Psyllid ID: psy16549

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60
Protein Sequence
MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSILQHLLKY
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHcHHHHHHccEcccccccccHccEEEEEEHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MFTTLGFTCVAFVTGalawfgphylELGVNlqeghenvsmdetyLTIDYRLSILQHLLKY
Flexible Loop (DISEMBL)
MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSILQHLLKY
Low Complexity Region (SEG)
MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSILQHLLKY
Disordered region (IsUnstruct)
**TTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSILQHLL**
Disordered Region (DISOPRED)
*FTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSILQHLLKY
Disordered Region (DISEMBL)
MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSILQHLLKY
Disordered Region (DISPRO)
*FTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSILQHLLKY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSILQHLLKY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	60	2.2.26 [Sep-21-2011]
Q9GQQ0	605	Protein spinster OS=Droso	no	N/A	0.7	0.069	0.571	3e-09

>sp|Q9GQQ0|SPIN_DROME Protein spinster OS=Drosophila melanogaster GN=spin PE=1 SV=1

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 33/42 (78%)

Query: 1   MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDE 42
           M +T GFTCVAFV GALAW+GP ++ LG+ +Q G+EN+  D+
Sbjct: 323 MLSTAGFTCVAFVAGALAWWGPSFIYLGMKMQPGNENIVQDD 364

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage. Involved in TGF-beta-mediated synaptic growth regulation both pre- and postsynaptically via its function in endosomal storage regulation. Also required during oogenesis by regulating yolk spheres storage.
Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
195383926	668	GJ22291 [Drosophila virilis] gi|19414547	0.7	0.062	0.595	2e-08
242006195	445	conserved hypothetical protein [Pediculu	0.766	0.103	0.565	3e-08
195121578	590	GI19157 [Drosophila mojavensis] gi|19391	0.833	0.084	0.481	4e-08
24654044	402	spinster, isoform E [Drosophila melanoga	0.733	0.109	0.545	5e-08
12003978	402	spinster type V [Drosophila melanogaster	0.733	0.109	0.545	5e-08
195029693	576	GH22071 [Drosophila grimshawi] gi|193903	0.7	0.072	0.571	5e-08
24654041	630	spinster, isoform B [Drosophila melanoga	0.883	0.084	0.473	5e-08
24654037	605	spinster, isoform C [Drosophila melanoga	0.883	0.087	0.473	6e-08
195334805	605	GM21663 [Drosophila sechellia] gi|194126	0.883	0.087	0.473	6e-08
195171192	609	GL20621 [Drosophila persimilis] gi|19411	0.833	0.082	0.481	8e-08

>gi|195383926|ref|XP_002050676.1| GJ22291 [Drosophila virilis] gi|194145473|gb|EDW61869.1| GJ22291 [Drosophila virilis]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 34/42 (80%)

Query: 1   MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDE 42
           M +T GFTCVAFV GALAW+GP Y+ LG+ +Q G+EN+ +D+
Sbjct: 297 MLSTAGFTCVAFVAGALAWWGPTYIHLGLKMQPGNENLQLDD 338

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006195|ref|XP_002423939.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212507209|gb|EEB11201.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 1   MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLT 46
           MF+T+GF CV+FVTGALAW+GP ++  GV LQ G+ENV +++   T
Sbjct: 149 MFSTIGFMCVSFVTGALAWWGPDFIYRGVKLQPGNENVQLNDIAFT 194

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195121578|ref|XP_002005297.1| GI19157 [Drosophila mojavensis] gi|193910365|gb|EDW09232.1| GI19157 [Drosophila mojavensis]

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 4/54 (7%)

Query: 1   MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSIL 54
           + +T GFTCVAFVTGALAW+GP+Y+ LG+ +Q G+EN+  ++    I Y+  ++
Sbjct: 296 VLSTAGFTCVAFVTGALAWWGPNYIHLGLKMQPGNENLKQED----ISYKFGLV 345

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24654044|ref|NP_725533.1| spinster, isoform E [Drosophila melanogaster] gi|21645348|gb|AAM70953.1| spinster, isoform E [Drosophila melanogaster]

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 34/44 (77%)

Query: 1   MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETY 44
           M +T GFTCVAFV GALAW+GP ++ LG+ +Q G+EN+  D+ +
Sbjct: 323 MLSTAGFTCVAFVAGALAWWGPSFIYLGMKMQPGNENIVQDDMW 366

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|12003978|gb|AAG43829.1|AF212370_1 spinster type V [Drosophila melanogaster]

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 34/44 (77%)

Query: 1   MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETY 44
           M +T GFTCVAFV GALAW+GP ++ LG+ +Q G+EN+  D+ +
Sbjct: 323 MLSTAGFTCVAFVAGALAWWGPSFIYLGMKMQPGNENIVQDDMW 366

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195029693|ref|XP_001987706.1| GH22071 [Drosophila grimshawi] gi|193903706|gb|EDW02573.1| GH22071 [Drosophila grimshawi]

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 35/42 (83%)

