenase; Validated	3e-06

>gnl|CDD|218414 pfam05071, NDUFA12, NADH ubiquinone oxidoreductase subunit NDUFA12

 Score = 62.3 bits (152), Expect = 2e-14
 Identities = 21/33 (63%), Positives = 24/33 (72%)

Query: 47 GTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKF 79
          GTLVG D+ GNKYYENK    GR RWV+Y+ K 
Sbjct: 1  GTLVGEDEFGNKYYENKDELGGRRRWVIYNGKA 33

This family contains the 17.2 kD subunit of complex I (NDUFA12) and its homologues. The family also contains a second related eukaryotic protein of unknown function, . Length = 100

>gnl|CDD|215571 PLN03095, PLN03095, NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional

 Score = 54.1 bits (130), Expect = 4e-11
 Identities = 21/38 (55%), Positives = 25/38 (65%)

Query: 45 KFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLN 82
          + G LVG D+ GNKYYEN  Y  GR+RWV Y +K   N
Sbjct: 8  RAGRLVGEDEFGNKYYENPSYQSGRHRWVEYADKDDYN 45

Length = 115

>gnl|CDD|215389 PLN02732, PLN02732, Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit

 Score = 46.8 bits (111), Expect = 4e-08
 Identities = 21/32 (65%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 48 TLVGVDKLGNKYYENKH-YFYGRNRWVVYHEK 78
          TLVGVDK GNKYY+      YGR+RWV Y EK
Sbjct: 50 TLVGVDKFGNKYYQKLGDTQYGRHRWVEYAEK 81

Length = 159

>gnl|CDD|236176 PRK08183, PRK08183, NADH dehydrogenase; Validated

 Score = 41.5 bits (98), Expect = 3e-06
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 45 KFGTLVGVDKLGNKYYENK---HYFYGRNRWVVY 75
          + G  VG D+ GN YY  K          RWV+Y
Sbjct: 24 RKGERVGEDEFGNVYYRTKGGKPSDGRERRWVIY 57

Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
KOG3382|consensus	151		99.73
PLN02732	159	Probable NADH dehydrogenase [ubiquinone] 1 alpha s	99.66
PLN03095	115	NADH:ubiquinone oxidoreductase 18 kDa subunit; Pro	99.61
PRK06630	99	hypothetical protein; Provisional	99.56
PRK08183	133	NADH dehydrogenase; Validated	99.54
PF05071	105	NDUFA12: NADH ubiquinone oxidoreductase subunit ND	99.43
COG3761	118	NADH:ubiquinone oxidoreductase 17.2 kD subunit [En	99.14
PF15613	38	WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2	93.84

>KOG3382|consensus

Probab=99.73  E-value=1.4e-18  Score=125.62  Aligned_cols=58  Identities=55%  Similarity=0.898  Sum_probs=54.9

Q ss_pred             cccchhHHHhhhhccCccccceEEeecCCCCEEeeeCCCCCCcccEEEeCCccccccC
Q psy16532         27 RCTDRYDSSESSDRTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKFGLNYD   84 (84)
Q Consensus        27 ~c~~~~~~~~~L~r~~t~k~G~lVG~D~fGNKYYE~~~~~~GRrRWViY~~~~~~~Yd   84 (84)
                      .=||-+.++..|++..+.+.|+|||+|.|||||||++.++.||+|||+|+.+.+|+||
T Consensus        27 e~Gglr~~~~k~yrtd~~kiGTLVG~DkfGNkYyen~~~fygRhRWVeya~kv~~Dyd   84 (151)
T KOG3382|consen   27 EEGGLRCLLDKLYRTDDHKIGTLVGVDKFGNKYYENNDYFYGRHRWVEYASKVNWDYD   84 (151)
T ss_pred             hhccHHHHHHHHHhcccccceeeeeecccccchhcccceecccceeEEeccccccccc
Confidence            3478889999999999999999999999999999999989999999999999999997

