Psyllid ID: psy16535

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
VQLTHWTLDLEIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIITYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSGEQMAIKEGVKLPNREVCELCGFLSSQKICKACSLLEGLNKGLPKLSLSKRSVQDRIRQENYSKVQSITGYRDDSLETVKQNKEDYQMDLKILSYDELYGWTMDAIVNQGIGPRSPACKERSDHYAMGADMKSFKIQE
cccccEEEEcccccHHHHHHHHHHHHcccccEEEEEEccccccccccccHHHHHHHHccccEEEEEEEEcccHHHHHcccccccccHHHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccEEEEEEHHHHcccHHHHHHHHccccccccccHHHHHHHccccccccccc
ccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHcHHHccccEEEEEHHHHccccHHHHHHccHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHccccccccccccccEcccccccHHHHHHHHHHHHHHccccccccccccccHHHHcccccccccccccccccHHHHHHHHHHccccEEEEEHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHccccEEcc
VQLTHWTldleigrknnctfcGVFRRQALDRGAAMLGVDcvatghnaddtddIAETVLMNVLRGDIARLQRCTDIitigrknnctfcgVFRRQALDRGAAMLGVDcvatghnadDIAETVLMNVLRGDIARLQRCTDIITYAYEKEIVMYAYYKKLVYFStecifapnayrGHARTFLKHLEKIRPASIMDIIHSGEQMAikegvklpnrevcelcgflssqkICKACSLLeglnkglpklslskrsvqDRIRQENYSKVqsitgyrddsleTVKQNKEDYQMDLKILSYDELYGWTMDAIVnqgigprspackersdhyamgadmksfkiqe
vqlthwtldleigrknnCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIitigrknnctfCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIITYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSGEQMAIKEGVKLPNREVCELCGFLSSQKICKACSLLEGlnkglpklslskrsvqdrirqenyskvqsitgyrddsletvKQNKEDYQMDLKILSYDELYGWTMDAIVNQGIGPRSPACKERSDHyamgadmksfkiqe
VQLTHWTLDLEIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIITYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSGEQMAIKEGVKLPNREVCELCGFLSSQKICKACSLLEGLNKGLPKLSLSKRSVQDRIRQENYSKVQSITGYRDDSLETVKQNKEDYQMDLKILSYDELYGWTMDAIVNQGIGPRSPACKERSDHYAMGADMKSFKIQE
***THWTLDLEIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIITYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSGEQMAIKEGVKLPNREVCELCGFLSSQKICKACSLLEGLNKGL*****************************************DYQMDLKILSYDELYGWTMDAIVNQGI***************************
*QLTHWTLDLEIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIITYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSGEQMAIK*GV*LPNREVCELCGFLSSQKICKACSLLEG*************************************LETVKQNKEDYQMDLKILSYDELYGWTMDAIVNQGIGPRSPACKERSDHYAMGADMKSFK***
VQLTHWTLDLEIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIITYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSGEQMAIKEGVKLPNREVCELCGFLSSQKICKACSLLEGLNKGLPKLSLSKRSVQDRIRQENYSKVQSITGYRDDSLETVKQNKEDYQMDLKILSYDELYGWTMDAIVNQGIGPRSPACKERSDHYAMGADMKSFKIQE
VQLTHWTLDLEIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIITYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSGEQMAIKEGVKLPNREVCELCGFLSSQKICKACSLLEGLNKGLPKLSL*******************ITGYRDDSLETVKQNKEDYQMDLKILSYDELYGWTMDAIVNQGIGPRSPACKERSDHYAMGADMKSFKI**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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VQLTHWTLDLEIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDTDDIAETVLMNVLRGDIARLQRCTDIITIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIITYAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKIRPASIMDIIHSGEQMAIKEGVKLPNREVCELCGFLSSQKICKACSLLEGLNKGLPKLSLSKRSVQDRIRQENYSKVQSITGYRDDSLETVKQNKEDYQMDLKILSYDELYGWTMDAIVNQGIGPRSPACKERSDHYAMGADMKSFKIQE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query333 2.2.26 [Sep-21-2011]
B3MI77343 Cytoplasmic tRNA 2-thiola N/A N/A 0.534 0.518 0.697 8e-75
B4KLL0343 Cytoplasmic tRNA 2-thiola N/A N/A 0.534 0.518 0.703 8e-75
B4LM02343 Cytoplasmic tRNA 2-thiola N/A N/A 0.534 0.518 0.697 1e-74
B4J5B3343 Cytoplasmic tRNA 2-thiola N/A N/A 0.546 0.530 0.685 2e-74
B3N7L9343 Cytoplasmic tRNA 2-thiola N/A N/A 0.534 0.518 0.692 4e-74
Q7JWW5343 Cytoplasmic tRNA 2-thiola yes N/A 0.534 0.518 0.692 7e-74
Q16QI1341 Cytoplasmic tRNA 2-thiola N/A N/A 0.576 0.563 0.661 1e-73
B4HSL7343 Cytoplasmic tRNA 2-thiola N/A N/A 0.534 0.518 0.687 1e-73
B4P3W7343 Cytoplasmic tRNA 2-thiola N/A N/A 0.534 0.518 0.692 2e-73
Q7Q9I4342 Cytoplasmic tRNA 2-thiola yes N/A 0.534 0.520 0.683 2e-73
>sp|B3MI77|CTU1_DROAN Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila ananassae GN=GF12710 PE=3 SV=1 Back     alignment and function desciption
 Score =  280 bits (717), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 134/192 (69%), Positives = 154/192 (80%), Gaps = 14/192 (7%)

Query: 75  IITIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQR 134
           +  IGR NNCTFCGVFRRQALDRGA +LGVD +ATGHNADDIAETVLMN+LRGD ARL+R
Sbjct: 131 VAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSIATGHNADDIAETVLMNILRGDTARLRR 190

Query: 135 CTDIIT--------------YAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKH 180
           CTDI T              Y+YEKEIVMYA+YKKLVYFSTEC+FAPNAYRGHAR FLK 
Sbjct: 191 CTDIKTGGGEDSIPRVKPLKYSYEKEIVMYAHYKKLVYFSTECVFAPNAYRGHARAFLKD 250

Query: 181 LEKIRPASIMDIIHSGEQMAIKEGVKLPNREVCELCGFLSSQKICKACSLLEGLNKGLPK 240
           LEK+RP+ IMDII+SGEQ+  K+ VK P R +C  CGF+SSQ+ CKAC LLEGLN+GLPK
Sbjct: 251 LEKVRPSVIMDIIYSGEQLRFKDTVKKPVRGICTRCGFVSSQQPCKACVLLEGLNRGLPK 310