Query: 1   MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDE 42
           MF+T GFTCVAFVTGALAW+GP ++  G+ +Q G+E++ +D+
Sbjct: 295 MFSTAGFTCVAFVTGALAWWGPTFIHSGLKMQPGNEDLQLDD 336

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24654041|ref|NP_725532.1| spinster, isoform B [Drosophila melanogaster] gi|12003970|gb|AAG43825.1|AF212366_1 spinster type I [Drosophila melanogaster] gi|21645346|gb|AAM70951.1| spinster, isoform B [Drosophila melanogaster]

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 1   MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSILQHL 57
           M +T GFTCVAFV GALAW+GP ++ LG+ +Q G+EN+  D+    I Y+  ++  L
Sbjct: 323 MLSTAGFTCVAFVAGALAWWGPSFIYLGMKMQPGNENIVQDD----ISYKFGLVAML 375

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24654037|ref|NP_725530.1| spinster, isoform C [Drosophila melanogaster] gi|12003974|gb|AAG43827.1|AF212368_1 spinster type III [Drosophila melanogaster] gi|21645344|gb|AAM70950.1| spinster, isoform C [Drosophila melanogaster] gi|189182160|gb|ACD81856.1| LD31602p [Drosophila melanogaster]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 1   MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSILQHL 57
           M +T GFTCVAFV GALAW+GP ++ LG+ +Q G+EN+  D+    I Y+  ++  L
Sbjct: 323 MLSTAGFTCVAFVAGALAWWGPSFIYLGMKMQPGNENIVQDD----ISYKFGLVAML 375

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195334805|ref|XP_002034067.1| GM21663 [Drosophila sechellia] gi|194126037|gb|EDW48080.1| GM21663 [Drosophila sechellia]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 1   MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSILQHL 57
           M +T GFTCVAFV GALAW+GP ++ LG+ +Q G+EN+  D+    I Y+  ++  L
Sbjct: 323 MLSTAGFTCVAFVAGALAWWGPSFIYLGMKMQPGNENIVQDD----ISYKFGLVAML 375

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195171192|ref|XP_002026391.1| GL20621 [Drosophila persimilis] gi|194111293|gb|EDW33336.1| GL20621 [Drosophila persimilis]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 1   MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSIL 54
           M +T GFTCVAFV GAL+W+GP ++ LG+ +Q G+EN+  D+    I Y+  I+
Sbjct: 304 MLSTAGFTCVAFVAGALSWWGPSFIYLGMKMQPGNENIVQDD----ISYKFGIV 353

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
FB|FBgn0086676	605	spin "spinster" [Drosophila me	0.7	0.069	0.571	6.4e-09

FB|FBgn0086676 spin "spinster" [Drosophila melanogaster (taxid:7227)]

 Score = 143 (55.4 bits), Expect = 6.4e-09, P = 6.4e-09
 Identities = 24/42 (57%), Positives = 33/42 (78%)

Query:     1 MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDE 42
             M +T GFTCVAFV GALAW+GP ++ LG+ +Q G+EN+  D+
Sbjct:   323 MLSTAGFTCVAFVAGALAWWGPSFIYLGMKMQPGNENIVQDD 364


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.142   0.445    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       60        60   0.00091  102 3  11 22  0.47    27
                                                     29  0.37    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  513 (55 KB)
  Total size of DFA:  93 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.70u 0.12s 7.82t   Elapsed:  00:00:01
  Total cpu time:  7.70u 0.12s 7.82t   Elapsed:  00:00:01
  Start:  Thu Aug 15 15:44:30 2013   End:  Thu Aug 15 15:44:31 2013

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0045924 "regulation of female receptivity" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0045477 "regulation of nurse cell apoptotic process" evidence=IMP

GO:0012501 "programmed cell death" evidence=NAS

GO:0007619 "courtship behavior" evidence=NAS

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0048488 "synaptic vesicle endocytosis" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0007040 "lysosome organization" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0031982 "vesicle" evidence=IDA

GO:0090099 "negative regulation of decapentaplegic signaling pathway" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	60
KOG1330|consensus	493		98.95

>KOG1330|consensus

Probab=98.95  E-value=5.8e-10  Score=84.95  Aligned_cols=52  Identities=21%  Similarity=0.414  Sum_probs=45.8

Q ss_pred             CchhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCCCCCCcceeehHHHHhhhhh
Q psy16549          1 MFTTLGFTCVAFVTGALAWFGPHYLELGVNLQEGHENVSMDETYLTIDYRLSILQHL   57 (60)
Q Consensus         1 v~sTlG~TavaFvtGALa~W~P~fi~~a~~~~~~~~~c~~~d~sliFG~IT~i~~~~   57 (60)
                      +.+|+|+++..||+|+++||+|+++++..++++    + +.+.+++||.|||+.|-+
T Consensus       247 v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~----~-~~~~~~ifg~vt~~~G~l  298 (493)
T KOG1330|consen  247 VLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIG----F-DHNATLIFGGVTCAGGSL  298 (493)
T ss_pred             eeehHHHHHHHHhccccchhhhhHHHHHHHHhC----C-ccccchhhhhHHHhhchh
Confidence            368999999999999999999999999999987    2 234699999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00