>PLN02732 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit

Probab=99.66  E-value=7.7e-17  Score=117.37  Aligned_cols=50  Identities=44%  Similarity=0.645  Sum_probs=45.2

Q ss_pred             chhHHHhhhhccCccc-----------c----ceEEeecCCCCEEeeeCC-CCCCcccEEEeCCcc
Q psy16532         30 DRYDSSESSDRTDDLK-----------F----GTLVGVDKLGNKYYENKH-YFYGRNRWVVYHEKF   79 (84)
Q Consensus        30 ~~~~~~~~L~r~~t~k-----------~----G~lVG~D~fGNKYYE~~~-~~~GRrRWViY~~~~   79 (84)
                      |+.+++++|++++++|           .    |+|||+|+|||||||++. ...||+|||||+++.
T Consensus        17 G~~~~~~~l~~~g~~k~~~~g~t~gt~~~~~~G~lVG~D~~GNkYYE~~~~~~~grrRWV~Y~~~~   82 (159)
T PLN02732         17 GLGGFLRMLREEGYLRCLADGNLLQTKIHNIGATLVGVDKFGNKYYQKLGDTQYGRHRWVEYAEKS   82 (159)
T ss_pred             hHHHHHHHHHHccchhhccCcceeeeEEEeeCcEEEEecCCCCeeeecCCCCCCCceeEEEeCCCc
Confidence            8999999999999977           6    999999999999999985 466899999999864

>PLN03095 NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional

Probab=99.61  E-value=5e-16  Score=108.22  Aligned_cols=40  Identities=50%  Similarity=0.821  Sum_probs=36.2

Q ss_pred             ccCccccceEEeecCCCCEEeeeCCCCCCcccEEEeCCcc
Q psy16532         40 RTDDLKFGTLVGVDKLGNKYYENKHYFYGRNRWVVYHEKF   79 (84)
Q Consensus        40 r~~t~k~G~lVG~D~fGNKYYE~~~~~~GRrRWViY~~~~   79 (84)
                      +++++|.|.|||+|+|||||||++....|++|||||++..
T Consensus         3 ~~~~~r~g~lVG~D~~GNkYYE~~~~~~~rrRWV~Y~~~~   42 (115)
T PLN03095          3 LVLASRAGRLVGEDEFGNKYYENPSYQSGRHRWVEYADKD   42 (115)
T ss_pred             ceeeeecceEeEEcCCCCeeeEcCCCCCCCeEEEEeCCCc
Confidence            4678999999999999999999987777899999999864

>PRK06630 hypothetical protein; Provisional

Probab=99.56  E-value=1.5e-15  Score=104.05  Aligned_cols=40  Identities=30%  Similarity=0.464  Sum_probs=33.7

Q ss_pred             ccCccccceEEeecCCCCEEeeeCC--CCCCcccEEEeCCcc
Q psy16532         40 RTDDLKFGTLVGVDKLGNKYYENKH--YFYGRNRWVVYHEKF   79 (84)
Q Consensus        40 r~~t~k~G~lVG~D~fGNKYYE~~~--~~~GRrRWViY~~~~   79 (84)
                      .+++++.|+|||+|+|||+|||+..  ...+++|||||++..
T Consensus         6 ~~~t~r~G~lVG~D~~GNkYYE~~~~~~~gr~rRWViY~g~~   47 (99)
T PRK06630          6 KFFITFFHKKVGEDEFLNQYYESRNIDYLGRPRRFVIYKNVN   47 (99)
T ss_pred             hhhhhccCeEeEEeCCCChhcccCCCccCCCceEEEEeCCCC
Confidence            5788999999999999999999964  333569999999854

>PRK08183 NADH dehydrogenase; Validated

Probab=99.54  E-value=3.7e-15  Score=105.74  Aligned_cols=52  Identities=27%  Similarity=0.390  Sum_probs=41.7