Query: 241 LSLSKRSVQDRI 252
           L + K+S  DR+
Sbjct: 311 LGIGKKSKGDRM 322
Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.
Drosophila ananassae (taxid: 7217)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: -
>sp|B4KLL0|CTU1_DROMO Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila mojavensis GN=GI19452 PE=3 SV=1 Back     alignment and function description
>sp|B4LM02|CTU1_DROVI Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila virilis GN=GJ21203 PE=3 SV=1 Back     alignment and function description
>sp|B4J5B3|CTU1_DROGR Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila grimshawi GN=GH20281 PE=3 SV=1 Back     alignment and function description
>sp|B3N7L9|CTU1_DROER Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila erecta GN=GG10584 PE=3 SV=1 Back     alignment and function description
>sp|Q7JWW5|CTU1_DROME Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila melanogaster GN=CG8078 PE=1 SV=1 Back     alignment and function description
>sp|Q16QI1|CTU1_AEDAE Cytoplasmic tRNA 2-thiolation protein 1 OS=Aedes aegypti GN=AAEL011283 PE=3 SV=1 Back     alignment and function description
>sp|B4HSL7|CTU1_DROSE Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila sechellia GN=GM20632 PE=3 SV=1 Back     alignment and function description
>sp|B4P3W7|CTU1_DROYA Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila yakuba GN=GE22576 PE=3 SV=1 Back     alignment and function description
>sp|Q7Q9I4|CTU1_ANOGA Cytoplasmic tRNA 2-thiolation protein 1 OS=Anopheles gambiae GN=AGAP005220 PE=3 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
383857002349 PREDICTED: cytoplasmic tRNA 2-thiolation 0.540 0.515 0.720 1e-77
66505934343 PREDICTED: cytoplasmic tRNA 2-thiolation 0.561 0.545 0.681 2e-77
380030456343 PREDICTED: cytoplasmic tRNA 2-thiolation 0.561 0.545 0.685 2e-77
332019893339 Cytoplasmic tRNA 2-thiolation protein 1 0.567 0.557 0.697 3e-77
307175621336 ATP-binding domain-containing protein 3 0.534 0.529 0.717 3e-76
307209204340 ATP-binding domain-containing protein 3 0.534 0.523 0.722 5e-76
350398712343 PREDICTED: cytoplasmic tRNA 2-thiolation 0.534 0.518 0.706 3e-75
340712086343 PREDICTED: cytoplasmic tRNA 2-thiolation 0.534 0.518 0.706 4e-75
239789230333 ACYPI006714 [Acyrthosiphon pisum] 0.531 0.531 0.715 1e-74
193645837333 PREDICTED: cytoplasmic tRNA 2-thiolation 0.531 0.531 0.715 2e-74
>gi|383857002|ref|XP_003703995.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 139/193 (72%), Positives = 158/193 (81%), Gaps = 13/193 (6%)

Query: 78  IGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTD 137
           IGRKNNCTFCGVFRRQALDRGAAML VDC+ATGHNADDIAETV+MN+LRGDI+RLQRCT 
Sbjct: 134 IGRKNNCTFCGVFRRQALDRGAAMLNVDCIATGHNADDIAETVIMNILRGDISRLQRCTS 193

Query: 138 IIT-------------YAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKHLEKI 184
           IIT             YAYEKEIVMYAY+K LVYFSTEC+FAPNAYRGHARTFLK LEKI
Sbjct: 194 IITAGADCIKRCKPLKYAYEKEIVMYAYFKHLVYFSTECVFAPNAYRGHARTFLKDLEKI 253

Query: 185 RPASIMDIIHSGEQMAIKEGVKLPNREVCELCGFLSSQKICKACSLLEGLNKGLPKLSLS 244
           RP+SI+DIIHSGE M +K+ +K+P R  C  CGF+SSQ+ICKAC +LEGLN+GLPKL + 
Sbjct: 254 RPSSILDIIHSGETMQVKDTIKMPERRTCSRCGFVSSQEICKACIMLEGLNRGLPKLGIG 313

Query: 245 KRSVQDRIRQENY 257
           K +   RI   N+
Sbjct: 314 KSTKVKRIMDSNF 326

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|66505934|ref|XP_397328.2| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380030456|ref|XP_003698864.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Apis florea] Back     alignment and taxonomy information
>gi|332019893|gb|EGI60354.1| Cytoplasmic tRNA 2-thiolation protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307175621|gb|EFN65530.1| ATP-binding domain-containing protein 3 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|307209204|gb|EFN86311.1| ATP-binding domain-containing protein 3 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|350398712|ref|XP_003485283.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340712086|ref|XP_003394595.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|239789230|dbj|BAH71252.1| ACYPI006714 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|193645837|ref|XP_001944809.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
UNIPROTKB|B4LM02343 GJ21203 "Cytoplasmic tRNA 2-th 0.546 0.530 0.690 4.4e-68
UNIPROTKB|B3MI77343 GF12710 "Cytoplasmic tRNA 2-th 0.546 0.530 0.690 4.4e-68
UNIPROTKB|B4KLL0343 GI19452 "Cytoplasmic tRNA 2-th 0.546 0.530 0.695 4.4e-68
UNIPROTKB|B4J5B3343 GH20281 "Cytoplasmic tRNA 2-th 0.546 0.530 0.685 7.2e-68
UNIPROTKB|B3N7L9343 GG10584 "Cytoplasmic tRNA 2-th 0.534 0.518 0.692 3.1e-67
FB|FBgn0033375343 CG8078 [Drosophila melanogaste 0.546 0.530 0.685 4e-67
UNIPROTKB|B4HSL7343 GM20632 "Cytoplasmic tRNA 2-th 0.546 0.530 0.680 8.2e-67
UNIPROTKB|Q16QI1341 AAEL011283 "Cytoplasmic tRNA 2 0.576 0.563 0.661 8.2e-67
UNIPROTKB|B4NN33343 GK22963 "Cytoplasmic tRNA 2-th 0.546 0.530 0.680 8.2e-67
UNIPROTKB|B4P3W7343 GE22576 "Cytoplasmic tRNA 2-th 0.534 0.518 0.692 1.1e-66
UNIPROTKB|B4LM02 GJ21203 "Cytoplasmic tRNA 2-thiolation protein 1" [Drosophila virilis (taxid:7244)] Back     alignment and assigned GO terms
 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 136/197 (69%), Positives = 157/197 (79%)

Query:    75 IITIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQR 134
             +  IGR NNCTFCGVFRRQALDRGA +LGVD +ATGHNADDIAETVLMN+LRGD ARL+R
Sbjct:   131 VAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSIATGHNADDIAETVLMNILRGDTARLRR 190

Query:   135 CTDIIT--------------YAYEKEIVMYAYYKKLVYFSTECIFAPNAYRGHARTFLKH 180
             CTDI T              Y+YEKEIVMYA+YKKLVYFSTEC+FAPNAYRGHAR FLK 
Sbjct:   191 CTDIRTGGSEDSIPRVKPLKYSYEKEIVMYAHYKKLVYFSTECVFAPNAYRGHARAFLKD 250

Query:   181 LEKIRPASIMDIIHSGEQMAIKEGVKLPNREVCELCGFLSSQKICKACSLLEGLNKGLPK 240
             LEK+RP+ IMDII+SGEQ+  K+ VK P R +CE C F+SSQ+ CKAC LLEGLN+GLPK
Sbjct:   251 LEKVRPSVIMDIIYSGEQLRFKDTVKKPVRGICERCSFVSSQQPCKACVLLEGLNRGLPK 310

Query:   241 LSLSKRSVQDR-IRQEN 256
             L + K+S  DR I ++N
Sbjct:   311 LGIGKKSKGDRMIAKQN 327
GO:0000049 "tRNA binding" evidence=ISS
GO:0002098 "tRNA wobble uridine modification" evidence=ISS
GO:0005829 "cytosol" evidence=ISS
GO:0034227 "tRNA thio-modification" evidence=ISS
UNIPROTKB|B3MI77 GF12710 "Cytoplasmic tRNA 2-thiolation protein 1" [Drosophila ananassae (taxid:7217)] Back     alignment and assigned GO terms
UNIPROTKB|B4KLL0 GI19452 "Cytoplasmic tRNA 2-thiolation protein 1" [Drosophila mojavensis (taxid:7230)] Back     alignment and assigned GO terms
UNIPROTKB|B4J5B3 GH20281 "Cytoplasmic tRNA 2-thiolation protein 1" [Drosophila grimshawi (taxid:7222)] Back     alignment and assigned GO terms
UNIPROTKB|B3N7L9 GG10584 "Cytoplasmic tRNA 2-thiolation protein 1" [Drosophila erecta (taxid:7220)] Back     alignment and assigned GO terms
FB|FBgn0033375 CG8078 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|B4HSL7 GM20632 "Cytoplasmic tRNA 2-thiolation protein 1" [Drosophila sechellia (taxid:7238)] Back     alignment and assigned GO terms
UNIPROTKB|Q16QI1 AAEL011283 "Cytoplasmic tRNA 2-thiolation protein 1" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
UNIPROTKB|B4NN33 GK22963 "Cytoplasmic tRNA 2-thiolation protein 1" [Drosophila willistoni (taxid:7260)] Back     alignment and assigned GO terms
UNIPROTKB|B4P3W7 GE22576 "Cytoplasmic tRNA 2-thiolation protein 1" [Drosophila yakuba (taxid:7245)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94480CTU1_DICDI2, ., 7, ., 7, ., -0.62700.51350.475yesN/A
O76365CTU1_CAEEL2, ., 7, ., 7, ., -0.57950.48940.4369yesN/A
O64862CTU1_ARATH2, ., 7, ., 7, ., -0.65740.50450.4732yesN/A
P0CS70CTU1_CRYNJ2, ., 7, ., 7, ., -0.62980.49840.4573yesN/A
Q5FW05CTU1_XENTR2, ., 7, ., 7, ., -0.69830.49840.4868yesN/A
P53088CTU1_YEAST2, ., 7, ., 7, ., -0.520.53150.4930yesN/A
Q6Z6G6CTU1_ORYSJ2, ., 7, ., 7, ., -0.64510.51650.4738yesN/A
Q6FMB5CTU1_CANGA2, ., 7, ., 7, ., -0.56250.51050.4748yesN/A
Q6CWX6CTU1_KLULA2, ., 7, ., 7, ., -0.52880.51650.4636yesN/A
Q803X1CTU1_DANRE2, ., 7, ., 7, ., -0.67210.50450.4897yesN/A
A2Q879CTU1_ASPNC2, ., 7, ., 7, ., -0.59010.50750.4956yesN/A
Q755T1CTU1_ASHGO2, ., 7, ., 7, ., -0.51450.49240.4396yesN/A
Q7JWW5CTU1_DROME2, ., 7, ., 7, ., -0.69270.53450.5189yesN/A
O94282CTU1_SCHPO2, ., 7, ., 7, ., -0.59450.50750.5044yesN/A
Q28ZC1CTU1_DROPS2, ., 7, ., 7, ., -0.69270.53450.5189yesN/A
Q7Q9I4CTU1_ANOGA2, ., 7, ., 7, ., -0.68390.53450.5204yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
cd01993185 cd01993, Alpha_ANH_like_II, This is a subfamily of 2e-39
COG0037298 COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [C 4e-26
cd01993185 cd01993, Alpha_ANH_like_II, This is a subfamily of 3e-25
TIGR00269104 TIGR00269, TIGR00269, TIGR00269 family protein 1e-12
cd01992185 cd01992, PP-ATPase, N-terminal domain of predicted 1e-08
TIGR02432189 TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine syn 2e-07
cd01992185 cd01992, PP-ATPase, N-terminal domain of predicted 7e-07
pfam01171182 pfam01171, ATP_bind_3, PP-loop family 2e-06
TIGR02432189 TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine syn 1e-05
PRK10696258 PRK10696, PRK10696, tRNA 2-thiocytidine biosynthes 7e-05
pfam01171182 pfam01171, ATP_bind_3, PP-loop family 1e-04
cd0198486 cd01984, AANH_like, Adenine nucleotide alpha hydro 3e-04
cd01993185 cd01993, Alpha_ANH_like_II, This is a subfamily of 0.001
>gnl|CDD|238951 cd01993, Alpha_ANH_like_II, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information 
 Score =  137 bits (347), Expect = 2e-39
 Identities = 48/106 (45%), Positives = 59/106 (55%), Gaps = 13/106 (12%)

Query: 77  TIGRKNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCT 136
             G K+ C+ CGV RR  L++ A  LG D +ATGHN DD AET+LMN+LRG I RL R  
Sbjct: 80  KRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAETLLMNLLRGGILRLMRPG 139

Query: 137 DIIT-------------YAYEKEIVMYAYYKKLVYFSTECIFAPNA 169
            I+              Y  EKEIV+YA    L +   EC +A NA
Sbjct: 140 PILYLDEGDVTRIRPLVYVREKEIVLYAELNGLPFVEEECPYAGNA 185

Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus. Length = 185
>gnl|CDD|223115 COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>gnl|CDD|238951 cd01993, Alpha_ANH_like_II, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>gnl|CDD|129370 TIGR00269, TIGR00269, TIGR00269 family protein Back     alignment and domain information
>gnl|CDD|238950 cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233864 TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>gnl|CDD|238950 cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|216343 pfam01171, ATP_bind_3, PP-loop family Back     alignment and domain information
>gnl|CDD|233864 TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>gnl|CDD|236737 PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>gnl|CDD|216343 pfam01171, ATP_bind_3, PP-loop family Back     alignment and domain information
>gnl|CDD|238942 cd01984, AANH_like, Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>gnl|CDD|238951 cd01993, Alpha_ANH_like_II, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 333
PRK10660436 tilS tRNA(Ile)-lysidine synthetase; Provisional 100.0
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 99.96
COG0037298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 99.95
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 99.93
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 99.86
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 99.83
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 99.77
KOG2840|consensus347 99.61
TIGR00269104 conserved hypothetical protein TIGR00269. 99.55
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 99.45
PRK08349198 hypothetical protein; Validated 99.43
PRK00143346 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed 99.42
COG0037298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 99.26
cd01998349 tRNA_Me_trans tRNA methyl transferase. This family 99.08
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 99.08
PRK10660436 tilS tRNA(Ile)-lysidine synthetase; Provisional 99.05
cd01990202 Alpha_ANH_like_I This is a subfamily of Adenine nu 99.01
cd01712177 ThiI ThiI is required for thiazole synthesis in th 98.89
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 98.86
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 98.84
PRK00074511 guaA GMP synthase; Reviewed 98.83
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 98.83
cd01997295 GMP_synthase_C The C-terminal domain of GMP synthe 98.78
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 98.77
PRK13820394 argininosuccinate synthase; Provisional 98.76
PRK14665360 mnmA tRNA-specific 2-thiouridylase MnmA; Provision 98.72
TIGR00420352 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me 98.66
PRK14561194 hypothetical protein; Provisional 98.62
PRK14664362 tRNA-specific 2-thiouridylase MnmA; Provisional 98.62
TIGR00342371 thiazole biosynthesis/tRNA modification protein Th 98.57
cd01713173 PAPS_reductase This domain is found in phosphoaden 98.42
PRK01269482 tRNA s(4)U8 sulfurtransferase; Provisional 98.39
PRK08384381 thiamine biosynthesis protein ThiI; Provisional 98.36
cd01986103 Alpha_ANH_like Adenine nucleotide alpha hydrolases 98.33
TIGR00884311 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C 98.31
PRK00919307 GMP synthase subunit B; Validated 98.3
cd01995169 ExsB ExsB is a transcription regulator related pro 98.16
TIGR00364201 exsB protein. This protein family is represented b 98.12
KOG2594|consensus396 98.05
PRK05253301 sulfate adenylyltransferase subunit 2; Provisional 97.95
PRK00509399 argininosuccinate synthase; Provisional 97.89
TIGR00032394 argG argininosuccinate synthase. argG in bacteria, 97.86
PRK01565394 thiamine biosynthesis protein ThiI; Provisional 97.81
TIGR00552250 nadE NAD+ synthetase. NAD+ synthetase is a nearly 97.74
PF03054356 tRNA_Me_trans: tRNA methyl transferase; InterPro: 97.73
KOG2840|consensus347 97.69
PRK08349198 hypothetical protein; Validated 97.65
cd01999385 Argininosuccinate_Synthase Argininosuccinate synth 97.55
COG1606269 ATP-utilizing enzymes of the PP-loop superfamily [ 97.44
cd01712177 ThiI ThiI is required for thiazole synthesis in th 97.33
TIGR02039294 CysD sulfate adenylyltransferase, small subunit. I 97.26
PRK00143346 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed 97.25
COG0482356 TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid 97.2
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 97.19
PF0917969 TilS: TilS substrate binding domain; InterPro: IPR 97.09
PLN00200404 argininosuccinate synthase; Provisional 97.05
PRK04527400 argininosuccinate synthase; Provisional 96.85
PRK08576438 hypothetical protein; Provisional 96.74
PRK08384381 thiamine biosynthesis protein ThiI; Provisional 96.68
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 96.59
cd01997295 GMP_synthase_C The C-terminal domain of GMP synthe 96.59
cd01996154 Alpha_ANH_like_III This is a subfamily of Adenine 96.55
cd01986103 Alpha_ANH_like Adenine nucleotide alpha hydrolases 96.41
PRK00074511 guaA GMP synthase; Reviewed 96.35
PF02568197 ThiI: Thiamine biosynthesis protein (ThiI); InterP 96.28
PRK13820394 argininosuccinate synthase; Provisional 96.26
cd01990202 Alpha_ANH_like_I This is a subfamily of Adenine nu 96.16
cd01998349 tRNA_Me_trans tRNA methyl transferase. This family 96.13
PRK02090241 phosphoadenosine phosphosulfate reductase; Provisi 95.9
PRK14665360 mnmA tRNA-specific 2-thiouridylase MnmA; Provision 95.89
PRK14561194 hypothetical protein; Provisional 95.44
PRK00919307 GMP synthase subunit B; Validated 95.34
PRK14664362 tRNA-specific 2-thiouridylase MnmA; Provisional 95.23
TIGR00342371 thiazole biosynthesis/tRNA modification protein Th 95.19
PF10288107 DUF2392: Protein of unknown function (DUF2392); In 95.1
TIGR03573343 WbuX N-acetyl sugar amidotransferase. This enzyme 95.08
TIGR00420352 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me 95.04
PRK12563312 sulfate adenylyltransferase subunit 2; Provisional 94.81
cd00553248 NAD_synthase NAD+ synthase is a homodimer, which c 94.69
TIGR00884311 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C 94.48
PLN02347536 GMP synthetase 93.92
PRK01565394 thiamine biosynthesis protein ThiI; Provisional 92.47
PRK05370447 argininosuccinate synthase; Validated 91.96
cd01713173 PAPS_reductase This domain is found in phosphoaden 91.78
cd01996154 Alpha_ANH_like_III This is a subfamily of Adenine 91.62
PF00764388 Arginosuc_synth: Arginosuccinate synthase; InterPr 91.39
PRK13980265 NAD synthetase; Provisional 91.37
COG0301383 ThiI Thiamine biosynthesis ATP pyrophosphatase [Co 91.33
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 91.25
PRK11106231 queuosine biosynthesis protein QueC; Provisional 90.93
KOG2805|consensus377 90.38
TIGR00552250 nadE NAD+ synthetase. NAD+ synthetase is a nearly 90.03
COG1606269 ATP-utilizing enzymes of the PP-loop superfamily [ 88.4
PRK00509399 argininosuccinate synthase; Provisional 87.34
cd01995169 ExsB ExsB is a transcription regulator related pro 85.89
TIGR00032394 argG argininosuccinate synthase. argG in bacteria, 84.9
COG0137403 ArgG Argininosuccinate synthase [Amino acid transp 84.65
PRK01269482 tRNA s(4)U8 sulfurtransferase; Provisional 84.02
PRK05253301 sulfate adenylyltransferase subunit 2; Provisional 82.55
TIGR00364201 exsB protein. This protein family is represented b 82.41
COG0482356 TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid 80.98
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.2e-33  Score=277.81  Aligned_cols=266  Identities=14%  Similarity=0.015  Sum_probs=200.6