Q ss_pred             ccchhHHHhhhhccCccccceEEeecCCCCEEeeeCCC---CCCcccEEEeCCcc
Q psy16532         28 CTDRYDSSESSDRTDDLKFGTLVGVDKLGNKYYENKHY---FYGRNRWVVYHEKF   79 (84)
Q Consensus        28 c~~~~~~~~~L~r~~t~k~G~lVG~D~fGNKYYE~~~~---~~GRrRWViY~~~~   79 (84)
                      -++||....--.+++++|.|+|||+|++||||||+++.   ..+++|||+|++..
T Consensus         7 if~ww~g~t~~t~~~~~r~g~lVG~D~~GNkYYE~~~~~~~~~~~rRWV~Y~~~~   61 (133)
T PRK08183          7 IFTWWNGQTLGTRFFTWRKGERVGEDEFGNVYYRTKGGKPSDGRERRWVIYNGYA   61 (133)
T ss_pred             HHHHhccCchhheeehhccCeEeEecCCCCeeeecCCccccCCCceEEEEeCCCC
Confidence            35666665555678899999999999999999999873   34579999999854

>PF05071 NDUFA12: NADH ubiquinone oxidoreductase subunit NDUFA12; InterPro: IPR007763 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=99.43  E-value=1.2e-13  Score=93.05  Aligned_cols=33  Identities=58%  Similarity=0.900  Sum_probs=29.5

Q ss_pred             ceEEeecCCCCEEeeeC-CCCCCcccEEEeCCcc
Q psy16532         47 GTLVGVDKLGNKYYENK-HYFYGRNRWVVYHEKF   79 (84)
Q Consensus        47 G~lVG~D~fGNKYYE~~-~~~~GRrRWViY~~~~   79 (84)
                      |+|||+|+|||+|||++ ....+++|||+|++..
T Consensus         1 G~lVG~D~~GN~YyE~~~~~~~~~rRwV~y~~~~   34 (105)
T PF05071_consen    1 GTLVGTDEFGNKYYENPRDEQGRRRRWVEYAGKS   34 (105)
T ss_pred             CCEeeEeCCCCEEEeecCCCcCCCcEEEEcCCcc
Confidence            78999999999999999 4566789999999876

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. this entry represents the 17.2kDa subunit from NADH:ubiquinone oxidoreductase and its homologues []. This subunit is believed to be one of the 36 structural complex I proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0009055 electron carrier activity, 0016020 membrane

>COG3761 NADH:ubiquinone oxidoreductase 17

Probab=99.14  E-value=1.4e-11  Score=86.39  Aligned_cols=36  Identities=42%  Similarity=0.749  Sum_probs=30.0

Q ss_pred             ccceEEeecCCCCEEeee-CCCCCCc-ccEEEeCCccc
Q psy16532         45 KFGTLVGVDKLGNKYYEN-KHYFYGR-NRWVVYHEKFG   80 (84)
Q Consensus        45 k~G~lVG~D~fGNKYYE~-~~~~~GR-rRWViY~~~~~   80 (84)
                      ++-+.||+|+|||.|||. .....|| ||||||++.++
T Consensus        11 rfh~kvGeDefgN~Yye~r~~ds~gr~RRwVIYngyaE   48 (118)
T COG3761          11 RFHKKVGEDEFGNVYYEGRNIDSEGRTRRWVIYNGYAE   48 (118)
T ss_pred             HHHHhccchhccceeeeccCCccCCCeeeEEEEcCcch
Confidence            345899999999999998 4456676 99999999765

2 kD subunit [Energy production and conversion]

>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2

Probab=93.84  E-value=0.029  Score=32.51  Aligned_cols=15  Identities=33%  Similarity=0.656  Sum_probs=13.2

Q ss_pred             eEEeecCCCCEEeee
Q psy16532         48 TLVGVDKLGNKYYEN   62 (84)
Q Consensus        48 ~lVG~D~fGNKYYE~   62 (84)
                      +.+|.|.+||+||--
T Consensus         3 ~pLG~DR~~NrYwwf   17 (38)
T PF15613_consen    3 KPLGKDRYGNRYWWF   17 (38)
T ss_pred             ccccccCCCceEEEE
Confidence            568999999999974

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00