Q ss_pred             chHhhHHHHHHHHHHHHHH-HhcC--CCEEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhhcCCCccchhhhhH
Q psy16535         15 KNNCTFCGVFRRQALDRGA-AMLG--VDCVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIITIGRKNNCTFCGVF   90 (333)
Q Consensus        15 ~~~~~~~~~~r~~~L~~~~-~~~g--~~~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~~~~~~~~~~cr~~   90 (333)
                      .+..|.+...   +|..+. ...|  +.+++++|++++++|.++.|+.++|+ .++|+.+...++.. ...+.+++||..
T Consensus        24 GG~DS~~Ll~---~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~~~~-~~~~~e~~AR~~   99 (436)
T PRK10660         24 GGLDSTVLLH---LLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQLDQ-RGLGIEAAARQA   99 (436)
T ss_pred             CCHHHHHHHH---HHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEeccC-CCCCHHHHHHHH
Confidence            3455555433   444443 2234  44677899999888899999999999 88998776655431 234689999999


Q ss_pred             HHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc-ccccCC--------cccc---ccCHHHHHHHHHHcCCCc
Q psy16535         91 RRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA-RLQRCT--------DIIT---YAYEKEIVMYAYYKKLVY  158 (333)
Q Consensus        91 Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~L~~~~--------~iiR---~i~k~EI~~y~~~~~l~~  158 (333)
                      ||.+|.+.+...  ++|++|||+||++||||||++||+|. ||++|.        .++|   .++|+||..||+.+|++|
T Consensus       100 Ry~~~~~~~~~~--~~l~~aHh~DDq~ET~L~~L~rG~g~~gL~gm~~~~~~~~~~liRPLL~~~k~ei~~ya~~~~l~~  177 (436)
T PRK10660        100 RYQAFARTLLPG--EVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSPFAGTRLIRPLLARSREELEQYAQAHGLRW  177 (436)
T ss_pred             HHHHHHHHHHhC--CEEEEcCchHHHHHHHHHHHHcCCChhhccccceecccCCCcEeCCCccCCHHHHHHHHHHcCCCE
Confidence            999999999874  59999999999999999999999986 787763        3677   899999999999999999


Q ss_pred             eecCCCCCCchhHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHhccCCCc-hhhhhhhcCcchhhhhhHHhhHHHHhc
Q psy16535        159 FSTECIFAPNAYRGHART-FLKHLEKIRPASIMDIIHSGEQMAIKEGVKLPN-REVCELCGFLSSQKICKACSLLEGLNK  236 (333)
Q Consensus       159 ~~D~~n~~~~~~Rn~iR~-~lp~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~ic~~c~l~~~~~~  236 (333)
                      ++|+||.++.|.||+||+ ++|.|++.||++..+++++++.++++++++++. ......+.....       .+....+.
T Consensus       178 ~~D~sN~~~~~~RN~iR~~vlP~L~~~~p~~~~~l~r~a~~~~~~~~~l~~~~~~~~~~~~~~~~-------~l~~~~l~  250 (436)
T PRK10660        178 IEDDSNQDDRYDRNFLRLRVLPLLQQRWPHFAEATARSAALCAEQEQLLDELLAEDLAHLQTPDG-------TLSIDPLL  250 (436)
T ss_pred             EECCCCCCCccccHHHHHHhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------cCcHHHHh
Confidence            999999999999999998 999999999999999999999999887765432 222222221111       13334567


Q ss_pred             cCCcccccHHHHHHHHHHhhcCCCCCCChHHHHHHHHHh-hC--CCCCeeecCC----cccceeeeec
Q psy16535        237 GLPKLSLSKRSVQDRIRQENYSKVQSITGYRDDSLETVK-QN--KEDYQMDLKI----LSYDELYGWT  297 (333)
Q Consensus       237 ~l~~~~~~~~r~i~~~l~~~~~~~~~~s~~hi~~i~~ll-~~--~~g~~i~Lp~----~~y~~l~~~~  297 (333)
                      .+|++.  |+++++.|+....  ....+..+++++...+ ..  .++..+.+.+    +.|+.+++++
T Consensus       251 ~l~~~~--~~~ll~~~l~~~~--~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  314 (436)
T PRK10660        251 AMSDAR--RAAILRRWLAGQG--APMPSRDQLQRIWQEVALAREDAEPCLRLGAFEIRRYQSQLWLIK  314 (436)
T ss_pred             hCCHHH--HHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHhhccccCCeEEECCEEEEEECCEEEEee
Confidence            889988  9999999987642  2345667777766544 22  2233444442    5788898875

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>KOG2840|consensus Back     alignment and domain information
>TIGR00269 conserved hypothetical protein TIGR00269 Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>PRK08349 hypothetical protein; Validated Back     alignment and domain information
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd01998 tRNA_Me_trans tRNA methyl transferase Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional Back     alignment and domain information
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>PRK00074 guaA GMP synthase; Reviewed Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Back     alignment and domain information
>PRK14561 hypothetical protein; Provisional Back     alignment and domain information
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI Back     alignment and domain information
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase Back     alignment and domain information
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional Back     alignment and domain information
>PRK08384 thiamine biosynthesis protein ThiI; Provisional Back     alignment and domain information
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases Back     alignment and domain information
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit Back     alignment and domain information
>PRK00919 GMP synthase subunit B; Validated Back     alignment and domain information
>cd01995 ExsB ExsB is a transcription regulator related protein Back     alignment and domain information
>TIGR00364 exsB protein Back     alignment and domain information
>KOG2594|consensus Back     alignment and domain information
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>PRK00509 argininosuccinate synthase; Provisional Back     alignment and domain information
>TIGR00032 argG argininosuccinate synthase Back     alignment and domain information
>PRK01565 thiamine biosynthesis protein ThiI; Provisional Back     alignment and domain information
>TIGR00552 nadE NAD+ synthetase Back     alignment and domain information
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 Back     alignment and domain information
>KOG2840|consensus Back     alignment and domain information
>PRK08349 hypothetical protein; Validated Back     alignment and domain information
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase Back     alignment and domain information
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only] Back     alignment and domain information
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway Back     alignment and domain information
>TIGR02039 CysD sulfate adenylyltransferase, small subunit Back     alignment and domain information
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed Back     alignment and domain information
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>PF09179 TilS: TilS substrate binding domain; InterPro: IPR015262 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN00200 argininosuccinate synthase; Provisional Back     alignment and domain information
>PRK04527 argininosuccinate synthase; Provisional Back     alignment and domain information
>PRK08576 hypothetical protein; Provisional Back     alignment and domain information
>PRK08384 thiamine biosynthesis protein ThiI; Provisional Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase Back     alignment and domain information
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases Back     alignment and domain information
>PRK00074 guaA GMP synthase; Reviewed Back     alignment and domain information
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>cd01998 tRNA_Me_trans tRNA methyl transferase Back     alignment and domain information
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional Back     alignment and domain information
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>PRK14561 hypothetical protein; Provisional Back     alignment and domain information
>PRK00919 GMP synthase subunit B; Validated Back     alignment and domain information
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI Back     alignment and domain information
>PF10288 DUF2392: Protein of unknown function (DUF2392); InterPro: IPR019407 Cytoplasmic thiouridylase is a highly conserved complex responsible for the 2-thiolation of cytosolic tRNAs [] Back     alignment and domain information
>TIGR03573 WbuX N-acetyl sugar amidotransferase Back     alignment and domain information
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Back     alignment and domain information
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD) Back     alignment and domain information
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit Back     alignment and domain information
>PLN02347 GMP synthetase Back     alignment and domain information
>PRK01565 thiamine biosynthesis protein ThiI; Provisional Back     alignment and domain information
>PRK05370 argininosuccinate synthase; Validated Back     alignment and domain information
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase Back     alignment and domain information
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6 Back     alignment and domain information
>PRK13980 NAD synthetase; Provisional Back     alignment and domain information
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism] Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>PRK11106 queuosine biosynthesis protein QueC; Provisional Back     alignment and domain information
>KOG2805|consensus Back     alignment and domain information
>TIGR00552 nadE NAD+ synthetase Back     alignment and domain information
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only] Back     alignment and domain information
>PRK00509 argininosuccinate synthase; Provisional Back     alignment and domain information
>cd01995 ExsB ExsB is a transcription regulator related protein Back     alignment and domain information
>TIGR00032 argG argininosuccinate synthase Back     alignment and domain information
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional Back     alignment and domain information
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>TIGR00364 exsB protein Back     alignment and domain information
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 6e-09
3a2k_A464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 3e-07
1wy5_A317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 7e-09
1wy5_A317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 3e-07
1ni5_A433 Putative cell cycle protein MESJ; structural genom 3e-07
1ni5_A433 Putative cell cycle protein MESJ; structural genom 1e-05
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Length = 464 Back     alignment and structure
 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 90  FRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRG 127
            R +             VA GH+ DD  ET+LM ++RG
Sbjct: 106 CRYRFFAELMEKHQAGYVAVGHHGDDQVETILMRLVRG 143
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Length = 464 Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Length = 317 Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Length = 317 Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Length = 433 Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
3a2k_A464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 100.0
1wy5_A317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 100.0
1ni5_A433 Putative cell cycle protein MESJ; structural genom 100.0
3k32_A203 Uncharacterized protein MJ0690; predicted subunit 99.36
2der_A380 TRNA-specific 2-thiouridylase MNMA; protein-RNA co 99.07
3a2k_A464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 99.04
2hma_A376 Probable tRNA (5-methylaminomethyl-2-thiouridylat 98.98
1wy5_A317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 98.97
2c5s_A413 THII, probable thiamine biosynthesis protein THII; 98.94
1ni5_A433 Putative cell cycle protein MESJ; structural genom 98.83
3tqi_A527 GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 98.81
3bl5_A219 Queuosine biosynthesis protein QUEC; PREQ1 biosynt 98.81
2dpl_A308 GMP synthetase, GMP synthase [glutamine-hydrolyzin 98.77
2pg3_A232 Queuosine biosynthesis protein QUEC; YP_049261.1, 98.4
2ywb_A503 GMP synthase [glutamine-hydrolyzing]; GMP syntheta 98.34
1sur_A215 PAPS reductase; assimilatory sulfate reduction, 3- 98.31
1kor_A400 Argininosuccinate synthetase; ligase, riken struct 98.24
1zun_A325 Sulfate adenylyltransferase subunit 2; beta barrel 98.17
1k92_A455 Argininosuccinate synthase, argininosuccinate SY; 98.14
2vxo_A697 GMP synthase [glutamine-hydrolyzing]; proto-oncoge 98.08
2nz2_A413 Argininosuccinate synthase; amino-acid biosynthesi 98.06
1gpm_A525 GMP synthetase, XMP aminase; class I glutamine ami 98.05
2o8v_A252 Phosphoadenosine phosphosulfate reductase; disulfi 97.91
3p52_A249 NH(3)-dependent NAD(+) synthetase; structural geno 97.66
2oq2_A261 Phosphoadenosine phosphosulfate reductase; sulfate 97.63
3uow_A556 GMP synthetase; structural genomics consortium, SG 97.53
3k32_A203 Uncharacterized protein MJ0690; predicted subunit 97.48
1xng_A268 NH(3)-dependent NAD(+) synthetase; amidotransferas 97.33
2e18_A257 NH(3)-dependent NAD(+) synthetase; ligase, structu 97.22
3fiu_A249 NH(3)-dependent NAD(+) synthetase; rossman fold, a 97.14
1vbk_A307 Hypothetical protein PH1313; structural genomics, 96.97
2goy_A275 Adenosine phosphosulfate reductase; iron sulfur cl 96.96
2c5s_A413 THII, probable thiamine biosynthesis protein THII; 96.57
1vl2_A421 Argininosuccinate synthase; TM1780, structural gen 96.52
2dpl_A308 GMP synthetase, GMP synthase [glutamine-hydrolyzin 96.09
2der_A380 TRNA-specific 2-thiouridylase MNMA; protein-RNA co 95.65
3tqi_A527 GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 95.54
3bl5_A219 Queuosine biosynthesis protein QUEC; PREQ1 biosynt 94.98
2hma_A376 Probable tRNA (5-methylaminomethyl-2-thiouridylat 94.67
2ywb_A503 GMP synthase [glutamine-hydrolyzing]; GMP syntheta 92.67
1gpm_A525 GMP synthetase, XMP aminase; class I glutamine ami 89.49
1kor_A400 Argininosuccinate synthetase; ligase, riken struct 89.35
2pg3_A232 Queuosine biosynthesis protein QUEC; YP_049261.1, 87.57
2nz2_A413 Argininosuccinate synthase; amino-acid biosynthesi 87.48
2wsi_A306 FAD synthetase; transferase, nucleotidyltransferas 84.89
1k92_A455 Argininosuccinate synthase, argininosuccinate SY; 84.39
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
Probab=100.00  E-value=4.8e-35  Score=293.31  Aligned_cols=272  Identities=15%  Similarity=0.065  Sum_probs=217.3

Q ss_pred             hHhhHHHHHHHHHHHHHHHhcCCC--EEEeccCCC-CCCcHHHHHHHHHHh-hchhcccccchhhh---cCCCccchhhh
Q psy16535         16 NNCTFCGVFRRQALDRGAAMLGVD--CVATGHNAD-DTDDIAETVLMNVLR-GDIARLQRCTDIIT---IGRKNNCTFCG   88 (333)
Q Consensus        16 ~~~~~~~~~r~~~L~~~~~~~g~~--~Ia~~H~ld-~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~---~~~~~~~~~cr   88 (333)
                      +..|.+...   +|.++....|++  +++++|+++ .+|+.++.++..+|+ .++|+.+...++..   ..+.++|.+||
T Consensus        28 G~DS~~Ll~---ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR  104 (464)
T 3a2k_A           28 GPDSLALLH---VFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAAR  104 (464)
T ss_dssp             SHHHHHHHH---HHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHTTTTCCSHHHHH
T ss_pred             cHHHHHHHH---HHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEEEEechhhhhhccCCCHHHHHH
Confidence            455555443   555555556655  556789988 567889999999999 88998776655443   22346899999


Q ss_pred             hHHHHHHHHHhHhccccEEEcccCCcchHHHHHHHHHhcCcc-ccccC--------Ccccc---ccCHHHHHHHHHHcCC
Q psy16535         89 VFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIA-RLQRC--------TDIIT---YAYEKEIVMYAYYKKL  156 (333)
Q Consensus        89 ~~Rr~~l~~~a~~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~L~~~--------~~iiR---~i~k~EI~~y~~~~~l  156 (333)
                      .+||.+|.++|+++|+++|+||||+||++||+|||++||+|. ||.+|        +.++|   .++|+||.+||+.+|+
T Consensus       105 ~~Ry~~l~~~a~~~g~~~IatgH~~dD~aEt~L~~l~rG~g~~gL~gm~~~~~~~~~~iiRPLl~~~k~eI~~ya~~~gl  184 (464)
T 3a2k_A          105 ICRYRFFAELMEKHQAGYVAVGHHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGYLIRPFLAVSRAEIEAYCRQMGL  184 (464)
T ss_dssp             HHHHHHHHHHHHTTTCCEEECCCCHHHHHHHHHHHHHHCCCSSSTTCSCSEEECSSSEEECGGGGSCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHcCcCEEEEeCChHHHHHHHHHHHHcCCCcccccCCCccccCCCCEEECCCccCcHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999985 67765        34677   8999999999999999


Q ss_pred             CceecCCCCCCchhHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHhccCCCc-hhhhhhhc-CcchhhhhhHHhhHHH
Q psy16535        157 VYFSTECIFAPNAYRGHART-FLKHLEKIRPASIMDIIHSGEQMAIKEGVKLPN-REVCELCG-FLSSQKICKACSLLEG  233 (333)
Q Consensus       157 ~~~~D~~n~~~~~~Rn~iR~-~lp~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~ic~~c~l~~~  233 (333)
                      ||++|+||++..|.||+||+ ++|.|++.||++..+++++++.+++++++++.. ......+. ... +.    ..++..
T Consensus       185 ~~~~d~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~r~a~~~~~~~~~l~~~~~~~~~~~~~~~~-~~----~~l~~~  259 (464)
T 3a2k_A          185 SPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFLEELAADALNKVMEKQH-RD----AALSIG  259 (464)
T ss_dssp             SSCSCTTCCCTTSHHHHHHHTHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECSS-SS----CEECHH
T ss_pred             CeEECCCCCCccchHHHHHHHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-Cc----EEEEHH
Confidence            99999999999999999998 999999999999999999999999988775532 22222221 111 11    134455


Q ss_pred             HhccCCcccccHHHHHHHHHHhhcCC-CCCCChHHHHHHHHHhhCCC-CCeeecCC-----cccceeeeec
Q psy16535        234 LNKGLPKLSLSKRSVQDRIRQENYSK-VQSITGYRDDSLETVKQNKE-DYQMDLKI-----LSYDELYGWT  297 (333)
Q Consensus       234 ~~~~l~~~~~~~~r~i~~~l~~~~~~-~~~~s~~hi~~i~~ll~~~~-g~~i~Lp~-----~~y~~l~~~~  297 (333)
                      .+..+|+++  |+++|+.||....+. ...++..|+++|.+++.++. +++++||.     +.|+.++++.
T Consensus       260 ~l~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  328 (464)
T 3a2k_A          260 PFLELPRPL--QRRVLQLLLLRLYGGVPPTLTSVHIGHILMLCERGRPSGMIDLPKGLKVIRSYDRCLFTF  328 (464)
T ss_dssp             HHHHSCHHH--HHHHHHHHHHHTTSCCTTCCHHHHHHHHHHHHHCSCSEEEEECSTTCEEEEETTEEEEES
T ss_pred             HHhcCCHHH--HHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCCCEEEEEECCEEEEEe
Confidence            567889999  999999999887543 46799999999999997653 57899994     6899988853
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Back     alignment and structure
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Back     alignment and structure
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Back     alignment and structure
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Back     alignment and structure
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} Back     alignment and structure
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A Back     alignment and structure
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1 Back     alignment and structure
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Back     alignment and structure
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2 Back     alignment and structure
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A* Back     alignment and structure
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 Back     alignment and structure
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* Back     alignment and structure
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Back     alignment and structure
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens} Back     alignment and structure
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Back     alignment and structure
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Back     alignment and structure
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0 Back     alignment and structure
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Back     alignment and structure
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Back     alignment and structure
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A Back     alignment and structure
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii} Back     alignment and structure
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} Back     alignment and structure
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa} Back     alignment and structure
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1 Back     alignment and structure
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A Back     alignment and structure
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Back     alignment and structure
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Back     alignment and structure
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} Back     alignment and structure
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Back     alignment and structure
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Back     alignment and structure
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Back     alignment and structure
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A* Back     alignment and structure
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1 Back     alignment and structure
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens} Back     alignment and structure
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 333
d2c5sa1218 c.26.2.6 (A:174-391) Thiamine biosynthesis protein 1e-05
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Length = 218 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ThiI-like
domain: Thiamine biosynthesis protein ThiI, C-terminal domain
species: Bacillus anthracis [TaxId: 1392]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 9/132 (6%)

Query: 81  KNNCTFCGVFRRQALDRGAAMLGVDCVATGHNADDIAETVLMNVLRGDIARLQRCTDIIT 140
             + T       +  +R A       + TG +   +A   L ++   +          + 
Sbjct: 85  SYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEVTNYPVIRPLI 144

Query: 141 YAYEKEIVMYAYYKKLVYFST----ECIFAPNAYRGHARTFLKHLEKI-----RPASIMD 191
              + EI+  A        S     +C           +   +   +          I +
Sbjct: 145 TMDKLEIIKIAEEIGTYDISIRPYEDCCTVFTPASPATKPKREKANRFEAKYDFTPLIDE 204

Query: 192 IIHSGEQMAIKE 203
            + + E M ++ 
Sbjct: 205 AVANKETMVLQT 216

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 99.96
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 99.95
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 99.32
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 99.18
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 98.68
d1wy5a295 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 98.32
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 97.34
d1k92a1188 Argininosuccinate synthetase, N-terminal domain {E 97.27
d1vl2a1168 Argininosuccinate synthetase, N-terminal domain {T 96.93
d1j20a1165 Argininosuccinate synthetase, N-terminal domain {T 95.08
d1vbka1132 Hypothetical protein PH1313, C-terminal domain {Ar 91.83
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: TilS-like protein Aq 1887
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.96  E-value=7.9e-30  Score=229.08  Aligned_cols=158  Identities=21%  Similarity=0.240  Sum_probs=133.7

Q ss_pred             HHHHHHHhcCCC---EEEeccCCCCCCcHHHHHHHHHHh-hchhcccccchhhh---cCCCccchhhhhHHHHHHHHHhH
Q psy16535         28 ALDRGAAMLGVD---CVATGHNADDTDDIAETVLMNVLR-GDIARLQRCTDIIT---IGRKNNCTFCGVFRRQALDRGAA  100 (333)
Q Consensus        28 ~L~~~~~~~g~~---~Ia~~H~ld~~~D~~Etfv~nl~r-g~i~~l~~~~~v~~---~~~~~~~~~cr~~Rr~~l~~~a~  100 (333)
                      +|.++...++..   +++++|+.+++++.++.++.++|. .+++++....+...   ....++|..||.+||.+|.++|+
T Consensus        43 lL~~~~~~~~~~~i~~~~vdh~~r~~s~~~~~~~~~~~~~l~i~~~i~~~~~~~~~~~~~~~~~~~~R~~Ry~~l~~~a~  122 (216)
T d1wy5a1          43 VLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILE  122 (216)
T ss_dssp             HHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcEEEEEeecccccchhhhhhHHHHHHHhhhhhhhhhccchhhhccCCccchHHHHHHHHHHHhhhhcc
Confidence            455555555554   445689988878899999999999 88998765544332   23346788899999999999999


Q ss_pred             hccccEEEcccCCcchHHHHHHHHHhcCcc-ccccCC----cccc---ccCHHHHHHHHHHcCCCceecCCCCCCchhHH
Q psy16535        101 MLGVDCVATGHNADDIAETVLMNVLRGDIA-RLQRCT----DIIT---YAYEKEIVMYAYYKKLVYFSTECIFAPNAYRG  172 (333)
Q Consensus       101 ~~g~~~ia~aH~~dD~~ET~l~nl~rg~~~-~L~~~~----~iiR---~i~k~EI~~y~~~~~l~~~~D~~n~~~~~~Rn  172 (333)
                      +.|+++|+||||+||++||+|||++||++. +|.++.    .++|   .++|+||..||+.+||||++|+||++..|.||
T Consensus       123 ~~~~~~ia~GH~~dD~~Et~l~~l~rg~~~~~l~~~~~~~~~i~RPLl~~~k~eI~~~a~~~~l~~~~D~sN~~~~~~Rn  202 (216)
T d1wy5a1         123 SEGFDCIATAHHLNDLLETSLLFFTRGTGLDGLIGFLPKEEVIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYEVSIPRN  202 (216)
T ss_dssp             HTTCSEEECCCCHHHHHHHHHHHHHHCCCHHHHHCSCSEETTEECTTTTCCHHHHHHHHHHTTCCCCCCGGGGTCCHHHH
T ss_pred             ccccceeEeeeeccchHHHHHHHhhcCCccccccCCCcccceecchhhcCCHHHHHHHHHHcCCcEEECcCCCCCcccHH
Confidence            999999999999999999999999999985 676653    4567   89999999999999999999999999999999


Q ss_pred             HHHH-HHHHHHHHC
Q psy16535        173 HART-FLKHLEKIR  185 (333)
Q Consensus       173 ~iR~-~lp~l~~~~  185 (333)
                      +||+ +||.|+++|
T Consensus       203 ~iR~~l~p~l~~~n  216 (216)
T d1wy5a1         203 RIRHRVIPELKRIN  216 (216)
T ss_dssp             HHHHTHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcC
Confidence            9998 999999876
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wy5a2 d.229.1.1 (A:217-311) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure